Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.
Genome size (bp): 4086189
Number of genes 3433
Oriloc predictions: Origin 69 kb Terminus 2227 kb
Worning et al., 2006: Origin 3464 kb Terminus 2230 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1642.294 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 505.27 kb
Consensus predictions: Origin 0 kb Terminus 2227 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1015 | NA | 2178 |
| GC-skew reverse | 2538 | NA | 2171 |
| AT-skew forward | 1045 | NA | 2228 |
| AT-skew reverse | 2548 | NA | 2226 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1015 (2178.225 kb) | leading | -0.069 |
| 1016 (2178.686 kb) | 1757 (4084.462 kb) | lagging | -0.127 | |
| GC-skew reverse | 1758 (0 kb) | 2538 (2171.0675 kb) | leading | 0.128 |
| 2539 (2180.808 kb) | 3433 (4084.462 kb) | lagging | 0.073 | |
| AT-skew forward | 1 (0 kb) | 1045 (2227.971 kb) | leading | -0.183 |
| 1046 (2229.0815 kb) | 1757 (4084.462 kb) | lagging | -0.078 | |
| AT-skew reverse | 1758 (0 kb) | 2548 (2226.1425 kb) | leading | 0.039 |
| 2549 (2234.295 kb) | 3433 (4084.462 kb) | lagging | 0.164 |
More G than C on the leading strand for replication.