Rearranged Oriloc output example: Previous Index Next
Bacteria; Firmicutes; Bacillales; Listeriaceae; Listeria.
Genome size (bp): 2905187
Number of genes 2820
Oriloc predictions: Origin 0 kb Terminus 1464 kb
Worning et al., 2006: Origin 0 kb Terminus 1434 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1.725 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1 kb
Consensus predictions: Origin 0 kb Terminus 1464 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 977 | NA | 1243 |
| GC-skew reverse | 1773 | NA | 1506 |
| AT-skew reverse | 1632 | NA | 1073 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 977 (1243.129 kb) | leading | 0.08 |
| 978 (1243.986 kb) | 1403 (2905 kb) | NA | -0.093 | |
| GC-skew reverse | 1404 (0 kb) | 1773 (1506.3955 kb) | leading | 0.114 |
| 1774 (1507.0375 kb) | 2820 (2905 kb) | lagging | -0.066 | |
| AT-skew reverse | 1404 (0 kb) | 1632 (1073.4455 kb) | leading | 0.075 |
| 1633 (1076.7195 kb) | 2820 (2905 kb) | lagging | -0.006 |
More G than C on the leading strand for replication - for reverse encoded genes.