Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.
Genome size (bp): 3304561
Number of genes 2959
Oriloc predictions: Origin 0 kb Terminus 1522 kb
Worning et al., 2006: Origin 3302 kb Terminus 1536 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2781.477 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1732.66 kb, 2698.35 kb, 3220.44 kb
Consensus predictions: Origin 0 kb Terminus 1522 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 768 | 0 | 1505 |
| GC-skew reverse | 2078 | 0 | 1520 |
| AT-skew forward | 793 | 0 | 1595 |
| 1250 | 0.04889 | 2797 | |
| 1345 | 0.00222 | 2950 | |
| AT-skew reverse | 2063 | 0 | 1499 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 768 (1504.826 kb) | leading | -0.027 |
| 769 (1519.286 kb) | 1503 (3304.518 kb) | lagging | -0.17 | |
| GC-skew reverse | 1504 (0 kb) | 2078 (1519.991 kb) | leading | 0.157 |
| 2079 (1521.0245 kb) | 2959 (3304.518 kb) | lagging | 0.023 | |
| AT-skew forward | 1 (0 kb) | 793 (1595.2895 kb) | leading | -0.205 |
| 794 (1596.0675 kb) | 1250 (2796.5785 kb) | lagging | 0.007 | |
| 1251 (2799.4965 kb) | 1345 (2950.4055 kb) | lagging | -0.093 | |
| 1346 (2953.6715 kb) | 1503 (3304.518 kb) | lagging | 0.088 | |
| AT-skew reverse | 1504 (0 kb) | 2063 (1499.313 kb) | leading | -0.029 |
| 2064 (1499.8875 kb) | 2959 (3304.518 kb) | lagging | 0.197 |
More G than C on the leading strand for replication.