Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
Genome size (bp): 3654135
Number of genes 3332
Oriloc predictions: Origin 0 kb Terminus 1901 kb
Worning et al., 2006: Origin 0 kb Terminus 1738 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 0.346 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 400.09 kb
Consensus predictions: Origin 0 kb Terminus 1901 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 918 | 0 | 1742 |
| GC-skew reverse | 2393 | 0 | 1734 |
| AT-skew forward | 894 | 0 | 1664 |
| AT-skew reverse | 2430 | 0 | 1812 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 918 (1742.091 kb) | leading | -0.109 |
| 919 (1745.187 kb) | 1718 (3654.135 kb) | lagging | -0.162 | |
| GC-skew reverse | 1719 (0 kb) | 2393 (1734.2625 kb) | leading | 0.146 |
| 2394 (1735.9575 kb) | 3332 (3654.135 kb) | lagging | 0.089 | |
| AT-skew forward | 1 (0 kb) | 894 (1664.24 kb) | leading | -0.251 |
| 895 (1666.679 kb) | 1718 (3654.135 kb) | lagging | -0.175 | |
| AT-skew reverse | 1719 (0 kb) | 2430 (1812.3565 kb) | leading | 0.179 |
| 2431 (1813.4605 kb) | 3332 (3654.135 kb) | lagging | 0.251 |
More G than C on the leading strand for replication.