Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.
Genome size (bp): 2074782
Number of genes 1833
Oriloc predictions: Origin 1047 kb Terminus 0 kb
Worning et al., 2006: Origin NA kb Terminus NA kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 569.322 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): NA
Consensus predictions: Origin 1047 kb Terminus 0 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 441 | 0.00667 | 1046 |
| GC-skew reverse | 1400 | 0 | 973 |
| AT-skew forward | 441 | 0 | 1046 |
| AT-skew reverse | 969 | 0.00667 | 78 |
| 1430 | 0.01667 | 1057 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 441 (1045.5915 kb) | lagging | -0.14 |
| 442 (1049.4 kb) | 921 (2073.818 kb) | leading | -0.062 | |
| GC-skew reverse | 922 (0 kb) | 1400 (972.503 kb) | lagging | 0.076 |
| 1401 (975.064 kb) | 1833 (2073.818 kb) | leading | 0.141 | |
| AT-skew forward | 1 (0 kb) | 441 (1045.5915 kb) | lagging | -0.205 |
| 442 (1049.4 kb) | 921 (2073.818 kb) | leading | -0.336 | |
| AT-skew reverse | 922 (0 kb) | 969 (78.2705 kb) | lagging | 0.155 |
| 970 (81.562 kb) | 1430 (1057.083 kb) | lagging | 0.336 | |
| 1431 (1060.181 kb) | 1833 (2073.818 kb) | leading | 0.22 |
More G than C on the leading strand for replication.