Rearranged Oriloc output example: Previous Index Next
Bacteria; Bacteroidetes; Bacteroidetes (class); Bacteroidales; Bacteroidaceae; Bacteroides.
Genome size (bp): 5205140
Number of genes 4176
Oriloc predictions: Origin 0 kb Terminus 2730 kb
Worning et al., 2006: Origin 5205 kb Terminus 2716 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1371.344 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 4269.64 kb
Consensus predictions: Origin 0 kb Terminus 2730 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 741 | 0 | 1699 |
| 811 | 0 | 1790 | |
| 1269 | 0 | 2734 | |
| GC-skew reverse | 2527 | 0.03667 | 1314 |
| 3010 | 0 | 2733 | |
| AT-skew forward | 533 | 0.03667 | 1302 |
| 1277 | 0 | 2748 | |
| AT-skew reverse | 3010 | 0 | 2733 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 741 (1698.6775 kb) | leading | 0.202 |
| 742 (1699.965 kb) | 811 (1789.9265 kb) | leading | 0.028 | |
| 812 (1791.197 kb) | 1269 (2733.988 kb) | leading | 0.171 | |
| 1270 (2738.1565 kb) | 2068 (5204.75 kb) | lagging | -0.128 | |
| GC-skew reverse | 2069 (0 kb) | 2527 (1314.3715 kb) | leading | 0.159 |
| 2528 (1318.607 kb) | 3010 (2732.8295 kb) | leading | 0.086 | |
| 3011 (2734.082 kb) | 4176 (5204.75 kb) | lagging | -0.182 | |
| AT-skew forward | 1 (0 kb) | 533 (1301.9185 kb) | leading | -0.211 |
| 534 (1304.147 kb) | 1277 (2748.4195 kb) | leading | -0.145 | |
| 1278 (2749.816 kb) | 2068 (5204.75 kb) | lagging | 0.068 | |
| AT-skew reverse | 2069 (0 kb) | 3010 (2732.8295 kb) | leading | -0.041 |
| 3011 (2734.082 kb) | 4176 (5204.75 kb) | lagging | 0.204 |
More G than C on the leading strand for replication.