Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.
Genome size (bp): 2075560
Number of genes 1876
Oriloc predictions: Origin 1025 kb Terminus 0 kb
Worning et al., 2006: Origin NA kb Terminus NA kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1505.434 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): NA
Consensus predictions: Origin 1025 kb Terminus 0 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 382 | NA | 917 |
| GC-skew reverse | 1429 | NA | 1024 |
| AT-skew forward | 421 | NA | 1021 |
| AT-skew reverse | 1437 | NA | 1041 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 382 (916.798 kb) | lagging | -0.149 |
| 383 (917.7785 kb) | 938 (2075.102 kb) | leading | -0.076 | |
| GC-skew reverse | 939 (0 kb) | 1429 (1024.1195 kb) | lagging | 0.064 |
| 1430 (1025.4565 kb) | 1876 (2075.102 kb) | leading | 0.139 | |
| AT-skew forward | 1 (0 kb) | 421 (1021.4475 kb) | lagging | -0.216 |
| 422 (1022.5515 kb) | 938 (2075.102 kb) | leading | -0.335 | |
| AT-skew reverse | 939 (0 kb) | 1437 (1041.2255 kb) | lagging | 0.333 |
| 1438 (1047.2975 kb) | 1876 (2075.102 kb) | leading | 0.215 |
More G than C on the leading strand for replication.