Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.
Genome size (bp): 2107794
Number of genes 2122
Oriloc predictions: Origin 1993 kb Terminus 1008 kb
Worning et al., 2006: Origin 1989 kb Terminus 1010 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1994.176 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1.53 kb
Consensus predictions: Origin 1993 kb Terminus 1008 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 567 | NA | 1023 |
| 944 | NA | 1997 | |
| GC-skew reverse | 1465 | NA | 997 |
| AT-skew forward | 497 | NA | 910 |
| 937 | NA | 1979 | |
| AT-skew reverse | 1487 | NA | 1041 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 567 (1022.605 kb) | leading | -0.012 |
| 568 (1023.72 kb) | 944 (1996.603 kb) | lagging | -0.14 | |
| 945 (1997.2245 kb) | 1025 (2107.585 kb) | leading | -0.028 | |
| GC-skew reverse | 1026 (0 kb) | 1465 (996.532 kb) | leading | 0.115 |
| 1466 (998.5145 kb) | 2122 (2107.585 kb) | lagging | -0.007 | |
| AT-skew forward | 1 (0 kb) | 497 (910.0405 kb) | leading | -0.316 |
| 498 (911.7055 kb) | 937 (1979.2755 kb) | lagging | -0.182 | |
| 938 (1980.48 kb) | 1025 (2107.585 kb) | leading | -0.346 | |
| AT-skew reverse | 1026 (0 kb) | 1487 (1041.082 kb) | leading | 0.198 |
| 1488 (1042.74 kb) | 2122 (2107.585 kb) | lagging | 0.335 |
More G than C on the leading strand for replication.