Rearranged Oriloc output example: Previous Index Next
Bacteria; Spirochaetes; Spirochaetales; Leptospiraceae; Leptospira.
Genome size (bp): 4332241
Number of genes 4360
Oriloc predictions: Origin 0 kb Terminus 2139 kb
Worning et al., 2006: Origin 4332 kb Terminus 2143 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1719.777 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.9 kb
Consensus predictions: Origin 0 kb Terminus 2139 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew reverse | 3169 | NA | 2161 |
| AT-skew forward | 1287 | NA | 2179 |
| AT-skew reverse | 3156 | NA | 2123 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew reverse | 2266 (0 kb) | 3169 (2161.46 kb) | leading | 0.118 |
| 3170 (2168.856 kb) | 4360 (4332.008 kb) | lagging | -0.127 | |
| AT-skew forward | 1 (0 kb) | 1287 (2179.2125 kb) | leading | -0.091 |
| 1288 (2181.025 kb) | 2265 (4332.008 kb) | lagging | -0.001 | |
| AT-skew reverse | 2266 (0 kb) | 3156 (2123.4545 kb) | leading | 0.005 |
| 3157 (2125.1305 kb) | 4360 (4332.008 kb) | lagging | 0.081 |
More G than C on the leading strand for replication - for reverse encoded genes.