Rearranged Oriloc output example: Previous Index Next
Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus.
Genome size (bp): 2211485
Number of genes 2094
Oriloc predictions: Origin 0 kb Terminus 1010 kb
Worning et al., 2006: Origin NA kb Terminus NA kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1440.072 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.86 kb
Consensus predictions: Origin 0 kb Terminus 1010 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 783 | NA | 1005 |
| GC-skew reverse | 1163 | NA | 981 |
| 1681 | NA | 1640 | |
| 1776 | NA | 1749 | |
| AT-skew forward | 182 | NA | 225 |
| 593 | NA | 753 | |
| 924 | NA | 1931 | |
| AT-skew reverse | 1341 | NA | 1196 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 783 (1004.6445 kb) | leading | 0.151 |
| 784 (1006.6555 kb) | 1012 (2211.459 kb) | lagging | -0.222 | |
| GC-skew reverse | 1013 (0 kb) | 1163 (980.5315 kb) | leading | 0.182 |
| 1164 (985.1335 kb) | 1681 (1640.4645 kb) | lagging | -0.109 | |
| 1682 (1641.669 kb) | 1776 (1749.1035 kb) | lagging | -0.19 | |
| 1777 (1750.0065 kb) | 2094 (2211.459 kb) | lagging | -0.115 | |
| AT-skew forward | 1 (0 kb) | 182 (225.409 kb) | leading | -0.11 |
| 183 (226.747 kb) | 593 (752.9325 kb) | leading | -0.084 | |
| 594 (753.2065 kb) | 924 (1930.7765 kb) | NA | -0.116 | |
| 925 (1931.806 kb) | 1012 (2211.459 kb) | lagging | -0.05 | |
| AT-skew reverse | 1013 (0 kb) | 1341 (1196.2945 kb) | NA | 0.074 |
| 1342 (1196.9265 kb) | 2094 (2211.459 kb) | lagging | 0.108 |