Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.
Genome size (bp): 3281945
Number of genes 2926
Oriloc predictions: Origin 1013 kb Terminus 2596 kb
Worning et al., 2006: Origin 1006 kb Terminus 2640 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1012.476 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1004.52 kb
Consensus predictions: Origin 1013 kb Terminus 2596 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 357 | NA | 1015 |
| 1250 | NA | 2611 | |
| GC-skew reverse | 2090 | NA | 1001 |
| 2613 | NA | 2636 | |
| AT-skew forward | 341 | NA | 985 |
| 1078 | NA | 2341 | |
| AT-skew reverse | 2108 | NA | 1047 |
| 2595 | NA | 2591 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 357 (1014.698 kb) | lagging | -0.134 |
| 358 (1015.337 kb) | 1250 (2610.9615 kb) | leading | 0.067 | |
| 1251 (2615.102 kb) | 1521 (3281.905 kb) | lagging | -0.126 | |
| GC-skew reverse | 1522 (0 kb) | 2090 (1000.904 kb) | lagging | -0.059 |
| 2091 (1002.677 kb) | 2613 (2636.461 kb) | leading | 0.113 | |
| 2614 (2638.6655 kb) | 2926 (3281.905 kb) | lagging | -0.065 | |
| AT-skew forward | 1 (0 kb) | 341 (985.466 kb) | lagging | -0.058 |
| 342 (986.716 kb) | 1078 (2341.0775 kb) | leading | -0.141 | |
| 1079 (2345.081 kb) | 1521 (3281.905 kb) | NA | -0.104 | |
| AT-skew reverse | 1522 (0 kb) | 2108 (1047.394 kb) | lagging | 0.146 |
| 2109 (1048.79 kb) | 2595 (2590.733 kb) | leading | 0.073 | |
| 2596 (2595.09 kb) | 2926 (3281.905 kb) | lagging | 0.129 |
More G than C on the leading strand for replication.