Rearranged Oriloc output example: Previous Index Next




Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Cellulomonadaceae; Tropheryma.
Genome size (bp): 927303
Number of genes 808
Oriloc predictions: Origin 0 kb Terminus 407 kb
Worning et al., 2006: Origin 410 kb Terminus 8 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1.479 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.72 kb
Consensus predictions: Origin 0 kb Terminus 407 kb
Significant breakpoints (p-value <0.05):
Breakpoints P-value Chromosome coordinate (kb)
GC-skew forward144NA272
248NA418
GC-skew reverse470NA430
655NA668
700NA747
AT-skew forward246NA411
306NA717
AT-skew reverse463NA416
653NA666
Segments:
From (index/coord) To (index/coord) StrandSlope
GC-skew forward 1 (0 kb)144 (271.8725 kb) leading0.044
145 (276.629 kb)248 (417.5985 kb) leading0.16
249 (421.321 kb)378 (927.266 kb) lagging0.067
GC-skew reverse 379 (0 kb)470 (429.958 kb) leading-0.07
471 (431.1545 kb)655 (667.6945 kb) lagging-0.115
656 (668.569 kb)700 (747.008 kb) lagging0.027
701 (748.5055 kb)808 (927.266 kb) lagging-0.107
AT-skew forward 1 (0 kb)246 (410.836 kb) leading-0.272
247 (414.36 kb)306 (716.6515 kb) lagging0.008
307 (726.8145 kb)378 (927.266 kb) lagging-0.095
AT-skew reverse 379 (0 kb)463 (416.0635 kb) leading0.084
464 (416.4685 kb)653 (666.185 kb) lagging0.306
654 (667.174 kb)808 (927.266 kb) lagging0.21
More T than A on the leading strand for replication.