Rearranged Oriloc output example: Previous Index Next
Bacteria; Planctomycetes; Planctomycetacia; Planctomycetales; Planctomycetaceae; Rhodopirellula.
Genome size (bp): 7145576
Number of genes 7325
Oriloc predictions: Origin 5465 kb Terminus 1935 kb
Worning et al., 2006: Origin 5254 kb Terminus 1935 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 424.182 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 890.75 kb, 6247.2 kb
Consensus predictions: Origin 5465 kb Terminus 1935 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 996 | 0 | 1935 |
| 2805 | 0 | 5462 | |
| GC-skew reverse | 3838 | 0 | 421 |
| 4666 | 0 | 1937 | |
| 6428 | 0 | 5477 | |
| AT-skew forward | 1172 | 0 | 2222 |
| 2816 | 0 | 5502 | |
| AT-skew reverse | 3839 | 0 | 422 |
| 4635 | 0 | 1899 | |
| 6414 | 0 | 5452 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 996 (1934.844 kb) | leading | 0.021 |
| 997 (1937.932 kb) | 2805 (5461.92 kb) | lagging | -0.133 | |
| 2806 (5463.6515 kb) | 3627 (7145.536 kb) | leading | 0.027 | |
| GC-skew reverse | 3628 (0 kb) | 3838 (420.821 kb) | leading | -0.013 |
| 3839 (421.8245 kb) | 4666 (1936.8815 kb) | leading | 0.108 | |
| 4667 (1938.2045 kb) | 6428 (5477.159 kb) | lagging | -0.045 | |
| 6429 (5482.1825 kb) | 7325 (7145.536 kb) | leading | 0.102 | |
| AT-skew forward | 1 (0 kb) | 1172 (2222.04 kb) | leading | -0.101 |
| 1173 (2226.737 kb) | 2816 (5502.394 kb) | lagging | -0.002 | |
| 2817 (5502.5805 kb) | 3627 (7145.536 kb) | leading | -0.113 | |
| AT-skew reverse | 3628 (0 kb) | 3839 (421.8245 kb) | leading | 0.1 |
| 3840 (422.535 kb) | 4635 (1899.32 kb) | leading | 0.013 | |
| 4636 (1900.516 kb) | 6414 (5451.5615 kb) | lagging | 0.131 | |
| 6415 (5457.225 kb) | 7325 (7145.536 kb) | leading | 0.008 |
More G than C on the leading strand for replication.