Rearranged Oriloc output example: Previous Index Next
Bacteria; Cyanobacteria; Chroococcales; Synechococcus.
Genome size (bp): 2434428
Number of genes 2518
Oriloc predictions: Origin 0 kb Terminus 1237 kb
Worning et al., 2006: Origin 0 kb Terminus 1233 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 521.773 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1480.27 kb
Consensus predictions: Origin 0 kb Terminus 1237 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 724 | NA | 1374 |
| GC-skew reverse | 1969 | NA | 1310 |
| AT-skew forward | 656 | NA | 1272 |
| AT-skew reverse | 1751 | NA | 838 |
| 1933 | NA | 1235 | |
| 2282 | NA | 1863 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 724 (1373.8085 kb) | leading | 0.034 |
| 725 (1374.7215 kb) | 1343 (2434.164 kb) | lagging | -0.106 | |
| GC-skew reverse | 1344 (0 kb) | 1969 (1310.267 kb) | leading | 0.077 |
| 1970 (1312.0205 kb) | 2518 (2434.164 kb) | lagging | -0.049 | |
| AT-skew forward | 1 (0 kb) | 656 (1272.194 kb) | leading | -0.354 |
| 657 (1274.33 kb) | 1343 (2434.164 kb) | lagging | -0.127 | |
| AT-skew reverse | 1344 (0 kb) | 1751 (838.232 kb) | leading | 0.129 |
| 1752 (840.5995 kb) | 1933 (1235.182 kb) | leading | 0.104 | |
| 1934 (1237.868 kb) | 2282 (1863.1395 kb) | lagging | 0.326 | |
| 2283 (1865.777 kb) | 2518 (2434.164 kb) | lagging | 0.353 |
More G than C on the leading strand for replication.