Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.
Genome size (bp): 1857073
Number of genes 1696
Oriloc predictions: Origin 0 kb Terminus 901 kb
Worning et al., 2006: Origin 1856 kb Terminus 899 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 873.435 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): NA
Consensus predictions: Origin 0 kb Terminus 901 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 437 | NA | 898 |
| GC-skew reverse | 1228 | NA | 900 |
| AT-skew forward | 444 | NA | 959 |
| AT-skew reverse | 1360 | NA | 1130 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 437 (898.4515 kb) | leading | 0.076 |
| 438 (903.528 kb) | 861 (1855.943 kb) | lagging | -0.107 | |
| GC-skew reverse | 862 (0 kb) | 1228 (900.251 kb) | leading | 0.117 |
| 1229 (900.8235 kb) | 1696 (1855.943 kb) | lagging | -0.077 | |
| AT-skew forward | 1 (0 kb) | 444 (958.9125 kb) | leading | -0.139 |
| 445 (962.156 kb) | 861 (1855.943 kb) | lagging | -0.087 | |
| AT-skew reverse | 862 (0 kb) | 1360 (1130.131 kb) | NA | 0.084 |
| 1361 (1133.4665 kb) | 1696 (1855.943 kb) | lagging | 0.139 |
More G than C on the leading strand for replication.