Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Deltaproteobacteria; Bdellovibrionales; Bdellovibrionaceae; Bdellovibrio.
Genome size (bp): 3782950
Number of genes 3587
Oriloc predictions: Origin 0 kb Terminus 1942 kb
Worning et al., 2006: Origin 3781 kb Terminus 1941 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1679.937 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.71 kb
Consensus predictions: Origin 0 kb Terminus 1942 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1074 | 0 | 1937 |
| GC-skew reverse | 2665 | 0 | 1943 |
| 3108 | 0 | 2853 | |
| 3150 | 0 | 2893 | |
| AT-skew forward | 1083 | 0 | 1963 |
| AT-skew reverse | 2659 | 0 | 1930 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1074 (1937.2435 kb) | leading | 0.07 |
| 1075 (1938.498 kb) | 1885 (3782.767 kb) | lagging | -0.12 | |
| GC-skew reverse | 1886 (0 kb) | 2665 (1942.722 kb) | leading | 0.124 |
| 2666 (1944.3395 kb) | 3108 (2853.187 kb) | lagging | -0.087 | |
| 3109 (2856.749 kb) | 3150 (2893.008 kb) | lagging | 0.087 | |
| 3151 (2893.882 kb) | 3587 (3782.767 kb) | lagging | -0.068 | |
| AT-skew forward | 1 (0 kb) | 1083 (1962.6025 kb) | leading | -0.239 |
| 1084 (1965.6815 kb) | 1885 (3782.767 kb) | lagging | -0.12 | |
| AT-skew reverse | 1886 (0 kb) | 2659 (1930.0265 kb) | leading | 0.118 |
| 2660 (1931.2165 kb) | 3587 (3782.767 kb) | lagging | 0.226 |
More G than C on the leading strand for replication.