Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; typhus group.
Genome size (bp): 1111496
Number of genes 835
Oriloc predictions: Origin 122 kb Terminus 634 kb
Worning et al., 2006: Origin 124 kb Terminus 599 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1111.35 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 763.36 kb
Consensus predictions: Origin 122 kb Terminus 634 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 28 | NA | 136 |
| 119 | NA | 327 | |
| 237 | NA | 595 | |
| 357 | NA | 993 | |
| GC-skew reverse | 610 | NA | 636 |
| AT-skew forward | 66 | NA | 207 |
| 240 | NA | 604 | |
| AT-skew reverse | 607 | NA | 619 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 28 (135.581 kb) | NA | 0.114 |
| 29 (137.78 kb) | 119 (326.534 kb) | leading | 0.33 | |
| 120 (326.9525 kb) | 237 (594.724 kb) | leading | 0.271 | |
| 238 (596.3275 kb) | 357 (992.6385 kb) | lagging | 0.025 | |
| 358 (994.6755 kb) | 387 (1111.113 kb) | lagging | -0.061 | |
| GC-skew reverse | 388 (0 kb) | 610 (635.5125 kb) | NA | -0.027 |
| 611 (637.971 kb) | 835 (1111.113 kb) | lagging | -0.32 | |
| AT-skew forward | 1 (0 kb) | 66 (207.3245 kb) | NA | -0.063 |
| 67 (217.3275 kb) | 240 (604.2805 kb) | leading | -0.098 | |
| 241 (612.5875 kb) | 387 (1111.113 kb) | lagging | -0.021 | |
| AT-skew reverse | 388 (0 kb) | 607 (618.7805 kb) | NA | 0.023 |
| 608 (620.582 kb) | 835 (1111.113 kb) | lagging | 0.076 |
More G than C on the leading strand for replication - for forward encoded genes.