Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
Genome size (bp): 6093698
Number of genes 5089
Oriloc predictions: Origin 0 kb Terminus 3241 kb
Worning et al., 2006: Origin 203 kb Terminus 3261 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 5999.825 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.77 kb
Consensus predictions: Origin 0 kb Terminus 3241 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 507 | NA | 1260 |
| 671 | NA | 1553 | |
| 1372 | NA | 3241 | |
| GC-skew reverse | 3769 | NA | 3135 |
| AT-skew forward | 228 | NA | 567 |
| 1308 | NA | 2973 | |
| 1927 | NA | 4620 | |
| AT-skew reverse | 3760 | NA | 3036 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 507 (1259.662 kb) | leading | -0.031 |
| 508 (1261.2065 kb) | 671 (1553.05 kb) | leading | -0.047 | |
| 672 (1554.1005 kb) | 1372 (3240.5735 kb) | leading | -0.018 | |
| 1373 (3241.4125 kb) | 2536 (6093.114 kb) | lagging | -0.101 | |
| GC-skew reverse | 2537 (0 kb) | 3769 (3135.389 kb) | leading | 0.092 |
| 3770 (3179.9975 kb) | 5089 (6093.114 kb) | lagging | 0.014 | |
| AT-skew forward | 1 (0 kb) | 228 (566.8 kb) | leading | -0.234 |
| 229 (567.354 kb) | 1308 (2972.898 kb) | leading | -0.286 | |
| 1309 (2974.045 kb) | 1927 (4620.3175 kb) | lagging | -0.125 | |
| 1928 (4622.955 kb) | 2536 (6093.114 kb) | lagging | -0.109 | |
| AT-skew reverse | 2537 (0 kb) | 3760 (3036.365 kb) | leading | 0.12 |
| 3761 (3053.0205 kb) | 5089 (6093.114 kb) | lagging | 0.273 |
More G than C on the leading strand for replication.