Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group.
Genome size (bp): 1485148
Number of genes 1399
Oriloc predictions: Origin 40 kb Terminus 905 kb
Worning et al., 2006: Origin 168 kb Terminus 871 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1485.001 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 383.38 kb
Consensus predictions: Origin 40 kb Terminus 905 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 139 | NA | 286 |
| 172 | NA | 318 | |
| 386 | NA | 715 | |
| 571 | NA | 1089 | |
| GC-skew reverse | 1052 | NA | 859 |
| AT-skew forward | 278 | NA | 508 |
| 413 | NA | 763 | |
| AT-skew reverse | 1142 | NA | 1011 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 139 (285.768 kb) | leading | 0.128 |
| 140 (287.461 kb) | 172 (317.733 kb) | leading | 0.328 | |
| 173 (318.771 kb) | 386 (714.772 kb) | leading | 0.21 | |
| 387 (719.6185 kb) | 571 (1089.258 kb) | NA | 0.087 | |
| 572 (1090.091 kb) | 723 (1484.752 kb) | lagging | 0.003 | |
| GC-skew reverse | 724 (0 kb) | 1052 (858.626 kb) | leading | -0.016 |
| 1053 (863.944 kb) | 1399 (1484.752 kb) | lagging | -0.192 | |
| AT-skew forward | 1 (0 kb) | 278 (507.532 kb) | leading | -0.046 |
| 279 (510.006 kb) | 413 (762.74 kb) | leading | -0.082 | |
| 414 (763.515 kb) | 723 (1484.752 kb) | NA | -0.018 | |
| AT-skew reverse | 724 (0 kb) | 1142 (1010.807 kb) | NA | 0.029 |
| 1143 (1013.0145 kb) | 1399 (1484.752 kb) | lagging | 0.053 |