Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; SAR11 cluster; Candidatus Pelagibacter.
Genome size (bp): 1308759
Number of genes 1354
Oriloc predictions: Origin NA Terminus NA
Worning et al., 2006: Origin 335 kb Terminus 996 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 774.747 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 399.58 kb, 704.8 kb
Consensus predictions: Origin 335 kb Terminus 996 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 162 | NA | 376 |
| 480 | NA | 870 | |
| 619 | NA | 1168 | |
| GC-skew reverse | 867 | NA | 326 |
| 1147 | NA | 1040 | |
| AT-skew forward | 146 | NA | 346 |
| 318 | NA | 635 | |
| AT-skew reverse | 831 | NA | 273 |
| 1142 | NA | 1027 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 162 (375.9785 kb) | lagging | 0.048 |
| 163 (377.52 kb) | 480 (869.7445 kb) | leading | 0.113 | |
| 481 (873.2175 kb) | 619 (1168.1975 kb) | NA | 0.02 | |
| 620 (1171.209 kb) | 673 (1308.716 kb) | lagging | 0.099 | |
| GC-skew reverse | 674 (0 kb) | 867 (326.099 kb) | lagging | -0.133 |
| 868 (326.7875 kb) | 1147 (1040.49 kb) | NA | -0.025 | |
| 1148 (1041.505 kb) | 1354 (1308.716 kb) | lagging | -0.07 | |
| AT-skew forward | 1 (0 kb) | 146 (346.3965 kb) | lagging | -0.009 |
| 147 (349.6355 kb) | 318 (634.859 kb) | leading | 0.047 | |
| 319 (635.4895 kb) | 673 (1308.716 kb) | NA | -0.027 | |
| AT-skew reverse | 674 (0 kb) | 831 (272.6625 kb) | lagging | -0.016 |
| 832 (273.5665 kb) | 1142 (1027.0385 kb) | NA | 0.026 | |
| 1143 (1028.139 kb) | 1354 (1308.716 kb) | lagging | 0.017 |