Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.
Genome size (bp): 5178466
Number of genes 4487
Oriloc predictions: Origin 5053 kb Terminus 2855 kb
Worning et al., 2006: Origin 46 kb Terminus 2764 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1768.544 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.66 kb, 2794.39 kb
Consensus predictions: Origin 5053 kb Terminus 2855 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1372 | NA | 2886 |
| GC-skew reverse | 2537 | NA | 777 |
| 3341 | NA | 2783 | |
| AT-skew forward | 1122 | NA | 2241 |
| AT-skew reverse | 3343 | NA | 2784 |
| 3786 | NA | 3641 | |
| 4292 | NA | 4761 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1372 (2885.949 kb) | leading | -0.006 |
| 1373 (2887.2965 kb) | 2223 (5178.224 kb) | lagging | -0.08 | |
| GC-skew reverse | 2224 (0 kb) | 2537 (777.1205 kb) | leading | 0.045 |
| 2538 (783.338 kb) | 3341 (2782.61 kb) | leading | 0.085 | |
| 3342 (2783.0225 kb) | 4487 (5178.224 kb) | lagging | -0.009 | |
| AT-skew forward | 1 (0 kb) | 1122 (2240.5625 kb) | leading | -0.218 |
| 1123 (2240.794 kb) | 2223 (5178.224 kb) | NA | -0.13 | |
| AT-skew reverse | 2224 (0 kb) | 3343 (2783.7165 kb) | leading | 0.113 |
| 3344 (2784.2055 kb) | 3786 (3640.708 kb) | lagging | 0.227 | |
| 3787 (3642.3805 kb) | 4292 (4760.751 kb) | lagging | 0.209 | |
| 4293 (4763.708 kb) | 4487 (5178.224 kb) | NA | 0.18 |
More G than C on the leading strand for replication.