Rearranged Oriloc output example: Previous Index Next
Bacteria; Cyanobacteria; Chroococcales; Synechococcus.
Genome size (bp): 2234828
Number of genes 2307
Oriloc predictions: Origin 0 kb Terminus 1134 kb
Worning et al., 2006: Origin 1 kb Terminus 1119 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 62.754 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 882.38 kb
Consensus predictions: Origin 0 kb Terminus 1134 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 608 | NA | 1153 |
| GC-skew reverse | 1766 | NA | 1076 |
| AT-skew forward | 583 | NA | 1114 |
| AT-skew reverse | 1298 | NA | 195 |
| 1782 | NA | 1137 | |
| 1968 | NA | 1469 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 608 (1153.164 kb) | leading | 0.072 |
| 609 (1153.4995 kb) | 1218 (2234.629 kb) | lagging | -0.155 | |
| GC-skew reverse | 1219 (0 kb) | 1766 (1075.618 kb) | leading | 0.141 |
| 1767 (1081.035 kb) | 2307 (2234.629 kb) | lagging | -0.083 | |
| AT-skew forward | 1 (0 kb) | 583 (1113.88 kb) | leading | -0.307 |
| 584 (1114.4155 kb) | 1218 (2234.629 kb) | lagging | -0.041 | |
| AT-skew reverse | 1219 (0 kb) | 1298 (195.342 kb) | leading | -0.069 |
| 1299 (197.5425 kb) | 1782 (1137.0605 kb) | leading | 0.034 | |
| 1783 (1137.9725 kb) | 1968 (1469.416 kb) | lagging | 0.288 | |
| 1969 (1472.5975 kb) | 2307 (2234.629 kb) | lagging | 0.327 |
More G than C on the leading strand for replication.