Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.
Genome size (bp): 3997420
Number of genes 3519
Oriloc predictions: Origin 146 kb Terminus 1912 kb
Worning et al., 2006: Origin 1 kb Terminus 2032 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 0.211 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.94 kb, 821.02 kb
Consensus predictions: Origin 0 kb Terminus 2032 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1244 | 0 | 2027 |
| GC-skew reverse | 2384 | 0.02667 | 2037 |
| 2627 | 0.02667 | 2456 | |
| 2699 | 0.02667 | 2560 | |
| AT-skew forward | 102 | 0.00667 | 209 |
| 1239 | 0 | 2021 | |
| AT-skew reverse | 1910 | 0.00667 | 237 |
| 2382 | 0 | 2035 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1244 (2027.1055 kb) | leading | -0.084 |
| 1245 (2027.834 kb) | 1831 (3997.4 kb) | lagging | -0.165 | |
| GC-skew reverse | 1832 (0 kb) | 2384 (2036.886 kb) | leading | 0.169 |
| 2385 (2037.6275 kb) | 2627 (2456.311 kb) | lagging | 0.075 | |
| 2628 (2458.008 kb) | 2699 (2560.1135 kb) | lagging | -0.019 | |
| 2700 (2561.3415 kb) | 3519 (3997.4 kb) | lagging | 0.07 | |
| AT-skew forward | 1 (0 kb) | 102 (209.3035 kb) | leading | -0.085 |
| 103 (209.9015 kb) | 1239 (2021.4925 kb) | leading | -0.25 | |
| 1240 (2022.2 kb) | 1831 (3997.4 kb) | lagging | 0.002 | |
| AT-skew reverse | 1832 (0 kb) | 1910 (236.752 kb) | leading | 0.129 |
| 1911 (252.5165 kb) | 2382 (2034.943 kb) | leading | 0.005 | |
| 2383 (2035.767 kb) | 3519 (3997.4 kb) | lagging | 0.229 |
More G than C on the leading strand for replication.