Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.
Genome size (bp): 3730232
Number of genes 3775
Oriloc predictions: Origin 6 kb Terminus 1983 kb
Worning et al., 2006: Origin 8 kb Terminus 1984 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 272.232 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.84 kb, 2337.94 kb
Consensus predictions: Origin 6 kb Terminus 1983 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 470 | 0 | 925 |
| 527 | 0 | 984 | |
| 913 | 0 | 1814 | |
| GC-skew reverse | 2915 | 0 | 1990 |
| AT-skew forward | 468 | 0.01467 | 923 |
| 555 | 0.012 | 1062 | |
| 935 | 0 | 1836 | |
| 1693 | 0.01867 | 3324 | |
| 1770 | 0.012 | 3408 | |
| AT-skew reverse | 2768 | 0 | 1772 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 470 (924.9485 kb) | leading | 0.09 |
| 471 (925.4135 kb) | 527 (984.287 kb) | leading | -0.186 | |
| 528 (984.98 kb) | 913 (1814.0545 kb) | leading | 0.081 | |
| 914 (1815.594 kb) | 1965 (3730.118 kb) | lagging | -0.111 | |
| GC-skew reverse | 1966 (0 kb) | 2915 (1989.514 kb) | leading | 0.112 |
| 2916 (1990.4055 kb) | 3775 (3730.118 kb) | lagging | -0.06 | |
| AT-skew forward | 1 (0 kb) | 468 (922.856 kb) | leading | -0.222 |
| 469 (923.369 kb) | 555 (1061.802 kb) | leading | -0.071 | |
| 556 (1063.891 kb) | 935 (1836.4945 kb) | leading | -0.226 | |
| 936 (1838.0905 kb) | 1693 (3324.1175 kb) | lagging | 0.004 | |
| 1694 (3325.019 kb) | 1770 (3408.031 kb) | lagging | -0.13 | |
| 1771 (3408.3015 kb) | 1965 (3730.118 kb) | lagging | 0.027 | |
| AT-skew reverse | 1966 (0 kb) | 2768 (1771.7605 kb) | leading | 0.001 |
| 2769 (1773.5585 kb) | 3775 (3730.118 kb) | lagging | 0.215 |
More G than C on the leading strand for replication.