Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.
Genome size (bp): 4940217
Number of genes 4372
Oriloc predictions: Origin 174 kb Terminus 2400 kb
Worning et al., 2006: Origin 4698 kb Terminus 2369 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2116.049 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.7 kb, 2375.56 kb
Consensus predictions: Origin 174 kb Terminus 2400 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1109 | NA | 2337 |
| GC-skew reverse | 3115 | NA | 2413 |
| 3560 | NA | 3433 | |
| AT-skew forward | 1131 | NA | 2379 |
| AT-skew reverse | 2647 | NA | 1369 |
| 3082 | NA | 2327 | |
| 4040 | NA | 4267 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1109 (2337.088 kb) | leading | 0.011 |
| 1110 (2339.05 kb) | 2084 (4940.015 kb) | lagging | -0.047 | |
| GC-skew reverse | 2085 (0 kb) | 3115 (2412.9525 kb) | leading | 0.052 |
| 3116 (2413.7015 kb) | 3560 (3432.603 kb) | lagging | -0.026 | |
| 3561 (3435.321 kb) | 4372 (4940.015 kb) | lagging | 0.005 | |
| AT-skew forward | 1 (0 kb) | 1131 (2378.5945 kb) | leading | -0.195 |
| 1132 (2379.2775 kb) | 2084 (4940.015 kb) | lagging | -0.106 | |
| AT-skew reverse | 2085 (0 kb) | 2647 (1369.2405 kb) | leading | 0.105 |
| 2648 (1371.063 kb) | 3082 (2326.8545 kb) | leading | 0.113 | |
| 3083 (2328.3 kb) | 4040 (4267.1945 kb) | lagging | 0.209 | |
| 4041 (4269.2905 kb) | 4372 (4940.015 kb) | lagging | 0.173 |
More G than C on the leading strand for replication.