Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
Genome size (bp): 4381608
Number of genes 4035
Oriloc predictions: Origin 511 kb Terminus 2257 kb
Worning et al., 2006: Origin 4180 kb Terminus 2204 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2031.64 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 371.27 kb, 1562.45 kb
Consensus predictions: Origin NA Terminus NA
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1174 | 0.00667 | 2324 |
| GC-skew reverse | 3008 | 0.00667 | 2226 |
| AT-skew forward | 1186 | 0.00667 | 2342 |
| 1747 | 0.04333 | 3668 | |
| AT-skew reverse | 3024 | 0 | 2257 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1174 (2324.196 kb) | NA | -0.143 |
| 1175 (2324.8915 kb) | 2069 (4381.608 kb) | NA | -0.195 | |
| GC-skew reverse | 2070 (0 kb) | 3008 (2225.8945 kb) | NA | 0.126 |
| 3009 (2227.6095 kb) | 4035 (4381.608 kb) | NA | 0.089 | |
| AT-skew forward | 1 (0 kb) | 1186 (2342.205 kb) | NA | -0.296 |
| 1187 (2342.5785 kb) | 1747 (3668.3385 kb) | NA | -0.197 | |
| 1748 (3673.232 kb) | 2069 (4381.608 kb) | NA | -0.255 | |
| AT-skew reverse | 2070 (0 kb) | 3024 (2257.4205 kb) | NA | 0.213 |
| 3025 (2259.0875 kb) | 4035 (4381.608 kb) | NA | 0.295 |