Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.
Genome size (bp): 3363523
Number of genes 2960
Oriloc predictions: Origin 31 kb Terminus 1677 kb
Worning et al., 2006: Origin 9 kb Terminus 1691 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 3357.362 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): NA
Consensus predictions: Origin 0 kb Terminus 1677 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 841 | NA | 1665 |
| GC-skew reverse | 2103 | NA | 1647 |
| AT-skew forward | 836 | NA | 1660 |
| AT-skew reverse | 2120 | NA | 1692 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 841 (1665.4565 kb) | leading | 0.004 |
| 842 (1666.8515 kb) | 1497 (3363.376 kb) | lagging | -0.075 | |
| GC-skew reverse | 1498 (0 kb) | 2103 (1646.909 kb) | leading | 0.065 |
| 2104 (1649.9635 kb) | 2960 (3363.376 kb) | lagging | -0.002 | |
| AT-skew forward | 1 (0 kb) | 836 (1660.262 kb) | leading | -0.192 |
| 837 (1661.207 kb) | 1497 (3363.376 kb) | lagging | -0.109 | |
| AT-skew reverse | 1498 (0 kb) | 2120 (1692.1305 kb) | leading | 0.11 |
| 2121 (1701.174 kb) | 2960 (3363.376 kb) | lagging | 0.181 |
More G than C on the leading strand for replication.