Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Chromohalobacter.
Genome size (bp): 3696649
Number of genes 3298
Oriloc predictions: Origin 5 kb Terminus 2099 kb
Worning et al., 2006: Origin 3673 kb Terminus 2128 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 3680.112 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.84 kb, 2380.22 kb
Consensus predictions: Origin 3680 kb Terminus 2128 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1057 | 0 | 2107 |
| GC-skew reverse | 2511 | 0 | 2127 |
| AT-skew forward | 986 | 0 | 1956 |
| AT-skew reverse | 2522 | 0 | 2160 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1057 (2106.5855 kb) | leading | -0.021 |
| 1058 (2107.6905 kb) | 1723 (3696.5 kb) | lagging | -0.185 | |
| GC-skew reverse | 1724 (0 kb) | 2511 (2127.0675 kb) | leading | 0.181 |
| 2512 (2128.067 kb) | 3298 (3696.5 kb) | lagging | 0.011 | |
| AT-skew forward | 1 (0 kb) | 986 (1956.3495 kb) | leading | -0.304 |
| 987 (1957.4135 kb) | 1723 (3696.5 kb) | lagging | -0.161 | |
| AT-skew reverse | 1724 (0 kb) | 2522 (2160.1915 kb) | leading | 0.155 |
| 2523 (2161.304 kb) | 3298 (3696.5 kb) | lagging | 0.304 |
More G than C on the leading strand for replication.