Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.
Genome size (bp): 3928089
Number of genes 3601
Oriloc predictions: Origin 3832 kb Terminus 1885 kb
Worning et al., 2006: Origin 3849 kb Terminus 1877 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 3707.605 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.97 kb, 3166.98 kb
Consensus predictions: Origin 3832 kb Terminus 1885 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 984 | NA | 1885 |
| GC-skew reverse | 2546 | NA | 1887 |
| 3131 | NA | 3103 | |
| AT-skew forward | 954 | NA | 1834 |
| AT-skew reverse | 2564 | NA | 1927 |
| 3208 | NA | 3251 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 984 (1885.0875 kb) | leading | 0.002 |
| 985 (1888.968 kb) | 1798 (3927.779 kb) | lagging | -0.082 | |
| GC-skew reverse | 1799 (0 kb) | 2546 (1886.594 kb) | leading | 0.084 |
| 2547 (1889.6505 kb) | 3131 (3102.8595 kb) | lagging | -0.011 | |
| 3132 (3103.964 kb) | 3601 (3927.779 kb) | lagging | 0.006 | |
| AT-skew forward | 1 (0 kb) | 954 (1834.3095 kb) | leading | -0.259 |
| 955 (1837.886 kb) | 1798 (3927.779 kb) | lagging | -0.077 | |
| AT-skew reverse | 1799 (0 kb) | 2564 (1927.077 kb) | leading | 0.082 |
| 2565 (1929.457 kb) | 3208 (3250.8395 kb) | lagging | 0.261 | |
| 3209 (3251.773 kb) | 3601 (3927.779 kb) | lagging | 0.224 |
More G than C on the leading strand for replication.