Rearranged Oriloc output example: Previous Index Next




Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Silicibacter.
Genome size (bp): 3200938
Number of genes 3030
Oriloc predictions: Origin 3030 kb Terminus 1384 kb
Worning et al., 2006: Origin 3012 kb Terminus 1376 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 959.193 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.75 kb, 1957.88 kb
Consensus predictions: Origin 3030 kb Terminus 1384 kb
Significant breakpoints (p-value <0.05):
Breakpoints P-value Chromosome coordinate (kb)
GC-skew forward73701433
142703034
GC-skew reverse20760.0051382
25710.026672260
25960.042302
29520.016673039
AT-skew forward4310843
4490856
6920.033331313
AT-skew reverse21350.011671464
22650.021713
23440.021671825
29360.001672998
Segments:
From (index/coord) To (index/coord) StrandSlope
GC-skew forward 1 (0 kb)737 (1432.5035 kb) leading0.006
738 (1433.265 kb)1427 (3034.0055 kb) lagging-0.1
1428 (3035.889 kb)1514 (3200.382 kb) leading0.05
GC-skew reverse 1515 (0 kb)2076 (1382.016 kb) leading0.113
2077 (1382.5055 kb)2571 (2259.748 kb) lagging-0.014
2572 (2262.852 kb)2596 (2301.6385 kb) lagging-0.093
2597 (2304.402 kb)2952 (3039.458 kb) lagging-0.02
2953 (3040.3865 kb)3030 (3200.382 kb) leading0.073
AT-skew forward 1 (0 kb)431 (843.241 kb) leading-0.284
432 (843.762 kb)449 (855.898 kb) leading-0.121
450 (856.4325 kb)692 (1313.266 kb) leading-0.31
693 (1316.344 kb)1514 (3200.382 kb) lagging-0.223
AT-skew reverse 1515 (0 kb)2135 (1463.669 kb) leading0.208
2136 (1464.8365 kb)2265 (1713.4965 kb) lagging0.318
2266 (1714.12 kb)2344 (1825.3865 kb) lagging0.214
2345 (1826.4625 kb)2936 (2997.5475 kb) lagging0.316
2937 (3000.141 kb)3030 (3200.382 kb) leading0.132
More T than A on the leading strand for replication.
More G than C on the leading strand for replication.