Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.
Genome size (bp): 1196094
Number of genes 1040
Oriloc predictions: Origin 384 kb Terminus 995 kb
Worning et al., 2006: Origin 384 kb Terminus 1001 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 421.149 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): NA
Consensus predictions: Origin 384 kb Terminus 995 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 138 | NA | 333 |
| 493 | NA | 1006 | |
| GC-skew reverse | 752 | NA | 411 |
| 946 | NA | 973 | |
| AT-skew forward | 159 | NA | 387 |
| 205 | NA | 481 | |
| AT-skew reverse | 750 | NA | 404 |
| 942 | NA | 958 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 138 (333.165 kb) | lagging | -0.081 |
| 139 (335.41 kb) | 493 (1006.456 kb) | leading | 0.002 | |
| 494 (1007.875 kb) | 558 (1195.505 kb) | lagging | -0.083 | |
| GC-skew reverse | 559 (0 kb) | 752 (411.3665 kb) | lagging | -0.004 |
| 753 (421.559 kb) | 946 (972.5365 kb) | leading | 0.102 | |
| 947 (974.2945 kb) | 1040 (1195.505 kb) | lagging | 0.017 | |
| AT-skew forward | 1 (0 kb) | 159 (386.861 kb) | lagging | -0.055 |
| 160 (388.7885 kb) | 205 (480.776 kb) | leading | -0.259 | |
| 206 (482.12 kb) | 558 (1195.505 kb) | NA | -0.145 | |
| AT-skew reverse | 559 (0 kb) | 750 (403.8945 kb) | lagging | 0.19 |
| 751 (404.8815 kb) | 942 (958.123 kb) | leading | 0.001 | |
| 943 (961.0035 kb) | 1040 (1195.505 kb) | lagging | 0.171 |
More G than C on the leading strand for replication.