Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter.
Genome size (bp): 1596366
Number of genes 1536
Oriloc predictions: Origin 0 kb Terminus 764 kb
Worning et al., 2006: Origin 1438 kb Terminus 735 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1202.033 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1436.37 kb
Consensus predictions: Origin 0 kb Terminus 764 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 355 | NA | 674 |
| GC-skew reverse | 1073 | NA | 749 |
| AT-skew forward | 623 | NA | 1294 |
| AT-skew reverse | 991 | NA | 542 |
| 1478 | NA | 1469 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 355 (674.13 kb) | leading | 0.043 |
| 356 (674.559 kb) | 762 (1596.29 kb) | lagging | -0.072 | |
| GC-skew reverse | 763 (0 kb) | 1073 (749.406 kb) | leading | 0.079 |
| 1074 (750.4045 kb) | 1536 (1596.29 kb) | lagging | -0.046 | |
| AT-skew forward | 1 (0 kb) | 623 (1293.987 kb) | NA | -0.106 |
| 624 (1294.989 kb) | 762 (1596.29 kb) | lagging | -0.061 | |
| AT-skew reverse | 763 (0 kb) | 991 (541.5705 kb) | leading | 0.066 |
| 992 (542.7915 kb) | 1478 (1469.263 kb) | NA | 0.097 | |
| 1479 (1470.6465 kb) | 1536 (1596.29 kb) | lagging | 0.14 |