Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.
Genome size (bp): 9139763
Number of genes 7330
Oriloc predictions: Origin 0 kb Terminus 4570 kb
Worning et al., 2006: Origin 22 kb Terminus 4540 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 21.429 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.76 kb
Consensus predictions: Origin 0 kb Terminus 4570 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1925 | 0 | 4593 |
| GC-skew reverse | 5371 | 0 | 4568 |
| 6841 | 0.01333 | 8141 | |
| AT-skew forward | 1456 | 0.03 | 3508 |
| 1923 | 0 | 4587 | |
| AT-skew reverse | 5348 | 0 | 4497 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1925 (4592.637 kb) | leading | 0.039 |
| 1926 (4599.503 kb) | 3593 (9139.599 kb) | lagging | -0.064 | |
| GC-skew reverse | 3594 (0 kb) | 5371 (4568.489 kb) | leading | 0.066 |
| 5372 (4569.8415 kb) | 6841 (8141.271 kb) | lagging | -0.038 | |
| 6842 (8148.7405 kb) | 7330 (9139.599 kb) | lagging | -0.085 | |
| AT-skew forward | 1 (0 kb) | 1456 (3508.406 kb) | leading | -0.265 |
| 1457 (3514.6655 kb) | 1923 (4587.3395 kb) | leading | -0.334 | |
| 1924 (4588.032 kb) | 3593 (9139.599 kb) | lagging | -0.083 | |
| AT-skew reverse | 3594 (0 kb) | 5348 (4496.713 kb) | leading | 0.07 |
| 5349 (4521.964 kb) | 7330 (9139.599 kb) | lagging | 0.276 |
More G than C on the leading strand for replication.