Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.
Genome size (bp): 4702289
Number of genes 4167
Oriloc predictions: Origin 112 kb Terminus 1842 kb
Worning et al., 2006: Origin 114 kb Terminus 1838 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 3640.496 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 4667.6 kb
Consensus predictions: Origin 112 kb Terminus 1842 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 953 | 0 | 1848 |
| 1243 | 0.02667 | 2673 | |
| GC-skew reverse | 2756 | 0.00667 | 1835 |
| 3830 | 0.00222 | 4045 | |
| 3928 | 0.00222 | 4251 | |
| AT-skew forward | 818 | 0 | 1593 |
| AT-skew reverse | 2658 | 0 | 1576 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 953 (1848.303 kb) | leading | 0.112 |
| 954 (1849.159 kb) | 1243 (2672.6375 kb) | lagging | -0.041 | |
| 1244 (2674.032 kb) | 2069 (4702.178 kb) | lagging | 0.035 | |
| GC-skew reverse | 2070 (0 kb) | 2756 (1834.717 kb) | leading | 0.023 |
| 2757 (1840.922 kb) | 3830 (4044.832 kb) | lagging | -0.105 | |
| 3831 (4045.8835 kb) | 3928 (4250.703 kb) | lagging | 0.044 | |
| 3929 (4251.1275 kb) | 4167 (4702.178 kb) | lagging | -0.107 | |
| AT-skew forward | 1 (0 kb) | 818 (1592.754 kb) | leading | -0.18 |
| 819 (1594.788 kb) | 2069 (4702.178 kb) | lagging | -0.134 | |
| AT-skew reverse | 2070 (0 kb) | 2658 (1575.5305 kb) | leading | 0.124 |
| 2659 (1579.2835 kb) | 4167 (4702.178 kb) | lagging | 0.182 |
More G than C on the leading strand for replication.