Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.
Genome size (bp): 5187005
Number of genes 4281
Oriloc predictions: Origin 0 kb Terminus 2588 kb
Worning et al., 2006: Origin NA kb Terminus NA kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 4309.437 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.81 kb, 3018.87 kb
Consensus predictions: Origin 0 kb Terminus 2588 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 376 | 0 | 763 |
| 414 | 0 | 811 | |
| 1212 | 0 | 2616 | |
| GC-skew reverse | 2974 | 0 | 2531 |
| AT-skew forward | 377 | 0 | 765 |
| 420 | 0 | 816 | |
| 1167 | 0.02 | 2506 | |
| AT-skew reverse | 2952 | 0 | 2493 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 376 (762.631 kb) | leading | 0.01 |
| 377 (764.6725 kb) | 414 (810.706 kb) | leading | -0.261 | |
| 415 (811.9105 kb) | 1212 (2615.5155 kb) | leading | 0.009 | |
| 1213 (2619.9565 kb) | 2083 (5186.593 kb) | lagging | -0.12 | |
| GC-skew reverse | 2084 (0 kb) | 2974 (2530.8285 kb) | leading | 0.118 |
| 2975 (2533.1345 kb) | 4281 (5186.593 kb) | lagging | -0.02 | |
| AT-skew forward | 1 (0 kb) | 377 (764.6725 kb) | leading | -0.107 |
| 378 (765.0995 kb) | 420 (815.722 kb) | leading | 0.166 | |
| 421 (818.7025 kb) | 1167 (2505.66 kb) | leading | -0.118 | |
| 1168 (2506.3425 kb) | 2083 (5186.593 kb) | lagging | -0.057 | |
| AT-skew reverse | 2084 (0 kb) | 2952 (2493.254 kb) | leading | 0.06 |
| 2953 (2496.9205 kb) | 4281 (5186.593 kb) | lagging | 0.098 |
More G than C on the leading strand for replication.