SUPERKINGDOM PHYLUM CLASS ORDER FAMILY GENUS SPECIES DOMAIN Organism STRAIN SEROVAR SEQUENCING METHOD SEQUENCING DEPTH STRAININFO Culture SYMBIONT TYPE PHYLOGENY SEQUENCING STATUS PROJECT STATUS PHENOTYPE RELEVANCE DISEASE HABITAT PH TEMPERATURE ISOLATION COUNTRY GC(%) AVAILABILITY GOLDSTAMP GOLDSTAMP OLD GREENGENES ID GCAT ID TAXON ID ENTREZ PID IMG OID SIZE(kb) ORFs CHROMOSOMES PLASMIDS DATA DATABASES INSTITUTE FUNDING PUBLICATION DATE CONTACT NAME CONTACT EMAIL Bacteria Thermotogae Thermotogales Thermotogaceae Petrotoga Petrotoga mobilis BACTERIAL Petrotoga mobilis SJ95t ABI, 454 11.4x Genome THERMOTOGAE Complete complete Rod-shaped, Thermophile, Anaerobe, Halotolerant, Motile, Nonsporulating Evolutionary, Biotechnological, Oil industry None Marine, Oil fields Production waters of a North Sea oil reservoir USA 34.1 Public Gc00684 Gi01028 001358_GCAT 403833 17679 640612213 2169 1898 1 0 NC_010003 NCBI Joint Genome Institute DOE Unpublished November 21, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Comamonadaceae Delftia Delftia acidovorans BACTERIAL Delftia acidovorans SPH-1 ABI 12.8x ATCC 15668 Genome PROTEOBACTERIA-BETA Complete complete Aerobe, Mesophile Biotechnological, Wastewater treatment, Oil industry None Soil, Sludge, Oil fields, Aquatic 30 Soil enriched with acetamide in Delft in the Netherlands USA 66 Public Gc00683 Gi01332 001744_GCAT 398578 17413 639857025 6767 6040 1 0 NC_010002 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished November 21, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium phytofermentans BACTERIAL Clostridium phytofermentans ISDg ABI 13x ATCC 700394 Genome FIRMICUTES Complete complete Anaerobe, Cellulolytic, Motile, Rod-shaped, Mesophile, Sporulating Biotechnological, Hydrogen production, Ethanol production, Energy production, Ecological None Soil 37 Forest soil near the Quabbin Reservoir in Massachusetts USA 35.9 Public Gc00682 Gi00162 000967_GCAT 357809 16184 638341067 4847 3902 1 0 NC_010001 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished November 21, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella baltica BACTERIAL Shewanella baltica OS195 ABI 10x Genome PROTEOBACTERIA-GAMMA Complete complete Anaerobe, Rod-shaped, Motile, Facultative Biotechnological None Marine 4 Baltic Sea USA 46 Public Gc00681 Gi00964 001489_GCAT 399599 13389 638341189 5347 4499 1 3 NC_009997 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished November 21, 2007 Richardson P microbes@cuba.jgi-psf.org Eukaryota unclassified unclassified unclassified Hemiselmis Hemiselmis andersenii EUKARYAL Hemiselmis andersenii CCMP644 (nucleomorph) Genome PROTISTS Complete complete Evolutionary Canada Public Gc00680 002361_GCAT 464988 571 3 NC_009977, NC_009978, NC_009979 Dalhousie Univ PNAS in press November 16, 2007 Archibald JM http://myweb.dal.ca/jmarchib/ Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus MIT 9211 ABI Genome CYANOBACTERIA Complete complete Nonmotile, Carbon cycle, Mesophile Environmental, MMI None Marine Equatorial Pacific at a depth of 83m USA 39 Public Gc00679 Gi00872 001368_GCAT 93059 13551 638341154 1688 1855 1 0 NC_009976 NCBI, JCVI J Craig Venter Institute, MIT Moore Foundation Unpublished November 13, 2007 Chisholm S http://csbi.mit.edu/faculty/Members/PennyChisholm Archaea Euryarchaeota Methanococcales Methanococcaceae Methanococcus Methanococcus maripaludis ARCHAEAL Methanococcus maripaludis C6 Genome EURYARCHAEOTA-METHANOCOCCI Complete complete Methanogen, Motile, Obligate anaerobe, Nonsporulating, Hydrogenotrophic, Nitrogen fixation, Lithotroph, Mesophile Biotechnological, Energy production None Aquatic, Sediment 6.5 - 8 20 - 45 Intertidal sediments USA 33 Public Gc00678 Gi01307 001820_GCAT 444158 19639 1744 1826 1 0 NC_009975 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished November 13, 2007 Whitman WB whitman@uga.edu Bacteria Chloroflexi Herpetosiphonales Herpetosiphonaceae Herpetosiphon Herpetosiphon aurantiacus BACTERIAL Herpetosiphon aurantiacus ATCC 23779 ABI 11x DSM 785, ATCC 23779 Genome CHLOROFLEXI Complete complete Filament-shaped, Motile, Aerobe, Mesophile Biotechnological None Aquatic Birch Lake in Minnesota USA 50 Public Gc00677 Gi00947 001142_GCAT 316274 16523 638341105 6346 4976 1 2 NC_009972 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished November 13, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Myxococcales Polyangiaceae Sorangium Sorangium cellulosum BACTERIAL Sorangium (Polyangium) cellulosum So ce56 Genome PROTEOBACTERIA-DELTA Complete complete Biotechnological None Germany Public Gc00676 Gi00561 001504_GCAT 56 13033 Bielefeld Univ Bielefeld Univ BMBF Nat Biotechnol. Epub October 28, 2007 Muller R rom@mx.uni-saarland.de Eukaryota Ascomycota Saccharomycetales unclassified Candida Candida albicans EUKARYAL Candida albicans SC5314 ABI 10.9x Genome FUNGI-ASCOMYCOTA Quality Draft complete Pathogen Medical, Human Pathogen Oral infection, Vaginal infection USA Public Gc00675 Gi00126 001975_GCAT 237561 10701 640281004 14855 6354 8 0 AACQ00000000 NCBI, Stanford Univ, Institut Pasteur, CandidaDB Stanford Univ Burroughs Wellcome Fund, NIH-NIDCR PNAS 101, 7329-34 May 11, 2004 Davis RW Dbowe@sequence.stanford.edu Archaea Crenarchaeota Thermoproteales Thermoproteaceae Caldivirga Caldivirga maquilingensis ARCHAEAL Caldivirga maquilingensis IC-167 ABI DSM 13496 Genome CRENARCHAEOTA-THERMOPROTEI Complete complete Hyperthermophile, Heterotroph, Aerobe, Rod-shaped, Nonmotile, Nonsporulating Biotechnological None Aquatic 85 Acidic hot spring in the Philippines USA 43 Public Gc00674 Gi01059 001815_GCAT 397948 17421 640196211 2077 1963 1 0 NC_009954 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished October 5, 2007 House C chouse@geosc.psu.edu Bacteria Actinobacteria Actinomycetales Micromonosporaceae Salinispora Salinispora arenicola BACTERIAL Salinispora arenicola CNS205 ABI 11.4x Genome ACTINOBACTERIA Complete complete Filament-shaped, Sporulating, Motile, Aerobe, Mesophile Biotechnological, Medical, Cancer treatment None Aquatic, Marine, Sediment Beach sand at a depth of 1 meter from Sweetings Cay in the Bahamas USA 69.5 Public Gc00673 Gi01541 001441_GCAT 391037 17109 639857040 5786 4917 1 0 NC_009953 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished October 5, 2007 Jensen P pjensen@ucsd.edu Bacteria Proteobacteria Desulfobacterales Desulfobacteraceae Desulfococcus Desulfococcus oleovorans BACTERIAL Desulfococcus oleovorans Hxd3 ABI, 454 12x DSM 6200 Genome PROTEOBACTERIA-DELTA Complete complete Sulfate reducer, Alkane degrader, Nonmotile, Nonsporulating, Coccus-shaped, Anaerobe, Mesophile Biotechnological, Environmental None Aquatic, Oil fields Oil tank USA 56.1 Public Gc00672 Gi01334 001746_GCAT 96561 18007 640196200 3944 3265 1 0 NC_009943 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished October 19, 2007 Richardson P microbes@cuba.jgi-psf.org Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Kluyveromyces Kluyveromyces waltii EUKARYAL Kluyveromyces waltii NCYC 2644 ABI 8x Genome FUNGI-ASCOMYCOTA Quality Draft complete Evolutionary, FGI None USA Public Gc00671 Gi00717 002033_GCAT 262981 10734 11000 5230 8 0 AADM010000000 NCBI Broad Institute Nature 428, 617-24 April 8, 2004 Kellis, M manoli@mit.edu Eukaryota Apicomplexa unclassified Babesiidae Babesia Babesia bovis EUKARYAL Babesia bovis T2Bo ABI 11x Genome PROTISTS-APICOMPLEXA Quality Draft complete USA 41.8 Public Gc00670 Gi02145 002797_GCAT 5865 18731 8200 3671 4 AAXT00000000 TIGR USDA PLoS Pathog 3, e148 October 19, 2007 Nene VM vnene@som.umaryland.edu Bacteria Proteobacteria Rhizobiales Xanthobacteraceae Azorhizobium Azorhizobium caulinodans BACTERIAL Azorhizobium caulinodans ORS 571 Sesbania rostrata Genome PROTEOBACTERIA-ALPHA Complete complete Nitrogen fixation, Mesophile Agricultural None Host Sesbania rostrata Japan Public Gc00669 Gi01986 002615_GCAT 438753 19267 5369 4717 1 0 NC_009937 NCBI Univ of Tokyo Unpublished October 17, 2007 Oyaizu H aoyaizu@mail.ecc.u-tokyo.ac.jp Eukaryota unclassified unclassified Hexamitidae Giardia Giardia intestinalis EUKARYAL Giardia lamblia (intestinalis) WB, clone C6 ABI ATCC 50803 Genome PROTISTS-DIPLOMONADIDA Quality Draft complete USA 49 Public Gc00668 Gi00274 001866_GCAT 184922 1439 640281002 11192 13100 5 0 NZ_AACB00000000 NCBI, MBL Marine Biological Laboratory NIH-NIAID Science 317, 1921-6 October 1, 2007 Sogin ML http://hermes.mbl.edu/labs/Sogin/Pages/PERSONNEL/Mitch.html Bacteria Cyanobacteria unclassified unclassified Acaryochloris Acaryochloris marina BACTERIAL Acaryochloris marina MBIC11017 ABI, 454 6x-ABI, 24x-454 Genome CYANOBACTERIA Complete complete Photosynthetic, Symbiont, Aerobe, Sphere-shaped, Mesophile, Mesophile Biotechnological None Marine Colonial ascidian from the Palau Islands USA Public Gc00667 Gi00728 000610_GCAT 329726 12997 6503 6254 1 9 NC_009925 NCBI, TGen Washington Univ, Arizona State Univ, TGen NSF Unpublished October 17, 2007 Blankenship RE Blankenship@asu.edu Bacteria Firmicutes Clostridiales Clostridiaceae Alkaliphilus Alkaliphilus oremlandii BACTERIAL Alkaliphilus (Clostridium) oremlandii OhILAs ABI, 454 12x Genome FIRMICUTES Complete incomplete Anaerobe, Nitrogen fixation, Sporulating, Rod-shaped, Motile, Sporulating, Non-Pathogen, Arsenic metabolizer, Mesophile Biotechnological, Environmental None Aquatic Ohio River sediment USA 36 Public Gc00666 Gi00933 000972_GCAT 350688 16083 638341068 2123 2836 1 0 NC_009922 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished October 11, 2007 Richardson P microbes@cuba.jgi-psf.org Eukaryota Streptophyta Vitales Vitaceae Vitis Vitis vinifera EUKARYAL Vitis vinifera PN40024 ABI 8.4x Genome PLANTS-STREPTOPHYTA Quality Draft incomplete France Public Gc00665 Gi01530 002312_GCAT 29760 18785 475000 CAAP00000000 NCBI, Genoscope Genoscope, INRA, Univ of Padua, Univ of Milan, Univ of Udine Nature 449, 463-7 September 27, 2007 Wincker P pwincker@genoscope.cns.fr Eukaryota Chlorophyta Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii EUKARYAL Chlamydomonas reinhardtii CC-503 cw92 mt+ ABI 10x Genome PLANTS-CHLOROPHYTA Quality Draft incomplete Massachusetts in 1945 USA 65 Public Gc00664 Gi00816 002199_GCAT 3055 12260 100000 15256 17 0 ABCN00000000 NCBI, Joint Genome Institute, Chlamydomonas Center Joint Genome Institute DOE, NSF Science 318, 245-50 October 12, 2007 Grossman A arthur@andrew2.stanford.edu Bacteria Proteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella halifaxensis BACTERIAL Shewanella pealeana ANG-SQ1 ABI 10x ATCC 700345 Genome PROTEOBACTERIA-GAMMA Complete complete Facultative, Psychrotolerant, Motile, Rod-shaped, Mesophile None Host Microbial community colonizing the accessory nidamental gland of the squid Loligo pealei USA 44 Public Gc00663 Gi01355 001772_GCAT 3055 17415 639857031 5174 4241 1 0 NC_009901 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished October 4, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia massiliae BACTERIAL Rickettsia massiliae MTU5 ATCC VR-1376 Genome PROTEOBACTERIA-ALPHA Complete complete Non-Pathogen, Aerobe, Nonmotile, Nonsporulating, Obligate parasite, Mesophile Medical None Host Rhipicephalus turanicus ticks collected near Marseille France France 32.5 Public Gc00662 Gi00812 001423_GCAT 416276 18271 1360 968 1 1 NC_009900 NCBI CNRS CNRG Unpublished October 4, 2007 Raoult D didier.raoult@medecine.univ-mrs.fr Bacteria Proteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia bellii BACTERIAL Rickettsia bellii OSU 85-389 ABI Dermacentor variabilis adult female tick Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Aerobe, Nonmotile, Nonsporulating, Obligate parasite, Mesophile Medical, Human Pathogen Epidemic typhus Host Isolated in Vero cell culture at 34 C by Karl Poetter and Chip Pretzman; spaghetti forms seen USA 31.6 Public Gc00661 Gi01647 001420_GCAT 391896 17237 640753044 1528 1476 1 0 NC_009883 NCBI Univ of Iowa Unpublished October 2, 2007 Bacteria Proteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia canadensis BACTERIAL Rickettsia canadensis McKiel ABI Tick Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Aerobe, Nonmotile, Nonsporulating, Obligate parasite, Mesophile Medical, Human Pathogen Epidemic typhus Host Ticks in Canada USA 31 Public Gc00660 Gi01536 001421_GCAT 293613 12952 640753045 1159 1093 1 0 NC_009879 NCBI Univ of Iowa Unpublished October 1, 2007 Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Dinoroseobacter Dinoroseobacter shibae BACTERIAL Dinoroseobacter shibae DFL-12 ABI 12x DSM 16493, NCIMB 14021 Genome PROTEOBACTERIA-ALPHA Complete complete Aerobe, Anoxygenic, Phototroph, Motile, Mesophile None Aquatic 33 Marine dinoflagellates from the Bay of Tokyo USA 65 Public Gc00659 Gi01335 001747_GCAT 398580 17417 639857026 3789 3577 1 5 NC_009952 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished October 5, 2007 Wagner-Dobler I Irene.Wagner-Doebler@helmholtz-hzi.de Bacteria Actinobacteria Actinomycetales Frankiaceae Frankia Frankia sp. EAN1pec BACTERIAL Frankia sp. Mbj2, EAN1pec ABI Plants Genome ACTINOBACTERIA Complete complete Aerobe, Mesophile, Chemoorganotroph, Nitrogen fixation, Non-Pathogen, Plant symbiont, Mesophile Biotechnological None Soil Kettering Research Laboratory in Ohio by M Lalonde in 1978 USA 70.9 Public Gc00658 Gi00260 001091_GCAT 298653 8982 638341096 9035 7191 1 0 NC_009921 NCBI, Joint Genome Institute, FrankiaGenomes Joint Genome Institute DOE Unpublished October 10, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Campylobacterales Campylobacteraceae Arcobacter Arcobacter butzleri BACTERIAL Arcobacter butzleri RM4018 ABI Genome PROTEOBACTERIA-EPSILON Complete complete Pathogen, Aerobe, Motile, Nonsporulating, Spiral-shaped, Mesophile Medical, Human Pathogen Gastroenteritis, Bacteremia Host, Aquatic, Marine Human patient with gastroenteritis USA Public Gc00657 003099_GCAT 367737 16319 640753004 2341 2259 1 0 NC_009850 NCBI Agencourt Bioscience, ARS-USDA USDA Unpublished September 27, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus pumilus BACTERIAL Bacillus pumilus SAFR-032 Genome FIRMICUTES Complete complete Sporulating, Radiation resistant, Pathogen, Rod-shaped, Motile, Aerobe, Mesophile Medical None Soil Spacecraft Assembly Facility at NASA Jet Propulsion Laboratory USA Public Gc00656 Gi00716 000741_GCAT 315750 20391 3704 3681 1 0 NC_009848 NCBI, BCM-HGSC BCM-HGSC NSF PLoS ONE 2, e928 September 26, 2007 Weinstock G gwstock@bcm.tmc.edu Eukaryota Chordata Primates Hominidae Homo Homo sapiens EUKARYAL Homo sapiens JC Venter ABI 7.5x Genome CHORDATA-PRIMATES Quality Draft complete Caucasian, Male, Mesophile, Aerobe Medical 36 Sperm and white blood cells of a single Human individual USA Public Gc00655 Gi02160 002812_GCAT 9606 19621 2782357 24 0 ABBA01000000 NCBI, Ensembl J Craig Venter Institute PLoS Biology 5, e254 September 21, 2007 Levy S slevy@jcvi.org Eukaryota Ascomycota Hypocreales Nectriaceae Gibberella Gibberella zeae EUKARYAL Fusarium (Gibberella) graminearum (zeae) PH-1 ABI 10x NRRL 31084 Genome FUNGI-ASCOMYCOTA Quality Draft complete Pathogen, Mycotoxin producer, Mesophile Agricultural, Plant Pathogen, FGI Head blight USA Public Gc00654 Gi00263 002010_GCAT 229533 13839 640281006 36000 4 0 AACM02000000 NCBI, Broad Institute Broad Institute, IGGR NRI Science 317, 1400-2 September 7, 2007 Webmaster annotation-info@genome.wi.mit.edu Eukaryota Nematoda Spirurida Onchocercidae Brugia Brugia malayi EUKARYAL Brugia malayi NIAID/TRS ABI Genome NEMATODES Quality Draft complete Mesophile USA Public Gc00653 Gi00102 002123_GCAT 6279 10729 90000 11500 6 0 AAQA00000000 NCBI, TIGR, NematodeNet, TIGR TIGR, Univ of Pittsburgh NIH-NIAID Science 317, 1756 - 1760 September 21, 2007 Ghedin E GhedinE@dom.pitt.edu Bacteria Proteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni jejuni 81116 ABI NCTC 11828 Genome PROTEOBACTERIA-EPSILON Complete complete Motile, Spiral-shaped, Pathogen, Food poisoning, Mesophile Medical, Human Pathogen Food poisoning Wastewater Waterborne outbreak in 1982 United Kingdom 30 Public Gc00652 Gi01671 000823_GCAT 407148 17953 640753013 1628 1626 1 0 NC_009839 NCBI BBSRC Institute of Food Research J. Bacteriology Epub September 20, 2007 Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus MIT 9215 ABI Genome CYANOBACTERIA Complete complete Nonmotile, Carbon cycle, Mesophile Environmental None Marine USA Public Gc00651 Gi01896 001369_GCAT 93060 18633 640753041 1738 1983 1 0 NC_009840 NCBI Joint Genome Institute DOE Unpublished September 20, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Chloroflexi Chloroflexales Chloroflexaceae Roseiflexus Roseiflexus castenholzii BACTERIAL Roseiflexus castenholzii HLO8, DSM 13941 ABI 10x DSM 13941 Genome CHLOROFLEXI Complete complete Filament-shaped, Photosynthetic, Thermophile, Facultative, Motile, Photoautotroph Biotechnological None Marine, Hot spring 50 Hot spring microbial mat USA 60.7 Public Gc00650 Gi00962 001429_GCAT 120962 13462 640753047 5723 4330 1 0 NC_009767 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished August 13, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga lettingae BACTERIAL Thermotoga lettingae TMOT ABI Genome THERMOTOGAE Complete complete Rod-shaped, Thermophile, Anaerobe, Heterotroph, Motile, Nonsporulating, Methanol degrading Evolutionary, Biotechnological None Aquatic 65 Methanol-degrading, sulfate-reducing bioreactor USA 38.7 Public Gc00649 Gi01044 001609_GCAT 416591 15644 2135 2040 1 0 NC_009828 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished September 18, 2007 Richardson P microbes@cuba.jgi-psf.org Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Vanderwaltozyma Vanderwaltozyma polyspora EUKARYAL Vanderwaltozyma polyspora DSM 70294 ABI 7.8x DSM 70294 Genome FUNGI-ASCOMYCOTA Quality Draft complete Mesophile Evolutionary Ireland 33 Public Gc00648 Gi02041 002688_GCAT 436907 19237 14661 5367 NZ_AAZN00000000 NCBI Trinity College PNAS 104, 8397-8402 August 17, 2007 Wolfe KH http://wolfe.gen.tcd.ie/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Serratia Serratia proteamaculans BACTERIAL Serratia proteamaculans 568 ABI 11.7x Genome PROTEOBACTERIA-GAMMA Complete complete Facultative, Motile, Rod-shaped, Aerobe, Pathogen, Mesophile Medical, Human Pathogen, Environmental, Bioremediation Pneumonia Host, Soil USA 55 Public Gc00647 Gi01353 001770_GCAT 399741 17459 640753048 5448 4891 1 1 NC_009832 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished September 18, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella sediminis BACTERIAL Shewanella sediminis HAW-EB3T ABI NCIMB 14036, DSM 17055 Genome PROTEOBACTERIA-GAMMA Complete complete Facultative, Psychrophile, Motile, Rod-shaped, Nonsporulating Biotechnological, Degrades RDX None Marine 10 Sediment at depth of 215m from an unexploded-ordinance-dumping site at Halifax USA 46 Public Gc00646 Gi01356 001773_GCAT 425104 18789 640753050 5517 4497 1 0 NC_009831 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished September 18, 2007 Richardson P microbes@cuba.jgi-psf.org Eukaryota Cnidaria Actiniaria Edwardsiidae Nematostella Nematostella vectensis EUKARYAL Nematostella vectensis CH2 x CH6 ABI 7.8x Genome CNIDARIA Quality Draft complete Mesophile Model organism USA 40.6 Public Gc00645 Gi00773 002244_GCAT 45351 12581 297398 NZ_ABAV00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Science 317, 86-94 August 22, 2007 Rokhsar D http://mcb.berkeley.edu/faculty/GEN/rokhsard.html Bacteria Proteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus BACTERIAL Campylobacter concisus 13826 ABI Genome PROTEOBACTERIA-EPSILON Complete complete Motile, Spiral-shaped, Pathogen, Food poisoning, Nonsporulating, Mesophile Medical, Human Pathogen Gingivitis, Periodontitis, Periodontosis, Gastroenteritis Host, Wastewater Feces of a patient with bloody diarrhea in Denmark USA 39.3 Public Gc00644 Gi01266 000829_GCAT 360104 17159 640753009 2052 1929 1 2 NC_009802 NCBI, TIGR TIGR NIH-NIAID Unpublished September 12, 2007 Nelson KE http://www.tigr.org/~kenelson/ Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus gordonii BACTERIAL Streptococcus gordonii Challis CH1 ATCC 35105, NCTC7868 Genome FIRMICUTES Complete complete Pathogen, Nonmotile, Nonsporulating, Facultative, Coccus-shaped, Mesophile Medical, Human Pathogen Dental plaque, Endocarditis, Periodontal infection Human oral microflora, Host 37 USA 42 Public Gc00643 Gi00608 001537_GCAT 467705 66 640753055 2196 2051 1 0 NC_009785 NCBI TIGR NIH-NIDCR Unpublished September 11, 2007 Gill SR srgill@tigr.org Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Citrobacter Citrobacter koseri BACTERIAL Citrobacter koseri CDC 4225-83 ABI 8x ATCC BAA-895, SGSC4696 Genome PROTEOBACTERIA-GAMMA Complete incomplete Facultative, Motile, Pathogen, Mesophile Medical, Human Pathogen, Animal Pathogen Bacteremia, Meningoencephalitis, Neonatal meningitis, Brain abscesses Soil, Aquatic, Food, Intestinal microflora, Host 1983 in Maryland where it caused neonatal meningitis USA Public Gc00642 Gi00708 000962_GCAT 290338 12716 640753015 4720 5003 1 2 NC_009792 NCBI, Washington Univ Washington Univ NIH-NIAID Unpublished September 11, 2007 Clifton S sclifton@watson.wustl.edu Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O139:H28 E24377A (ETEC) O139:H28 ABI Genome PROTEOBACTERIA-GAMMA complete complete Pathogen, Enterotoxigenic, Rod-shaped, Motile, Facultative, Nonsporulating, Mesophile Medical, Human Pathogen Diarrhea Host, Human intestinal microflora 37 USA 50 Public Gc00641 Gi00940 001030_GCAT 331111 13960 640753024 4979 4755 1 6 NC_009801 NCBI TIGR Unpublished September 11, 2007 Ravel J http://www.tigr.org/faculty/Ravel_Jacques/index.shtml Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O9 HS O9 ABI Genome PROTEOBACTERIA-GAMMA complete complete Rod-shaped, Motile, Facultative, Pathogen, Nonsporulating, Mesophile Medical, Human Pathogen Diarrhea Host, Human intestinal microflora Walter Reed Army Institute of Research in 1978 USA 50 Public Gc00640 Gi01140 001037_GCAT 331112 13959 640753025 4643 4384 1 0 NC_009800 NCBI TIGR NIH-NIAID Unpublished September 10, 2007 Ravel J http://www.tigr.org/faculty/Ravel_Jacques/index.shtml Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus Mu3 Genome FIRMICUTES complete complete Pathogen, Nonmotile, Facultative, Coccus-shaped, Nonsporulating, Mesophile Medical, Human Pathogen, Animal Pathogen, Cattle Pathogen, Poultry Pathogen Mastitis, Nosocomial infection Host 30 - 37 Japan Public Gc00639 003050_GCAT 418127 18509 640753053 2880 2698 1 0 NC_009782 NCBI, Juntendo Univ Juntendo Univ Unpublished September 4, 2007 Hiramatsu K khiram06@med.juntendo.ac.jp Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Cronobacter Enterobacter sakazakii BACTERIAL Enterobacter sakazakii ATCC BAA-894 ABI 8x ATCC BAA-894 Genome PROTEOBACTERIA-GAMMA complete complete Facultative, Pathogen, Rod-shaped, Motile, Anaerobe, Mesophile Medical, Human Pathogen Meningitis, Septicemia, Necrotizing enterocolitis Host 37 Powdered milk formula fed to a hospitalized neonate that developed an infection USA 87 Public Gc00638 Gi00537 001451_GCAT 290339 12720 640753022 4368 4277 1 2 NC_009778 NCBI, Washington Univ Washington Univ NIH-NIAID Unpublished August 28, 2007 Clifton S sclifton@watson.wustl.edu Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio harveyi BACTERIAL Vibrio harveyi BB120, ATCC BAA-1116 ABI, 454 10.8x ATCC BAA-1116 Genome PROTEOBACTERIA-GAMMA complete complete Bioluminescent, Rod-shaped, Motile, Facultative, Mesophile Environmental None Marine 20 - 30 Ocean isolate obtained in 1993 USA 85 Public Gc00637 Gi01254 001691_GCAT 669 19857 5969 5944 2 1 NC_009783, NC_009784 NCBI, Washington Univ Princeton Univ, Washington Univ NSF Unpublished August 28, 2007 Bassler B http://www.molbio.princeton.edu/research_facultymember.php?id=5 Archaea Crenarchaeota Desulfurococcales Desulfurococcaceae Ignicoccus Ignicoccus hospitalis ARCHAEAL Ignicoccus hospitalis Kin4/I ABI 12x DSM 18386 Nanoarchaeum equitans Genome CRENARCHAEOTA-THERMOPROTEI complete complete Hyperthermophile, Chemolithoautotroph, Coccus-shaped, Nonsporulating, Motile, Anaerobe Biotechnological None Marine, Hydrothermal vent Shallow marine hydrothermal system of the Kolbeinsey Ridge, north of Iceland USA 61.2 Public Gc00636 Gi01875 001809_GCAT 453591 13914 640062401 1297 1434 1 0 NC_009776 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished August 29, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis holarctica FTA ABI Genome PROTEOBACTERIA-GAMMA complete complete Pathogen, Nonmotile, Aerobe, Coccus-shaped, Nonsporulating, Mesophile Medical, Human Pathogen, Biothreat Tularemia Host, Aquatic Patient with type B tularemia USA 32 Public Gc00635 Gi02287 003009_GCAT 458234 20197 640753028 1890 2079 1 0 NC_009749 NCBI Joint Genome Institute, Los Alamos National Laboratory, BioHealthBase Unpublished August 23, 2007 Brettin T brettin@lanl.gov unclassified unclassified unclassified unclassified unclassified unclassified BACTERIAL Coxiella burnetii Dugway 7E9-12 ABI Genome PROTEOBACTERIA-GAMMA complete complete Pathogen, Facultative, Motile, Mesophile Medical, Human Pathogen, Biothreat, Animal Pathogen Q fever, Food poisoning Host Rodents in Utah USA 42 Public Gc00634 Gi01269 000983_GCAT 382253 16721 640753021 2158 2058 1 1 NC_009727 NCBI, TIGR TIGR NIH-NIAID Unpublished August 1, 2007 Samuel JE jsamuel@medicine.tamhsc.edu Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus amyloliquefaciens BACTERIAL Bacillus amyloliquefaciens FZB42 Genome FIRMICUTES complete complete Rhizosphere-colonizing, Rod-shaped, Sporulating, Aerobe, Mesophile Biotechnological, Antibiotic production, Suppresses Plant Pathogens, Agricultural None Soil Soil Germany 46 Public Gc00633 Gi00049 000711_GCAT 326423 13403 640753005 3918 3693 1 0 NC_009725 NCBI, Goettingen Genomics Laboratory Competence Network, Goettingen Genomics Laboratory Nature Biotechnol 25, 1007-14 August 1, 2007 Borriss R rainer.borriss@rz.hu-berlin.de Bacteria Proteobacteria Rhizobiales Xanthobacteraceae Xanthobacter Xanthobacter autotrophicus BACTERIAL Xanthobacter autotrophicus Py2 ABI 12x ATCC 35674, DSM 432 Genome PROTEOBACTERIA-ALPHA complete complete Nitrogen fixation, Rod-shaped, Facultative, Motile, Mesophile Environmental, Bioremediation None Soil, Aquatic, Sediment USA 67 Public Gc00632 Gi00972 001697_GCAT 78245 15756 640753059 5308 4746 1 1 NC_009720 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished July 30, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Phyllobacteriaceae Parvibaculum Parvibaculum lavamentivorans BACTERIAL Parvibaculum lavamentivorans DS-1 ABI 17.5x DSM 13023, NCIMB 13966 Genome PROTEOBACTERIA-ALPHA complete complete Heterotroph, Rod-shaped, Aerobe, Motile, Surfactant-degrading, Mesophile Biotechnological, Bioremediation None Sludge 30 Sewage treatment plant in Germany USA 62 Public Gc00631 Gi01347 001764_GCAT 402881 17639 640753040 3914 3636 1 0 NC_009719 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished July 30, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Thermotogae Thermotogales Thermotogaceae Fervidobacterium Fervidobacterium nodosum BACTERIAL Fervidobacterium nodosum Rt17-B1 ABI 11.5x Genome THERMOTOGAE Complete complete Rod-shaped, Thermophile, Anaerobe, Chemoorganotroph, Motile, Nonsporulating Evolutionary, Biotechnological None Aquatic, Hot spring 70 Hot spring in New Zealand USA 34 Public Gc00630 Gi01012 001054_GCAT 381764 16719 640753026 1948 1750 1 0 NC_009718 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished July 30, 2007 Richardson P microbes@cuba.jgi-psf.org Archaea Euryarchaeota Methanomicrobiales unclassified Candidatus Methanoregula Candidatus Methanoregula boonei ARCHAEAL Candidatus Methanoregula boonei 6A8 ABI Genome EURYARCHAEOTA-METHANOMICROBIA Complete complete Methanogen, Acidophile, Anaerobe, Rod-shaped, Mesophile, Lithotroph Biotechnological, Energy production None Aquatic 4-6 37 Acidic peat bog in New York State USA 54 Public Gc00629 Gi01473 001806_GCAT 456442 18505 640753014 2542 2450 1 0 NC_009712 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished July 26, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter curvus BACTERIAL Campylobacter curvus 525.92 ABI Genome PROTEOBACTERIA-EPSILON Complete complete Motile, Spiral-shaped, Pathogen, Food poisoning, Mesophile Medical, Human Pathogen Gastroenteritis, Periodontal infection Host, Wastewater Feces of a patient with diarrhea in South Africa USA 44 Public Gc00628 Gi01267 000830_GCAT 360105 17161 640753010 1971 1931 1 0 NC_009715 NCBI, TIGR J Craig Venter Institute NIH-NIAID Unpublished July 25, 2007 Nelson K http://www.tigr.org/~kenelson/ Bacteria Proteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter hominis BACTERIAL Campylobacter hominis ATCC BAA-381 ABI ATCC BAA-381, NCTC 13146T, LMG 19568T Genome PROTEOBACTERIA-EPSILON Complete complete Nonmotile, Rod-shaped, Non-Pathogen, Nonsporulating, Mesophile Medical None Host, Gastrointestinal tract 37 Feces of a healthy human in 2001 USA 31 Public Gc00627 Gi01268 000831_GCAT 360107 20083 640753011 1711 1682 1 1 NC_009714 NCBI, TIGR J Craig Venter Institute NIH-NIAID Unpublished July 25, 2007 Nelson K http://www.tigr.org/~kenelson/ Bacteria Proteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni doylei 269.97 ABI Genome PROTEOBACTERIA-EPSILON Complete complete Motile, Spiral-shaped, Pathogen, Food poisoning, Mesophile Medical, Human Pathogen, Animal Pathogen, Poultry Pathogen Bacteremia Host, Wastewater, Blood Human blood USA 30 Public Gc00626 Gi01293 000828_GCAT 360109 17163 640753012 1845 1731 1 0 NC_009707 NCBI, TIGR TIGR NIH-NIAID Unpublished July 20, 2007 Nelson K http://www.tigr.org/~kenelson/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pseudotuberculosis BACTERIAL Yersinia pseudotuberculosis IP 31758 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Facultative, Motile, Rod-shaped, Mesophile Medical, Human Pathogen Gastroenteritis, Food poisoning Host Stools of a patient presenting with scarlet-like fever in the Primorski region of the former USSR on 1996 USA 47 Public Gc00625 Gi01174 001723_GCAT 349747 16070 640753060 4723 4124 1 2 NC_009708 NCBI TIGR NIH-NIAID PLoS Genetics 3(8), e142 July 23, 2007 Ravel J http://www.tigr.org/faculty/Ravel_Jacques/index.shtml Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium kluyveri BACTERIAL Clostridium kluyveri DSM 555 DSM 555 Genome FIRMICUTES Complete complete Rod-shaped, Sporulating, Motile, Anaerobe, Sporulating, Mesophile Biotechnological None Aquatic, Mud Mud Germany Public Gc00624 Gi01951 002577_GCAT 431943 19065 640753020 3964 3838 1 1 NC_009706 NCBI Goettingen Genomics Laboratory Unpublished July 19, 2007 Thauer RK thauer@mpi-marburg.mpg.de Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum A ATCC 19397 ATCC 19397 Genome FIRMICUTES Complete complete Pathogen, Obligate anaerobe, Sporulating, Motile, Chemoorganotroph, Rod-shaped, Mesophile Medical, Human Pathogen, Biothreat Botulism Soil 35 - 40 USA 28 Public Gc00623 Gi01979 002606_GCAT 441770 19517 640753017 3863 3552 1 0 NC_009697 NCBI Los Alamos National Laboratory, Joint Genome Institute Unpublished July 20, 2007 Brettin T brettin@lanl.gov Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum F Langeland Genome FIRMICUTES Complete complete Pathogen, Obligate anaerobe, Sporulating, Motile, Chemoorganotroph, Rod-shaped, Mesophile Medical, Human Pathogen, Biothreat Botulism Host 37 Home-prepared liver paste involved in an outbreak of foodborne botulism on the island of Langeland in Denmark in 1958 USA 28 Public Gc00622 Gi01981 002608_GCAT 441772 19519 640753019 3885 3635 1 1 NC_009699 NCBI Joint Genome Institute, Los Alamos National Laboratory Unpublished July 20, 2007 Brettin T brettin@lanl.gov Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum A Hall Genome FIRMICUTES Complete complete Pathogen, Obligate anaerobe, Sporulating, Motile, Chemoorganotroph, Rod-shaped, Mesophile Medical, Human Pathogen, Biothreat Botulism Soil 35 - 40 Harvard University in 1947 USA 28 Public Gc00621 Gi01980 002607_GCAT 441771 19521 640753018 3760 3407 1 0 NC_009698 NCBI Joint Genome Institute, Los Alamos National Laboratory Unpublished July 20, 2007 Brettin T brettin@lanl.gov Bacteria Proteobacteria unclassified unclassified Sulfurovum Sulfurovum sp. NBC37-1 BACTERIAL Sulfurovum sp NBC37-1 ABI Genome PROTEOBACTERIA-EPSILON Complete complete Anaerobe, Nonmotile, Rod-shaped, Thermophile, Chemolithoautotroph Environmental None Deep sea, Marine, Hydrothermal vent Deep-sea hydrothermal vent in the Iheya North field in the Mid-Okinawa Japan 43 Public Gc00620 002992_GCAT 387093 18965 640753056 2562 2438 1 0 NC_009663 NCBI JAMSTEC MEXT PNAS 104, 12146-50 July 20, 2007 Nakagawa S nakagawas@jamstec.go.jp Bacteria Proteobacteria unclassified unclassified Nitratiruptor Nitratiruptor sp. SB155-2 BACTERIAL Nitratiruptor sp SB155-2 ABI Genome PROTEOBACTERIA-EPSILON Complete complete Anaerobe, Nonmotile, Rod-shaped, Thermophile, Chemolithoautotroph Environmental None Deep sea, Marine, Hydrothermal vent Deep-sea hydrothermal vent in the Iheya North field in the Mid-Okinawa Japan 39 Public Gc00619 002991_GCAT 387092 18963 640753037 1877 1843 1 0 NC_009662 NCBI JAMSTEC MEXT PNAS 104, 12146-50 July 20, 2007 Nakagawa S nakagawas@jamstec.go.jp Bacteria Proteobacteria Myxococcales Myxococcaceae Anaeromyxobacter Anaeromyxobacter sp. Fw109-5 BACTERIAL Anaeromyxobacter sp Fw109-5 ABI Genome PROTEOBACTERIA-DELTA Complete complete Anaerobe, Motile, Sporulating, Rod-shaped, Mesophile, Heterotroph Environmental, Bioremediation None Soil USA 74 Public Gc00618 Gi01322 001731_GCAT 404589 17729 640753003 5277 4466 1 0 NC_009675 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished July 17, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus cytotoxis NVH 391-98 ABI 10x Genome FIRMICUTES Complete complete Non-Pathogen, Aerobe, Facultative, Motile, Sporulating, Psychrotolerant, Rod-shaped Medical None Soil International Public Gc00617 Gi00792 000735_GCAT 315749 13624 640753006 4087 3833 1 1 NC_009674 NCBI, Joint Genome Institute Joint Genome Institute, INRA DOE Unpublished July 17, 2007 Sorokin A sorokine@jouy.inra.fr Bacteria Proteobacteria Rhizobiales Brucellaceae Ochrobactrum Ochrobactrum anthropi BACTERIAL Ochrobactrum anthropi ATCC 49188 ABI ATCC 49188 Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Rod-shaped, Motile, Aerobe, Mesophile Medical, Human Pathogen Meningitis Host, Soil, Sludge USA 56 Public Gc00616 Gi01920 002544_GCAT 439375 19485 640753038 4783 4424 2 4 NC_009667, NC_009668 NCBI Joint Genome Institute, LLNL DOE Unpublished July 10, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Kineosporiaceae Kineococcus Kineococcus radiotolerans BACTERIAL Kineococcus radiotolerans SRS30216 ABI ATCC BAA-149, DSM 14245 Genome ACTINOBACTERIA Complete complete Radiation resistant, Motile, Aerobe, Orange-colored, Nonsporulating, Coccus-shapedm Nesophile Environmental, Bioremediation None Aquatic 5-9 32 High-level radioactive waste cell at the Savannah River Site in Aiken of South Carolina in 2002 USA 74.2 Public Gc00615 Gi00303 001145_GCAT 266940 10689 640753031 4761 4480 1 2 NC_009664 NCBI, Joint Genome Institute Joint Genome Institute, Savannah River Site DOE Unpublished July 10, 2007 Fliermans C carl.fliermans@srs.gov Bacteria Proteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella baltica BACTERIAL Shewanella baltica OS185 ABI 10x Genome PROTEOBACTERIA-GAMMA Complete complete Anaerobe, Rod-shaped, Motile, Facultative, Psychrotolerant Biotechnological None Marine 4 Baltic Sea USA 51 Public Gc00614 Gi01655 001490_GCAT 402882 17643 640753049 5229 4323 1 1 NC_009665 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished July 10, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium sp. Marseille BACTERIAL Janthinobacterium (Minibacterium) sp Marseille ABI 9x CIP 107820, CCUG 50593 Genome PROTEOBACTERIA-BETA Complete complete Mesophile, Rod-shaped, Motile Medical, Environmental None Aquatic 30 Solution used in kidney dialysis France 54.2 Public Gc00613 Gi01533 001144_GCAT 375286 16549 640753030 4110 3697 1 0 NC_009659 NCBI CNRS PLoS Genet 3(8), e138 July 6, 2007 Audic, S Stephane.Audic@igs.cnrs-mrs.fr Bacteria Proteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas sp. MWYL1 BACTERIAL Marinomonas sp MWYL1 ABI Genome PROTEOBACTERIA-GAMMA Complete complete Aerobe, Motile, Rod-shaped, Mesophile Environmental None Marine USA 42.5 Public Gc00612 Gi01340 001755_GCAT 400668 17445 640753033 5100 4439 1 0 NC_009654 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished July 5, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa PA7 ABI Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Aerobe, Motile, Rod-shaped, Mesophile, Heterotroph Medical, Human Pathogen, Animal Pathogen, Plant Pathogen, Agricultural Opportunistic infection Host, Soil, Aquatic clinical isolate USA 66 Public Gc00611 Gi01274 001382_GCAT 381754 16720 640753042 6588 6286 1 0 NC_009656 NCBI, Pseudomonas Genome DBase J Craig Venter Institute NIH-NIAID Unpublished July 5, 2007 Bacteria Proteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus succinogenes BACTERIAL Actinobacillus succinogenes 130Z ABI 10x ATCC 55618 Genome PROTEOBACTERIA-GAMMA Complete complete Facultative, Rod-shaped, Capnophilic, Mesophile Biotechnological, Succinic-acid production None Bovine rumen, Host Bovine rumen USA 44 Public Gc00610 Gi00920 000646_GCAT 339671 13370 640753001 2319 2079 1 0 NC_009655 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished July 5, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Klebsiella Klebsiella pneumoniae BACTERIAL Klebsiella pneumoniae MGH78578 ABI ATCC 700721 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Facultative, Nonmotile, Rod-shaped, Lactose fermenting, Mesophile Medical, Animal Pathogen, Cattle Pathogen, Human Pathogen Pneumonia, Urinary tract infection, Bacteremia Host, Aquatic, Soil, Mouth microflora, Skin microflora, Intestinal microflora 37 Patient in 1994 USA 40 Public Gc00609 Gi00306 001147_GCAT 272620 31 640753032 5315 4776 1 5 CP000647 NCBI, Washington Univ Washington Univ NIH-NIAID Unpublished July 5, 2007 Clifton S sclifton@watson.wustl.edu Eukaryota Streptophyta Malpighiales Salicaceae Populus Populus trichocarpa EUKARYAL Populus balsamifera trichocarpa ABI 7.5x Genome PLANTS-STREPTOPHYTA Quality Draft complete Mesophile Agricultural USA 33.7 Public Gc00608 Gi00477 002292_GCAT 3694 10772 550000 45000 10 0 NC_008467-85 NCBI, Joint Genome Institute, Ume Univ Joint Genome Institute, Oak Ridge National Lab, Univ of Washington, Genome Canada, Swedish Univ of Agricultural Sciences DOE Science 313, 1596-604 September 15, 2006 Tuskan GA gtk@ornl.gov Eukaryota unclassified Peronosporales unclassified Phytophthora Phytophthora sojae EUKARYAL Phytophthora sojae P6497 ABI Genome PROTISTS-STRAMENOPILES Quality Draft complete Pathogen, Mesophile Agricultural, Plant Pathogen Root rot USA Public Gc00607 Gi00452 002165_GCAT 67593 17989 62000 AAQY00000000 NCBI, Joint Genome Institute Joint Genome Institute, Virginia Polytechnic Institute DOE, USDA, NSF Science 313, 1261-6 September 1, 2006 Tyler B http://www.vbi.vt.edu/staff/perspage_fcty/fcty_tyler_bret.htm Eukaryota unclassified Peronosporales unclassified Phytophthora Phytophthora ramorum EUKARYAL Phytophthora ramorum Pr102, UCD Pr4 ABI 7x Genome PROTISTS-STRAMENOPILES Quality Draft complete Pathogen, Mesophile Agricultural, Plant Pathogen Sudden Oak Death USA Public Gc00606 Gi00450 002164_GCAT 164328 12571 65000 15743 AAQX00000000 NCBI, Joint Genome Institute Joint Genome Institute, Virginia Polytechnic Institute DOE, USDA, NSF Science 313, 1261-6 September 1, 2006 Tyler B http://www.vbi.vt.edu/staff/perspage_fcty/fcty_tyler_bret.htm Eukaryota unclassified Peniculida Parameciidae Paramecium Paramecium tetraurelia EUKARYAL Paramecium tetraurelia d4-2 ABI Genome PROTISTS-ALVEOLATA Quality Draft complete Mesophile Model organism France Public Gc00605 Gi00432 001904_GCAT 5888 18363 200000 40000 CAAL01000000 NCBI, CNRS, Genoscope International Consortium, Genoscope Nature 444, 171-8 November 9, 2005 Sperling L sperling@cgm.cnrs-gif.fr Eukaryota Chordata Primates Hominidae Pan Pan troglodytes EUKARYAL Pan troglodytes Yerkes chimp pedigree #C0471 ABI 3.6x Genome CHORDATA-PRIMATES Quality Draft complete Mesophile captive-born descendant of chimpanzees from the West Africa International Public Gc00604 Gi00424 002502_GCAT 9598 12552 3100000 48910 24 NC_006468-92 NCBI, BCM-HGSC, Washington Univ BCM-HGSC, Washington Univ, Broad Institute NIH-NHGRI Nature 437, 69-87 September 1, 2005 Warren W http://genome.wustl.edu/Bio/email_data.cgi?staff=Wes%20Warren Eukaryota Streptophyta Poales Poaceae Oryza Oryza sativa EUKARYAL Oryza sativa ssp. japonica ABI 10x Genome PLANTS-STREPTOPHYTA Quality Draft complete Mesophile Agricultural None International 43 Public Gc00603 Gi00421 002272_GCAT 39947 13141 360785 37544 12 0 NC_008394-405 NCBI, RGP, CSHL, KOREA, CUGI, TIGR, CHINA, TAIWAN, Rutgers Univ IRGSP, TIGR, Genoscope, CUGI Nature 436, 793-800 August 11, 2005 Sasaki T tsasaki@nias.affrc.go.jp Eukaryota Chordata Didelphimorphia Didelphidae Monodelphis Monodelphis domestica EUKARYAL Monodelphis domestica pop1 ABI Genome CHORDATA-MAMMALS Quality Draft complete Mesophile USA Public Gc00602 Gi00375 002470_GCAT 13616 12561 18022 10 0 AAFR00000000 NCBI, NHGRI, NISC-NIH Broad Institute, Washington Univ NIH-NHGRI Nature 447, 167-77 May 10, 2007 Lindblad-Toh, K kersli@broad.mit.edu Eukaryota Ascomycota unclassified Magnaporthaceae Magnaporthe Magnaporthe grisea EUKARYAL Magnaporthe grisea 70-15 ABI 7x Genome FUNGI-ASCOMYCOTA Quality Draft incomplete Pathogen Agricultural, Plant Pathogen, FGI Rice blast USA 51.7 Public Gc00601 Gi00342 002041_GCAT 242507 13840 640281007 37800 11109 7 0 NZ_AACU00000000 NCBI, Broad Institute, North Carolina State Univ Broad Institute, North Carolina State Univ NSF, USDA Nature 434, 980-6 April 21, 2005 Dean RA ralph_dean@ncsu.edu Eukaryota Chordata Primates Cercopithecidae Macaca Macaca mulatta EUKARYAL Macaca mulatta ABI 6x Genome CHORDATA-PRIMATES Quality Draft complete Mesophile USA 40.7 Public Gc00600 Gi00340 002485_GCAT 9544 12537 2871189 34023 NC_007858-78 NCBI, BCM-HGSC, NHGRI, Washington Univ BCM-HGSC, TIGR, Washington Univ, J Craig Venter Institute NIH-NHGRI, NCRR Science 316, 222-34 April 13, 2007 Gibbs RA agibbs@bcm.edu Eukaryota Chordata Galliformes Phasianidae Gallus Gallus gallus EUKARYAL Gallus gallus BN/SsNHsdMCW ABI 6.6x Genome CHORDATA-BIRDS Quality Draft complete Mesophile International Public Gc00599 Gi00267 002426_GCAT 9031 13342 1000000 15419 40 0 NC_006088-119 NCBI, Roslin Institute, ChickBASE, Sanger Institute, Washington Univ, ChickNET Roslin Institute, Sanger Institute, Washington Univ NIH-NHGRI Nature 432, 695-716 December 9, 2004 Contact http://www.ri.bbsrc.ac.uk/chickmap/other_labs.html Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila pseudoobscura EUKARYAL Drosophila pseudoobscura MV2-25 ABI 9.1x Genome ARTHROPODA Quality Draft complete Mesophile USA 45.2 Public Gc00598 Gi00206 002351_GCAT 7237 10626 147433 9946 4 0 NZ_AADE00000000 NCBI, BCM-HGSC, NHGRI BCM-HGSC NIH-NHGRI Genome Res. 15, 1-18 January 8, 2005 Gibbs RA agibbs@bcm.tmc.edu Eukaryota Chordata Carnivora Canidae Canis Canis lupus EUKARYAL Canis lupus familiaris boxer ABI 7.6x Genome CHORDATA-MAMMALS Quality Draft complete Mesophile Model organism USA Public Gc00597 Gi00132 002440_GCAT 9615 13179 2400000 19300 39 0 NC_006583-621, AAEX00000000 NCBI, Berkeley Univ, FHCRC, Broad Institute, NHGRI Broad Institute, Agencourt Bioscience, Univ of California, Berkeley, Univ of Oregon, Fred Hutchinson Cancer Research Center NIH-NHGRI Nature 438, 803-19 December 8, 2005 Rine J Jasper_Rine@ls.berkeley.edu Eukaryota Arthropoda Lepidoptera Bombycidae Bombyx Bombyx mori EUKARYAL Bombyx mori Dazao ABI 5.9x Genome ARTHROPODA Quality Draft complete Mesophile Biotechnological, Protein production None China Public Gc00596 Gi01144 002340_GCAT 7091 13125 530000 18510 28 0 AADK00000000 NCBI SWAU, China Science 306, 1937-40 December 10, 2004 Xia Q xiaqy@swau.cq.cn Eukaryota Arthropoda Diptera Culicidae Aedes Aedes aegypti EUKARYAL Aedes aegypti Liverpool ABI 8x Genome ARTHROPODA Quality Draft complete Pathogen, Mesophile Medical, Human Pathogen, Animal Pathogen Yellow fever USA Public Gc00595 Gi00015 002329_GCAT 7159 12434 1380000 3 0 AAGE00000000 NCBI, AaeDB, TIGR, Broad Institute Colorado State Univ, TIGR, Broad Institute NIH-NIAID Science 316, 1718-23 June 22, 2007 Severson DW http://www.science.nd.edu/biology/faculty/severson.html Eukaryota Arthropoda Hymenoptera Apidae Apis Apis mellifera EUKARYAL Apis mellifera DH4 ABI 7-8x Genome ARTHROPODA Quality Draft complete Mesophile Agricultural, Medical None USA Public Gc00594 Gi00031 002334_GCAT 7460 10625 200000 6704 16 0 NC_007070-85 NCBI, BCM-HGSC, NHGRI BCM-HGSC NIH-NHGRI, USDA Nature 443, 931-949 November 1, 2006 HGSC hgsc-help@bcm.tmc.edu Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus Newman ABI Genome FIRMICUTES Complete Complete Coccus-shaped, Nonsporulating, Nonmotile, Mesophile Medical, Human Pathogen, Animal Pathogen Skin infection, Pneumonia, Endocarditis Host Japan 32 Public Gc00593 002835_GCAT 426430 18801 640753054 2878 2614 1 0 NC_009641 NCBI Juntendo Univ J Bacteriology Epub July 3, 2007 Baba, T tbaba@med.juntendo.ac.jp Eukaryota Chlorophyta Mamiellales Mamiellaceae Ostreococcus Ostreococcus 'lucimarinus' EUKARYAL Ostreococcus lucimarinus CCE9901 - RCC141 ABI CCMP2514 Genome PLANTS-CHLOROPHYTA Quality Draft complete Low light adapted, Mesophile Marine, Deep sea 32.9000 N 117.2550 W USA Public Gc00592 Gi01106 002275_GCAT 436017 13044 640281011 13200 7651 21 0 NC_009355-73 NCBI, Joint Genome Institute, Integr8 Joint Genome Institute, UCSD DOE PNAS 104, 7705-7710 May 3, 2007 Palenik B bpalenik@ucsd.edu Archaea Euryarchaeota Methanococcales Methanococcaceae Methanococcus Methanococcus maripaludis ARCHAEAL Methanococcus maripaludis C7 ABI 10.7x Genome EURYARCHAEOTA-METHANOCOCCI Complete complete Methanogen, Motile, Obligate anaerobe, Nonsporulating, Hydrogenotrophic, Nitrogen fixation, Coccus-shaped, Mesophile, Lithotroph Biotechnological, Energy production None Marine, Sediment 6.5-8 Intertidal sediments USA 33.7 Public Gc00591 Gi01308 001821_GCAT 426368 18819 640753035 1772 1788 1 0 NC_009637 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished June 29, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Rhizobiaceae Sinorhizobium Sinorhizobium medicae BACTERIAL Sinorhizobium medicae WSM419 ABI 12x Genome PROTEOBACTERIA-ALPHA Complete complete Nitrogen fixation, Aerobe, Nonsporulating, Rod-shaped, Mesophile Biotechnological None Soil 28 USA 62 Public Gc00590 Gi01041 001593_GCAT 366394 16304 640753051 3781 3529 1 3 NC_009636 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished June 29, 2007 Richardson P microbes@cuba.jgi-psf.org Archaea Euryarchaeota Methanococcales Methanococcaceae Methanococcus Methanococcus aeolicus ARCHAEAL Methanococcus aeolicus Nankai-3 ABI, 454 12.7x Genome EURYARCHAEOTA-METHANOCOCCI Complete complete Methanogen, Carbon cycle, Anaerobe, Motile, Nonsporulating, Coccus-shaped, Mesophile, Lithotroph Energy production, Biotechnological None Marine 42 Deep marine sediment from the Nankai Trough off the coast of Japan USA 30 Public Gc00589 Gi01899 001824_GCAT 419665 18641 640753034 1569 1490 1 0 NC_009635 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished June 29, 2007 Richardson P microbes@cuba.jgi-psf.org Archaea Euryarchaeota Methanococcales Methanococcaceae Methanococcus Methanococcus vannielii ARCHAEAL Methanococcus vannielii SB ABI Genome EURYARCHAEOTA-METHANOCOCCI Complete complete Methanogen, Carbon cycle, Anaerobe, Motile, Nonsporulating, Coccus-shaped, Mesophile, Lithotroph Energy production, Biotechnological None Marine, Mud 30 San Francisco Bay mud flat USA 31 Public Gc00588 Gi01309 001822_GCAT 406327 17889 640753036 1720 1678 1 0 NC_009634 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished June 29, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Clostridiaceae Alkaliphilus Alkaliphilus metalliredigens BACTERIAL Alkaliphilus metalliredigenes QYMF ABI Genome FIRMICUTES Complete complete Alkalophile, Halophile, Metal reducer, Mesophile Environmental, Bioremediation None Ponds Borax leachate ponds USA 36.6 Public Gc00587 Gi00023 000694_GCAT 293826 13006 640753002 4400 4090 1 0 NC_009633 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished June 28, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus JH1 VISA ABI 11x Genome FIRMICUTES Complete complete Pathogen, Facultative, Coccus-shaped, Nonsporulating, Nonmotile, Mesophile Medical, Human Pathogen, Animal Pathogen, Cattle Pathogen, Poultry Pathogen Toxic-shock syndrome, Staphylococcal scarlet fever Host USA 32.9 Public Gc00586 Gi00765 001516_GCAT 359787 15758 640753052 2906 2747 1 1 NC_009632 NCBI, Joint Genome Institute Joint Genome Institute, Rockefeller Univ DOE PNAS 104, 9451-6 June 28, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium beijerinckii BACTERIAL Clostridium beijerinckii NCIMB 8052 ABI NCIMB 8052 Genome FIRMICUTES Complete complete Anaerobe, Rod-shaped, Motile, Sporulating, Mesophile Biotechnological, Energy production, Solvent production None Soil, Aquatic USA 29.9 Public Gc00585 Gi00156 000966_GCAT 290402 12637 640753016 6000 5020 1 0 NC_009617 NCBI, Joint Genome Institute Joint Genome Institute, Univ of Illinois DOE Unpublished June 27, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides vulgatus BACTERIAL Bacteroides vulgatus ATCC 8482 ABI ATCC 8482 Genome BACTEROIDETES Complete complete Pathogen, Anaerobe, Rod-shaped, Mesophile Medical, Human Pathogen, Animal Pathogen, HGMI Opportunistic peritoneal disease Intestinal microflora, Host USA 42.2 Public Gc00584 Gi00072 000771_GCAT 435590 13378 640753008 5163 4065 1 0 NC_009614 NCBI, Washington Univ Washington Univ NSF PLoS Biology 5, E156 June 27, 2007 Gordon JI jgordon@molecool.wustl.edu Bacteria Bacteroidetes Bacteroidales Porphyromonadaceae Parabacteroides Parabacteroides distasonis BACTERIAL Parabacteroides distasonis ATCC 8503 ABI, 454 ATCC 8503 Genome BACTEROIDETES Complete complete Anaerobe, Pathogen, Rod-shaped, Nonmotile Medical, Human Pathogen, Animal Pathogen, HGMI Opportunistic peritoneal disease Intestinal microflora, Host USA 45.1 Public Gc00583 Gi00067 000765_GCAT 435591 13485 640753039 4811 3850 1 0 NC_009615 NCBI, Washington Univ Washington Univ NSF PLoS Biology 5, E156 June 27, 2007 Gordon JI jgordon@molecool.wustl.edu Bacteria Thermotogae Thermotogales Thermotogaceae Thermosipho Thermosipho melanesiensis BACTERIAL Thermosipho melanesiensis BI429 ABI, 454 10x Genome THERMOTOGAE Complete complete Rod-shaped, Thermophile, Anaerobe, Mesophile Evolutionary, Biotechnological None Marine, Hydrothermal vent 6.5 70 Gills of the deep-sea vent hydrothermal mussel Bathymodiolus brevior from the Lau Basin at Southwestern Pacific Ocean, between 1832 and 1887 metres (latitude, 22o329S; longitude, 176o439W) USA 30 Public Gc00582 Gi01045 001610_GCAT 391009 17249 640753057 1915 1879 1 0 NC_009616 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished June 26, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Bacteroidetes Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium psychrophilum BACTERIAL Flavobacterium psychrophilum JIP02/86 ABI ATCC 49511 Genome BACTEROIDETES Complete complete Psychrophile, Pathogen, Aerobe, Motile, Rod-shaped, Mesophile Medical, Fish Pathogen Bacterial cold water, Rainbow trout fry syndrome Aquatic, Host France 32.5 Public Gc00581 002803_GCAT 402612 19979 640753027 2861 2412 1 0 NC_009613 NCBI INRA Nature Biotechnol 25, 763-9 June 25, 2007 Bacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi PittGG ABI Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Facultative, Nonmotile, Rod-shaped Medical, Human Pathogen Meningitis, Septicemia, Otitis media, Sinusitis, Chronic bronchitis Host External ear discharge of a spontaneously perforated tympanic membrane of a child in Pittsburgh USA 37.9 Public Gc00580 Gi01494 001117_GCAT 374931 16401 640427117 1887 1670 1 0 NC_009567 NCBI Center for Genomic Sciences Unpublished June 7, 2007 Bacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi PittEE ABI Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Facultative, Nonmotile, Rod-shaped, Mesophile Medical, Human Pathogen Meningitis, Septicemia, Otitis media, Sinusitis, Chronic bronchitis Host Middle-ear effusion of a child in Pittsburgh USA 37.9 Public Gc00579 Gi01493 001116_GCAT 374930 16400 640427116 1813 1623 1 0 NC_009566 NCBI Center for Genomic Sciences Unpublished June 7, 2007 Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis F11 (ExPEC) ABI 22.27x Genome ACTINOBACTERIA Complete complete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile, Nonsporulating, Mesophile Medical, Human Pathogen Tuberculosis Host 37 Tuberculosis patients during a TB epidemic in the Western Cape of South Africa USA 65.6 Public Gc00578 Gi01175 001227_GCAT 336982 15642 640427123 4424 3950 1 0 NC_009565, CM000286 NCBI, Integr8, Broad Institute Broad Institute NIH-NIAID Unpublished June 7, 2007 MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis H37Ra 103703 ATCC 25177 Genome ACTINOBACTERIA Complete complete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile, Mesophile Medical, Human Pathogen Tuberculosis Host 37 Original human-lung H37 isolate in 1934 China 65.6 Public Gc00577 Gi01895 001235_GCAT 419947 18883 640427124 4419 4034 1 0 NC_009525 NCBI Beijing Genomics Institute Unpublished June 1, 2007 Zhang Y yzhang@jhsph.edu Bacteria Proteobacteria Pseudomonadales Moraxellaceae Psychrobacter Psychrobacter sp. PRwf-1 BACTERIAL Psychrobacter sp. PRwf-1 ABI 15x Genome PROTEOBACTERIA-GAMMA Complete complete Psycrotolerant, Radiation resistant, Rod-shaped, Nonmotile, Mesophile Biotechnological, Astrobiological None Marine, Soil, Permafrost sediment USA 44 Public Gc00576 Gi01521 001394_GCAT 349106 15759 640427134 2978 2370 1 2 NC_009524 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished June 4, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Chloroflexi Chloroflexales Chloroflexaceae Roseiflexus Roseiflexus sp. RS-1 BACTERIAL Roseiflexus sp RS-1 ABI 11x Genome CHLOROFLEXI Complete complete Filament-shaped, Photosynthetic, Thermophile, Facultative, Nonsporulating, Motile, Rod-shaped, Photoautotroph Biotechnological None Marine, Hot spring Hot spring microbial mat USA 60.4 Public Gc00575 Gi00963 001430_GCAT 357808 16190 640427139 5801 4517 1 0 NC_009523 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished June 4, 2007 Richardson P microbes@cuba.jgi-psf.org Archaea Euryarchaeota Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii ARCHAEAL Methanobrevibacter smithii PS ABI 11.6x 157022 ATCC 35061, DSM 861 Genome EURYARCHAEOTA-METHANOBACTERIA Complete complete Methanogen, Symbiont, Anaerobe, Rod-shaped, Nonmotile, Mesophile, Lithotroph Medical, HGMI None Host, Soil, Human intestinal microflora Sewage digester in Gainesville Florida USA 31 Public Gc00574 Gi01898 001792_GCAT 420247 18653 640427121 1853 1793 1 0 NC_009515 NCBI Washington Univ PNAS 104, 10643-8 June 4, 2007 Gordon JI jgordon@molecool.wustl.edu Bacteria Firmicutes Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus reuteri BACTERIAL Lactobacillus reuteri F275 (JCM 1112) ABI 10.5x 38415 DSM 20016T Genome FIRMICUTES Complete complete Probiotic, Non-Pathogen, Rod-shaped, Facultative, Nonmotile, Mesophile Food industry, Biotechnological None Host, Human intestinal microflora, Mammalian intestinal microflora, Birds intestinal microflora Human isolate that is unable to colonize the intestinal tract of mice USA 38.9 Public Gc00573 Gi00790 001153_GCAT 299033 15766 640427118 2000 1900 1 0 NC_009513 NCBI Joint Genome Institute, Univ of Otago DOE Unpublished May 31, 2007 Tannock G gerald.tannock@stonebow.otago.ac.nz Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida BACTERIAL Pseudomonas putida F1 ABI 11x 268202 ATCC 700007 Genome PROTEOBACTERIA-GAMMA Complete complete Aerobe, Motile, Rod-shaped, Non-Pathogen, Mesophile, Heterotroph Bioremediation, Environmental None Soil Polluted creek in Urbana IL USA 61.9 Public Gc00572 Gi00953 001392_GCAT 351746 13909 640427132 5959 5252 1 0 NC_009512 NCBI, Pseudomonas Genome DBase Joint Genome Institute DOE Unpublished May 31, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas wittichii BACTERIAL Sphingomonas wittichii RW1 ABI 11x 144023 DSM 6014, JCM 10273, EY 4224 Genome PROTEOBACTERIA-ALPHA Complete complete Aerobe, Rod-shaped, Motile, Mesophile Bioremediation, Dioxin-mineralizing, Environmental None Aquatic Elbe River in Germany USA 67 Public Gc00571 Gi01358 001775_GCAT 392499 17343 640427144 5382 4850 1 2 NC_009511 NCBI, Joint Genome Institute, Johns Hopkins Univ Joint Genome Institute DOE Unpublished May 31, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Brucellaceae Brucella Brucella ovis BACTERIAL Brucella melitensis bv ovis ATCC25840 104622 ATCC 25840 Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Nonmotile, Rod-shaped, Nonsporulating, Intracellular pathogen, Facultative, Mesophile Medical, Biothreat, Animal Pathogen, Sheep Pathogen Brucellosis, Genital infection Host, Macrophage 37 USA 57.2 Public Gc00570 Gi00101 000792_GCAT 444178 12514 640427105 3275 2892 2 0 NC_009504, NC_009505 NCBI TIGR Unpublished May 31, 2007 Paulsen I http://www.bio.jhu.edu/Directory/Faculty/Paulsen/Default.html Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma agalactiae BACTERIAL Mycoplasma agalactiae PG2 369021 Genome FIRMICUTES Complete complete Pathogen, Sphere-shaped, Nonmotile, Facultative, Nonsporulating, Mesophile Medical, Animal Pathogen Mycoplasmosis, Pneumonia, Mastitis, Arthritis Host France 29.7 Public Gc00569 Gi01077 001237_GCAT 347257 16095 640427125 877 742 1 0 NC_009497 NCBI, Genoscope Genoscope Unpublished May 23, 2007 Barbe V vbarbe@genoscope.cns.fr Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum type A - Hall 719454 ATCC 3502 Genome FIRMICUTES Complete complete Pathogen, Obligate anaerobe, Sporulating, Motile, Chemoorganotroph, Rod-shaped, Type A toxin producer, Mesophile Medical, Human Pathogen, Biothreat Botulism Soil 37 United Kingdom 28 Public Gc00568 Gi00157 000968_GCAT 413999 193 640427109 3886 3574 1 1 NC_009495 NCBI, Sanger Institute, ClostriDB Sanger Institute, Univ of Reading, Institute of Food Research Beowulf Genomics Genome Res 17, 1082-92 May 23, 2007 Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila BACTERIAL Legionella pneumophila Corby Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Rod-shaped, Motile, Aerobe, Nonsporulating, Mesophile Medical, Human Pathogen Legionnaire's disease Host Human isolate Germany 38.5 Public Gc00567 Gi00827 001161_GCAT 400673 17491 640427119 3576 3206 1 0 NC_009494 NCBI IMB, Jena Unpublished May 24, 2007 Gloeckner G gernot@imb-jena.de Bacteria Cyanobacteria Chroococcales unclassified Synechococcus Synechococcus sp. WH 7803 BACTERIAL Synechococcus sp. WH 7803 527166 Genome CYANOBACTERIA Complete complete Photosynthetic, Ocean carbon cycle, Motile, Mesophile, Photoautotroph Biotechnological, Environmental None Marine Sargasso Sea European Consortium 60.2 Public Gc00566 Gi00250 001586_GCAT 32051 13642 640427149 2366 2533 1 0 NC_009481 NCBI, Genoscope Genoscope, International Collaboration European Union Unpublished May 19, 2007 Wincker P pwincker@genoscope.cns.fr Bacteria Cyanobacteria Chroococcales unclassified Synechococcus Synechococcus sp. RCC307 BACTERIAL Synechococcus sp. RCC307 Genome CYANOBACTERIA Complete complete Photosynthetic, Ocean carbon cycle, Motile, Coccus-shaped, Mesophile, Photoautotroph Environmental, Biotechnological None Marine Seawater taken at a depth of 15 meters from the Mediterranean Sea European Consortium 60.2 Public Gc00565 Gi00783 001585_GCAT 316278 13654 640427148 2224 2535 1 0 NC_009482 NCBI, Genoscope Genoscope, International Collaboration European Union Unpublished May 19, 2007 Wincker P pwincker@genoscope.cns.fr Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus JH9 VISA ABI 11x Genome FIRMICUTES Complete complete Pathogen, Facultative, Coccus-shaped, Nonsporulating, Nonmotile, Mesophile Medical, Human Pathogen, Animal Pathogen, Cattle Pathogen, Poultry Pathogen Toxic-shock syndrome, Staphylococcal scarlet fever Host Patient undergoing vancomycin treatment USA 32.9 Public Gc00564 Gi01035 001517_GCAT 359786 15757 640427145 2906 2697 1 1 NC_009487 NCBI, Joint Genome Institute Joint Genome Institute, Rockefeller Univ DOE PNAS 104, 9451-9456 May 18, 2007 Tomasz A tomasz@rockefeller.edu Bacteria Actinobacteria Actinomycetales Microbacteriaceae Clavibacter Clavibacter michiganensis BACTERIAL Clavibacter (Corynebacterium) michiganensis michiganensis NCPPB 382 7256 NCPPB382 Genome ACTINOBACTERIA Complete complete Pathogen, Rod-shaped, Nonmotile, Aerobe, Mesophile Agricultural, Plant Pathogen Tuber rot, Ring rot, Wilting disease Host Germany 72.7 Public Gc00563 Gi00154 000964_GCAT 443906 19643 640427108 3297 2984 1 2 NC_009480 NCBI, Bielefeld Univ Bielefeld Univ BMBF Unpublished May 18, 2007 Puhler A puehler@genetik.uni-bielefeld.de Bacteria Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga petrophila BACTERIAL Thermotoga petrophila RKU-1 ABI 11x 163898 Genome THERMOTOGAE Complete complete Rod-shaped, Hyperthermophile, Anaerobe, Heterotroph, Motile Evolutionary, Biotechnological None Aquatic, Oil fields 80 Production waters of the Kubiki oil reservoir in Niigata Japan USA 46 Public Gc00562 Gi01043 001608_GCAT 390874 17089 640427150 1823 1785 1 0 NC_009486 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished May 18, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Bradyrhizobiaceae Bradyrhizobium Bradyrhizobium sp. BTAi1 BACTERIAL Bradyrhizobium sp BTAi1 ABI 10x Aeschynomene indica Genome PROTEOBACTERIA-ALPHA Complete complete Nitrogen fixation, Aerobe, Motile, Stores polyhydroxybutyrate, Rod-shaped, Photosynthetic, Carbon sequestration, Mesophile Agricultural None Soil Stem nodules of Aeschynomene indica USA 64 Public Gc00561 Gi00922 000788_GCAT 288000 16137 640427103 8264 7394 1 1 NC_009485 NCBI, Joint Genome Institute Joint Genome Institute DOE Science 316, 1307-12 May 11, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Desulfuromonadales Geobacteraceae Geobacter Geobacter uraniumreducens BACTERIAL Geobacter uraniumreducens RF4 ABI 13x Genome PROTEOBACTERIA-DELTA Complete complete Rod-shaped, Motile, Anaerobe, Iron reducer, Uranium reducer, Mesophile, Chemolithotroph, Nonsporulating Bioremediation, Environmental None Soil, Sediment Uranium bioremediation study site in Rifle Colorado USA 54 Public Gc00560 Gi01251 001106_GCAT 351605 15768 640427115 5136 4357 1 0 NC_009483 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished May 11, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhodospirillales Acetobacteraceae Acidiphilium Acidiphilium cryptum BACTERIAL Acidiphilium cryptum JF-5 ABI 9x Genome PROTEOBACTERIA-ALPHA Complete complete Heterotroph, Acidophile, Iron reducer, Rod-shaped, Motile, Aerobe, Mesophile Environmental, Bioremediation, Biotechnological None Aquatic, Acid mine drainage, Hydrothermal vent 35 Coal mine lake sediment USA 67 Public Gc00559 Gi00918 000611_GCAT 349163 15753 640427101 3389 3063 1 8 NC_009484 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished May 11, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Chloroflexi unclassified unclassified Dehalococcoides Dehalococcoides sp. BAV1 BACTERIAL Dehalococcoides sp BAV1 ABI 13x Genome CHLOROFLEXI Complete complete Anaerobe, Dechlorinates Tetrachloroethene, Motile, Mesophile, Chemolithotroph Environmental, Ecological, Bioremediation, Biotechnological None Groundwater, Aquatic environment in Michigan that could dechlorinate polychlorinated ethenes USA 47 Public Gc00558 Gi00937 000991_GCAT 216389 15770 640427111 1341 1371 1 0 NC_009455 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished May 7, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae O395 O1 Genome PROTEOBACTERIA-GAMMA Complete complete Curved-shaped, Motile, Facultative, Mesophile Medical, Human Pathogen Cholera, Food poisoning Aquatic 6th pandemic strain USA 47 Public Gc00557 Gi01151 001685_GCAT 345073 15667 640427151 4148 3875 2 0 NC_009456, NC_009457 NCBI, TIGR TIGR Unpublished May 8, 2007 Bacteria Firmicutes Clostridiales Peptococcaceae Pelotomaculum Pelotomaculum thermopropionicum BACTERIAL Pelotomaculum thermopropionicum SI 303408 DSM 13744 Genome FIRMICUTES Complete complete Anaerobe, Syntrophic, Propionate-oxidizing, Thermophile, Sporulating Biotechnological None Sludge 7 55 Thermophilic upflow anaerobic sludge blanket reactor Japan 52.8 Public Gc00556 Gi01927 002551_GCAT 370438 19023 640427128 3025 2920 1 0 NC_009454 NCBI Marine Biotechnology Institute Unpublished May 8, 2007 Watanabe K kazuya.watanabe@mbio.jp Bacteria Proteobacteria unclassified unclassified unclassified Calyptogena okutanii thioautotrophic gill symbiont BACTERIAL Vesicomyosocius okutanii HA Calyptogena okutanii Genome PROTEOBACTERIA-GAMMA Complete complete Chemoautotroph, Sulfur oxidizer, Symbiont, Mesophile Evolutionary None Host Hatsushima island in Sagami Bay in Japan Japan 31.6 Public Gc00555 002614_GCAT 412965 18267 640427107 1022 937 1 0 NC_009465 NCBI JAMSTEC Current Biology 17, 881-886 May 22, 2007 Maruyama T tadashim@jamstec.go.jp Bacteria Proteobacteria Rickettsiales Rickettsiaceae Orientia Orientia tsutsugamushi BACTERIAL Orientia (Rickettsia) tsutsugamushi Boryong Genome PROTEOBACTERIA-ALPHA Complete complete Rod-shaped, Aerobe, Pathogen, Intracellular, Motile, Mesophile Medical, Animal Pathogen Scrub typhus Host Korean patient in Boryong in 1995 Korea 30.5 Public Gc00554 002613_GCAT 357244 16180 640427127 2127 1182 1 0 NC_009488 NCBI Seoul National Univ MOHW PNAS 104, 7981-6 May 8, 2007 Kim I-S molecule@plaza.snu.ac.kr Bacteria Proteobacteria Cardiobacteriales Cardiobacteriaceae Dichelobacter Dichelobacter nodosus BACTERIAL Dichelobacter nodosus VCS1703A Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Anaerobe, Rod-shaped, Mesophile Medical, Animal Pathogen Ovine footrot Host 37 USA 44.4 Public Gc00553 Gi00198 001003_GCAT 246195 50 640427112 1389 1280 1 0 NC_009446 NCBI Univ or Arizona, TIGR USDA Nat. Biotechnol 25, 569-75 May 4, 2007 Paulsen I http://www.bio.jhu.edu/Directory/Faculty/Paulsen/Default.html Bacteria Proteobacteria Rhizobiales Bradyrhizobiaceae Bradyrhizobium Bradyrhizobium sp. ORS278 BACTERIAL Bradyrhizobium sp ORS278 299985 Aeschynomene Genome PROTEOBACTERIA-ALPHA Complete complete Nitrogen fixation, Aerobe, Motile, Stores polyhydroxybutyrate, Rod-shaped, Photosynthetic, Mesophile Agricultural None Soil, Host Stem nodule of Aeschynomene sensitiva in Senegal in 1991 France 65.5 Public Gc00552 Gi00923 000789_GCAT 114615 19575 640427104 7456 6717 1 0 NC_009445 NCBI, Genoscope Genoscope Science 316, 1307-12 May 1, 2007 Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Rhodobacter Rhodobacter sphaeroides BACTERIAL Rhodobacter sphaeroides ATCC 17025 ABI 10x 99107 ATCC 17025 Genome PROTEOBACTERIA-ALPHA Complete complete Photosynthetic, Rod-shaped, Motile, Facultative, Mesophile Bioremediation, Energy production, Biotechnological, Environmental None USA 68.5 Public Gc00551 Gi01029 001412_GCAT 349102 15755 640427138 3217 3111 1 5 NC_009428 NCBI Joint Genome Institute DOE Unpublished May 8, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Bacteroidetes Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium johnsoniae BACTERIAL Flavobacterium johnsoniae UW101 ABI 11x 8766 ATCC 17061 Genome BACTEROIDETES Complete complete Aerobe, Cellulolytic, Motile, Pathogen, Rod-shaped, Nonsporulating, Mesophile Biotechnological, Medical, Fish Pathogen, Biomass conversion Skin lesions Aquatic, Soil 20 - 30 Soil in England USA 34 Public Gc00550 Gi00942 001056_GCAT 376686 16082 640427114 6096 4985 1 0 NC_009441 NCBI Joint Genome Institute DOE Unpublished May 1, 2007 Richardson P microbes@cuba.jgi-psf.org Eukaryota unclassified Kinetoplastida Trypanosomatidae Leishmania Leishmania infantum EUKARYAL Leishmania infantum JPCM5 (MCAN/ES/98/LLM-877) ABI 5x Genome PROTISTS-EUGLENOZOA Complete complete Parasite, Pathogen, Mesophile Medical, Human Pathogen Leishmaniasis Host United Kingdom Public Gc00549 Gi00324 001881_GCAT 435258 12658 31760 7993 36 0 NC_009386-420 NCBI, Sanger Institute Sanger Institute, Glasgow Univ, Imperial College Wellcome Trust Unpublished April 30, 2007 Peacock C csp@sanger.ac.uk Archaea Crenarchaeota Sulfolobales Sulfolobaceae Metallosphaera Metallosphaera sedula ARCHAEAL Metallosphaera sedula DSM 5348 115548 DSM 5348 Genome CRENARCHAEOTA-THERMOPROTEI Complete complete Aerobe, Metal-mobilizing, Thermoacidophile, Iron oxidizer, Nonmotile, Nonsporulating, Coccus-shaped, Thermophile Biotechnological, Bioremediation None 70 Thermal pond in the Pisciarelli Solfatara in Italy USA 46.3 Public Gc00548 Gi01305 001818_GCAT 399549 17447 640427120 2191 2256 1 0 NC_009440 NCBI, Integr8 Joint Genome Institute DOE Unpublished April 25, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus suis BACTERIAL Streptococcus suis 98HAH33 Genome FIRMICUTES Complete complete Pathogen, Nonmotile, Nonsporulating, Facultative, Mesophile Medical, Human Pathogen, Swine Pathogen, Animal Pathogen Meningitis, Endocarditis, Septicemia, Arthritis Host 37 Chinese virulent strain isolated from fata cases of STSS in 1998 China 41.1 Public Gc00547 Gi01544 001568_GCAT 391296 17155 640427147 2095 2189 1 0 NC_009443 NCBI Beijing Institute of Genomics PLoS ONE 2, E315 April 24, 2007 Yu J tjq85@hotmail.com Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus suis BACTERIAL Streptococcus suis 05ZYH33 Genome FIRMICUTES Complete complete Pathogen, Nonmotile, Nonsporulating, Facultative, Mesophile Medical, Human Pathogen, Swine Pathogen, Animal Pathogen Meningitis, Endocarditis, Septicemia, Arthritis Host 37 Chinese virulent strain isolated from fata cases of STSS in 2005 China 41.1 Public Gc00546 Gi01543 001567_GCAT 391295 17153 640427146 2096 2186 1 0 NC_009442 NCBI Beijing Institute of Genomics PLoS ONE 2, E315 April 24, 2007 Yu J tjq85@hotmail.com Bacteria Proteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella putrefaciens BACTERIAL Shewanella putrefaciens CN-32 ABI, 454 493665 Genome PROTEOBACTERIA-GAMMA Complete complete Iron reducer, Anaerobe, Pathogen, Motile, Rod-shaped, Mesophile Biotechnological None Aquatic, Soil USA 44.4 Public Gc00545 Gi00555 001496_GCAT 319224 13393 640427141 3498 3972 1 0 NC_009438 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished April 20, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas mendocina BACTERIAL Pseudomonas mendocina ymp ABI 14.4x Genome PROTEOBACTERIA-GAMMA Complete complete Aerobe, Motile, Rod-shaped, Pathogen, PCP-degrading, Mesophile, Heterotroph Medical, Human Pathogen, Biotechnological, Bioremediation, Alginate synthesis, Environmental Endocarditis, Spondylodiscitis Soil, Aquatic, Host, Blood Argentina USA 64.7 Public Gc00544 Gi01348 001765_GCAT 399739 17457 640427131 5072 4594 1 0 NC_009439 NCBI Joint Genome Institute DOE Unpublished April 20, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Syntrophomonadaceae Caldicellulosiruptor Caldicellulosiruptor saccharolyticus BACTERIAL Caldicellulosiruptor saccharolyticus DSM 8903 ABI 10x 99107 DSM 8903 Genome FIRMICUTES Complete complete Anaerobe, Thermophile, Cellulolytic, Nitrogen producer, Biomass degrader, Rod-shaped Biotechnological, Energy production, Bioenergy None Hot spring 79 Hot spring in New Zealand USA 35 Public Gc00543 Gi00929 000818_GCAT 351627 13466 640427106 2970 2679 1 0 NC_009437 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished April 19, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Enterobacter Enterobacter sp. 638 BACTERIAL Enterobacter sp 638 Populus trichocarpa x deltoides Genome PROTEOBACTERIA-GAMMA Complete complete Facultative, Rod-shaped, Motile, Endophyte, Mesophile Agricultural None Host Populus trichocarpa x deltoides USA 52.8 Public Gc00542 Gi01336 001748_GCAT 399742 17461 640427113 4518 4115 1 1 NC_009436 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished April 18, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas stutzeri BACTERIAL Pseudomonas stutzeri A1501 CGMCC 0351 Genome PROTEOBACTERIA-GAMMA Complete complete Aerobe, Motile, Rod-shaped, Non-Pathogen, Denitrifying, Mesophile, Heterotroph Bioremediation, Environmental, Agricultural None Host, Rice roots, Soil Rice roots that had been inoculated with strain A15 in a rice paddy in China China 63.9 Public Gc00541 Gi01534 001393_GCAT 379731 16817 640427133 4567 4128 1 0 NC_009434 NCBI, Pseudomonas Genome DBase Chinese Academy of Agricultural Sciences Unpublished April 23, 2007 Archaea Crenarchaeota Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum arsenaticum ARCHAEAL Pyrobaculum arsenaticum PZ6 ABI 11x 163713 DSM 13514, ATCC 700994 Genome CRENARCHAEOTA-THERMOPROTEI Complete complete Hyperthermophile, Autotroph, Anaerobe, Organotroph, Chemolithotroph, Rod-shaped, Motile, Nonsporulating Biotechnological None Aquatic, Hot spring 95 Hot spring at Pisciarelli Solfatara Naples Italy USA 58.3 Public Gc00540 Gi01056 001812_GCAT 340102 15582 640427135 2121 2298 1 0 NC_009376 NCBI, Joint Genome Institute, Integr8 Joint Genome Institute DOE Unpublished April 20, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Micromonosporaceae Salinispora Salinispora tropica BACTERIAL Salinispora tropica CNB-440 ABI 13x 621777 DSM 44818 Genome ACTINOBACTERIA Complete complete Sporulating, Nonmotile, Aerobe, Salinosporamide producer, Mesophile Biotechnological, Medical, Cancer treatment None Marine 28 Coarse beach sand off the Bahamas USA 69 Public Gc00539 Gi01034 001442_GCAT 369723 16342 640427140 5183 4536 1 0 NC_009380 NCBI, Joint Genome Institute Joint Genome Institute DOE PNAS 104, 10376-81 April 17, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Pestoides F Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Aerobe, Motile, Rod-shaped, Mesophile Medical, Human Pathogen, Animal Pathogen, Biothreat Bubonic and Pneumonic plague Host USA 47.6 Public Gc00538 Gi01525 001726_GCAT 386656 16700 640427152 4517 3850 1 2 NC_009381 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished April 13, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Polynucleobacter sp. QLW-P1DMWA-1 BACTERIAL Polynucleobacter sp QLW-P1DMWA-1 ABI 12x Genome PROTEOBACTERIA-BETA Complete complete Free-living, Heterotroph, Nonmotile Biotechnological, Ecological None Aquatic, Host USA 46 Public Gc00537 Gi01032 001415_GCAT 312153 16679 640427129 2159 2077 1 0 NC_009379 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished April 12, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas salmonicida BACTERIAL Aeromonas salmonicida salmonicida A449 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Facultative, Rod-shaped, Psychrophile, Nonmotile Medical, Fish Pathogen, Human Pathogen Furunculosis Aquatic Brown trout with furunculosis Canada 58.5 Public Gc00536 Gi00019 000687_GCAT 382245 16723 640427102 4702 4086 1 5 NC_009348 NCBI, NRC-IMB NRC-IMB NRC Unpublished April 6, 2007 Reith M http://www.imb.nrc.ca/cgi-bin/wwwaero.pl?page=staff&name=Mike+Reith Bacteria Actinobacteria Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium glutamicum BACTERIAL Corynebacterium glutamicum R Genome ACTINOBACTERIA Complete complete Rod-shaped, Nonmotile, Facultative, Nonsporulating, Fast growing, Mesophile Biotechnological, Glutamate production, Amino acids production, Food industry None Normal microflora, Soil 30 - 40 Meadow soil in Japan Japan 54.1 Public Gc00535 002586_GCAT 340322 19193 640427110 3300 3052 1 1 NC_009342 NCBI RITE Microbiology 153, 1042-58 April 5, 2007 Inui M mmg-lab@rite.or.jp Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium gilvum BACTERIAL Mycobacterium flavenscens (gilvum) PYR-GCK ABI 12x 581072 ATCC 700033 Genome ACTINOBACTERIA Complete complete Rod-shaped, Nonmotile, Nonsporulating, PAH-degrading, Mesophile Biotechnological None Soil River sediment USA 67 Public Gc00534 Gi01020 001221_GCAT 350054 15760 640427122 5619 5241 1 3 NC_009338 NCBI Joint Genome Institute DOE Unpublished April 12, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Chlorobi Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeovibrioides BACTERIAL Prosthecochloris (Chlorobium) vibrioformis (phaeovibrioides) DSM 265 156547 DSM 265 Genome CHLOROBI Complete complete Photosynthetic, Nitrogen fixation, Green sulfur, Nonmotile, Nonsporulating, Facultative, Mesophile Biotechnological, Energy production, Hydrogen production None Aquatic USA 53 Public Gc00533 Gi00148 000953_GCAT 290318 12607 640427130 1966 1753 1 0 NC_009337 NCBI Joint Genome Institute DOE Unpublished April 12, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Bacillales Bacillaceae Geobacillus Geobacillus thermodenitrificans BACTERIAL Geobacillus thermodenitrificans NG80-2 Genome FIRMICUTES Complete complete Rod-shaped, Facultative, Motile, Thermophile, Sporulating, Hydrocarbon degrading Biotechnological None Oil fields, Aquatic 65 Oil reservoir formation water taken at a depth of 2000 m China 49 Public Gc00532 Gi01891 001105_GCAT 420246 18655 640069312 3607 3392 1 1 NC_009328 NCBI Nankai Univ PNAS 104, 5602-7 March 29, 2007 Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia vietnamiensis BACTERIAL Burkholderia vietnamiensis G4 (R1808) 62273 Genome PROTEOBACTERIA-BETA Complete complete Motile, Facultative, Rod-shaped, Pathogen, Nitrogen fixation, Mesophile Medical, Animal Pathogen, Plant Pathogen, Human Pathogen, Agricultural Pneumonia Soil USA 67 Public Gc00531 Gi00105 000797_GCAT 269482 10696 640069307 7430 7617 3 5 NC_009254, NC_009255, NC_009256 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished March 27, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Peptococcaceae Desulfotomaculum Desulfotomaculum reducens BACTERIAL Desulfotomaculum reducens MI-1 ABI 11x Genome FIRMICUTES Complete complete Sulfate reducer, Sporulating, Metal reducer, Uranium reducer, Chromium reducer, Rod-shaped, Motile, Anaerobe, Mesophile Environmental, Bioremediation None Aquatic 37 Heavy metal-contaminated sediment collected at the Mare Island Naval Shipyard on the San Francisco Bay USA 42 Public Gc00530 Gi00939 000999_GCAT 349161 13424 640069310 3608 3276 1 0 NC_009253 NCBI Joint Genome Institute DOE Unpublished March 24, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis tularensis A.II, Wyoming, WY96-3418 Genome PROTEOBACTERIA-GAMMA Complete complete Rod-shaped, Nonmotile, Aerobe, Pathogen, Mesophile Medical, Animal Pathogen Plague-like illness Host, Aquatic USA 32.3 Public Gc00529 Gi01517 001061_GCAT 418136 18459 640069311 1898 1634 1 0 NC_009257 NCBI Joint Genome Institute, Los Alamos National Laboratory PLoS ONE 2, e947 March 24, 2007 Brettin TS brettin@lanl.gov Archaea Euryarchaeota unclassified unclassified unclassified uncultured methanogenic archaeon RC-I ARCHAEAL Uncultured methanogenic archaeon RC-I Metagenome EURYARCHAEOTA Complete complete Methanogen, Lithotroph Biotechnological None Soil Italian Rice field USA 54.6 Public Gc00528 002574_GCAT 351160 19641 640427153 3179 3085 1 NC_009464 NCBI, Integr8 Max Planck Institute Science 313, 370-2 March 2, 2007 Liesack W http://www.mpi-marburg.mpg.de/liesack/ Archaea Euryarchaeota Methanococcales Methanococcaceae Methanococcus Methanococcus maripaludis ARCHAEAL Methanococcus maripaludis C5 ABI 14x Genome EURYARCHAEOTA-METHANOCOCCI Complete complete Methanogen, Motile, Obligate anaerobe, Nonsporulating, Hydrogenotrophic, Nitrogen fixation, Mesophile, Lithotroph Biotechnological, Energy production None Aquatic 6.5-8 20 - 45 USA 33 Public Gc00527 Gi01306 001819_GCAT 402880 17641 640069316 1780 1813 1 1 NC_009135 NCBI, Integr8, Joint Genome Institute Joint Genome Institute DOE Unpublished March 15, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Oxalobacteraceae Herminiimonas Herminiimonas arsenicoxydans BACTERIAL Herminiimonas (Cenibacterium) arsenicoxydans ULPAs1 689940 DSM 17148, CCM 7303, LMG 22961 Genome PROTEOBACTERIA-BETA Complete complete Detoxification, Arsenic metabolizer, Anaerobe, Rod-shaped, Motile, Mesophile, Heterotroph Biotechnological, Detoxification, Environmental None Aquatic France 54.3 Public Gc00526 Gi00789 000934_GCAT 204773 13467 640069313 3424 3325 1 0 NC_009138 NCBI, Genoscope Genoscope PLoS Genet 13, e53 March 13, 2007 Barbe V vbarbe@genoscope.cns.fr Bacteria Actinobacteria Actinomycetales Pseudonocardiaceae Saccharopolyspora Saccharopolyspora erythraea BACTERIAL Saccharopolyspora erythraea NRRL2338 white 95816 NRRL2338, DSM 40517, ATCC 11635 Genome ACTINOBACTERIA Complete complete Sporulating, Aerobe, Filament-shaped, Nonmotile, Mesophile Biotechnological, Antibiotic production, Erythromycin production None 25 - 32 United Kingdom 71.1 Public Gc00525 002573_GCAT 405948 18489 640069329 8212 7198 1 0 NC_009142 NCBI, Univ of Cambridge Univ of Cambridge Nature Biotechnology 25, 447-453 March 21, 2007 Leadlay P http://www.bio.cam.ac.uk/~pflgroup/ Bacteria Proteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella loihica BACTERIAL Shewanella loihica PV-4 690434 Genome PROTEOBACTERIA-GAMMA Complete complete Psychrophile, Anaerobe, Motile, Rod-shaped Environmental, Bioremediation None Marine Naha Vents Hawaii USA 53.8 Public Gc00524 Gi00556 001497_GCAT 323850 13906 640069331 4602 3859 1 0 NC_009092 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished March 7, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus MIT9301 Genome CYANOBACTERIA Complete complete Carbon cycle, Nonmotile, Mesophile Environmental, MMI None Marine Sargasso Sea at a depth of 90m USA 31.3 Public Gc00523 Gi01229 001370_GCAT 167546 15746 640069322 1641 1907 1 0 NC_009091 NCBI, JCVI J Craig Venter Institute, MIT Moore Foundation Unpublished March 5, 2007 Chisholm S http://csbi.mit.edu/faculty/Members/PennyChisholm Bacteria Proteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter baumannii BACTERIAL Acinetobacter baumannii ATCC 17978 51504 ATCC 17978 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Aerobe, Nonmotile, Heterotroph, Chemoheterotroph, Rod-shaped, Mesophile Medical, Human Pathogen Pneumonia, Meningitis, Septicemia Host Patient with meningitis 38.9 Public Gc00522 Gi01667 000639_GCAT 400667 17477 640069301 3976 3352 1 2 NC_009085 NCBI Yale Univ Genes Dev in press March 1, 2007 Snyder M michael.snyder@yale.edu Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Pichia Pichia stipitis EUKARYAL Pichia stipitis CBS 6054 ABI 362616 Genome FUNGI-ASCOMYCOTA Complete complete Xylose fermenting, Mesophile Biotechnological, Energy production, Ethanol production, Fermentation None USA 41.1 Public Gc00521 Gi00458 002068_GCAT 322104 16843 640281010 15426 5816 8 0 NC_009068, NC_009042-8 NCBI, Joint Genome Institute Joint Genome Institute DOE Nature Biotechnology 25, 319-26 February 27, 2007 Jeffries TW twjeffri@wisc.edu Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 1106a Genome PROTEOBACTERIA-BETA Complete complete Rod-shaped, Motile, Aerobe, Pathogen, Mesophile Medical, Animal Pathogen, Biothreat, Human Pathogen Pneumonia, Bacteremia, Melioidosis Soil USA 67 Public Gc00520 Gi01877 000810_GCAT 357348 16182 640069305 7100 7183 2 0 NC_009076, NC_009078 NCBI, TIGR TIGR NIH-NIAID Unpublished February 28, 2007 DeShazer D david.deshazer@det.amedd.army.mil Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 668 Genome PROTEOBACTERIA-BETA Complete complete Rod-shaped, Motile, Aerobe, Pathogen, Mesophile Medical, Animal Pathogen, Biothreat, Human Pathogen Pneumonia, Bacteremia, Melioidosis Soil USA 68.3 Public Gc00519 Gi01006 000809_GCAT 320373 13953 640069306 7000 7230 2 0 NC_009074, NC_009075 NCBI, TIGR TIGR NIH-NIAID Unpublished February 28, 2007 DeShazer D david.deshazer@det.amedd.army.mil Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei BACTERIAL Burkholderia mallei NCTC 10247 341638 NCTC 10247 Genome PROTEOBACTERIA-BETA Complete complete Pathogen, Rod-shaped, Motile, Aerobe, Mesophile Medical, Human Pathogen, Animal Pathogen, Biothreat Glanders, Pneumonia Host USA 68.5 Public Gc00518 Gi00928 000805_GCAT 320389 13946 640069304 5900 5852 2 0 NC_009079, NC_009080 NCBI TIGR NIH-NIAID Unpublished February 27, 2007 DeShazer D david.deshazer@det.amedd.army.mil Archaea Crenarchaeota Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum calidifontis ARCHAEAL Pyrobaculum calidifontis JCM 11548 ABI 12x 556407 JCM 11548 Genome CRENARCHAEOTA-THERMOPROTEI Complete complete Hyperthermophile, Heterotroph, Facultative, Rod-shaped Biotechnological None Aquatic, Hot spring 90 - 95 Terrestrial hot spring in the Philippines USA 57.2 Public Gc00517 Gi01055 001811_GCAT 410359 18111 640069326 2009 2149 1 0 NC_009073 NCBI, Integr8 Joint Genome Institute DOE Unpublished February 27, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium sp. JLS BACTERIAL Mycobacterium sp JLS ABI 13x Genome ACTINOBACTERIA Complete complete Rod-shaped, Nonmotile, Nonsporulating, Aerobe, PAH-degrading Biotechnological None Soil, Creosote-contaminated soil Creosote-contaminated soil from the Champion International Superfund site in Libby Montana USA 68 Public Gc00516 Gi01021 001222_GCAT 164757 16079 640069320 6048 5739 1 0 NC_009077 NCBI Joint Genome Institute DOE Unpublished February 27, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Rhodobacter Rhodobacter sphaeroides BACTERIAL Rhodobacter sphaeroides ATCC 17029 ABI 14x 99113 ATCC 17029 Genome PROTEOBACTERIA-ALPHA Complete complete Photosynthetic, Rod-shaped, Motile, Facultative, Mesophile Bioremediation, Energy production, Biotechnological, Environmental None 25 - 35 USA 69 Public Gc00515 Gi01030 001413_GCAT 349101 15754 640069328 4420 4025 2 1 NC_009049, NC_009050 NCBI Joint Genome Institute DOE Unpublished February 23, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus pleuropneumoniae BACTERIAL Actinobacillus pleuropneumoniae L20 5b Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Facultative, Nonmotile, Virulent, Parasite, Rod-shaped, Mesophile Medical, Swine Pathogen, Animal Pathogen Porcine pleuropneumonia Host Canada 41 Public Gc00514 Gi01704 000645_GCAT 416269 18221 640069302 2274 2012 1 0 NC_009053 NCBI Institute for Biological Sciences Unpublished February 23, 2007 Bacteria Proteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella baltica BACTERIAL Shewanella baltica OS155 ABI 9x 654238 Genome PROTEOBACTERIA-GAMMA Complete complete Anaerobe, Facultative, Rod-shaped, Motile, Mesophile Biotechnological None Marine 4 Baltic Sea USA 46 Public Gc00513 Gi00551 001488_GCAT 325240 13386 640069330 5127 4307 1 4 NC_009052 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished February 20, 2007 Richardson P microbes@cuba.jgi-psf.org Archaea Euryarchaeota Methanomicrobiales Methanomicrobiaceae Methanoculleus Methanoculleus marisnigri ARCHAEAL Methanoculleus marisnigri JR1 ABI 12X 267484 ATCC 35101 Genome EURYARCHAEOTA-METHANOMICROBIA Complete complete Methanogen, Motile, Anaerobe, Coccus-shaped, Nonsporulating, Mesophile, Lithotroph Biotechnological, Energy production, Wastewater treatment None Marine 21 - 25 Sediment from the Black Sea USA 61.2 Public Gc00512 Gi01052 001795_GCAT 368407 16330 640069318 2478 2489 1 0 NC_009051 NCBI, Integr8, Joint Genome Institute Joint Genome Institute DOE Unpublished February 16, 2007 Anderson I IJAnderson@lbl.gov Archaea Crenarchaeota Desulfurococcales Desulfurococcaceae Staphylothermus Staphylothermus marinus ARCHAEAL Staphylothermus marinus F1 ABI 11.7x 290548 DSM 3639, ATCC 43588 Genome CRENARCHAEOTA-THERMOPROTEI Complete complete Hyperthermophile, Heterotroph, Coccus-shaped, Nonsporulating, Nonmotile, Anaerobe Biotechnological None Marine 92 Hydrothermal marine sediment from Vulcano Island in Italy USA 35 Public Gc00511 Gi01036 001525_GCAT 399550 17449 640069332 1570 1570 1 0 NC_009033 NCBI, Integr8, Joint Genome Institute Joint Genome Institute DOE Unpublished February 21, 2007 Anderson I IJAnderson@lbl.gov Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium thermocellum BACTERIAL Clostridium thermocellum ATCC 27405 40680 ATCC 27405 Genome FIRMICUTES Complete complete Thermophile, Anaerobe, Cellulolytic, Ethanogenic, Rod-shaped, Motile, Sporulating Biotechnological, Energy production None Soil, Aquatic, Host, Intestinal microflora 10 - 65 USA 39 Public Gc00510 Gi00164 000973_GCAT 203119 314 640069309 3800 3191 1 0 NC_009012 NCBI, Joint Genome Institute, ClostriDB Joint Genome Institute, Univ of Rochester DOE Unpublished February 14, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis BACTERIAL Streptococcus sanguinis SK36 Genome FIRMICUTES Complete complete Pathogen, Coccus-shaped, Nonmotile, Facultative, Nonsporulating, Mesophile Medical, Human Pathogen Endocarditis Oral microflora, Host USA 43.4 Public Gc00509 Gi00616 000100_GCAT 388919 13942 640069334 2388 2270 1 0 NC_009009 NCBI, Virginia Commonwealth Univ Commonwealth Biotechnologies, Inc, Virginia Commonwealth Univ NIH-NIDCR J Bacteriol 189, 3166-3175 February 9, 2007 Macrina FL http://www.dentistry.vcu.edu/departments/philips/Faculty/macrina.htm Bacteria Firmicutes Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis BACTERIAL Lactococcus lactis cremoris MG1363 Genome FIRMICUTES Complete complete Facultative, Nonmotile, Non-Pathogen, Coccus-shaped, Mesophile Food industry, Biotechnological None 40 Netherlands 35.7 Public Gc00508 Gi00318 000101_GCAT 416870 18797 640069315 2529 2434 1 0 NC_009004 NCBI Univ of Groningen, Bielefeld Univ J Bacteriology 189, 3256-3270 January 31, 2007 Kok J jan.kok@rug.nl Eukaryota Basidiomycota Ustilaginales Ustilaginaceae Ustilago Ustilago maydis EUKARYAL Ustilago maydis 521 ABI 10x 470636 Genome FUNGI-BASIDIOMYCOTA Quality Draft incomplete Pathogen, Mesophile Agricultural, Plant Pathogen, FGI Corn smut USA Public Gc00507 Gi00675 000102_GCAT 237631 1446 640281003 20500 6902 23 0 AACP01000000 NCBI, Broad Institute LION Bioscience AG, BAYER, Broad Institute NIH-NHGRI Nature 444, 97-101 February 1, 2007 Kahmann R kahmann@mpi-marburg.mpg.de Archaea Euryarchaeota Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum labreanum ARCHAEAL Methanocorpusculum labreanum Z ABI 12X 268426 ATCC 43576, DSM 4855 Genome EURYARCHAEOTA-METHANOMICROBIA Complete complete Methanogen, Nonmotile, Anaerobe, Coccus-shaped, Nonsporulating, Mesophile, Lithotroph Biotechnological, Energy production None Aquatic 37 Surface sediment from the LaBrea Tar Pits in Los Angeles USA 50 Public Gc00506 Gi01051 000103_GCAT 410358 18109 640069317 1804 1739 1 0 NC_008942 NCBI, Integr8, Joint Genome Institute Joint Genome Institute DOE Unpublished February 1, 2007 Anderson I IJAnderson@lbl.gov Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei BACTERIAL Burkholderia mallei NCTC 10229 341634 NCTC 10229 Genome PROTEOBACTERIA-BETA Complete complete Pathogen, Rod-shaped, Motile, Aerobe, Mesophile Medical, Biothreat, Human Pathogen, Animal Pathogen Glanders, Pneumonia Host USA 68.2 Public Gc00505 Gi00926 000104_GCAT 412022 13943 640069303 5800 5510 2 1 NC_008835, NC_008836 NCBI1, NCBI2, TIGR TIGR NIH-NIAID Unpublished January 30, 2007 Bacteria Proteobacteria Alteromonadales Alteromonadaceae Marinobacter Marinobacter hydrocarbonoclasticus BACTERIAL Marinobacter hydrocarbonoclasticus (aquaeolei) VT8 ABI 9x 118038 Genome PROTEOBACTERIA-GAMMA Complete complete Halophile, Oil degrading, Iron oxidizer, Rod-shaped, Motile, Facultative, Hydrocarbon degrading, Heterotroph, Mesophile Biotechnological, Environmental, Bioremediation, Detoxification None Marine 30 Mediterranean seawater near a petroleum refinery USA 57.3 Public Gc00504 Gi00763 000105_GCAT 351348 13239 639633037 4326 3858 1 2 NC_008740 NCBI Joint Genome Institute, Woods Hole Oceanographic Institute DOE Unpublished December 28, 2006 Edwards K http://www.whoi.edu/science/MCG/edwards/ Bacteria Proteobacteria Rhizobiales Bartonellaceae Bartonella Bartonella bacilliformis BACTERIAL Bartonella bacilliformis KC583 111064 ATCC 35685 Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Rod-shaped, Motile, Aerobe, Intracellular, Parasite, Mesophile Medical, Human Pathogen Carrion's disease, Oroya fever Host, Blood 28 USA 38.2 Public Gc00503 Gi01260 000106_GCAT 360095 16249 639633009 1445 1283 1 0 NC_008783 NCBI TIGR NIH-NIAID Unpublished January 4, 2007 Eukaryota Ascomycota Eurotiales Trichocomaceae Aspergillus Aspergillus niger EUKARYAL Aspergillus niger CBS 513.88 ABI 7.5x Genome FUNGI-ASCOMYCOTA Quality Draft complete Filament-shaped, Mesophile Biotechnological, Fermentation, Citric acid production None Netherlands Public Gc00502 Gi00041 000107_GCAT 425011 19275 640281012 33900 14165 NT_166518-38 NCBI, Integr8 Gene Alliance, DSM Nature Biotechnology 25, 221 - 231 January 28, 2007 Stam H hein.stam@dsm.com Bacteria Proteobacteria Burkholderiales unclassified Methylibium Methylibium petroleiphilum BACTERIAL Rubrivivax (Methylibium) gelatinosus (petroleiphilum) PM1 ABI 16x 677456 ATCC BAA-1232 Genome PROTEOBACTERIA-BETA Complete complete MTBE degrader, Methylotroph, Facultative, Rod-shaped, Phototroph, Mesophile Environmental, Bioremediation None Aquatic, Fresh water, Sludge 30 Compost biofilter from a water pollution treatment plant in Los Angeles USA 69.3 Public Gc00501 Gi00587 000108_GCAT 420662 10789 640069319 4044 3819 1 1 NC_008825 NCBI, Joint Genome Institute Joint Genome Institute, Lawrence Livermore National Lab DOE J Bacteriol 189, 931-45 January 29, 2007 Richardson P microbes@cuba.jgi-psf.org Archaea Crenarchaeota Desulfurococcales Pyrodictiaceae Hyperthermus Hyperthermus butylicus ARCHAEAL Hyperthermus butylicus DSM 5456 159206 DSM 5456 Genome CRENARCHAEOTA-THERMOPROTEI Complete complete Hyperthermophile, Sulfur reducer, Nonsporulating, Motile, Anaerobe, Coccus-shaped Biotechnological None Marine 7 95 - 108 Sea floor of a solfataric environment at 9m depth off the shore of Sao Miguel Island Azores European Consortium 53 Public Gc00500 Gi00301 000109_GCAT 415426 208 640069314 1667 1602 1 0 NC_008818 NCBI Epidauros Biotechnologie AG, Univ of Copenhagen European Union Archaea 2, 127-35 January 22, 2007 Garrett RA garrett@mermaid.molbio.ku.dk Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus NATL1A Genome CYANOBACTERIA Complete complete Carbon cycle, Nonmotile, Oval-shaped, Mesophile Environmental, MMI None Marine North Atlantic Ocean at a depth of 30m USA 34 Public Gc00499 Gi01228 000110_GCAT 167555 15660 640069325 1864 2193 1 0 NC_008819 NCBI, JCVI J Craig Venter Institute, MIT Moore Foundation Unpublished January 22, 2007 Chisholm S http://csbi.mit.edu/faculty/Members/PennyChisholm Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus MIT9303 Genome CYANOBACTERIA Complete complete Nonmotile, Oval-shaped, Carbon cycle, Mesophile Environmental, MMI None Marine Sargasso Sea at a depth of 100m USA 50 Public Gc00498 Gi00873 000111_GCAT 59922 13496 640069323 2682 2997 1 0 NC_008820 NCBI, JCVI J Craig Venter Institute, MIT Moore Foundation Unpublished January 22, 2007 Chisholm S http://csbi.mit.edu/faculty/Members/PennyChisholm Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus AS9601 Genome CYANOBACTERIA Complete complete Carbon cycle, Nonmotile, Oval-shaped, Mesophile Environmental, MMI None Marine Arabian Sea at a depth of 50m USA 31.3 Public Gc00497 Gi00874 000112_GCAT 146891 13548 640069321 1669 1921 1 0 NC_008816 NCBI, JCVI J Craig Venter Institute, MIT Moore Foundation Unpublished January 19, 2007 Chisholm S http://csbi.mit.edu/faculty/Members/PennyChisholm Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus MIT9515 Genome CYANOBACTERIA Complete complete Nonmotile, Carbon cycle, Oval-shaped, Mesophile Environmental, MMI None Marine, Surface water Surface waters of the Equatorial Pacific USA 30.8 Public Gc00496 Gi00875 000113_GCAT 167542 13617 640069324 1704 1906 1 0 NC_008817 NCBI, JCVI J Craig Venter Institute, MIT Moore Foundation Unpublished January 19, 2007 Chisholm S http://csbi.mit.edu/faculty/Members/PennyChisholm Eukaryota Ascomycota Eurotiales Trichocomaceae Emericella Emericella nidulans EUKARYAL Aspergillus (Emericella) nidulans FGSC A4 ABI 13x Genome FUNGI-ASCOMYCOTA Quality Draft complete Pathogen, Mesophile Model organism, Medical, Human Pathogen, FGI Aspergillosis Host USA Public Gc00495 Gi00040 000114_GCAT 227321 130 640281000 31000 9500 8 0 AACD00000000 NCBI, Broad Institute Broad Institute NIH-NHGRI Nature 438, 1105-15 December 22, 2005 Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O1:K1:H7 APEC O1:K1:H7 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Rod-shaped, Motile, Facultative, Nonsporulating, Mesophile Medical, Avian Pathogen None Host, Human intestinal microflora Lesion site of a dead turkey with colibacillosis USA 50.5 Public Gc00494 000115_GCAT 405955 16718 640753023 5082 4467 1 2 NC_008563 NCBI Iowa State Univ J Bacteriology 189, 3228-3236 October 4, 2006 Johnson T timjohns@iastate.edu Archaea Crenarchaeota Cenarchaeales Cenarchaeaceae Cenarchaeum Cenarchaeum symbiosum ARCHAEAL Cenarchaeum symbiosum A Axinella mexicana Metagenome CRENARCHAEOTA-CENARCHAEA Complete complete Psychrophile, Symbiont, Rod-shaped, Nonsporulating, Aerobe Evolutionary None Marine, Host, Coastal 10 0-20 meters below sea level off the coast of Santa Barbara USA 57.7 Public Gc00493 Gi00134 000116_GCAT 414004 202 639255505 2045 2066 1 0 DP000238 Integr8 Joint Genome Institute, MBARI NSF PNAS 10, 18296-301 November 29, 2006 DeLong EF http://www.mbari.org/~delong/ Bacteria Proteobacteria Chromatiales Ectothiorhodospiraceae Halorhodospira Halorhodospira halophila BACTERIAL Halorhodospira halophila SL1 ABI 12x 268229 Genome PROTEOBACTERIA-GAMMA Complete complete Alkalophile, Photosynthetic, Halophile, Spiral-shaped, Motile, Phototroph, Mesophile Biotechnological None Aquatic USA 68 Public Gc00492 Gi00973 000117_GCAT 349124 15767 639633026 2674 2407 1 0 NC_008789 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished January 11, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni jejuni 81-176 Penner serotype 23/36 Genome PROTEOBACTERIA-EPSILON Complete complete Motile, Spiral-shaped, Pathogen, Food poisoning, Nonsporulating, Mesophile Medical, Human Pathogen, Animal Pathogen, Poultry Pathogen Diarrhea, Gastroenteritis, Food poisoning Host, Wastewater, Animal feces Feces of an 9-year-old girl with diarrhea in Minnesota in 1981 USA 30 Public Gc00491 Gi01259 000118_GCAT 354242 16135 639633017 1616 1653 1 2 NC_008787 NCBI, TIGR TIGR NIH-NIAID Unpublished January 9, 2007 Bacteria Proteobacteria Burkholderiales Comamonadaceae Verminephrobacter Verminephrobacter eiseniae BACTERIAL Verminephrobacter eiseniae EF01-2 ABI 9.5x Eisenia foetida Genome PROTEOBACTERIA-BETA Complete complete Symbiont, Mesophile Evolutionary None Soil, Host Kidney of the earthworm Eisenia foetida USA 65 Public Gc00490 Gi01545 000119_GCAT 391735 17187 639633065 5566 4908 1 1 NC_008786 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished January 9, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium bovis BACTERIAL Mycobacterium bovis BCG Pasteur 1173P2 Genome ACTINOBACTERIA Complete complete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile, Nonsporulating, Mesophile Medical, Animal Pathogen, Cattle Pathogen, Human Pathogen, Biotechnological, Vaccine development Bovine tuberculosis Host France 65.6 Public Gc00489 Gi00381 000120_GCAT 410289 18059 639633040 4374 3952 1 0 NC_008769 NCBI, Institut Pasteur Institut Pasteur Unpublished January 8, 2007 Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei BACTERIAL Burkholderia mallei SAVP 1 Genome PROTEOBACTERIA-BETA Complete complete Pathogen, Rod-shaped, Motile, Aerobe, Mesophile Medical, Human Pathogen, Animal Pathogen, Biothreat Glanders, Pneumonia Host USA 68 Public Gc00488 Gi00925 000121_GCAT 320388 13947 639633015 5200 5189 2 0 NC_008784, NC_008785 NCBI, TIGR TIGR NIH-NIAID Unpublished January 5, 2007 Bacteria Proteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis BACTERIAL Neisseria meningitidis serogroup C, FAM18 118117 Genome PROTEOBACTERIA-BETA Complete complete Pathogen, Aerobe, Nonmotile, Coccus-shaped, Mesophile Medical, Human Pathogen Meningitis, Septicemia Host 35 - 37 Patient with meningococcal septicemia United Kingdom 51.6 Public Gc00487 Gi00402 000122_GCAT 272831 255 639633045 2194 1917 1 0 NC_008767 NCBI, Sanger Institute Sanger Institute, Max Planck Institute Beowulf Genomics Unpublished January 4, 2007 Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Burkholderiales Comamonadaceae Polaromonas Polaromonas naphthalenivorans BACTERIAL Polaromonas naphthalenivorans CJ2 ABI 11x 376940 ATCC BAA-779, DSM 15660 Genome PROTEOBACTERIA-BETA Complete complete Naphthalene-degrading, Nonsporulating, Nonmotile, Coccus-shaped, Aerobe, Heterotroph, PAH-degrading, Mesophile Environmental, Bioremediation None Aquatic 20 Naphthalene-contaminated freshwater sediment USA 62.5 Public Gc00486 Gi00957 000123_GCAT 365044 13418 639633051 4410 4084 1 8 NC_008781 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished January 4, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. JS42 BACTERIAL Acidovorax sp JS42 ABI 11x 579311 Genome PROTEOBACTERIA-BETA Complete complete Aerobe, Rod-shaped, Motile, Nonsporulating, Mesophile Biotechnological None Soil Nitrobenzene-contaminated sediment USA 66.2 Public Gc00485 Gi00998 000124_GCAT 232721 15685 639633003 4448 4007 1 2 NC_008782 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished January 4, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax avenae BACTERIAL Acidovorax (Pseudomonas) avenae citrulli (pseudoalcaligenes) AAC00-1 ABI 11x Genome PROTEOBACTERIA-BETA Complete compleet Pathogen, Rod-shaped, Motile, Aerobe, Nonsporulating, Mesophile Agricultural, Plant Pathogen Bacterial fruit blotch Host USA 68.5 Public Gc00484 Gi00997 000125_GCAT 397945 15708 639633002 5352 4709 1 0 NC_008752 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished January 4, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella sp. W3-18-1 BACTERIAL Shewanella sp. W3-18-1 ABI 12x Genome PROTEOBACTERIA-GAMMA Complete complete Facultative, Rod-shaped, Motile, Mesophile Biotechnological None Marine, Deep sea, Sediment Pacific Ocean marine sediments at a depth of 630m USA 44.6 Public Gc00483 Gi01396 000126_GCAT 351745 13902 639633059 4708 4044 1 0 NC_008750 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished January 3, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio vulgaris BACTERIAL Desulfovibrio vulgaris vulgaris DP4 ABI 10x Genome PROTEOBACTERIA-DELTA Complete complete Pollutant degrader, Rod-shaped, Motile, Anaerobe, Sulfate reducer, Mesophile Biotechnological, Bioremediation, Oil industry, Environmental None Soil, Aquatic USA 63 Public Gc00482 Gi01250 000127_GCAT 391774 17227 639633022 3462 2941 1 1 NC_008751 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished January 3, 2007 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia enterocolitica BACTERIAL Yersinia enterocolitica 8081 0:8 719455 NCTC 13174 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Heterotroph, Aerobe, Motile, Rod-shaped, Mesophile Medical, Human Pathogen Gastroenteritis, Food poisoning Host 28 - 30 European Consortium 42 Public Gc00481 Gi00703 000001_GCAT 393305 190 640069335 4615 3979 1 1 NC_008800 NCBI, Sanger Institute Sanger Institute, St. Bartholomew's Hospital, Institut Pasteur Beowulf Genomics PLoS Genet 2, e206 December 15, 2006 Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Actinobacteria Actinomycetales Micrococcaceae Arthrobacter Arthrobacter aurescens BACTERIAL Arthrobacter aurescens TC1 Genome ACTINOBACTERIA Complete complete Atrazine metabolism, Motile, Aerobe, Rod-shaped, Nonsporulating, Mesophile Environmental, Bioremediation, Biotechnological None Soil 30 Atrazine-contaminated soil in South Dakota USA 62.3 Public Gc00480 Gi00035 000129_GCAT 290340 12512 639633005 4597 4041 1 2 NC_008711 NCBI Univ of Minnesota, TIGR NSF PLoS Genet 2, e214 December 28, 2006 Sadowsky MJ sadowsky@soils.umn.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium vanbaalenii BACTERIAL Mycobacterium vanbaalenii PYR-1 ABI 12x 160662 PYR-1, DSM 7251, NRRL B-24157 Genome ACTINOBACTERIA Complete complete Rod-shaped, Nonmotile, Nonsporulating, PAH-degrading, Mesophile Biotechnological None Sediment 24 - 37 Contaminated sites exposed to petrogenic chemicals in the watershed of Redfish Bay Texas in 1986 USA 67.8 Public Gc00479 Gi01024 000130_GCAT 350058 15761 639633044 6491 5979 1 0 NC_008726 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished December 27, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Alteromonadales Psychromonadaceae Psychromonas Psychromonas ingrahamii BACTERIAL Psychromonas ingrahamii 37 ABI 11x 677503 Genome PROTEOBACTERIA-GAMMA Complete complete Rod-shaped, Nonmotile, Anaerobe, Psychrophile Environmental None Marine, Deep sea Sea ice off Point Barrow in northern Alaska USA 40.1 Public Gc00478 Gi01471 000131_GCAT 357804 16187 639633052 4559 3541 1 0 NC_008709 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished December 22, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella amazonensis BACTERIAL Shewanella amazonensis SB2B ABI 9x 121955 ATCC 700329 Genome PROTEOBACTERIA-GAMMA Complete complete Facultative, Metal reducer, Motile, Rod-shaped, Mesophile Biotechnological None Mud Shallow marine deposits of the Amazon River delta off of the coast of Brazil USA 53.6 Public Gc00477 Gi00550 000132_GCAT 326297 13385 639633057 4306 3645 1 0 NC_008700 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished December 21, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium sp. KMS BACTERIAL Mycobacterium sp KMS ABI 12x Genome ACTINOBACTERIA Complete complete Rod-shaped, Nonmotile, Nonsporulating, Aerobe, PAH-degrading, Mesophile Biotechnological None Soil, Creosote-contaminated soil Creosote-contaminated soil from the Champion International Superfund site in Libby Montana USA 68.4 Public Gc00476 Gi01022 000133_GCAT 189918 16081 639633042 5737 5460 1 2 NC_008705 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished December 20, 2006 Richardson P microbes@cuba.jgi-psf.org Archaea Crenarchaeota Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum islandicum ARCHAEAL Pyrobaculum islandicum DSM 4184 ABI 12x 158684 DSM 4184 Genome CRENARCHAEOTA-THERMOPROTEI Complete complete Hyperthermophile, Rod-shaped, Neutrophilic, Anaerobe, Motile, Nonsporulating Biotechnological None Aquatic 100 Water from a geothermal power plant in Iceland USA 49.6 Public Gc00475 Gi01057 000134_GCAT 384616 16743 639633053 1826 1978 1 0 NC_008701 NCBI, Integr8, Joint Genome Institute Joint Genome Institute DOE Unpublished December 20, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Nocardioidaceae Nocardioides Nocardioides sp. JS614 BACTERIAL Nocardioides sp. JS614 352430 Genome ACTINOBACTERIA Complete complete Aerobe, Rod-shaped, Nonmotile, Nonsporulating, Mesophile Biotechnological None Soil 30 USA 71.7 Public Gc00474 Gi00411 000135_GCAT 196162 12738 639633046 4985 4645 1 1 NC_008699 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished December 18, 2006 Richardson P microbes@cuba.jgi-psf.org Archaea Crenarchaeota Thermoproteales Thermofilaceae Thermofilum Thermofilum pendens ARCHAEAL Thermofilum pendens Hrk 5 ABI 11x Genome CRENARCHAEOTA-THERMOPROTEI Complete complete Thermophile, Acidophile, Anaerobe, Rod-shaped, Nonsporulating, Motile Biotechnological None Aquatic 88 Solfataric hot spring in Iceland USA 57.7 Public Gc00473 Gi01042 000136_GCAT 368408 16331 639633064 1781 1824 1 1 NC_008698 NCBI, Integr8, Joint Genome Institute Joint Genome Institute DOE Unpublished December 18, 2006 Anderson I IJAnderson@lbl.gov Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Paracoccus Paracoccus denitrificans BACTERIAL Paracoccus denitrificans PD1222 Genome PROTEOBACTERIA-ALPHA Complete complete Aerobe, Nonmotile, Stores polyhydroxybutyrate, Coccus-shaped, Nonsporulating, Hydrogen oxidizer, Mesophile Bioremediation, Biotechnological, Energy conservation, Evolutionary None Soil 25 - 30 USA 66.7 Public Gc00472 Gi00431 000137_GCAT 318586 13020 639633048 4582 4461 2 1 NC_008686, NC_008687 NCBI, Joint Genome Institute Joint Genome Institute, Georgia Institute of Technology DOE Unpublished December 13, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Chlorobi Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeobacteroides BACTERIAL Chlorobium phaeobacteroides DSM 266 156549 DSM 266 Genome CHLOROBI Complete complete Photosynthetic, Nitrogen fixation, Green sulfur, Rod-shaped, Nonmotile, Facultative, Nonsporulating Biotechnological, Energy production, Hydrogen production None Aquatic Anoxic sulfide containing water 19.5 m below surface of meromictic Lake Blankvann in Norway USA 48.4 Public Gc00471 Gi00146 000138_GCAT 290317 12609 639633020 3133 2650 1 0 NC_008639 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished December 11, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium adolescentis BACTERIAL Bifidobacterium adolescentis ATCC 15703 5333 ATCC15703 Genome ACTINOBACTERIA Complete complete Probiotic, Anaerobe, Rod-shaped, Nonsporulating, Nonmotile, Non-Pathogen, Mesophile Biotechnological, Food industry None Host, Intestinal microflora 37 Japan 59.2 Public Gc00470 Gi01394 000139_GCAT 367928 16321 639633010 2089 1631 1 0 NC_008618 NCBI Gifu Univ Unpublished December 6, 2006 Suzuki T suzuki@cc.gifu-u.ac.jp Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium ulcerans BACTERIAL Mycobacterium ulcerans Agy99 Genome ACTINOBACTERIA Complete complete Pathogen, Rod-shaped, Nonmotile, Nonsporulating, Aerobe, Mesophile Medical, Human Pathogen Buruli ulcer Host, Aquatic 32 France 65.5 Public Gc00469 Gi00386 000140_GCAT 362242 16230 639633043 5631 4160 1 1 NC_008611 NCBI, Institut Pasteur, BuruList Institut Pasteur Genome Res 17, 192-200 December 1, 2006 Bacteria Proteobacteria unclassified unclassified unclassified Candidatus Ruthia magnifica BACTERIAL Ruthia magnifica Cm ABI 14x Calyptogena magnifica Metagenome PROTEOBACTERIA-GAMMA Complete complete Chemoautotroph, Sulfur oxidizer, Nitrogen fixation, Carbon sequestration, Endosymbiont Biotechnological, Environmental None Marine, Hydrothermal vent, Host Non isolate USA 35 Public Gc00468 000141_GCAT 413404 16841 639633019 1160 976 1 0 NC_008610 NCBI, Joint Genome Institute Joint Genome Institute DOE Science 315, 998-1000 December 1, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Desulfuromonadales Pelobacteraceae Pelobacter Pelobacter propionicus BACTERIAL Pelobacter propionicus DSM 2379 ABI 15x 157958 Genome PROTEOBACTERIA-DELTA Complete complete Iron reducer, Rod-shaped, Anaerobe, Nonmotile, Nonsporulating, Mesophile Biotechnological None Aquatic, Marine 30 USA 59 Public Gc00467 Gi00807 000142_GCAT 338966 13384 639633050 4008 3576 1 2 NC_008609 NCBI, Joint Genome Institute Joint Genome Institute, Univ of Massachusetts Amherst DOE Unpublished November 30, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter fetus BACTERIAL Campylobacter fetus fetus 82-40 Genome PROTEOBACTERIA-EPSILON Complete complete Motile, Spiral-shaped, Pathogen, Food poisoning, Mesophile Medical, Human Pathogen, Animal Pathogen, Poultry Pathogen Bacteremia, Infertility, Septicemia, Meningitis Host, Wastewater Blood of a human patient who was having a renal transplant USA 33 Public Gc00466 Gi01265 000143_GCAT 360106 16293 639633016 1773 1719 1 0 NC_008599 NCBI, TIGR TIGR NIH-NIAID Unpublished November 29, 2006 Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis novicida U112 Genome PROTEOBACTERIA-GAMMA Complete complete Non-Pathogen, Nonmotile, Aerobe, Nonvirulent, Rod-shaped, Mesophile Medical, Animal Pathogen, Human Pathogen, Biothreat None Aquatic USA 32.5 Public Gc00465 Gi01161 000144_GCAT 401614 16088 639633024 1910 1719 1 0 NC_008601 NCBI, Univ of Washington Univ of Washington Unpublished November 28, 2006 Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium novyi BACTERIAL Clostridium novyi NT Genome FIRMICUTES Complete complete Non-Pathogen, Anaerobe, Sporulating, Motile, Rod-shaped, Mesophile Medical, Anti-tumor agent None Host, Soil USA 28.9 Public Gc00464 000145_GCAT 386415 16820 639633021 2547 2325 1 0 NC_008593 NCBI Johns Hopkins Kimmel Comprehensive Cancer Center, Howard Hughes Medical Institute Nature Biotechnology 24, 1573-80 November 28, 2006 Zhou S sbzhou@jhmi.edu Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus thuringiensis BACTERIAL Bacillus thuringiensis Al Hakam Genome FIRMICUTES Complete complete Pathogen, Facultative, Sporulating, Motile, Rod-shaped, Mesophile Insect Pathogen, Biotechnological, Agricultural Sotto disease Host, Soil Severe human tissue necrosis USA 35.4 Public Gc00463 000146_GCAT 412694 18255 639633008 5257 4736 1 1 NC_008600 NCBI Joint Genome Institute, Los Alamos National Laboratory DOE J. Bacteriology Epub November 27, 2004 Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium avium BACTERIAL Mycobacterium avium 104 Genome ACTINOBACTERIA Complete complete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile, Nonsporulating, Mesophile Medical, Animal Pathogen, Human Pathogen Respiratory infection, Tuberculosis type pulmonary infection Host, Aquatic, Soil 37 AIDS patient USA 69 Public Gc00462 Gi00380 000147_GCAT 243243 88 639633039 5475 5120 1 0 NC_008595 NCBI TIGR NIH-NIAID Unpublished November 20, 2006 Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium smegmatis BACTERIAL Mycobacterium smegmatis MC2 155 117498 Genome ACTINOBACTERIA Complete complete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile, Nonsporulating, Mesophile Medical, Human Pathogen Soft tissue lesions Host 37 Mutant of M smegmatis isolated on 1990 USA 67.4 Public Gc00461 Gi00384 000148_GCAT 246196 92 639633041 6988 6716 1 0 NC_008596 NCBI TIGR NIH-NIAID Unpublished November 20, 2006 Fleischmann RD rdfleisc@tigr.org Bacteria Actinobacteria Actinomycetales Acidothermaceae Acidothermus Acidothermus cellulolyticus BACTERIAL Acidothermus cellulolyticus 11B ABI 13.5x 301709 ATCC 43068 Genome ACTINOBACTERIA Complete complete Acidophile, Thermophile, Cellulolytic, Aerobe, Sporulating Biotechnological, Energy production, Biofuels, Ethanol production None Aquatic, Hot spring 58 Acid hot spring in Yellowstone USA 66.9 Public Gc00460 Gi00919 000149_GCAT 351607 16097 639633001 2445 2157 1 0 NC_008578 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished November 09, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella sp. ANA-3 BACTERIAL Shewanella sp. ANA-3 ABI 11x Genome PROTEOBACTERIA-GAMMA Complete complete Anaerobe, Rod-shaped, Motile, Mesophile Biotechnological None Soil, Host 37 Arsenate treated wood pier that was in a brackish estuary (Eel Pond) in Woods Hole Massachusetts USA 48 Public Gc00459 Gi00967 000150_GCAT 94122 13905 639633058 4972 4111 1 1 NC_008577 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished November 08, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria unclassified unclassified Magnetococcus Magnetococcus sp. MC-1 BACTERIAL Magnetococcus sp. MC-1 ABI 16x Genome PROTEOBACTERIA-ALPHA Complete complete Magnetite production, Iron reducer, Motile, Facultative, Coccus-shaped, Mesophile Biotechnological None Marine Water from the Pettaquamscutt Estuary in Rhode Island USA 54.2 Public Gc00458 Gi00343 000151_GCAT 156889 262 639633036 4700 3716 1 0 NC_008576 NCBI, Joint Genome Institute Joint Genome Institute, Univ of Southern California DOE Unpublished November 08, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Bacteroidetes Flavobacteriales Flavobacteriaceae Gramella Gramella forsetii BACTERIAL Gramella forsetii KT0803 Genome BACTEROIDETES Complete complete Rod-shaped, Aerobe, Mesophile Environmental None Marine Concentrated seawater collected from the German Bight in the North Sea Germany 36.6 Public Gc00457 Gi01472 000024_GCAT 411154 19061 639633025 3789 3584 1 0 NC_008571 NCBI Max Planck Institute MGE Unpublished November 06, 2006 Gloeckner FO http://www.mpi-bremen.de/en/Microbial_Genomics_Group.html Bacteria Proteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas hydrophila BACTERIAL Aeromonas hydrophila hydrophila ATCC7966 37798 ATCC7966, CDC 359-60, NCTC 8049 Genome PROTEOBACTERIA-GAMMA Complete complete Facultative, Motile, Pathogen, Rod-shaped, Mesophile Medical, Fish Pathogen, Human Pathogen, Animal Pathogen, Poultry Pathogen, Swine Pathogen Gastroenteritis, Septicemia, Food poisoning Aquatic, Food, Wastewater, Fresh water 22 - 28 Canned milk from the United States USA 61.6 Public Gc00456 Gi00018 000153_GCAT 380703 16697 639633004 4744 4122 1 0 NC_008570 NCBI TIGR, Univ of Maryland NSF J Bacteriology 188, 8272-82 November 06, 2006 Martin-Carnahan A acarnaha@epi.umaryland.edu Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes Manfredo (M5) M5 Genome FIRMICUTES Complete complete Pathogen, Facultative, Nonmotile, Nonsporulating, Coccus-shaped, Mesophile Medical, Human Pathogen Rheumatic fever Host, Nasopharyngeal microflora 30 - 35 Patient in the 1950's in Chicago United Kingdom 38.6 Public Gc00455 Gi00615 000154_GCAT 160491 270 640069333 1840 1745 1 0 NC_009332 NCBI, Sanger Institute Sanger Institute, Univ of Newcastle Beowulf Genomics J Bacteriology 189, 1473-1477 September 29, 2006 Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Rhodocyclales Rhodocyclaceae Azoarcus Azoarcus sp. BH72 BACTERIAL Azoarcus sp. BH72 49226 Genome PROTEOBACTERIA-BETA Complete complete Diazotroph, Nitrogen fixation, Obligate endophyte, Non-Pathogen, Rod-shaped, Motile, Facultative, Mesophile Biotechnological, Agricultural None Soil, Host 26 Germany 67.9 Public Gc00454 Gi00046 000155_GCAT 62928 13217 639633007 4376 3989 1 0 NC_008702 NCBI, Bielefeld Univ Bielefeld Univ, MWG-Biotech BMBF Nat Biotechnol 24, 1385-91 October 22, 2006 Puhler A puehler@genetik.uni-bielefeld.de Bacteria Proteobacteria Syntrophobacterales Syntrophobacteraceae Syntrophobacter Syntrophobacter fumaroxidans BACTERIAL Syntrophobacter fumaroxidans MPOB 161775 Genome PROTEOBACTERIA-DELTA Complete complete Syntrophic, Biodegradation, Propionate metabolism, Carbon cycle, Rod-shaped, Nonsporulating, Nonmotile, Anaerobe, Mesophile Biotechnological, Energy production, Hydrogen production, Bioreactors None Aquatic 37 Granular sludge from an anaerobic sludge bed reactor USA 59 Public Gc00453 Gi00642 000156_GCAT 335543 13013 639633063 4990 4064 1 0 NC_008554 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished October 26, 2006 Richardson P microbes@cuba.jgi-psf.org Archaea Euryarchaeota Methanosarcinales Methanosaetaceae Methanosaeta Methanothrix thermophila ARCHAEAL Methanosaeta (Methanothrix) thermophila PT ABI 11x 159807 DSM 6194 Genome EURYARCHAEOTA-METHANOMICROBIA Complete complete Thermophile, Methanogen, Acetotrophic, Nonmotile, Nonsporulating, Anaerobe, Lithotroph Biotechnological, Energy production, Biofuels None Aquatic, Sediment, Rice paddies USA 53.5 Public Gc00452 Gi00974 000157_GCAT 349307 15765 639633038 1879 1696 1 0 NC_008553 NCBI, Integr8, Joint Genome Institute Joint Genome Institute DOE Unpublished October 25, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus thermophilus BACTERIAL Streptococcus thermophilus LMD-9 493745 Genome FIRMICUTES Complete complete Facultative, Thermotolerant, Coccus-shaped, Nonmotile, Facultative, Nonsporulating, Homofermentative, Nonprobiotic, Mesophile Food industry, Biotechnological, Yogurt production None Milk 37 USA 39.1 Public Gc00451 Gi00623 000158_GCAT 322159 13773 639633062 1856 1710 1 2 NC_008532 Joint Genome Institute Joint Genome Institute, Fidelity Systems Inc, Univ of Nebraska DOE PNAS 103, 15611-6 October 18, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis BACTERIAL Lactococcus lactis cremoris SK11 348311 Genome FIRMICUTES Complete complete Facultative, Nonmotile, Coccus-shaped, Nonsporulating, Mesophile Food industry, Biotechnological, Cheese production None 40 USA 35.9 Public Gc00450 Gi00319 000159_GCAT 272622 401 639633031 2438 2384 1 5 NC_008527 NCBI, Joint Genome Institute Joint Genome Institute, Utah State Univ, Fidelity Systems Inc DOE PNAS 103, 15611-6 October 18, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cenocepacia BACTERIAL Burkholderia cenocepacia HI2424, BCC1 Genome PROTEOBACTERIA-BETA Complete complete Pathogen, Motile, Facultative, Rod-shaped, Mesophile Medical, Human Pathogen Pneumonia Host, Soil Agricultural soil in upstate NY USA 66.4 Public Gc00449 Gi00806 000160_GCAT 331272 13918 639633014 7536 6763 3 1 NC_008542-4 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished October 25, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Roseobacter Roseobacter denitrificans BACTERIAL Roseobacter denitrificans OCh 114 ABI 9.6x 109965 Plants Genome PROTEOBACTERIA-ALPHA Complete complete Photosynthetic, Rod-shaped, Motile, Aerobe, Phototroph, Mesophile Biotechnological, Environmental None Aquatic USA 59 Public Gc00448 Gi00726 000161_GCAT 375451 16426 639633056 4133 3946 1 4 NC_008209 NCBI, TGen Arizona State Univ, TGen NSF J Bacteriology 189, 683-690 June 22, 2006 Blankenship RE Blankenship@asu.edu Eukaryota Apicomplexa unclassified Theileriidae Theileria Theileria annulata EUKARYAL Theileria annulata Ankara clone C9 ABI 10x Genome PROTISTS-APICOMPLEXA Quality Draft complete Intracellular, Parasite, Pathogen, Mesophile Medical, Animal Pathogen Tropical theileriosis Host United Kingdom 32.5 Public Gc00296 Gi00651 000162_GCAT 353154 153 8351 3792 4 0 NW_001091927-34 NCBI, Sanger Institute Sanger Institute, Univ of Glasgow Beowulf Genomics Science 309, 134-7 July 1, 2005 Berriman M mb4@sanger.ac.uk Bacteria Actinobacteria Actinomycetales Micrococcaceae Arthrobacter Arthrobacter sp. FB24 BACTERIAL Arthrobacter sp. FB24 Genome ACTINOBACTERIA Complete complete Radiation resistant, Hydrocarbon degrading, Aerobe, Rod-shaped, Motile, Mesophile Environmental, Bioremediation, Biotechnological None Soil Chromate and xylene enriched soil USA 65.5 Public Gc00445 Gi00036 000163_GCAT 290399 12640 639633006 4698 4146 1 3 NC_008541 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished October 24, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Acidobacteria Solibacterales Solibacteraceae Solibacter Solibacter usitatus BACTERIAL Solibacter (Acidobacteria) usitatus Ellin6076 Genome ACIDOBACTERIA Complete complete Acidophile, Chemoorganotroph, Aerobe, Heterotroph, Nonmotile, Rod-shaped, Nonsporulating, Mesophile, Oligotroph Bioremediation, Environmental None Soil, Aquatic 30 USA 61.9 Public Gc00446 Gi00006 000164_GCAT 234267 12638 639633060 9965 7826 1 0 NC_008536 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished October 16, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus gasseri BACTERIAL Lactobacillus gasseri ATCC 33323 13671 ATCC 33323 Genome FIRMICUTES Complete complete Probiotic, Rod-shaped, Facultative, Nonmotile, Mesophile Food industry, Biotechnological None Intestinal microflora, Host 25 - 35 USA 35.3 Public Gc00447 Gi00314 000165_GCAT 324831 84 639633030 1900 1755 1 0 NC_008530 NCBI, Joint Genome Institute Joint Genome Institute, Fidelity Systems Inc, North Carolina State Univ DOE PNAS 103, 15611-6 October 18, 2006 Klaenhammer T http://fsweb2.schaub.ncsu.edu/trkwebsite/Main/main.htm Bacteria Firmicutes Lactobacillales Leuconostocaceae Leuconostoc Leuconostoc mesenteroides BACTERIAL Leuconostoc mesenteroides mesenteroides ATCC 8293 505624 ATCC 8293 Genome FIRMICUTES Complete complete Facultative, Coccus-shaped, Vancomycin resistant, Mesophile Food industry, Biotechnological, Lactic acid production None 20 - 30 USA 37.7 Public Gc00444 Gi00330 000166_GCAT 203120 315 639633034 2038 1970 1 1 NC_008531 NCBI, Joint Genome Institute Joint Genome Institute, Fidelity Systems Inc, North Carolina State Univ DOE PNAS 103, 15611-6 October 24, 2006 Breidt F http://www.cals.ncsu.edu/food_science/faculty/Breidt/ Bacteria Firmicutes Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus delbrueckii BACTERIAL Lactobacillus delbrueckii bulgaricus ATCC BAA-365 373993 ATCC BAA-365 Genome FIRMICUTES Complete complete Probiotic, Rod-shaped, Facultative, Nonmotile, Mesophile Food industry, Biotechnological, Lactic acid production None Intestinal microflora, Host 42 Derived from a French starter culture USA 49.7 Public Gc00443 Gi00313 000167_GCAT 321956 403 639633029 1900 1721 1 0 NC_008529 NCBI, Joint Genome Institute Joint Genome Institute, Fidelity Systems Inc, Univ of Wisconsin-Madison DOE PNAS 103, 15611-6 October 18, 2006 Richardson P microbes@cuba.jgi-psf.org Eukaryota unclassified Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila EUKARYAL Tetrahymena thermophila SB210 (Macronucleus) ABI Genome PROTISTS-ALVEOLATA Quality Draft complete Mesophile Biotechnological, Protein production None Aquatic USA 22.3 Public Gc00442 Gi00648 000168_GCAT 312017 12564 103927 27000 225 0 NZ_AAGF00000000 NCBI, TIGR TIGR NSF PLoS Biol 4, e286 September 6, 2006 Eisen JA http://www.tigr.org/~jeisen/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Buchnera Buchnera aphidicola BACTERIAL Buchnera aphidicola Cc Cinara cedri Genome PROTEOBACTERIA-GAMMA Complete complete Insect endosymbiont, Endosymbiont, Mesophile Biotechnological None Host Spain 20.1 Public Gc00441 Gi00103 000169_GCAT 372461 16372 639633013 420 357 1 0 NC_008513 NCBI Univ of Valencia Science 314, 312-3 October 18, 2006 Moya A http://www.uv.es/cavanilles/personal/Andres_Moya/ Bacteria Firmicutes Lactobacillales Leuconostocaceae Oenococcus Oenococcus oeni BACTERIAL Oenococcus (Leuconostoc) oeni MCW PSU-1 Genome FIRMICUTES Complete complete Facultative, Mesophile Food industry, Biotechnological, Malolactic fermentation None 17 - 25 Penn State University USA 37.9 Public Gc00440 Gi00417 000170_GCAT 203123 317 639633047 1800 1691 1 0 NC_008528 NCBI, Joint Genome Institute Joint Genome Institute, Fidelity Systems Inc, Univ of California, Davis DOE PNAS 103, 15611-6 October 18, 2006 Mills D http://wineserver.ucdavis.edu/people/Faculty/mills/index.htm Bacteria Firmicutes Lactobacillales Lactobacillaceae Pediococcus Pediococcus pentosaceus BACTERIAL Pediococcus pentosaceus ATCC 25745 16204 ATCC 25745 Genome FIRMICUTES Complete complete Facultative, Nonmotile, Coccus-shaped, Nonsporulating, Mesophile Food industry, Biotechnological, Lactic acid production None Plants, Fruits 30 USA 37.4 Public Gc00439 Gi00437 000171_GCAT 278197 398 639633049 1800 1755 1 0 NC_008525 NCBI, Joint Genome Institute Joint Genome Institute, Fidelity Systems Inc, Utah State Univ DOE PNAS 103, 15611-6 October 18, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus casei BACTERIAL Lactobacillus casei ATCC 334 28985 ATCC 334 Genome FIRMICUTES Complete complete Probiotic, Rod-shaped, Facultative, Mesophile Food industry, Biotechnological, Lactic acid production None Intestinal microflora, Host 30 - 40 USA 46.6 Public Gc00438 Gi00311 000172_GCAT 321967 402 639633028 2895 2751 1 1 NC_008526 NCBI, Joint Genome Institute Joint Genome Institute, Fidelity Systems Inc, Utah State Univ DOE PNAS 103, 15611-6 October 18, 2006 Broadbent J http://www.usu.edu/familylife/nfs/gee%20whiz/Jeff.PDF Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae D39 Genome FIRMICUTES Complete complete Facultative, Pathogen, Nonmotile, Nonsporulating, Coccus-shaped, Alpha-hemolytic, Mesophile Medical, Human Pathogen Pneumonia, Meningitis, Otitis media Host, Nasopharyngeal microflora 30 - 35 USA 40 Public Gc00437 Gi00732 000173_GCAT 373153 16374 639633061 2000 1914 1 0 NC_008533 NCBI TIGR, Indiana Univ NSF J Bacteriol 189, 38-51 October 12, 2006 Winkler ME mwinkler@bio.indiana.edu Bacteria Firmicutes Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus brevis BACTERIAL Lactobacillus brevis ATCC 367 13244 ATCC 367 Genome FIRMICUTES Complete complete Probiotic, Rod-shaped, Motile, Aerobe, Mesophile Food industry, Biotechnological None Soil, Intestinal microflora, Host 25 - 35 USA 46 Public Gc00436 Gi00310 000174_GCAT 387344 404 639633027 2291 2185 1 2 NC_008497 NCBI, Joint Genome Institute Joint Genome Institute, Fidelity Systems Inc, UCSD DOE PNAS 103, 15611-6 October 18, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria unclassified unclassified Candidatus Carsonella Candidatus Carsonella ruddii BACTERIAL Carsonella ruddii PV Pachypsylla venusta Genome PROTEOBACTERIA-GAMMA Complete complete Insect endosymbiont, Endosymbiont, Mesophile Evolutionary, Agricultural None Host USA 16 Public Gc00435 000175_GCAT 387662 17977 639633018 159 182 1 0 NC_008512 NCBI Kitasato Univ, RIKEN Science 314, 267 October 17, 2006 Nakabachi, A bachi@email.arizona.edu Bacteria Spirochaetes Spirochaetales Leptospiraceae Leptospira Leptospira borgpetersenii BACTERIAL Leptospira borgpetersenii hardjobovis JB197 Hardjo-bovis JB197 Genome SPIROCHAETES Complete complete Pathogen, Spiral-shaped, Nonsporulating, Motile, Aerobe, Mesophile Medical, Animal Pathogen Leptospirosis Host, Soil, Aquatic International 40 Public Gc00434 000176_GCAT 355277 16148 639633032 3900 2880 2 0 NC_008510, NC_008511 NCBI, AGRF NADC, Monash Univ, AGRF PNAS 103, 14560-5 October 13, 2006 Zuerner R http://www.ars.usda.gov/pandp/people/people.htm?personid=6333 Bacteria Spirochaetes Spirochaetales Leptospiraceae Leptospira Leptospira borgpetersenii BACTERIAL Leptospira borgpetersenii hardjobovis L550 Hardjo-bovis L550 Genome SPIROCHAETES Complete complete Pathogen, Spiral-shaped, Nonsporulating, Motile, Aerobe, Mesophile Medical, Animal Pathogen, Human Pathogen Leptospirosis Host, Soil, Aquatic Human clinical sample Australia 40 Public Gc00433 Gi00327 000177_GCAT 355276 16146 639633033 3920 2945 2 0 NC_008508, NC_008509 NCBI, AGRF NADC, Monash Univ, AGRF PNAS 103, 14560-5 October 13, 2006 Zuerner R http://www.ars.usda.gov/pandp/people/people.htm?personid=6333 Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa PA14 UCBPP Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Aerobe, Motile, Rod-shaped, Mesophile, Heterotroph Medical, Human Pathogen, Animal Pathogen, Plant Pathogen Opportunistic infection, Nocosomial infection Aquatic, Host, Wastewater, Soil 25 - 30 Human clinical isolate USA 66.3 Public Gc00432 Gi00489 000178_GCAT 208963 386 639279310 6537 5892 1 0 NC_008463 NCBI, Harvard Univ, Pseudomonas Genome DBase HPGC Genome Biol 7, R90 October 11, 2006 Ausubel FM http://ausubellab.mgh.harvard.edu/ Bacteria Proteobacteria Rhizobiales Bradyrhizobiaceae Rhodopseudomonas Rhodopseudomonas palustris BACTERIAL Rhodopseudomonas palustris BisA53 ABI 12x Genome PROTEOBACTERIA-ALPHA Complete complete Carbon dioxide fixation, Rod-shaped, Motile, Facultative, Phototroph, Nitrogen fixation, Hydrogen production, Pollutant degrader, Mesophile Biotechnological, Hydrogen production None Aquatic, Soil 25 - 30 Dutch site USA 64.4 Public Gc00431 Gi00961 000179_GCAT 316055 15751 639279312 5505 4878 1 0 NC_008435 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished October 4, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia ambifaria BACTERIAL Burkholderia cepacia AMMD ABI 13x 681923 ATCC BAA-244, LMG 19182 Genome PROTEOBACTERIA-BETA Complete complete Rod-shaped, Nonsporulating, Motile, Facultative, Rhizosphere-colonizing, Nitrogen fixation, Pollutant degrader, Mesophile Biocontrol, Agricultural None Host, Rhizosphere 30 - 42 Healthy pea plants in Wisconsin in 1985 USA 66.8 Public Gc00430 Gi00924 000180_GCAT 339670 13490 637000047 7483 6572 3 1 NC_008390-2 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished September 21, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis OSU18 ABI, 454 39x Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Nonmotile, Aerobe, Nonsporulating, Rod-shaped, Mesophile Medical, Human Pathogen, Biothreat Tularemia Host, Aquatic USA 32.2 Public Gc00429 Gi00943 000181_GCAT 393011 17265 637000112 1895 1555 1 0 NC_008369 NCBI, BCM-HGSC BCM-HGSC NIH-NIAID J Bacteriol 188, 6977-6985 September 25, 2006 Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Bacteria Proteobacteria Rhodobacterales Hyphomonadaceae Hyphomonas Hyphomonas neptunium BACTERIAL Hyphomonas neptunium ATCC 15444 98403 ATCC 15444 Genome PROTEOBACTERIA-ALPHA Complete complete Budding, Rod-shaped, Motile, Aerobe, Mesophile Biotechnological None Marine 37 USA 61.9 Public Gc00428 Gi00302 000182_GCAT 228405 15721 637000135 3705 3505 1 0 NC_008358 NCBI Univ of Georgia, TIGR NSF J. Bacteriol 188, 6841-6850 September 14, 2006 Badger J jbadger@tigr.org Bacteria Firmicutes Clostridiales Syntrophomonadaceae Syntrophomonas Syntrophomonas wolfei BACTERIAL Syntrophomonas wolfei Goettingen ABI 11x 157804 DSM 2245B Genome FIRMICUTES Complete complete Anaerobe, Syntrophic, Fatty-acid-oxidizer, Nonphototrophic, Carbon cycle, Spiral-shaped, Motile, Mesophile Hydrogen production, Energy production, Biotechnological, Bioremediation, Environmental None USA 44.9 Public Gc00427 Gi00643 000183_GCAT 335541 13014 637000316 2936 2504 1 0 NC_008346 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished September 14, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella frigidimarina BACTERIAL Shewanella frigidimarina NCIMB 400 47442 Genome PROTEOBACTERIA-GAMMA Complete complete Iron reducer, Facultative, Motile, Rod-shaped, Mesophile Biotechnological None Marine 20 - 22 North Sea near Aberdeen United Kingdom USA 41.6 Public Gc00426 Gi00553 000184_GCAT 318167 13391 637000257 4845 4029 1 0 NC_008345 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished September 14, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhodobacterales Hyphomonadaceae Maricaulis Maricaulis maris BACTERIAL Maricaulis maris MCS10 ABI 13x Genome PROTEOBACTERIA-ALPHA Complete complete Rod-shaped, Nonsporulating, Motile, Facultative, Mesophile Environmental, Bioremediation None Aquatic 20 - 25 Puget Sound in Washington USA 62.7 Public Gc00425 Gi01017 000185_GCAT 394221 17333 637000157 3368 3063 1 0 NC_008347 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished September 14, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas eutropha BACTERIAL Nitrosomonas eutropha C91 (C71) 267213 Genome PROTEOBACTERIA-BETA Complete complete Carbon sequestration, Autotroph, Nitrifying, Ammonia-oxidizer, Chemolithotroph, Motile, Aerobe, Mesophile Biotechnological, Environmental None Aquatic USA 48.5 Public Gc00424 Gi00407 000186_GCAT 335283 13913 637000196 2661 2444 1 2 NC_008344 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished September 13, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhodospirillales Acetobacteraceae Granulibacter Granulibacter bethesdensis BACTERIAL Granulibacter bethesdensis CGDNIH1 689850 Genome PROTEOBACTERIA-ALPHA Complete complete Rod-shaped, Mesophile Medical, Human Pathogen Chronic granulomatous Host, Lymph nodes 35 39 year old man with Chronic granulomatous disease USA 59 Public Gc00423 Gi01540 000187_GCAT 391165 17111 637000123 2708 2437 1 0 NC_008343 NCBI RML-NIAID, Integrated Genomics Inc NIH Unpublished September 13, 2006 Bacteria Proteobacteria Chromatiales Ectothiorhodospiraceae Alkalilimnicola Alkalilimnicola ehrlichei BACTERIAL Alkalilimnicola ehrlichei MLHE-1 ABI 12x 689443 Genome PROTEOBACTERIA-GAMMA Complete complete Arsenic metabolizer, Chemoautotroph, Anaerobe, Facultatively autotroph, Arsenite oxidizer, Mesophile, Chemolithotroph Biotechnological, Environmental None Aquatic Mono Lake in California USA 67.5 Public Gc00422 Gi00971 000188_GCAT 187272 15763 637000005 3275 2865 1 0 NC_008340 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished September 12, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella sp. MR-4 BACTERIAL Shewanella sp. MR-4 ABI 11x Genome PROTEOBACTERIA-GAMMA Complete complete Anaerobe, Motile, Rod-shaped, Mesophile Biotechnological None Marine Five meter depth in the Black sea USA 47 Public Gc00421 Gi00968 000189_GCAT 60480 13904 637000259 4706 3924 1 0 NC_008321 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished September 1, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium difficile BACTERIAL Clostridium difficile 630 (epidemic type X) 692637 Genome FIRMICUTES Complete complete Pathogen, Obligate anaerobe, Sporulating, Motile, Chemoorganotroph, Rod-shaped, Mesophile Medical, Human Pathogen, Animal Pathogen, Swine Pathogen Diarrhea, Colitis, Peritonitis Host United Kingdom 29 Public Gc00420 Gi00158 000190_GCAT 272563 78 640069308 4290 3742 1 1 NC_009089 NCBI, Sanger Institute, ClostriDB Sanger Institute Beowulf Genomics Nature Genetics 38(7):779-86 July 1, 2006 Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Eukaryota Chlorophyta Mamiellales Mamiellaceae Ostreococcus Ostreococcus tauri EUKARYAL Ostreococcus tauri OTH95 ABI Genome PLANTS-CHLOROPHYTA Quality Draft Carbon fixation, Small, Photosynthetic, Coccus-shaped, Mesophile Evolutionary None Aquatic Thau lagoon in France France Public Gc00419 Gi00579 000191_GCAT 70448 12912 12560 7892 20 0 CR954201 NCBI, algaeBASE Laboratoire Arago PNAS 103, 11647-52 August 1, 2006 Moreau H h.moreau@obs-banyuls.fr Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria welshimeri BACTERIAL Listeria welshimeri SLCC5334 6b 14895 Genome FIRMICUTES Complete complete Non-Pathogen, Rod-shaped, Nonsporulating, Facultative, Motile, Mesophile Medical None Soil, Aquatic, Food Germany 36.4 Public Gc00418 Gi00334 000192_GCAT 386043 13443 639633035 2814 2774 1 0 NC_008555 NCBI, Univ of Bielefeld Univ of Giessen, Univ of Wuerzburg BMBF J Bacteriol 188, 7405-15 October 25, 2006 Chakraborty T Trinad.Chakraborty@mikrobio.med.uni-giessen.de Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Rhodobacter Rhodobacter sphaeroides BACTERIAL Rhodobacter sphaeroides 2.4.1 240801 Genome PROTEOBACTERIA-ALPHA Complete complete Photosynthetic, Rod-shaped, Motile, Facultative, Mesophile Bioremediation, Energy production, Biotechnological, Environmental None 25 - 35 USA 68.8 Public Gc00417 Gi00508 000193_GCAT 272943 56 640069327 4131 3857 2 3 NC_007493, NC_007494 NCBI, Joint Genome Institute, Univ of Texas - Houston, ORNL, BCM-HGSC Joint Genome Institute, Univ of Texas - Houston, BCM-HGSC DOE, NIH-NIGMS Unpublished October 7, 2005 Richardson P microbes@cuba.jgi-psf.org Bacteria Cyanobacteria Chroococcales unclassified Synechococcus Synechococcus sp. CC9311 BACTERIAL Synechococcus sp. CC9311 529133 Genome CYANOBACTERIA Complete complete Photosynthetic, Ocean carbon cycle, Motile, Mesophile, Photoautotroph Biotechnological None Marine Oligotrophic edge of the California Current in 1993 USA 52 Public Gc00416 Gi00638 000194_GCAT 64471 12530 637000309 2606 2892 1 0 NC_008319 NCBI UCSD, TIGR NSF PNAS 103, 13555-9 September 1, 2006 Palenik BP bpalenik@ucsd.edu Bacteria Proteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella sp. MR-7 BACTERIAL Shewanella sp. MR-7 ABI 9x Genome PROTEOBACTERIA-GAMMA Complete complete Anaerobe, Rod-shaped, Motile, Mesophile Biotechnological None Marine Sixty meter depth in the Black sea USA 47 Public Gc00415 Gi00969 000195_GCAT 60481 13903 637000260 4792 4006 1 1 NC_008322 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished September 1, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus necator BACTERIAL Ralstonia eutropha H16 122962 ATCC 17699 Genome PROTEOBACTERIA-BETA Complete complete Chemoautotroph, Aerobe, Heterotroph, Rod-shaped, Motile, Mesophile Bioremediation, Environmental, Biotechnological, Bioplastic producer None Aquatic, Soil 30 Sludge Germany 66 Public Gc00414 Gi00499 000196_GCAT 381666 13603 640427136 6964 6206 2 0 NC_008313, NC_008314 NCBI, GenoMik Network Goettingen, Goettingen Genomics Laboratory Humboldt Univ, Berlin, Georg-August-Univ Goettingen, Univ of Munster BMBF Unpublished August 30, 2006 Friedrich B http://www.biologie.hu-berlin.de/~microbio/home.html Bacteria Proteobacteria Pasteurellales Pasteurellaceae Histophilus Histophilus somni BACTERIAL Haemophilus somnus 129PT Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Rod-shaped, Facultative, Mesophile Medical, Cattle Pathogen, Human Pathogen, Animal Pathogen Thrombotic-meningoencephalitis, Pneumonia, Abortion, Arthritis, Myocarditis, Septicemia, Constriction of blood vessels Host 35 - 37 USA 37 Public Gc00413 Gi00286 000197_GCAT 205914 322 637000127 2007 1792 1 1 NC_008309 NCBI, Joint Genome Institute Joint Genome Institute, Virginia Tech DOE J Bacteriology 189, 1890-8 August 22, 2006 Inzana T http://www.vetmed.vt.edu/Organization/Departments/DBSP/Faculty/tominzana/Tinzana.html Bacteria Actinobacteria Actinomycetales Frankiaceae Frankia Frankia alni BACTERIAL Frankia alni ACN14a Plants Genome ACTINOBACTERIA Complete complete Aerobe, Mesophile, Chemoorganotroph, Nitrogen fixation, Non-Pathogen, Mesophile Biotechnological None Soil, Host Green alder growing in Tadoussac Canada France 72 Public Gc00412 Gi00257 000198_GCAT 326424 17403 637000115 7497 6711 1 0 NC_008278 Genoscope, NCBI, FrankiaGenomes Genoscope Genome Res 17, 7-15 August 3, 2006 Choisne N choisne@genoscope.cns.fr Bacteria Proteobacteria Oceanospirillales Alcanivoracaceae Alcanivorax Alcanivorax borkumensis BACTERIAL Alcanivorax borkumensis SK2 267984 Genome PROTEOBACTERIA-GAMMA Complete complete Hydrocarbon degrading, Oligotroph, Nonmotile, Rod-shaped, Halophile, Mesophile Oil removal, Biotechnological None Marine Seawater sediment sample in the North Sea Germany 54.7 Public Gc00411 Gi00022 000199_GCAT 393595 13005 637000004 3120 2755 1 0 NC_008260 NCBI, Bielefeld Univ Bielefeld Univ BMBF Unpublished July 23, 2006 Puhler A puehler@genetik.uni-bielefeld.de Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Shigella Shigella flexneri BACTERIAL Shigella flexneri 5b 8401 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Facultative, Rod-shaped, Mesophile Medical, Biothreat, Human Pathogen Dysenteria, Shigellosis, Food poisoning Host 37 China 50 Public Gc00410 Gi01501 000200_GCAT 373384 16375 637000265 4574 4116 1 0 NC_008258 NCBI Microbial Genome Center, Beijing Chinese Ministry of Public Health BMC Genomics 7, 173 July 21, 2006 Nie H nh121212@hotmail.com Archaea Euryarchaeota Halobacteriales Halobacteriaceae Haloquadratum Haloquadratum walsbyi ARCHAEAL Haloquadratum walsbyi HBSQ001 ABI 6.5x 681614 DSM 16790 Genome EURYARCHAEOTA-HALOBACTERIA Complete complete Halophile, Phototroph, Square-shaped, Nonmotile, Mesophile Evolutionary, Biotechnological None Aquatic, Solar saltern Spanish solar saltern Germany 47.9 Public Gc00409 000201_GCAT 362976 17185 637000129 3132 2610 1 1 NC_008212 NCBI, Integr8 Max Planck Institute BMC Genomics 7, 169 July 24, 2006 Bolhuis H h.bolhuis@rug.nl Bacteria Spirochaetes Spirochaetales Spirochaetaceae Borrelia Borrelia afzelii BACTERIAL Borrelia afzelii PKo Genome SPIROCHAETES Complete complete Motile, Pathogen, Spiral-shaped, Aerobe, Microaerophilic, Nonsporulating, Mesophile Medical, Human Pathogen Lyme disease, Acrodermatitis chronica atrophicans Host Skin lesion from a Lyme disease patient in Europe in 1993 Germany 28.3 Public Gc00408 000202_GCAT 390236 17057 639633011 905 856 1 8 NC_008277 NCBI Fritz Lipmann Institute Unpublished August 2, 2006 Bacteria Actinobacteria Actinomycetales Nocardiaceae Rhodococcus Rhodococcus sp. RHA1 BACTERIAL Rhodococcus sp RHA1 Genome ACTINOBACTERIA Complete complete PCB degrading, Aerobe, Coccus-shaped, Nonsporulating, Nonmotile, Mesophile Environmental, Ecological None Soil 30 Soil contaminated with gamma-hexachlorocyclohexane in Japan Canada 67.5 Public Gc00407 Gi00996 000203_GCAT 101510 13693 637000234 7804 7211 1 3 NC_008268 NCBI, Genome BC, Genome British Columbia Genome British Columbia Genome BC, Genome Canada PNAS 103, 15582-7 July 31, 2006 Eltis L http://www.microbiology.ubc.ca/leltis/index.htm Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium perfringens BACTERIAL Clostridium perfringens ATCC 13124 7940 Genome FIRMICUTES Complete complete Pathogen, Obligate anaerobe, Sporulating, Motile, Chemoorganotroph, Rod-shaped, Mesophile Medical, Human Pathogen, Biothreat, Animal Pathogen, Poultry Pathogen, Swine Pathogen Gas gangrene, Food poisoning, Enterocolitis, Dysenteria, Enterotoxemia Host, Soil 37 USA 28.4 Public Gc00406 Gi00160 000204_GCAT 195103 304 637000077 3256 2876 1 0 NC_008261 NCBI, ClostriDB TIGR NIH-NIAID Genome Res 16, 1031-40 July 28, 2006 Paulsen I http://www.bio.jhu.edu/Directory/Faculty/Paulsen/Default.html Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium perfringens BACTERIAL Clostridium perfringens SM101 Genome FIRMICUTES Complete complete Pathogen, Anaerobe, Rod-shaped, Sporulating, Mesophile Medical, Biothreat, Animal Pathogen, Poultry Pathogen, Swine Pathogen, Human Pathogen Gas gangrene, Food poisoning, Enterocolitis, Dysenteria, Enterotoxemia Host USA 28 Public Gc00405 Gi00161 000205_GCAT 289380 12521 637000078 2897 2558 1 3 NC_008262 NCBI TIGR Genome Res 16, 1031-40 July 28, 2006 Paulsen I http://www.bio.jhu.edu/Directory/Faculty/Paulsen/Default.html Bacteria Proteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella avium BACTERIAL Bordetella avium 197N 692383 Genome PROTEOBACTERIA-BETA Complete complete Pathogen, Rod-shaped, Motile, Aerobe, Mesophile Medical, Animal Pathogen, Poultry Pathogen Bordetellosis, Coryza, Respiratory infection Host 35 - 37 Spontaneous nalidixic acid-resistant derivative of virulent strain 197 International 61.6 Public Gc00404 Gi00082 000206_GCAT 360910 27 3732 3382 1 0 AM167904 Sanger Institute, Integr8 Sanger Institute, Drew Univ USDA, NSF J Bacteriol 188, 6002-15 February 1, 2006 Temple L ltemple@drew.edu Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O6:K15:H31 UPEC-536 O6:K15:H31 Genome PROTEOBACTERIA-GAMMA Complete complete Facultative, Motile, Pathogen, Rod-shaped, Nonsporulating, Mesophile Medical, Human Pathogen Pyelonephritis, Urinary infection Host, Human intestinal microflora Patient with acute pyelonephritis Germany 50.5 Public Gc00402 Gi00244 000207_GCAT 362663 16235 637000104 4938 4629 1 0 NC_008253 NCBI, Goettingen Genomics Laboratory Univ of Wuerzburg, Goettingen Genomics Laboratory PNAS 103, 12879-84 July 13, 2006 Bruggemann H hbruegg@g2l.bio.uni-goettingen.de Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis tularensis FSC 198 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Rod-shaped, Nonmotile, Aerobe, Mesophile Medical, Biothreat, Human Pathogen, Animal Pathogen Pneumonia, Septicemia Host, Aquatic Slovakia from a mite United Kingdom 32.3 Public Gc00401 Gi01182 000208_GCAT 393115 17375 637000113 1892 1804 1 0 NC_008245 NCBI Univ of Birmingham UK Department of Health PLoS ONE 2, e352 July 12, 2006 Pallen M m.pallen@bham.ac.uk Bacteria Bacteroidetes Sphingobacteriales Flexibacteraceae Cytophaga Cytophaga hutchinsonii BACTERIAL Cytophaga hutchinsonii ATCC 33406 109271 ATCC 33406 Genome BACTEROIDETES Complete complete Cellulolytic, Aerobe, Rod-shaped, Motile, Chitin degradation, Mesophile Biotechnological None Soil, Aquatic 30 USA 39 Public Gc00400 Gi00185 000209_GCAT 269798 54 637000087 4433 3785 1 0 NC_008255 NCBI, Joint Genome Institute Joint Genome Institute, Univ of Wisconsin Milwaukee DOE Unpublished July 12, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. BNC1 BACTERIAL Mesorhizobium sp. BNC1 Genome PROTEOBACTERIA-ALPHA Complete complete Nitrogen fixation, EDTA degrading, Rod-shaped, Motile, Aerobe, Mesophile Biotechnological None Mixed-culture enriched from sewage using the chelating agent EDTA USA 61.1 Public Gc00399 Gi00353 000210_GCAT 266779 10690 637000160 4412 4064 1 3 NC_008254 NCBI, Joint Genome Institute Joint Genome Institute, PNNL DOE Unpublished July 11, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Cyanobacteria Oscillatoriales unclassified Trichodesmium Trichodesmium erythraeum BACTERIAL Trichodesmium erythraeum IMS101 527924 Genome CYANOBACTERIA Complete complete Nitrogen fixation, Motile, Aerobe, Filament-shaped, Mesophile Biotechnological, Environmental None Marine USA 34.3 Public Gc00398 Gi00666 000211_GCAT 203124 318 637000329 7750 4451 1 0 NC_008312 NCBI, Joint Genome Institute Joint Genome Institute, Woods Hole Oceanographic Institute DOE Unpublished July 6, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter acinonychis BACTERIAL Helicobacter acinonychis Sheeba Genome PROTEOBACTERIA-EPSILON Complete complete Spiral-shaped, Aerobe, Motile, Pathogen, Mesophile Medical, Animal Pathogen, Feline Pathogen Gastric lesions Host 37 USA 38.2 Public Gc00403 000212_GCAT 382638 17251 637000130 1553 1612 1 1 NC_008229 NCBI Penn State Univ Unpublished June 28, 2006 Schuster SC scs@bx.psu.edu Bacteria Proteobacteria Rhodospirillales Rhodospirillaceae Rhodospirillum Rhodospirillum rubrum BACTERIAL Rhodospirillum rubrum ATCC 11170 53733 ATCC 11170 Genome PROTEOBACTERIA-ALPHA Complete complete Phototroph, Nitrogen fixation, Motile, Spiral-shaped, Facultative, Mesophile, Lithotroph Biotechnological None 25 - 30 USA 65.4 Public Gc00396 Gi00724 000213_GCAT 269796 58 637000241 4352 3791 1 1 NC_007643 NCBI, Joint Genome Institute Joint Genome Institute, Univ of Wisconsin DOE Unpublished February 9, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Thermoanaerobacteriales Thermoanaerobacteriaceae Moorella Moorella thermoacetica BACTERIAL Moorella thermoacetica ATCC39073 111654 ATCC 39073 Genome FIRMICUTES Complete complete Acetogen, Carbon dioxide fixation, Sporulating, Anaerobe, Thermophile Biotechnological, Environmental None Aquatic, Ponds 58 Bottom of stagnant ponds USA 55.8 Public Gc00397 Gi00376 000214_GCAT 264732 10648 637000167 2628 2465 1 0 NC_007644 NCBI, Joint Genome Institute Joint Genome Institute, Univ of Nebraska DOE Unpublished February 23, 2006 Ragsdale S sragsdale1@unl.edu Bacteria Proteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas atlantica BACTERIAL Pseudoalteromonas atlantica T6c ABI 9.6x 493548 ATCC BAA-1087 Genome PROTEOBACTERIA-GAMMA Complete complete Rod-shaped, Motile, Aerobe, Mesophile Environmental, Bioremediation None Aquatic Lesions on crabs with shell disease USA 44 Public Gc00395 Gi00952 000215_GCAT 342610 13454 637000216 5187 4281 1 0 NC_008228 NCBI Joint Genome Institute DOE Unpublished June 14, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus delbrueckii BACTERIAL Lactobacillus delbrueckii bulgaricus ATCC11842 13536 ATCC11842 Genome FIRMICUTES Complete complete Probiotic, Rod-shaped, Facultative, Nonmotile, Mesophile Food industry, Biotechnological, Lactic acid production None Intestinal microflora Bulgarian yogurt in 1919 France 49.7 Public Gc00394 Gi00312 000216_GCAT 390333 16871 637000139 1864 1562 1 0 NC_008054 NCBI, Genoscope INRA, Genoscope Danone Vitapole PNAS 103, 9274-9 June 14, 2006 van de Guchte M maarten.vandeguchte@jouy.inra.fr Bacteria Actinobacteria Rubrobacterales Rubrobacteraceae Rubrobacter Rubrobacter xylanophilus BACTERIAL Rubrobacter xylanophilus DSM 9941 154720 DSM 9941 Genome ACTINOBACTERIA Complete complete Thermophile, Radiation resistant, Rod-shaped, Nonmotile, Aerobe, Nonsporulating, Heterotroph Biotechnological None Soil 60 Thermally polluted industrial runoff in the United Kingdom USA 70.4 Public Gc00393 Gi00518 000217_GCAT 266117 10670 637000248 3225 3140 1 0 NC_008148 NCBI, Joint Genome Institute Joint Genome Institute, Louisiana State Univ DOE Unpublished June 9, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium sp. MCS BACTERIAL Mycobacterium sp MCS ABI 11x Genome ACTINOBACTERIA Complete complete Rod-shaped, Nonmotile, Nonsporulating, Aerobe, PAH-degrading, Mesophile Biotechnological None Soil, Creosote-contaminated soil Creosote-contaminated soil from the Champion International Superfund site in Libby Montana USA 68 Public Gc00392 Gi01023 000218_GCAT 164756 15762 637000171 5705 5391 1 1 NC_008146 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished June 9, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus BACTERIAL Myxococcus xanthus DK 1622 Genome PROTEOBACTERIA-DELTA Complete complete Obligate aerobe, Motile, Chemoorganotroph, Rod-shaped, Sporulating, Mesophile Biotechnological None Soil 20 - 30 USA 68.9 Public Gc00391 Gi00395 000219_GCAT 246197 1421 637000186 9139 7331 1 0 NC_008095 NCBI TIGR, Monsanto NSF Unpublished June 7, 2006 Nierman WC wnierman@tigr.org Bacteria Proteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPAG1 Genome PROTEOBACTERIA-EPSILON Complete complete Pathogen, Motile, Aerobe, Spiral-shaped, Mesophile Medical, Human Pathogen Ulcer, Gastric inflammation Host, Human stomach 37 Swedish patient with chronic atrophic gastritis Sweden 39 Public Gc00390 000220_GCAT 357544 16183 637000133 1596 1536 1 1 NC_008086 NCBI Washington Univ PNAS 103, 9999-10004 June 6, 2006 Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cenocepacia BACTERIAL Burkholderia cenocepacia AU 1054 ABI Genome PROTEOBACTERIA-BETA Complete complete Pathogen, Motile, Facultative, Rod-shaped, Mesophile Medical, Human Pathogen Pneumonia Host Blood of a patient with CF USA 67 Public Gc00389 Gi00805 000221_GCAT 331271 13919 637000046 7278 6477 3 0 NC_008060, NC_008061, NC_008062 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished June 1, 2006 Richardson P pmrichardson@lbl.gov Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Antiqua Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Aerobe, Motile, Rod-shaped, Mesophile Medical, Human Pathogen, Animal Pathogen, Biothreat Bubonic and Pneumonic plague Host Soil sample from the Republic of Congo USA 47.7 Public Gc00388 000222_GCAT 360102 16645 637000350 4720 4167 1 3 NC_008150 NCBI, Joint Genome Institute Joint Genome Institute J. Bacteriology 188, 4453-63 June 1, 2006 Andersen GL GLAndersen@lbl.gov Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Nepal516 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Aerobe, Motile, Rod-shaped, Mesophile Medical, Human Pathogen, Animal Pathogen, Biothreat Bubonic and Pneumonic plague Host Soil sample from Nepal USA 47 Public Gc00387 000223_GCAT 377628 16646 637000353 4534 3981 1 2 NC_008149 NCBI Joint Genome Institute J. Bacteriology 188, 4453-63 June 1, 2006 Andersen GL GLAndersen@lbl.gov Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Silicibacter Silicibacter sp. TM1040 BACTERIAL Silicibacter (Roseobacter) sp. TM1040 Genome PROTEOBACTERIA-ALPHA Complete complete Carbon fixation, Rod-shaped, Motile, Aerobe, Phototroph, Mesophile Biotechnological, Environmental None Marine USA 60.4 Public Gc00386 Gi00515 000224_GCAT 292414 13040 637000268 3200 3030 1 2 NC_008044 NCBI, Joint Genome Institute, RoseoBase Joint Genome Institute, Univ of Georgia DOE Unpublished May 22, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum BACTERIAL Rhizobium leguminosarum 3841 viciae Legume Plants Genome PROTEOBACTERIA-ALPHA Complete complete Nitrogen fixation, Motile, Aerobe, Rod-shaped, Non-Pathogen, Mesophile Biotechnological, Agricultural None Host, Root nodule 25 - 30 United Kingdom 63 Public Gc00385 Gi00504 000225_GCAT 216596 344 639633055 5057 4700 1 6 NC_008380 NCBI, Sanger Institute, Univ of York Sanger Institute, Univ of York, Univ of East Anglia BBSRC Genome Biol. 7, R34 April 26, 2006 Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Sphingomonadales Sphingomonadaceae Sphingopyxis Sphingopyxis alaskensis BACTERIAL Sphingopyxis alaskensis RB2256 66673 CCUG 45028, CIP 106977, DSM 13593, LMG 18877 Genome PROTEOBACTERIA-ALPHA Complete complete Oligotroph, Ultramicro size, Heterotroph, Aerobe, Mesophile Biotechnological, Environmental None Marine Resurrection Bay in the Gulf of Alaska USA 65 Public Gc00384 Gi00564 000226_GCAT 317655 13907 637000271 3345 3165 1 1 NC_008048 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished May 18, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas entomophila BACTERIAL Pseudomonas entomophila L48 Genome PROTEOBACTERIA-GAMMA Complete complete Aerobe, Motile, Rod-shaped, Mesophile, Heterotroph Agricultural, Insect Pathogen Cellular destruction Aquatic, Wastewater France 64.2 Public Gc00383 Gi00823 000227_GCAT 384676 16800 637000219 5888 5134 1 0 NC_008027 NCBI, Genoscope CNRS, Genoscope CNRG Nat Biotechnol 24, 673-9 May 11, 2006 Boccard F http://www.cgm.cnrs-gif.fr/coli/ Bacteria Proteobacteria Desulfovibrionales Desulfovibrionaceae Lawsonia Lawsonia intracellularis BACTERIAL Lawsonia intracellularis PHE/MN1-00 681612 NCTC 12657 Genome PROTEOBACTERIA-DELTA Complete complete Pathogen, Obligate intracellular, Rod-shaped, Facultative, Mesophile Medical, Animal Pathogen Proliferative enteropathy Intestinal microflora, Host 37 USA 33 Public Gc00382 Gi00321 000228_GCAT 363253 183 637000145 1457 1185 1 3 NC_008011 NCBI, Univ of Minnesota Univ of Minnesota USDA Unpublished May 4, 2006 Kapur V http://www.cvm.umn.edu/departments/vpb/faculty/kapur.htm Bacteria Deinococcus-Thermus Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis BACTERIAL Deinococcus geothermalis DSM11300 150388 DSM11300 Genome THERMI Complete complete Radiation resistant, Thermophile, Coccus-shaped, Aerobe, Mesophile Bioremediation, Environmental None Aquatic, Hot spring 47 Hot spring at Agnano in Naples Italy USA 66 Public Gc00381 Gi00191 000229_GCAT 319795 13423 637000091 2467 2335 1 1 NC_008025 NCBI, Joint Genome Institute Joint Genome Institute, Uniformed Services Univ of the Health Sciences DOE PLoS ONE 2, e955 May 4, 2006 Daly MJ mdaly@usuhs.mil Bacteria Acidobacteria Acidobacteriales Acidobacteriaceae unclassified Acidobacteria bacterium Ellin345 BACTERIAL Acidobacterium sp. Ellin 345 ABI 9x Genome ACIDOBACTERIA Complete complete Acidophile, Chemoorganotroph, Aerobe, Heterotroph, Nonmotile, Rod-shaped, Nonsporulating, Mesophile, Oligotroph Bioremediation, Environmental, Biotechnological None Soil, Aquatic USA 58.4 Public Gc00380 Gi01488 000230_GCAT 204669 15771 637000001 5650 4777 1 0 NC_008009 NCBI Joint Genome Institute DOE Unpublished May 4, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes MGAS9429 M12 692592 Genome FIRMICUTES Complete complete Pathogen, Facultative, Coccus-shaped, Nonsporulating, Nonmotile, Mesophile Medical, Human Pathogen Rheumatic fever Host, Nasopharyngeal microflora USA 38 Public Gc00379 Gi01506 000231_GCAT 370551 16363 637000300 1836 1877 1 0 NC_008021 NCBI RML-NIAID, Integrated Genomics Inc NIH PNAS 103, 7059-64 May 4, 2006 Musser JM http://www.niaid.nih.gov/dir/labs/lhbp/musser.htm Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes MGAS10270 692416 Genome FIRMICUTES Complete complete Pathogen, Facultative, Coccus-shaped, Nonsporulating, Nonmotile, Mesophile Medical, Human Pathogen Rheumatic fever Host, Nasopharyngeal microflora USA 38 Public Gc00378 Gi01502 000232_GCAT 370552 16364 637000292 1928 1987 1 0 NC_008023 NCBI RML-NIAID, Integrated Genomics Inc NIH PNAS 103, 7059-64 May 4, 2006 Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes MGAS2096 M12 692421 Genome FIRMICUTES Complete complete Pathogen, Facultative, Coccus-shaped, Nonsporulating, Nonmotile, Mesophile Medical, Human Pathogen Rheumatic fever Host, Nasopharyngeal microflora USA 38 Public Gc00377 Gi01504 000233_GCAT 370553 16365 637000295 1860 1898 1 0 NC_008023 NCBI RML-NIAID, Integrated Genomics Inc NIH PNAS 103, 7059-64 May 4, 2006 Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes MGAS10750 692424 Genome FIRMICUTES Complete complete Pathogen, Facultative, Coccus-shaped, Nonsporulating, Nonmotile, Mesophile Medical, Human Pathogen Rheumatic fever Host, Nasopharyngeal microflora USA 38 Public Gc00376 Gi01503 000234_GCAT 370554 16366 637000294 1937 1979 1 0 NC_008024 NCBI RML-NIAID, Integrated Genomics Inc NIH PNAS 103, 7059-64 May 4, 2006 Bacteria Proteobacteria unclassified unclassified unclassified Candidatus Baumannia cicadellinicola BACTERIAL Baumannia cicadellinicola Hc Homalodisca coagulata Genome PROTEOBACTERIA-GAMMA Complete complete Endosymbiont, Insect endosymbiont, Mesophile Biotechnological None Host Red portion of the bacteriome from Homalodisca coagulata adults collected in a lemon orchard USA 33.2 Public Gc00375 Gi00076 000235_GCAT 374463 12513 637000029 686 595 1 0 NC_007984 NCBI TIGR PLoS Biology 4, e188 April 27, 2006 Eisen J jaeisen@ucdavis.edu Bacteria Proteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus metallidurans BACTERIAL Ralstonia (Cupriavidus) metallidurans CH34 124760 Genome PROTEOBACTERIA-BETA Complete complete Rod-shaped, Aerobe, Metal resistant, Motile, Mesophile Bioremediation, Environmental None Soil, Aquatic 30 USA 63 Public Gc00374 Gi00501 000236_GCAT 266264 250 637000230 6508 5914 2 2 NC_007973, NC_007974 NCBI, BNL, Joint Genome Institute Joint Genome Institute, Brookhaven Natl Lab DOE Unpublished April 27, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Pseudomonadales Moraxellaceae Psychrobacter Psychrobacter cryohalolentis BACTERIAL Psychrobacter cryohalolentis (cryopegella) K5 ABI 11x 690313 Genome PROTEOBACTERIA-GAMMA Complete complete Psychrophile, Radiation resistant, Nonmotile, Rod-shaped, Aerobe, Halotolerant Biotechnological None Aquatic Saline liquid found 11-24 m below the surface within a forty thousand-year-old Siberian permafrost at the Kolyma-Indigirka lowland in Siberia USA 42.3 Public Gc00373 Gi00809 000237_GCAT 335284 13920 637000227 3059 2467 1 1 NC_007969 NCBI, Joint Genome Institute Joint Genome Institute, Michigan State Univ DOE Unpublished April 18, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Bradyrhizobiaceae Nitrobacter Nitrobacter hamburgensis BACTERIAL Nitrobacter hamburgensis X14 303234 Genome PROTEOBACTERIA-ALPHA Complete complete Nitrifying, Lithoautotroph, Motile, Rod-shaped, Aerobe, Mesophile Biotechnological None Soil Soil USA 61 Public Gc00372 Gi00405 000238_GCAT 323097 13473 637000192 4406 3804 1 3 NC_007964 NCBI, Joint Genome Institute Joint Genome Institute, Oregon State Univ DOE Unpublished April 11, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Oceanospirillales Halomonadaceae Chromohalobacter Chromohalobacter salexigens BACTERIAL Chromohalobacter (Halomonas) salexigens (elongata) 1H11, DSM 3043 ABI 12x 158279 DSM 3043 Genome PROTEOBACTERIA-GAMMA Complete complete Halophile, Rod-shaped, Motile, Facultative, Nonsporulating, Mesophile Environmental, Bioremediation, Biotechnological None Aquatic, Solar saltern 37 Solar salt facility, Netherlands Antilles USA 63 Public Gc00371 Gi00151 000239_GCAT 290398 12636 637000075 3696 3298 1 0 NC_007963 NCBI, Joint Genome Institute Joint Genome Institute, Purdue Univ, Hiram College DOE Unpublished April 11, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Bradyrhizobiaceae Rhodopseudomonas Rhodopseudomonas palustris BACTERIAL Rhodopseudomonas palustris BisB5 ABI 11x Genome PROTEOBACTERIA-ALPHA Complete complete Carbon dioxide fixation, Rod-shaped, Motile, Facultative, Phototroph, Nitrogen fixation, Hydrogen production, Pollutant degrader, Mesophile Biotechnological, Hydrogen production, Energy production None Aquatic, Soil 25 - 30 Dutch contaminated site USA 64 Public Gc00370 Gi00958 000240_GCAT 316057 15749 637000238 4892 4397 1 0 NC_007958 NCBI, Joint Genome Institute Joint Genome Institute, Univ of Washington DOE Unpublished April 10, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella denitrificans BACTERIAL Shewanella denitrificans OS217 ABI 15x 303781 DSM 15013, LMG 21692 Genome PROTEOBACTERIA-GAMMA Complete complete Facultative, Denitrifying, Rod-shaped, Motile, Mesophile Biotechnological None Marine 20 - 25 Gotland Deep an anoxic basin in the central Baltic Sea in 1986 from a depth of 120-130m USA 45.1 Public Gc00369 Gi00552 000241_GCAT 318161 13390 637000256 4545 3754 1 0 NC_007954 NCBI, Joint Genome Institute Joint Genome Institute, PNNL DOE Unpublished April 10, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Comamonadaceae Polaromonas Polaromonas sp. JS666 BACTERIAL Polaromonas sp. JS666 ABI 12x 352284 ATCC BAA-500 Genome PROTEOBACTERIA-BETA Complete complete Aerobe, Nonmotile, Rod-shaped, Mesophile Bioremediation, Environmental None Aquatic 20 Sediment contaminated with cis-dichloroethane USA 62.5 Public Gc00368 Gi00710 000242_GCAT 296591 13121 637000208 5200 4817 1 2 NC_007948 NCBI, Joint Genome Institute Joint Genome Institute, Cornell Univ DOE Unpublished April 10, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Methylophilales Methylophilaceae Methylobacillus Methylobacillus flagellatus BACTERIAL Methylobacillus flagellatus KT ABI 14x 302997 Genome PROTEOBACTERIA-BETA Complete complete Rod-shaped, Motile, Aerobe, Mesophile Bioremediation, Energy production, Biotechnological, Wastewater treatment, Environmental None Sludge 30 - 42 Activated sludge found at the wastewater treatment plant in Moscow Russia USA 55.8 Public Gc00367 Gi00368 000243_GCAT 265072 10647 637000165 2971 2753 1 0 NC_007947 NCBI, Joint Genome Institute Joint Genome Institute, Univ of Washington DOE J Bacteriology 189, 4020-7 April 10, 2006 Richardson P microbes@cuba.jgi-psf.org Archaea Euryarchaeota Methanosarcinales Methanosarcinaceae Methanococcoides Methanococcoides burtonii ARCHAEAL Methanococcoides burtonii DSM6242 ABI 19x 159855 DSM 6242 Genome EURYARCHAEOTA-METHANOMICROBIA Complete complete Methanogen, Psychrophile, Carbon cycle, Nonsporulating, Motile, Anaerobe, Lithotroph Biotechnological, Energy production None Aquatic, Antarctic 1.7 - 29.5 Anoxic hypolimnion of Ace Lake Antarctica USA 40.8 Public Gc00366 Gi00354 000244_GCAT 259564 9634 637000161 2575 2273 1 0 NC_007955 NCBI, Integr8, Joint Genome Institute Joint Genome Institute, UMBI DOE Unpublished April 10, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia xenovorans BACTERIAL Burkholderia xenovorans (fungorum) LB400 374301 NRRL B-18064 Genome PROTEOBACTERIA-BETA Complete complete Rod-shaped, PCB degrading, Nonsporulating, Motile, Aerobe, Mesophile Bioremediation, Environmental, Medical, Human Pathogen, Plant Pathogen, Agricultural Opportunistic infection Soil 30 PCB-containing landfill near in upper New York USA 62 Public Gc00365 Gi00107 000245_GCAT 266265 254 637000053 9279 8702 3 0 NC_007952 NCBI, Joint Genome Institute Joint Genome Institute, Michigan State Univ DOE PNAS 103, 15280-7 April 10, 2006 Aerts A alaerts@lbl.gov Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli UTI89 ABI 8x Genome PROTEOBACTERIA-GAMMA Complete complete Facultative, Motile, Pathogen, Rod-shaped, Nonsporulating, Mesophile Medical, Human Pathogen, HGMI Diarrhea, Cystitis Host, Human intestinal microflora Woman with uncomplicated cystitis USA 50 Public Gc00364 000246_GCAT 364106 16259 637000109 5065 5044 1 1 NC_007946 NCBI Washington Univ PNAS 103, 5977-82 April 5, 2006 Bacteria Proteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia bellii BACTERIAL Rickettsia bellii RML369-C 303683 Dermacentor variabilis Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Aerobe, Nonmotile, Nonsporulating, Obligate parasite, Endosymbiont, Insect endosymbiont, Mesophile Agricultural None Host Embryonated chicken eggs from a triturated pool of unfed adult Dermacentor variabilis ticks collected from vegetation near Fayetteville Arkansas USA in 1966 France 31.6 Public Gc00363 Gi01127 000247_GCAT 336407 13996 637000242 1522 1469 1 0 NC_007940 NCBI CNRS CNRG PLoS Genetics 2, e76 April 5, 2006 Raoult D didier.raoult@medecine.univ-mrs.fr Bacteria Firmicutes Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus salivarius BACTERIAL Lactobacillus salivarius salivarius UCC118 Genome FIRMICUTES Complete complete Facultative, Nonmotile, Non-Pathogen, Rod-shaped, Nonsporulating, Bacteriocins producer, Mesophile Food industry, Biotechnological None Host, Intestinal microflora Human gastrointestinal tract Ireland 32 Public Gc00362 Gi01470 000248_GCAT 362948 13280 637000143 1827 1717 1 3 NC_007929 NCBI Univ College Cork PNAS 103, 6718-23 April 3, 2006 Bacteria Proteobacteria Rhizobiales Bradyrhizobiaceae Rhodopseudomonas Rhodopseudomonas palustris BACTERIAL Rhodopseudomonas palustris BisB18 ABI 10x Genome PROTEOBACTERIA-ALPHA Complete complete Carbon dioxide fixation, Rod-shaped, Motile, Facultative, Phototroph, Nitrogen fixation, Hydrogen production, Pollutant degrader, Mesophile Biotechnological, Hydrogen production None Aquatic, Soil 25 - 30 Dutch site USA 64 Public Gc00361 Gi00960 000249_GCAT 316056 15750 637000237 5513 4886 1 0 NC_007925 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished March 21, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Alteromonadales Alteromonadaceae Saccharophagus Saccharophagus degradans BACTERIAL Saccharophagus (Microbulbifer) degradans 2-40 620898 Genome PROTEOBACTERIA-GAMMA Complete complete Cellulolytic, Rod-shaped, Motile, Aerobe, Mesophile, Psychrotolerant Energy production, Biotechnological, Bioremediation, Environmental None Aquatic 4 - 37 Decaying Spartina alterniflora a salt marsh cord grass in the Chesapeake Bay USA 45 Public Gc00360 Gi00373 000250_GCAT 203122 316 637000249 5057 4008 1 0 NC_007912 NCBI, Joint Genome Institute Joint Genome Institute, Univ of Maryland DOE Unpublished March 17, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Comamonadaceae Rhodoferax Rhodoferax ferrireducens BACTERIAL Rhodoferax ferrireducens T118 ABI 9x 303665 DSM 15236, ATCC BAA-621 Genome PROTEOBACTERIA-ALPHA Complete complete Psychrotolerant, Anaerobe, Iron reducer, Rod-shaped, Mesophile Biotechnological, Generates electricity None 25 Aquifer sediment collected at a depth of 18 feet USA 59.9 Public Gc00359 Gi01084 000251_GCAT 338969 13908 637000235 4712 4170 1 1 NC_007908 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished March 10, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Peptococcaceae Desulfitobacterium Desulfitobacterium hafniense BACTERIAL Desulfitobacterium hafniense Y51 Genome FIRMICUTES Complete complete Dehalogenation, Motile, Rod-shaped, Anaerobe, Sporulating, Mesophile Biotechnological, Bioremediation None Soil Soil contaminated with tetrachloroethene in Japan Japan 47.4 Public Gc00358 Gi00193 000252_GCAT 138119 16639 637000093 5727 5060 1 0 NC_007907 NCBI RITE, Kyushu Univ J Bacteriol 188, 2262-74 March 10, 2006 Yukawa H mmg-lab@rite.or.jp Bacteria Chlamydiae Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila felis BACTERIAL Chlamydophila felis Fe/C-56 Genome CHLAMYDIAE Complete complete Pathogen, Rod-shaped, Mesophile Medical, Animal Pathogen, Feline Pathogen Pharyngitis, Bronchitis, Pneumonia, Rhinitis, Respiratory infection Host 37 Japan 39 Public Gc00357 Gi00142 000253_GCAT 264202 370 637000067 1166 1005 1 1 NC_007899 NCBI Yamaguchi Univ, Kitasato Univ JSPS DNA Res 13, 15-23 March 10, 2006 Hattori M hattori@genome.ls.kitasato-u.ac.jp Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis LVS Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Nonmotile, Aerobe, Rod-shaped, Mesophile Medical, Human Pathogen, Biothreat Tularemia Host, Aquatic Live vaccine strain was created in the 1960's in the USA USA 32.2 Public Gc00356 Gi00254 000254_GCAT 376619 16421 637000111 1895 1754 1 0 NC_007880 NCBI, LLNL Lawrence Livermore National Lab, CDC Unpublished March 3, 2006 Garcia E garcia12@llnl.gov Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12- W3110 120208 Genome PROTEOBACTERIA-GAMMA Complete complete Facultative, Motile, Rod-shaped, Non-Pathogen, Nonsporulating, Mesophile Medical None Host, Human intestinal microflora 37 Japan 50.8 Public Gc00355 Gi00241 000255_GCAT 316407 16351 637000110 4646 4227 1 0 AC_000091 NCBI, NARA NARA Unpublished March 1, 2006 Mori H hmori@gtc.aist-nara.ac.jp Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Jannaschia Jannaschia sp. CCS1 BACTERIAL Jannaschia sp. CCS1 Genome PROTEOBACTERIA-ALPHA Complete complete Nonmotile, Obligate aerobe, Heterotroph, Rod-shaped, Phototroph, Nonsporulating, Mesophile Biotechnological None Marine 30 Water sample taken from the North Sea USA 62 Public Gc00354 Gi00785 000256_GCAT 290400 12733 637000137 4317 4212 1 1 NC_007802 NCBI, Joint Genome Institute, RoseoBase Joint Genome Institute DOE Unpublished March 1, 2006 Richardson P microbes@cuba.jgi-psf.org Archaea Euryarchaeota Methanomicrobiales Methanospirillaceae Methanospirillum Methanospirillum hungatei ARCHAEAL Methanospirillum hungateii JF-1 ABI 12x 157033 DSM 864 Genome EURYARCHAEOTA-METHANOMICROBIA Complete complete Methanogen, Carbon cycle, Nonsporulating, Motile, Anaerobe, Mesophile, Lithotroph Biotechnological, Energy production None Mud 37 Sewage sludge USA 45.1 Public Gc00350 Gi00366 000257_GCAT 323259 13015 637000164 3544 3139 1 0 NC_007796 NCBI, Integr8, Joint Genome Institute Joint Genome Institute DOE Unpublished February 21, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rickettsiales Anaplasmataceae Neorickettsia Neorickettsia sennetsu BACTERIAL Neorickettsia (Ehrlichia) sennetsu Miyayama 621312 Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Intracellular pathogen, Mesophile Medical, Human Pathogen Sennetsu fever Host 1953 in Japan causing Sennetsu fever USA 41.1 Public Gc00352 Gi00403 000258_GCAT 222891 357 637000191 859 932 1 0 NC_007798 NCBI, Ohio State Univ Ohio State Univ, TIGR NIH-NIAID, Ohio State Univ PLoS Genetics 2, E21 February 21, 2006 Rikihisa Y rikihisa.1@osu.edu Bacteria Proteobacteria Rickettsiales Anaplasmataceae Anaplasma Anaplasma phagocytophilum BACTERIAL Anaplasma (Ehrlichia sp. 'HGE agent') phagocytophilum HZ Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Aerobe, Obligate intracellular parasite, Coccus-shaped, Mesophile Medical, Human Pathogen, Animal Pathogen, Cattle Pathogen Anaplasmosis Host 37 Patient in New York in 1995 USA 41.6 Public Gc00351 Gi00029 000259_GCAT 212042 336 637000009 1471 1264 1 0 NC_007797 NCBI, Ohio State Univ Ohio State Univ, TIGR NIH PLoS Genetics 2, E21 February 21, 2006 Rikihisa Y rikihisa.1@osu.edu Bacteria Proteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia chaffeensis BACTERIAL Ehrlichia chaffeensis Arkansas 302444 Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Obligate intracellular parasite, Rod-shaped, Mesophile Medical, Human Pathogen Ehrlichiosis, Human monocytic ehrlichiosis Host Patient on an army base in Arkansas in 1990 USA 30.1 Public Gc00353 Gi00214 000260_GCAT 205920 325 637000098 1176 1105 1 0 NC_007799 Microgen, NCBI Ohio State Univ, TIGR NIH-NIAID PLoS Genetics 2, E21 February 21, 2006 Rikihisa Y rikihisa.1@osu.edu Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus NCTC 8325 71249 NCTC 8325 Genome FIRMICUTES Complete complete Pathogen, Facultative, Coccus-shaped, Nonsporulating, Nonmotile, Mesophile Medical, Human Pathogen, Animal Pathogen, Cattle Pathogen, Poultry Pathogen Toxic-shock syndrome, Staphylococcal scarlet fever Host 30 - 37 USA 32.9 Public Gc00349 Gi00596 000261_GCAT 93061 237 637000279 2969 2892 1 0 NC_007795 NCBI, Univ of Oklahoma, Microgen Univ of Oklahoma NIH-NIAID, MGRI ASM Press in press February 18, 2006 Iandolo JJ john-iandolo@ouhsc.edu Bacteria Proteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium aromaticivorans BACTERIAL Novosphingobium (Sphingomonas) aromaticivorans DSM 12444 (F199) 44778 DSM 12444 Genome PROTEOBACTERIA-ALPHA Complete complete Obligate aerobe, Rod-shaped, Motile, Degrades aromatic hydrocarbons, Mesophile Biotechnological, Medical, Animal Pathogen, Human Pathogen Death of coral reefs Aquatic, Soil, Host 410m depth from a borehole sample that was drilled at the Savannah River Site in South Carolina USA 65.2 Public Gc00348 Gi00562 000262_GCAT 279238 204 640427126 3561 3324 1 2 NC_007794 NCBI, Joint Genome Institute Joint Genome Institute, PNNL DOE Unpublished February 10, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus MRSA USA300, FPR3757 Genome FIRMICUTES Complete complete Coccus-shaped, Nonsporulating, Nonmotile, Facultative, Pathogen, Meticillin resistant, Mesophile Medical, Human Pathogen Septicemia, Pneumonia Host 30 - 37 USA 32.8 Public Gc00347 000263_GCAT 367830 16313 637000280 2872 2560 1 3 NC_007793 NCBI UCSF Lancet 367, 731-9 February 10, 2006 Diep BA bdiep@epi-center.ucsf.edu Bacteria Proteobacteria Rhizobiales Bradyrhizobiaceae Rhodopseudomonas Rhodopseudomonas palustris BACTERIAL Rhodopseudomonas palustris HaA2 ABI 11x Genome PROTEOBACTERIA-ALPHA Complete complete Carbon dioxide fixation, Rod-shaped, Motile, Facultative, Phototroph, Nitrogen fixation, Hydrogen production, Pollutant degrader, Mesophile Biotechnological, Hydrogen production None Aquatic, Soil 25 - 30 Haren USA 66 Public Gc00346 Gi00959 000264_GCAT 316058 15747 637000240 5331 4683 1 0 NC_007778 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished February 9, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Frankiaceae Frankia Frankia sp. CcI3 BACTERIAL Frankia sp CcI3 ABI 13x HFP020203, HFPCcI3 Casuarina cunninghamiana Genome ACTINOBACTERIA Complete complete Aerobe, Chemoorganotroph, Nitrogen fixation, Non-Pathogen, Plant symbiont, Nonmotile, Sporulating, Mesophile Biotechnological, Agricultural None Soil Root nodules of Casuarina cunninghamiana in 1983 at Harvard Forest USA 70.1 Public Gc00345 Gi00258 000265_GCAT 106370 13963 637000116 5433 4499 1 0 NC_007777 NCBI, FrankiaGenomes, Joint Genome Institute Joint Genome Institute, Univ of Connecticut, LBNL, Univ of New Hampshire NSF Genome Res 17, 7-15 February 7, 2006 Benson DR dbenson@uconnvm.uconn.edu Bacteria Cyanobacteria Chroococcales unclassified Synechococcus Synechococcus sp. JA-2-3B'a(2-13) BACTERIAL Synechococcus sp JA-2-3B'a(2-13) Genome CYANOBACTERIA Complete complete Photosynthetic, Ocean carbon cycle, Rod-shaped, Facultative, Thermophile, Photoautotroph Environmental None Aquatic, Hot spring Top 2mm of microbial mat samples from Octopus Spring Yellowstone National Park USA 58.5 Public Gc00344 Gi00935 000266_GCAT 321332 16252 637000312 3046 2862 1 0 NC_007775 NCBI TIGR Unpublished February 6, 2006 Bacteria Cyanobacteria Chroococcales unclassified Synechococcus Synechococcus sp. JA-3-3Ab BACTERIAL Synechococcus sp JA-3-3Ab Genome CYANOBACTERIA Complete complete Photosynthetic, Ocean carbon cycle, Rod-shaped, Facultative, Thermophile, Photoautotroph Environmental None Aquatic, Hot spring Top 2mm of microbial mat samples from Octopus Spring Yellowstone National Park USA 60.2 Public Gc00343 Gi00936 000267_GCAT 321327 16251 637000313 2932 2760 1 0 NC_007776 NCBI TIGR Unpublished February 6, 2006 Bacteria Proteobacteria Rhizobiales Rhizobiaceae Rhizobium Rhizobium etli BACTERIAL Rhizobium etli CFN42 121591 Genome PROTEOBACTERIA-ALPHA Complete complete Aerobe, Nitrogen fixation, Symbiont, Mesophile Biotechnological, Agricultural None Host, Root nodule Mexico 61.3 Public Gc00342 Gi00503 000268_GCAT 347834 13932 640427137 4381 4035 1 6 NC_007761 NCBI, UNAM Univ Nacional Autonoma de Mexico Unpublished February 1, 2006 Brom S sbrom@ccg.unam.mx Bacteria Proteobacteria Syntrophobacterales Syntrophaceae Syntrophus Syntrophus aciditrophicus BACTERIAL Syntrophus aciditrophicus SB 304023 Genome PROTEOBACTERIA-DELTA Complete complete Anaerobe, Global carbon cycle, Syntrophic, Rod-shaped, Nonsporulating, Nonmotile, Mesophile Biotechnological None Sludge 35 Sludge from a sewage treatment plant in Norman Oklahoma USA 51.5 Public Gc00341 Gi00645 000269_GCAT 56780 16258 637000317 3179 3168 1 0 NC_007759 NCBI UCLA, Univ of Oklahoma, Integrated Genomics Inc NSF PNAS 104, 7600-5 January 27, 2006 Gunsalus RP http://www.mimg.ucla.edu/faculty/gunsalus/ Bacteria Proteobacteria Myxococcales Myxococcaceae Anaeromyxobacter Anaeromyxobacter dehalogenans BACTERIAL Anaeromyxobacter dehalogenans 2CP-C ABI 11x 355535 Genome PROTEOBACTERIA-DELTA Complete complete Anaerobe, Motile, Sporulating, Rod-shaped, Mesophile, Heterotroph Environmental, Bioremediation None Soil 30 USA 74.9 Public Gc00340 Gi00026 000270_GCAT 290397 12634 637000007 5013 4346 1 0 NC_007760 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished January 27, 2006 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter litoralis BACTERIAL Erythrobacter litoralis HTCC2594 Genome PROTEOBACTERIA-ALPHA Complete complete Aerobe, Rod-shaped, Motile, Phototroph, Mesophile Environmental, MMI None Marine Sargasso Sea at a depth of 10m USA 63.1 Public Gc00339 Gi00840 000271_GCAT 314225 13480 637000103 3011 3056 1 NC_007722 NCBI, Oregon State Univ, JCVI J Craig Venter Institute, Oregon State Univ Moore Foundation Unpublished January 11, 2006 Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm Eukaryota Ascomycota Eurotiales Trichocomaceae Aspergillus Aspergillus oryzae EUKARYAL Aspergillus oryzae RIB40 491981 Genome FUNGI-ASCOMYCOTA Quality Draft complete Filament-shaped, Mesophile Biotechnological, Protein production, Food industry, Fermentation None Japan Public Gc00338 Gi00043 000272_GCAT 5062 37000 12074 8 0 NITE NITE Nature 438, 1157-61` December 22, 2005 Machida, M m.machida@aist.go.jp Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Sodalis Sodalis glossinidius BACTERIAL Sodalis glossinidius morsitans Glossina sp Genome PROTEOBACTERIA-GAMMA Complete complete Symbiont, Rod-shaped, Nonmotile, Nonsporulating, Microaerophilic, Mesophile Evolutionary None Host 25 USA 54.7 Public Gc00337 000273_GCAT 343509 16309 637000270 4171 2432 1 3 NC_007712 NCBI Kitasato Univ USDA, MEXT Genome Res. 6, 149-56 January 18, 2006 Hattori M hattori@genome.ls.kitasato-u.ac.jp Bacteria Firmicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Aster yellows witches'-broom phytoplasma BACTERIAL Phytoplasma aster yellows witches'-broom AY-WB Genome FIRMICUTES Complete complete Pathogen, Aerobe, Sphere-shaped, Obligate parasite, Mesophile Agricultural, Plant Pathogen Aster yellows, Witches' Broom Host USA 26.9 Public Gc00336 Gi00453 000274_GCAT 322098 13478 637000011 706 671 1 4 NC_007716 NCBI, Ohio State Univ Ohio State Univ, Integrated Genomics Inc USDA J. Bacteriology 188, 3682-3696 January 18, 2006 Hogenhout SA http://iris.biosci.ohio-state.edu/osuent/personnel/hogenhout.html Bacteria Proteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas oryzae BACTERIAL Xanthomonas oryzae MAFF 311018 oryzae 373786 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Rod-shaped, Motile, Aerobe, Mesophile Agricultural, Plant Pathogen Leaf blight, Rice blight Host Japan 63.7 Public Gc00335 Gi00695 000275_GCAT 342109 16297 637000347 4940 4372 1 0 NC_007705 NCBI NIAS, Japan JARQ 39, 275-287 January 9, 2006 Ochiai H ochiaih@nias.affrc.go.jp Archaea Euryarchaeota Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera stadtmanae ARCHAEAL Methanosphaera stadtmanae DSMZ3091 158297 DSM 3091, ATCC 43021 Genome EURYARCHAEOTA-METHANOBACTERIA Complete complete Methanogen, Nonmotile, Anaerobe, Sphere-shaped, Methanol reducer, Mesophile, Lithotroph Energy production, Biotechnological None Host, Intestinal microflora 36 - 40 Human feces Germany 27.6 Public Gc00334 Gi00365 000276_GCAT 339860 15579 637000163 1767 1534 1 0 NC_007681 NCBI, Integr8 Goettingen Genomics Laboratory, Max Planck Institute J Bacteriology 188, 642-58 January 5, 2006 Thauer R http://www.mpi-marburg.mpg.de/thauer/ Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia thailandensis BACTERIAL Burkholderia thailandensis E264 125454 ATCC 700388 Genome PROTEOBACTERIA-BETA Complete complete Non-Pathogen, Rod-shaped, Motile, Aerobe, Mesophile Agricultural None Soil 25 - 42 Rice field sample in Thailand USA 67 Public Gc00333 Gi00111 000277_GCAT 271848 10774 637000052 6723 5645 2 0 NC_007650, NC_007651 NCBI TIGR NIH-NIAID BMC Genomics 6, 174 December 15, 2005 DeShazer D david.deshazer@us.army.mil Bacteria Proteobacteria Oceanospirillales Hahellaceae Hahella Hahella chejuensis BACTERIAL Hahella chejuensis KCTC 2396 278562 KCTC 2396 Genome PROTEOBACTERIA-GAMMA Complete complete Aerobe, Motile, Rod-shaped, Halophile, Heterotroph, Mesophile Biotechnological, Algicidal None Aquatic Marine sediment from Cheju Island, Republic of Korea Korea 53.9 Public Gc00332 Gi00288 000278_GCAT 349521 16064 637000128 7215 6778 1 0 NC_007645 NCBI, GEM KRIBB MOST NAR 33, 7066-7073 December 14, 2005 Kim JF jfk@kribb.re.kr Bacteria Bacteroidetes Sphingobacteriales unclassified Salinibacter Salinibacter ruber BACTERIAL Salinibacter ruber M31 303749 DSM 13855, CECT 5946 Genome BACTEROIDETES Complete complete Halophile, Motile, Aerobe, Rod-shaped, Heterotroph Biotechnological None Ponds 37 - 47 Saltern crystallizer ponds in Spain USA 66.2 Public Gc00331 000279_GCAT 309807 16159 637000250 3551 2801 1 1 NC_007677 NCBI TIGR NSF PNAS 102, 18147-52 December 5, 2005 Nelson KE http://www.tigr.org/~kenelson/ Bacteria Proteobacteria Rhodospirillales Rhodospirillaceae Magnetospirillum Magnetospirillum magneticum BACTERIAL Magnetospirillum magneticum AMB-1 117768 ATCC 700264 Genome PROTEOBACTERIA-ALPHA Complete complete Synthesizes magnetosomes, Spiral-shaped, Motile, Magnetotactic, Mesophile, Aerobe, Heterotroph Biotechnological None Host, Aquatic Pond water in Tokyo Japan USA 65.1 Public Gc00330 000280_GCAT 342108 16217 637000155 4967 4559 1 0 NC_007626 NCBI Tokyo Univ of Agriculture and Technology MEXT DNA Res. 12, 157-66 December 7, 2005 Matsunaga T tmatsuna@cc.tuat.ac.jp Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma capricolum BACTERIAL Mycoplasma capricolum capricolum California kid ATCC 27343 105235 ATCC 27343, NCTC 10154 Genome FIRMICUTES Complete complete Pathogen, Facultative, Nonmotile, Nonsporulating, Sphere-shaped, Mesophile Medical, Animal Pathogen, Goat Pathogen Caprine mycoplasma, Arthritis, Septicemia Host 37 USA 23.8 Public Gc00329 000281_GCAT 340047 16208 637000174 1010 812 1 0 NC_007633 NCBI, CMR J Craig Venter Institute Unpublished December 6, 2005 Glass J jglass@venterstitute.org Bacteria Proteobacteria Campylobacterales Helicobacteraceae Sulfurimonas Sulfurimonas denitrificans BACTERIAL "Thiomicrospira" denitrificans ATCC 33889 109901 ATCC 33889, DSM 1251 Genome PROTEOBACTERIA-EPSILON Complete complete Sulfur oxidizer, Carbon dioxide fixation, Desulfurylates coal, Spiral-shaped, Nonmotile, Anaerobe, Nitrate reducer, Mesophile Biotechnological None Marine, Mud 26 Estuarine mud in Netherlands USA 34.5 Public Gc00328 000282_GCAT 326298 13019 637000326 2201 2097 1 0 NC_007575 NCBI Joint Genome Institute DOE Unpublished November 1, 2005 Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus RF122 bovine Genome FIRMICUTES Complete complete Pathogen, Nonmotile, Facultative, Coccus-shaped, Nonsporulating, Mesophile Medical, Human Pathogen, Animal Pathogen, Cattle Pathogen, Poultry Pathogen Mastitis, Nosocomial infection Host 30 - 37 USA 32.8 Public Gc00327 000283_GCAT 273036 63 637000272 2515 2665 1 0 NC_007622 NCBI, Univ of Minnesota Univ of Minnesota USDA/CSREES Unpublished November 30, 2005 Kapur V http://www.cvm.umn.edu/departments/vpb/faculty/kapur.htm Bacteria Proteobacteria Rhizobiales Brucellaceae Brucella Brucella abortus BACTERIAL Brucella melitensis abortus 2308 Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Aerobe, Nonmotile, Rod-shaped, Mesophile Medical, Human Pathogen, Biothreat, Animal Pathogen Brucellosis Host Standard laboratory strain USA 57 Public Gc00326 000284_GCAT 359391 16203 637000041 3277 3034 2 0 NC_007618, NC_007624 NCBI, LLNL Lawrence Livermore National Lab, Joint Genome Institute, Univ Nacional de San Martin Infect Immunity 73, 8353-61 November 22, 2005 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosospira Nitrosospira multiformis BACTERIAL Nitrosospira multiformis ATCC 25196 103735 ATCC 25196 Genome PROTEOBACTERIA-BETA Complete complete Nitrifying, Ammonia-oxidizer, Autotroph, Aerobe, Motile, Lithotroph, Mesophile Biotechnological None Soil USA 53.9 Public Gc00325 000285_GCAT 323848 13912 637000197 3184 2757 1 3 NC_007614 NCBI, Joint Genome Institute Joint Genome Institute, Oregon State Univ DOE Unpublished November 15, 2005 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Shigella Shigella dysenteriae BACTERIAL Shigella dysenteriae Sd197 1 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Rod-shaped, Motile, Nonsporulating, Facultative, Mesophile Medical, Human Pathogen Dysenteria, Food poisoning Host 37 Epidemic in China in 1950s China 51.2 Public Gc00324 000286_GCAT 300267 13145 640427142 4369 4274 1 2 CP000034 ShiBASE Microbial Genome Center of ChMPH MOST NAR 33, 6445-58 November 7, 2005 Jin Q zdsys@sina.com Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Shigella Shigella sonnei BACTERIAL Shigella sonnei Ss046 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Rod-shaped, Motile, Nonsporulating, Facultative, Mesophile Medical, Human Pathogen Dysenteria, Food poisoning Host 37 Epidemic in China in 1950s China 51 Public Gc00323 000287_GCAT 300269 13151 640427143 5039 4461 1 4 NC_007384 NCBI, ShiBASE Microbial Genome Center of ChMPH MOST NAR 33, 6445-58 November 7, 2005 Jin Q zdsys@sina.com Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Shigella Shigella boydii BACTERIAL Shigella boydii Sb227 4 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Rod-shaped, Motile, Nonsporulating, Facultative, Mesophile Medical, Human Pathogen Dysenteria, Food poisoning Host Epidemic in China in 1950s China 51.2 Public Gc00322 000288_GCAT 300268 13146 637000261 4519 4353 1 1 NC_007613 NCBI, ShiBASE Microbial Genome Center of ChMPH MOST NAR 33, 6445-58 November 9, 2005 Jin Q zdsys@sina.com Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas savastanoi BACTERIAL Pseudomonas syringae phaseolicola 1448A / Race 6 phaseolicola 493507 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Aerobe, Motile, Rod-shaped, Mesophile, Heterotroph Agricultural, Plant Pathogen Plant rot, Halo blight Plants USA 58 Public Gc00321 000289_GCAT 264730 12416 637000223 5928 4984 1 2 NC_005773 NCBI, Cornell Univ TIGR, Cornell Univ NSF J Bacteriology 187, 6488-98 October 5, 2005 Lindeberg M ML16@cornell.edu Eukaryota unclassified Kinetoplastida Trypanosomatidae Leishmania Leishmania major EUKARYAL Leishmania major Friedlin Genome PROTISTS-EUGLENOZOA Quality Draft incomplete Pathogen, Parasite, Mesophile Medical, Human Pathogen, Animal Pathogen Skin ulcer, Visceral disease, Leishmaniasis United Kingdom 63 Public Gc00320 000290_GCAT 347515 10724 640281016 32800 8272 36 0 Chromosomes Leishmania Genome Network, NCBI, Sanger Institute, GeneDB SBRI, EULEISH, Sanger Institute BWF Science 309, 436-42 July 15, 2005 Stuart K kstuart@u.washington.edu Bacteria Cyanobacteria Chroococcales unclassified Synechococcus Synechococcus elongatus BACTERIAL Prochlorococcus (Synechococcus) elongatus PCC7942 109929 PCC 7942 Genome CYANOBACTERIA Complete complete Photosynthetic, Ocean carbon cycle, Carbon fixation, Rod-shaped, Photoautotroph, Mesophile Biotechnological, Environmental None Marine USA 55.5 Public Gc00319 000291_GCAT 1140 10645 637000308 2695 2612 1 3 NC_007604 NCBI, Joint Genome Institute Joint Genome Institute, Texas A&M Univ DOE Unpublished November 8, 2005 Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sakei BACTERIAL Lactobacillus sakei sakei 23K Genome FIRMICUTES Complete complete Nonmotile, Non-Pathogen, Rod-shaped, Facultative, Mesophile Food industry, Biotechnological, Lactic acid production None Fresh meat, Oral microflora, Vaginal microflora, Intestinal microflora French sausage France 41.3 Public Gc00318 000292_GCAT 314315 13435 637000142 1884 1880 1 0 NC_007576 NCBI, INRA INRA Nat. Biotechnology 23, 1527-33 November 10, 2005 Zagorec M Monique.Zagorec@jouy.inra.fr Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus MIT9312 Genome CYANOBACTERIA Complete complete Ocean carbon cycle, Photosynthetic, Nonmotile, Mesophile Biotechnological, Environmental None Marine Gulf Stream of North Atlantic Ocean USA 31.2 Public Gc00317 000293_GCAT 74546 13910 637000210 1709 1810 1 0 NC_007577 NCBI, Joint Genome Institute Joint Genome Institute, MIT DOE Unpublished November 3, 2005 Chisholm S http://web.mit.edu/biology/www/facultyareas/facresearch/chisholm.shtml Bacteria Proteobacteria Thiotrichales Piscirickettsiaceae Thiomicrospira Thiomicrospira crunogena BACTERIAL Thiomicrospira crunogena XCL-2 Genome PROTEOBACTERIA-GAMMA Complete complete Sulfur oxidizer, Carbon dioxide fixation, Desulfurylates coal, Spiral-shaped, Motile, Anaerobe, Chemoautotroph, Mesophile Biotechnological None Marine, Deep sea 28 - 32 Deep-sea hydrothermal vent USA 43.1 Public Gc00316 000294_GCAT 317025 13018 637000325 2427 2196 1 0 NC_007520 NCBI, Joint Genome Institute Joint Genome Institute, Univ of South Florida DOE PLos Biology 4, e383 November 1, 2005 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio desulfuricans BACTERIAL Desulfovibrio desulfuricans G20 Genome PROTEOBACTERIA-DELTA Complete complete Anaerobe, Sulfate reducer, Toxic metal reducer, Rod-shaped, Motile, Mesophile Bioremediation, Environmental None 25 - 40 Oil well corrosion site USA 57.8 Public Gc00315 000295_GCAT 207559 329 637000095 3730 3775 1 0 NC_007519 NCBI, Joint Genome Institute Joint Genome Institute, Univ of Missouri DOE Unpublished October 31, 2005 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Desulfuromonadales Geobacteraceae Geobacter Geobacter metallireducens BACTERIAL Geobacter metallireducens GS-15 160621 Genome PROTEOBACTERIA-DELTA Complete complete Rod-shaped, Motile, Anaerobe, Mesophile, Chemolithotroph Bioremediation, Environmental None Aquatic 30 Potomac river downstream of Washington DC in 1987 USA 59.5 Public Gc00314 000296_GCAT 269799 177 637000119 3997 3519 1 1 NC_007517 NCBI, Joint Genome Institute, Lovley Lab, Geobacter.org Joint Genome Institute, Univ of Massachusetts Amherst DOE Unpublished October 28, 2005 Lovley DR http://www.bio.umass.edu/micro/lovley.html Bacteria Cyanobacteria Chroococcales unclassified Synechococcus Synechococcus sp. CC9605 BACTERIAL Prochlorococcus (Synechococcus) sp. CC9605 (oligotrophic) Genome CYANOBACTERIA Complete complete Photosynthetic, Ocean carbon cycle, Oligotroph, Carbon dioxide fixation, Motile, Nonsporulating, Coccus-shaped, Mesophile, Photoautotroph Biotechnological, Environmental None Marine California coast USA 59.2 Public Gc00313 000297_GCAT 110662 13643 637000310 2510 2645 1 0 NC_007516 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished October 28, 2005 Richardson P microbes@cuba.jgi-psf.org Bacteria Chlorobi Chlorobiales Chlorobiaceae Chlorobium Chlorobium chlorochromatii BACTERIAL Chlorobium (Chlorochromatium) chlorochromatii (aggregatum) CaD3 Genome CHLOROBI Complete complete Phototroph, Motile, Green sulfur, Mesophile Biotechnological None USA 44.3 Public Gc00312 000298_GCAT 340177 13921 637000072 2572 2002 1 0 NC_007514 NCBI, Joint Genome Institute Joint Genome Institute, Penn State Univ DOE Unpublished October 27, 2005 Bryant D dab14@psu.edu Bacteria Cyanobacteria Chroococcales unclassified Synechococcus Synechococcus sp. CC9902 BACTERIAL Prochlorococcus (Synechococcus) sp. CC9902 (coastal) Genome CYANOBACTERIA Complete complete Photosynthetic, Ocean carbon cycle, Carbon dioxide fixation, Motile, Coccus-shaped, Mesophile, Photoautotroph Biotechnological, Environmental None Marine, Coastal Coastal seawater USA 54.2 Public Gc00311 000299_GCAT 316279 13655 637000311 2234 2307 1 0 NC_007513 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished October 27, 2005 Richardson P microbes@cuba.jgi-psf.org Bacteria Chlorobi Chlorobiales Chlorobiaceae Pelodictyon Pelodictyon luteolum BACTERIAL Chlorobium (Pelodictyon) luteolum DSMZ 273 156559 DSMZ 273 Genome CHLOROBI Complete complete Photosynthetic, Anaerobe, Phototroph, Green sulfur, Nonmotile, Rod-shaped, Mesophile Biotechnological None Aquatic, Mud, Hot spring 25 Meromictic Lake Polden in Norway USA 57.3 Public Gc00310 000300_GCAT 319225 13012 637000205 2364 2083 1 0 NC_007512 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished October 27, 2005 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. 383 BACTERIAL Burkholderia cepacia 383 (R18194) 299650 ATCC 17760, LMG 6991, NCIB 9086 Genome PROTEOBACTERIA-BETA Complete complete Motile, Facultative, Rod-shaped, Pathogen, Nitrogen fixation, Mesophile Environmental, Bioremediation, Medical, Animal Pathogen, Human Pathogen, Biocontrol, Agricultural, Biodegradation of pollutants Necrotizing Pneumonia, Chronic infection Host, Rhizosphere Forest soil in Trinidad in 1958 USA 66 Public Gc00309 000301_GCAT 269483 10695 637000051 8676 7717 3 0 NC_007509, NC_007510, NC_007511 NCBI, Joint Genome Institute Joint Genome Institute DOE Unpublished October 24, 2005 Tiedje J http://www.msu.edu/unit/mic/facpages/tiedje.html Bacteria Proteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas euvesicatoria BACTERIAL Xanthomonas campestris vesicatoria 85-10 vesicatoria Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Aerobe, Motile, Rod-shaped, Mesophile Agricultural, Plant Pathogen Bacterial spot Host 25 - 30 Germany 64.7 Public Gc00308 000302_GCAT 316273 13649 637000345 5178 4487 1 4 NC_007508 NCBI, Bielefeld Univ, GenDB-Bielefeld Univ Bielefeld Univ BMBF J. Bacteriol 187, 7254-66 October 23, 2005 Puhler A http://www.cebitec.uni-bielefeld.de/~puehler Bacteria Firmicutes Clostridiales Peptococcaceae Carboxydothermus Carboxydothermus hydrogenoformans BACTERIAL Carboxydothermus hydrogenoformans Z-2901 159585 DSM 6008 Genome FIRMICUTES Complete complete Anaerobe, Hyperthermophile, Chemolithotroph Biotechnological, Hydrogen production, Energy production None Aquatic 78 Hot swamp from Kunashir Island, Russia USA 42 Public Gc00307 000303_GCAT 246194 253 637000060 2401 2620 1 0 NC_007503 NCBI TIGR, COMB DOE PLoS Genet. 25, e65 October 23, 2005 Bacteria Proteobacteria Desulfuromonadales Pelobacteraceae Pelobacter Pelobacter carbinolicus BACTERIAL Pelobacter carbinolicus DSM 2380 157960 DSM 2380 Genome PROTEOBACTERIA-DELTA Complete complete Iron reducer, Rod-shaped, Anaerobe, Mesophile Biotechnological None Aquatic, Marine, Sludge USA 55.1 Public Gc00306 000304_GCAT 338963 13337 637000204 3662 3118 1 0 NC_007498 NCBI, Joint Genome Institute Joint Genome Institute, Univ of Massachusetts Amherst DOE Unpublished October 20, 2005 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens BACTERIAL Pseudomonas fluorescens PfO-1 Genome PROTEOBACTERIA-GAMMA Complete complete Aerobe, Motile, Rod-shaped, Non-Pathogen, Mesophile, Heterotroph Bioremediation, Environmental None Soil Agricultural loam soil in 1988 USA 60.5 Public Gc00305 000305_GCAT 205922 12 637000221 6438 5736 1 0 NC_007492 NCBI, Joint Genome Institute Joint Genome Institute, Tufts Univ DOE Unpublished October 11, 2005 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Chromatiales Chromatiaceae Nitrosococcus Nitrosococcus oceani BACTERIAL Nitrosococcus oceani C-107 268153 ATCC 19707 Genome PROTEOBACTERIA-GAMMA Complete complete Carbon sequestration, Autotroph, Nitrifying, Ammonia-oxidizer, Chemolithotroph, Motile, Mesophile, Aerobe Biotechnological, Environmental None Marine USA 50.3 Public Gc00304 000306_GCAT 323261 13993 637000194 3521 2974 1 1 NC_007484 NCBI, Joint Genome Institute Joint Genome Institute, Oregon State Univ DOE Appl Environ Microbiol 72, 6299-315 October 6, 2005 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 1710b Genome PROTEOBACTERIA-BETA Complete complete Non-Pathogen, Rod-shaped, Motile, Aerobe, Mesophile Medical, Human Pathogen, Biothreat Pneumonia, Bacteremia, Melioidosis Soil USA 68 Public Gc00303 000307_GCAT 320372 13954 637000049 8252 6347 2 0 NC_007434, NC_007435 NCBI, TIGR TIGR NIH-NIAID Unpublished October 3, 2005 Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae BACTERIAL Streptococcus agalactiae A909 Ic ABI 8x 125890 ATCC 27591 Genome FIRMICUTES Complete complete Pathogen, Facultative, Nonmotile, Nonsporulating, Coccus-shaped, Mesophile Medical, Animal Pathogen, Cattle Pathogen, Human Pathogen Meningitis, Septicemia, Pneumonia Host 37 USA 35.6 Public Gc00302 000308_GCAT 205921 326 637000286 2127 1996 1 0 NC_007432 NCBI TIGR NIH-NIAID PNAS 102, 13950-5 October 3, 2005 TIGR www@tigr.org Archaea Euryarchaeota Halobacteriales Halobacteriaceae Natronomonas Natronomonas pharaonis ARCHAEAL Natronomonas pharaonis DSM 2160, Gabara 111054 DSM 2160, ATCC 35678 Genome EURYARCHAEOTA-HALOBACTERIA Complete complete Halophile, Aerobe, Alkaliphile, Mesophile Biotechnological None Aquatic 8.5 Lake Gabara Egypt Germany 63.4 Public Gc00301 000309_GCAT 348780 15742 637000187 2595 2661 1 2 NC_007426 NCBI, Integr8 Max Planck Institute Genome Res. 15, 1336-43 October 3, 2005 Oesterhelt D oesterhe@biochem.mpg.de Bacteria Chlamydiae Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis HAR-13 A 621204 Genome CHLAMYDIAE Complete complete Rod-shaped, Obligate intracellular parasite, Parasite, Nonmotile, Mesophile Medical, Human Pathogen Pharyngitis, Bronchitis, Pneumonia Host USA 41.3 Public Gc00300 000310_GCAT 315277 13885 637000063 1044 911 1 1 NC_007429 NCBI RML-NIAID, Integrated Genomics Inc Infect. Immun. 73, 6407-18 September 23, 2005 Bacteria Cyanobacteria Nostocales Nostocaceae Anabaena Anabaena variabilis BACTERIAL Anabaena variabilis ATCC 29413 ABI 106830 ATCC 29413 Genome CYANOBACTERIA Complete complete Nitrogen fixation, Carbon dioxide fixation, Heterotroph, Motile, Aerobe, Filament-shaped, Mesophile Biotechnological, Energy production, Hydrogen production None Aquatic, Soil USA 41.4 Public Gc00299 000311_GCAT 240292 10642 637000006 6365 5043 1 3 NC_007413 NCBI, Joint Genome Institute Joint Genome Institute, Univ of Missouri DOE Unpublished September 20, 2005 Thiel T http://www.umsl.edu/~biology/Thiel/Thiel.html Bacteria Proteobacteria Rhizobiales Bradyrhizobiaceae Nitrobacter Nitrobacter winogradskyi BACTERIAL Nitrobacter winogradskyi Nb-255 104032 ATCC 25391 Genome PROTEOBACTERIA-ALPHA Complete complete Nitrifying, Carbon dioxide fixation, Nitrite-oxidizer, Rod-shaped, Motile, Facultative, Mesophile, Lithotroph Biotechnological None Soil USA 62.5 Public Gc00298 000312_GCAT 323098 13474 637000193 3402 3122 1 0 NC_007406 NCBI, Joint Genome Institute Joint Genome Institute DOE Appl Environ Microbiol 72, 2050-63 September 15, 2005 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Hydrogenophilales Hydrogenophilaceae Thiobacillus Thiobacillus denitrificans BACTERIAL Thiobacillus denitrificans ATCC 25259 103822 ATCC 25259 Genome PROTEOBACTERIA-BETA Complete complete Carbon fixation, Sulfur oxidizer, Iron oxidizer, Rod-shaped, Motile, Facultative, Chemolithotroph, Mesophile, Lithotroph Bioremediation, Environmental None Soil 28 - 32 Soil from Texas USA USA 66.1 Public Gc00297 000313_GCAT 292415 13025 637000324 2909 2827 1 0 NC_007404 NCBI, Joint Genome Institute Joint Genome Institute, Lawrence Livermore National Lab DOE J Bacteriology 188, 1473-88 September 9, 2005 Richardson P microbes@cuba.jgi-psf.org Archaea Euryarchaeota Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina barkeri ARCHAEAL Methanosarcina barkeri Fusaro 157017 Genome EURYARCHAEOTA-METHANOMICROBIA Complete complete Methanogen, Anaerobe, Cellulolytic, Carbon cycle, Nonmotile, Nonsporulating, Coccus-shaped, Mesophile, Lithotroph Energy production, Biotechnological, Environmental None Mud 35 - 40 Mud samples from Lago del Fusaro Lake in Naples Italy USA 39.3 Public Gc00295 000314_GCAT 269797 103 637000162 4837 3606 1 1 NC_007355 NCBI, Integr8, Joint Genome Institute Joint Genome Institute, Univ of Maryland DOE J Bacteriol 188, 7922-31 August 22, 2005 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia canis BACTERIAL Ehrlichia canis Jake Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Obligate intracellular, Rod-shaped, Mesophile Medical, Canine Pathogen, Animal Pathogen Ehrlichiosis, Anemia Host 2-year old dog in North Carolina in 1989 USA 29 Public Gc00294 000315_GCAT 269484 10694 637000097 1315 925 1 0 NC_007354 NCBI, Joint Genome Institute Joint Genome Institute, Univ of Texas DOE J Bacteriology 188, 4015-4023 August 22, 2005 Mavromatis K Kmavrommatis@lbl.gov Bacteria Chloroflexi unclassified unclassified Dehalococcoides Dehalococcoides sp. CBDB1 BACTERIAL Dehalococcoides sp CBDB1 Genome CHLOROFLEXI Complete complete Anaerobe, Dechlorinates Tetrachloroethene, Motile, Mesophile, Chemolithotroph Environmental, Ecological, Bioremediation, Biotechnological None Groundwater, Aquatic Anoxic river sediment Germany 47 Public Gc00293 000316_GCAT 255470 15604 637000090 1395 1458 1 0 NC_007356, AJ965256 NCBI, Max Planck Institute Max Planck Institute Nature Biotech. 23, 1269-73 August 19, 2005 Adrian L lorenz.adrian@tu-berlin.de Bacteria Proteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus necator BACTERIAL Ralstonia eutropha JMP134 2875 Genome PROTEOBACTERIA-BETA Complete complete Degrades pollutants, Chemolithoautotroph, Aerobe, Motile, Mesophile, Heterotroph Bioremediation, Environmental None Aquatic, Soil 30 USA 64.5 Public Gc00292 000317_GCAT 264198 10646 637000229 6532 5846 2 2 NC_007347, NC_007348 NCBI, Joint Genome Institute Joint Genome Institute, Univ Catolica de Chile DOE Unpublished August 18, 2005 Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus saprophyticus BACTERIAL Staphylococcus saprophyticus saprophyticus GTC 265 681611 ATCC 15305, NCTC 7292, DSM 20229 Genome FIRMICUTES Complete complete Coccus-shaped, Nonmotile, Aerobe, Nonsporulating, Mesophile Medical, Human Pathogen Urinary infection Host, Human skin Human urine specimen Japan 33.2 Public Gc00291 000318_GCAT 342451 15596 637000284 2516 2446 1 2 NC_007350 NCBI Kitasato Univ PNAS 102, 13272-7 August 12, 2005 Hattori M hattori@genome.ls.kitasato-u.ac.jp Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus NATL2A Genome CYANOBACTERIA Complete complete Ocean carbon cycle, Photosynthetic, Nonmotile, Oval-shaped, Mesophile Environmental None Marine 30 meters depth in North Atlantic Ocean USA 35.1 Public Gc00290 000319_GCAT 59920 13911 637000212 1842 1891 1 0 NC_007335 NCBI, Joint Genome Institute Joint Genome Institute, MIT DOE Unpublished August 12, 2005 Chisholm S http://web.mit.edu/biology/www/facultyareas/facresearch/chisholm.shtml Bacteria Proteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas haloplanktis BACTERIAL Pseudoalteromonas haloplanktis TAC125 Genome PROTEOBACTERIA-GAMMA Complete complete Psychrophile, Motile, Nonsporulating, Aerobe, Mesophile Biotechnological None Marine, Coastal Coastal sea water near a French Antarctic station France 40 Public Gc00289 000320_GCAT 326442 15713 637000217 3849 3488 2 0 NC_007481, NC_007482 NCBI, PsychroList, Psychroscope Institut Pasteur, Genoscope Genome Res 15, 1325-35 August 10, 2005 Danchin A http://www.pasteur.fr/recherche/unites/REG/ Bacteria Actinobacteria Actinomycetales Nocardiopsaceae Thermobifida Thermobifida fusca BACTERIAL Thermobifida fusca YX 501250 Genome ACTINOBACTERIA Complete complete Pathogen, Degrades organic material, Rod-shaped, Nonmotile, Sporulating, Aerobe, Thermophile Biotechnological, Medical, Human Pathogen Respiratory infection, Mushroom worker's disease, Farmer's lung Self-heated organic materials 50 - 55 USA 67.5 Public Gc00288 000321_GCAT 269800 94 637000319 3642 3110 1 0 NC_007333 NCBI, Joint Genome Institute Joint Genome Institute, Cornell Univ DOE J. Bacteriology 189, 2477-2486 August 10, 2005 Lykidis A alykidis@lbl.gov Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma hyopneumoniae BACTERIAL Mycoplasma hyopneumoniae 7448 Genome FIRMICUTES Complete complete Pathogen, Sphere-shaped, Nonsporulating, Nonmotile, Facultative, Mesophile Medical, Animal Pathogen Respiratory infection, Enzootic pneumonia Host 37 Infected pig in Lindoia do Sul Santa Catarina Brazil Brazil 28.5 Public Gc00287 000322_GCAT 262722 10639 637000178 920 663 1 0 NC_007332 NCBI, Brazilian Genome LNCC, Universidade Federal do Rio Grande do Sul J. Bacteriol. 187, 5568-5577 August 10, 2005 Zaha A zaha@cbiot.ufrgs.br Bacteria Proteobacteria Rhodocyclales Rhodocyclaceae Dechloromonas Dechloromonas aromatica BACTERIAL Dechloromonas aromatica RCB Genome PROTEOBACTERIA-BETA Complete complete Benzene degradation, Rod-shaped, Motile, Facultative, Hydrocarbon-oxidizing, Chlorate-reducer, Mesophile Bioremediation, Environmental None Aquatic Potomac River Maryland USA 59.3 Public Gc00286 000323_GCAT 159087 9635 637000088 4501 4171 1 0 NC_007298 NCBI, Joint Genome Institute Joint Genome Institute, Southern Illinois Univ DOE Unpublished August 8, 2005 Coates, J http://www.science.siu.edu/microbiology/coates/ Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes M1 MGAS5005 M1 493418 Genome FIRMICUTES Complete complete Pathogen, Facultative, Nonmotile, Nonsporulating, Coccus-shaped, Mesophile Medical, Human Pathogen, Animal Pathogen Pharyngitis, Tonsillitis, Sinusitis, Otitis, Mastoiditis, Pneumonia, Bone infection, Necrotizing fasciitis, Myositis, Meningitis, Endocarditis Host, Human nasopharyngeal microflora 35 Invasive case in Ontario USA 38.5 Public Gc00285 000324_GCAT 293653 13888 637000297 1838 1865 1 0 NC_007297 NCBI RML-NIAID, Integrated Genomics Inc NIH J. Infect. Dis. 192, 771-82 August 8, 2005 Musser JM http://www.niaid.nih.gov/dir/labs/lhbp/musser.htm Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes M28 MGAS6180 M28 692418 Genome FIRMICUTES Complete complete Pathogen, Facultative, Nonmotile, Nonsporulating, Coccus-shaped, Mesophile Medical, Human Pathogen, Animal Pathogen Pharyngitis, Tonsillitis Host, Human nasopharyngeal microflora 35 Invasive disease in Texas in 1998 USA 38.5 Public Gc00284 000325_GCAT 319701 13887 637000298 1897 1894 1 0 NC_007296 NCBI RML-NIAID, Integrated Genomics Inc NIH J. Infect. Dis. 192, 760-770 August 8, 2005 Musser JM http://www.niaid.nih.gov/dir/labs/lhbp/musser.htm Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma hyopneumoniae BACTERIAL Mycoplasma hyopneumoniae J 104692 ATCC 2593, NCTC 10110 Genome FIRMICUTES Complete complete Non-Pathogen, Sphere-shaped, Nonmotile, Facultative, Nonsporulating, Mesophile Medical None Host 37 Brazil 28.5 Public Gc00283 000326_GCAT 262719 10675 637000179 897 665 1 0 NC_007295 NCBI, Brazilian Genome LNCC, Universidade Federal do Rio Grande do Sul J. Bacteriol. 187, 5568-5577 August 7, 2005 Zaha A zaha@cbiot.ufrgs.br Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma synoviae BACTERIAL Mycoplasma synoviae 53 Genome FIRMICUTES Complete complete Pathogen, Facultative, Sphere-shaped, Nonmotile, Nonsporulating, Mesophile Medical, Animal Pathogen, Chicken Pathogen Respiratory infection Host 37 Broiler breeder pig in Parana Brazil Brazil 28.5 Public Gc00282 000327_GCAT 262723 10676 637000185 799 672 1 0 NC_007294 NCBI, Brazilian Genome LNCC, Universidade Federal do Rio Grande do Sul J. Bacteriol. 187, 5568-5577 August 7, 2005 Zaha A zaha@cbiot.ufrgs.br Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Candidatus Blochmannia Candidatus Blochmannia pennsylvanicus BACTERIAL Blochmannia pennsylvanicus BPEN Camponotus Genome PROTEOBACTERIA-GAMMA Complete complete Intracellular, Endosymbiont, Insect endosymbiont, Rod-shaped, Mesophile Evolutionary, Biotechnological, Pest control None Host USA 29.6 Public Gc00281 000328_GCAT 291272 13875 637000057 791 610 1 0 NC_007292, CP000016 NCBI Marine Biological Laboratory Genome Res 15, 1023-33 August 5, 2005 Bacteria Proteobacteria Alteromonadales Colwelliaceae Colwellia Colwellia psychrerythraea BACTERIAL Colwellia psychroerythraea 34H 681610 ATCC BAA-681 Genome PROTEOBACTERIA-GAMMA Complete complete Psychrophile, Carbon cycle, Rod-shaped, Motile, Facultative Biotechnological, Environmental None Sediment 8 Arctic marine sediments USA 38 Public Gc00280 000329_GCAT 167879 275 637000081 5373 4910 1 0 NC_003910 NCBI, Entrez TIGR DOE PNAS 102, 10913-8 July 26, 2005 TIGR www@tigr.org Bacteria Proteobacteria Rickettsiales unclassified Candidatus Pelagibacter Candidatus Pelagibacter ubique BACTERIAL Pelagibacter ubique SAR11 HTCC1062 680941 Genome PROTEOBACTERIA-ALPHA Complete complete Rod-shaped, Aerobe, Mesophile, Oligotroph Ecological, Environmental None Marine USA 29.7 Public Gc00279 000330_GCAT 335992 13989 637000058 1308 1354 1 0 NC_007205 NCBI, Oregon State Univ Oregon State Univ, Diversa, COMB NSF Science 309, 1242-5 July 25, 2005 Giovannoni SJ http://oregonstate.edu/dept/microbiology/fac/sp/giov1.html Bacteria Proteobacteria Pseudomonadales Moraxellaceae Psychrobacter Psychrobacter arcticus BACTERIAL Psychrobacter arcticum 273-4 690310 Genome PROTEOBACTERIA-GAMMA Complete complete Psychrophile, Radiation resistant, Rod-shaped, Nonmotile Biotechnological, Astrobiological None Aquatic, Soil, Fish -2.5-20 20-40000 year old Serbian permafrost in Russia USA 42.8 Public Gc00278 000331_GCAT 259536 9633 637000226 2650 2120 1 0 NC_007204 NCBI, Joint Genome Institute Joint Genome Institute, Michigan State Univ DOE Unpublished July 22, 2005 Richardson P microbes@cuba.jgi-psf.org Eukaryota Ascomycota Eurotiales Trichocomaceae Aspergillus Aspergillus fumigatus EUKARYAL Aspergillus fumigatus Af293 ABI 10.5x Genome FUNGI-ASCOMYCOTA Complete complete Pathogen, Mesophile Medical, Human Pathogen Aspergillosis United Kingdom 49.8 Public Gc00277 000332_GCAT 330879 131 638208601 29381 9926 8 0 NC_007194-201 NCBI, Sanger Institute, Institut Pasteur, GeneDB, Integr8 Sanger Institute, Univ of Manchester, TIGR, Institut Pasteur, Nagasaki Univ, Univ of Salamanca, OpGen NIH, Wellcome Trust, Beowulf Genomics Unpublished July 19, 2005 Berriman M mb4@sanger.ac.uk Eukaryota unclassified Kinetoplastida Trypanosomatidae Trypanosoma Trypanosoma cruzi EUKARYAL Trypanosoma cruzi CL Brener TC3 Genome PROTISTS-EUGLENOZOA Quality Draft complete Pathogen, Parasite, Mesophile Medical, Human Pathogen American Trypanosomiasis, Chagas disease International Public Gc00276 000333_GCAT 353153 11755 34000 22570 AAHK01000000 NCBI, TIGR, UNSAM, TIGR TIGR, Seattle Biomedical Research Institute, Univ of Uppsala NIH-NIAID Science 309, 409-15 July 15, 2005 Andersson B bjorn.andersson.medgen.uu.se Eukaryota unclassified Kinetoplastida Trypanosomatidae Trypanosoma Trypanosoma brucei EUKARYAL Trypanosoma brucei TREU927/4 GUTat10.1 Genome PROTISTS-EUGLENOZOA Quality Draft complete Pathogen, Parasite, Mesophile Medical, Human Pathogen, Animal Pathogen Human sleeping sickness, Trypanosomiasis Host International Public Gc00275 000334_GCAT 185431 11756 639622600 26000 9068 11 0 NC_008409- NCBI, Sanger Institute, TIGR, GeneDB, Cambridge Univ, ToxoDB Sanger Institute, TIGR Wellcome Trust, NIH-NIAID Science 309, 416-22 July 15, 2005 Berriman M mb4@sanger.ac.uk Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus haemolyticus BACTERIAL Staphylococcus haemolyticus JCSC1435 Genome FIRMICUTES Complete complete Pathogen, Nonmotile, Nonsporulating, Facultative, Coccus-shaped, Mesophile Biotechnological, Medical, Human Pathogen, Animal Pathogen Opportunistic infection Host, Human skin 30 - 37 Japan 32.8 Public Gc00274 000335_GCAT 279808 12508 637000283 2685 2676 1 3 NC_007168 NCBI, NITE NITE, Juntendo Univ J Bacteriol 187, 7292-308 July 12, 2005 Keiichi H hiram@med.juntendo.ac.jp Archaea Crenarchaeota Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus acidocaldarius ARCHAEAL Sulfolobus acidocaldarius DSM 639 156881 ATCC 33909 Genome CRENARCHAEOTA-THERMOPROTEI Complete complete Thermophile, Nonmotile, Obligate aerobe, Coccus-shaped, Acidophile, Sulfur oxidizer, Lithotroph Biotechnological None Aquatic 1-6 70 - 75 Terrestrial solfataras European Consortium 36.7 Public Gc00273 000336_GCAT 330779 13935 638154517 2225 2292 1 0 NC_007181 NCBI, Integr8, Univ of Copenhagen Epidauros Biotechnologie AG, Univ of Copenhagen European Union J. Bacteriol 187, 4992-9 July 8, 2005 Garrett RA garrett@mermaid.molbio.ku.dk Eukaryota Chordata Cypriniformes Cyprinidae Danio Danio rerio EUKARYAL Danio rerio Tuebingen ABI Genome CHORDATA-FISH Quality Draft incomplete Mesophile Aquatic International Public Gc00272 000337_GCAT 7955 11776 639469800 1700000 25 0 CAAK00000000 NCBI, Washington Univ, Univ of Oregon, Fishman-MGH, Carnegie Institute of Washington, Stanford Univ, Sanger Institute Washington Univ, Sanger Institute NIH Unpublished July 5, 2005 Johnson SL http://www.genetics.wustl.edu/molgen/johnson.html Bacteria Actinobacteria Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium jeikeium BACTERIAL Corynebacterium jeikeium K411 Genome ACTINOBACTERIA Complete complete Pathogen, Rod-shaped, Motile, Facultative, Lipophilic, Nonsporulating, Mesophile Medical, Human Pathogen Endocarditis, Septicemia, Meningitis, Nosocomial infection Host, Human skin Axilla of bone marrow transplant patient Germany 61.4 Public Gc00271 000338_GCAT 306537 13967 637000085 2462 2104 1 0 NC_007164 NCBI Institute of Genome Research, Bielefeld Univ Bielefeld Univ J Bacteriol 187, 4671-82 July 4, 2005 Tauch A Andreas.Tauch@Genetik.Uni-Bielefeld.DE Eukaryota Apicomplexa unclassified Theileriidae Theileria Theileria parva EUKARYAL Theileria parva Muguga Genome PROTISTS-APICOMPLEXA Quality Draft complete Pathogen, Intracellular, Parasite, Mesophile Medical, Animal Pathogen, Cattle Pathogen East Coast Fever USA 34.1 Public Gc00270 000339_GCAT 333668 16138 640281009 8308 4035 4 0 NC_007344-5 NCBI, TIGR TIGR, ILRI CGIAR Science 309, 134-7 July 1, 2005 Gardner MJ gardner@tigr.org Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens BACTERIAL Pseudomonas fluorescens Pf-5 493739 ATCC BAA-477 Genome PROTEOBACTERIA-GAMMA Complete complete Aerobe, Motile, Rod-shaped, Non-Pathogen, Mesophile, Heterotroph Bioremediation, Biotechnological, Antibiotic production, Environmental None Soil, Aquatic 25 - 30 USA 63.3 Public Gc00269 000340_GCAT 220664 327 637000220 7074 6137 1 0 NC_004129 NCBI, USDA, NGRP Oregon State Univ, TIGR USDA Nature Biotech 23, 873-8 June 30, 2005 Paulsen I http://www.bio.jhu.edu/Directory/Faculty/Paulsen/Default.html Bacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi 86-028NP Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Facultative, Nonmotile, Rod-shaped, Mesophile Medical, Human Pathogen Meningitis, Septicemia, Otitis media, Sinusitis, Bronchitis Host 35 - 37 Pediatric patient with otitis media from Columbus Children's Hospital USA 38.2 Public Gc00268 000341_GCAT 281310 11752 637000125 1913 1791 1 0 NC_007146 NCBI, Microgen, Microbial-pathogenesis Ohio State Univ NIH-NIDCD J. Bacteriol 187, 4627-4636 June 27, 2005 Dyer D david-dyer@ouhsc.edu Bacteria Proteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia felis BACTERIAL Rickettsia felis URRWXCal2 681609 ATCC VR-1525 Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Aerobe, Nonmotile, Nonsporulating, Obligate parasite, Mesophile Medical, Animal Pathogen Flea-borne Spotted Fever, Rickettsiosis Host France 32.5 Public Gc00267 000342_GCAT 315456 13884 637000244 1485 1400 1 2 NC_007109 NCBI CNRS CNRG PLoS Biology 3, e248 June 10, 2005 Raoult D didier.raoult@medecine.univ-mrs.fr Eukaryota unclassified Dictyosteliida unclassified Dictyostelium Dictyostelium discoideum EUKARYAL Dictyostelium discoideum AX4 695743 Genome PROTISTS-MYCETOZOA Quality Draft complete Mesophile Model organism Soil International 22 Public Gc00266 000343_GCAT 352472 201 639609200 34000 12500 6 0 NC_007087-92 NCBI, Univ of Kon, BCM-HGSC, IMB, Jena, Sanger Institute, dictyBase International Collaboration DFG, NIH, MRC, European Union Nature 435, 43-57 June 3, 2005 Kuspa A akuspa@bcm.tmc.edu Bacteria Proteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas campestris BACTERIAL Xanthomonas campestris campestris 8004 campestris 23433 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Aerobe, Motile, Rod-shaped, Mesophile Agricultural, Plant Pathogen Black rot, Citrus canker Host 25 - 30 Inflected cauliflower in Sussex UK in 1958 China 65 Public Gc00265 000344_GCAT 314565 15 637000343 5148 4273 1 0 NC_007086 NCBI Guangxi Univ, The Institute of Microbiology, China Genome Res 15, 757-67 May 27, 2005 Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae BACTERIAL Pseudomonas syringae syringae B728a syringae Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Aerobe, Motile, Rod-shaped, Mesophile, Heterotroph Agricultural, Plant Pathogen Plant rot Plants USA 59.2 Public Gc00264 000345_GCAT 205918 323 637000224 6100 5090 1 0 NC_007004 NCBI, Joint Genome Institute, Cornell Univ Joint Genome Institute, Univ of California, Berkeley DOE PNAS 102, 11064-9 May 17, 2005 Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Brucellaceae Brucella Brucella abortus BACTERIAL Brucella abortus 9-941 1 Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Aerobe, Nonmotile, Facultative, Rod-shaped, Mesophile Medical, Human Pathogen, Animal Pathogen, Cattle Pathogen, Biothreat Brucellosis Host 37 International 57.2 Public Gc00263 000346_GCAT 262698 9619 637000039 3287 3085 2 0 NC_006932, NC_006933 NCBI, IIB-UNSAM, Univ of Uppsala, Univ of Minnesota IIB-UNSAM, Univ of Uppsala, Univ of Minnesota USDA J Bacteriology 187, 2715-26 April 6, 2005 Halling SM shalling@nadc.ars.usda.gov Bacteria Chlamydiae Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila abortus BACTERIAL Chlamydophila abortus S26/3 Genome CHLAMYDIAE Complete complete Pathogen, Rod-shaped, Intracellular, Parasite, Mesophile Medical, Human Pathogen, Animal Pathogen Pharyngitis, Bronchitis, Pneumonia, Respiratory infection Host 37 Enzootic abortion case in sheep United Kingdom 39.9 Public Gc00262 000347_GCAT 218497 355 637000065 1144 932 1 0 NC_004552 NCBI, Sanger Institute Sanger Institute, Scottish Crop Research Institute, Moredun Res Inst The Scottish Office Genome Res. 15, 629-40 April 4, 2005 Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Choleraesuis SC-B67 Choleraesuis Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Facultative, Motile, Rod-shaped, Mesophile Medical, Human Pathogen, Animal Pathogen Salmonellosis, Swine paratyphoid, Food poisoning, Gastroenteritis Host, Food, Soil, Aquatic 37 58-year old man with sepsis China 52.2 Public Gc00261 000348_GCAT 321314 9618 637000251 4755 4666 1 2 NC_006905 NCBI Chang Gung Univ Nucleic Acids Res. 33, 1690-8 April 4, 2005 Chiu CH chchiu@adm.cgmh.org.tw Bacteria Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis BACTERIAL Bacteroides fragilis NCTC9343 5232 ATCC 25285, NCTC 9343 Genome BACTEROIDETES Complete complete Obligate anaerobe, Pathogen, Chemoorganotroph, Rod-shaped, Mesophile Medical, Human Pathogen, Animal Pathogen Diarrhea, Abcesses Host, Intestinal microflora 37 United Kingdom 43.2 Public Gc00260 000349_GCAT 272559 46 637000024 5205 4184 1 1 NC_003228 NCBI, Sanger Institute Sanger Institute Beowulf Genomics Science 5714, 1463-1465 March 4, 2005 Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Eukaryota unclassified unclassified unclassified Entamoeba Entamoeba histolytica EUKARYAL Entamoeba histolytica HM-1:IMSS ABI 12.5x 681606 ATCC 30459 Genome PROTISTS-ENTAMOEBIDAE Quality Draft complete Parasite, Pathogen, Mesophile Medical, Human Pathogen Amoebiasis Host International 24.3 Public Gc00259 000350_GCAT 294381 142 640281001 20772 9938 14 0 NZ_AAFB00000000 NCBI, TIGR, Sanger Institute TIGR, Sanger Institute, London School of Hygiene and Tropical Medicine NIH-NIAID, Wellcome Trust Nature 433, 865-8 February 25, 2005 Loftus B bjloftus@tigr.org Bacteria Proteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae BACTERIAL Neisseria gonorrhoeae FA1090 118547 ATCC 700825 Genome PROTEOBACTERIA-BETA Complete complete Pathogen, Aerobe, Nonmotile, Coccus-shaped, Mesophile Medical, Human Pathogen Gonorrhea Host 35 - 37 Patient with disseminated gonococcal infection USA 52.7 Public Gc00258 000351_GCAT 242231 23 637000188 2153 2002 1 0 NC_002946, AE004969 NCBI, Univ of Oklahoma, Microgen Univ of Oklahoma, Ohio State Univ NIH-NIAID Unpublished February 15, 2005 Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio fischeri BACTERIAL Vibrio fischeri ES114 118194 ATCC 700601 Euprymna scolopes Genome PROTEOBACTERIA-GAMMA Complete complete Non-Pathogen, Heterotroph, Rod-shaped, Facultative, Motile, Luminescent, Symbiont, Mesophile Medical None Aquatic Light organs of the squid Euprymna scolopes USA 38.3 Public Gc00257 000352_GCAT 312309 12986 637000334 4238 3747 2 1 NC_006840, NC_006841 NCBI, Integrated Genomics Inc Integrated Genomics Inc, Univ of Hawaii W.M. Keck Foundation PNAS 102, 3004-3009 February 14, 2005 Ruby EG http://www.kewalo.hawaii.edu/labs/ruby/ Bacteria Proteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas oryzae BACTERIAL Xanthomonas oryzae pv. oryzae KX085 681604 KACC10331 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Rod-shaped, Motile, Aerobe, Mesophile Agricultural, Plant Pathogen Blight disease Host Korea 63.7 Public Gc00256 000353_GCAT 291331 12931 637000346 4941 4637 1 0 NC_006834, AE013598 NCBI, NIAB NIAB, MACROGEN NAR 33, 577-86 February 4, 2005 Lee BM lbmoo@rda.go.kr Bacteria Proteobacteria Rickettsiales Rickettsiaceae Wolbachia Wolbachia endosymbiont of Brugia malayi BACTERIAL Wolbachia sp. TRS Brugia malayi Genome PROTEOBACTERIA-ALPHA Complete complete Endosymbiont, Aerobe, Nonmotile, Coccus-shaped, Nematode endosymbiont, Mesophile Biotechnological None Host USA 34.2 Public Gc00255 000354_GCAT 292805 12475 637000340 1080 805 1 0 NC_006833, AE017321 NCBI, NEB New England Biolabs, Integrated Genomics Inc NEB PLoS Biology 3, e121 February 4, 2005 Slatko B http://tools.neb.com/wolbachia/labsite/barton2.html Bacteria Proteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia ruminantium BACTERIAL Ehrlichia ruminantium Welgevonden, CIRAD Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Obligate intracellular parasite, Mesophile Medical, Animal Pathogen, Ruminant Pathogen Heartwater Host Infected tick France 27.5 Public Gc00254 000355_GCAT 254945 13355 639279309 1512 958 1 0 NC_006832, CR925678 NCBI CIRAD J Bacteriology 188, 2533-42 February 4, 2005 Frutos R roger.frutos@cirad.fr Bacteria Proteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia ruminantium BACTERIAL Ehrlichia ruminantium Gardel Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Obligate intracellular parasite, Mesophile Medical, Animal Pathogen, Ruminant Pathogen Heartwater Host Caribbean island of Guadeloupe France 27.5 Public Gc00253 000356_GCAT 302409 13356 637000099 1499 950 1 0 NC_006831, CR925677 NCBI CIRAD J Bacteriology 188, 2533-42 February 4, 2005 Frutos R roger.frutos@cirad.fr Bacteria Firmicutes Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus acidophilus BACTERIAL Lactobacillus acidophilus NCFM 681603 ATCC 700396 Genome FIRMICUTES Complete complete Probiotic, Rod-shaped, Facultative, Mesophile Food industry, Biotechnological, Yogurt production None Host, Intestinal microflora, Oral microflora, Vaginal microflora 4-5 45 Human in 1970 USA 34.7 Public Gc00252 000357_GCAT 272621 82 637000138 1993 1864 1 0 NC_006814, CP000033 NCBI, CALPOLY State Univ of New York, California Polytechnic State Univ, Environm Biotech Inst Dairy Management Inc, Environm Biotech Inst PNAS 102, 3906-12 January 31, 2005 Cano R http://www.calpoly.edu/~rcano/ Bacteria Proteobacteria Rhodospirillales Acetobacteraceae Gluconobacter Gluconobacter oxydans BACTERIAL Gluconobacter oxydans 621H 12015 Genome PROTEOBACTERIA-ALPHA Complete complete Aerobe, Rod-shaped, Motile, Acidophile, Mesophile Biotechnological, Vitamin C production None Plants, Fruits, Wine, Beer 25 - 30 Germany 61.1 Public Gc00251 000358_GCAT 290633 13325 637000122 2702 2432 1 5 NC_006677, CP000009 NCBI, Goettingen Genomics Laboratory Competence Network, Julich GmbH, Georg-August-Univ Goettingen, Technische Univ, Berlin BMBF, BASF Nat. Biotechnology 23, 195-200 January 24, 2005 Sahm H h.sahm@fz-juelich.de Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis BACTERIAL Staphylococcus epidermidis RP62A 111590 ATCC 35984 Genome FIRMICUTES Complete complete Pathogen, Nonmotile, Nonsporulating, Facultative, Coccus-shaped, Mesophile Medical, Human Pathogen Nosocomial infection, Septicemia, Toxic-shock syndrome, Staphylococcal scarlet fever Host 30 - 37 Patient with intravascular catheter-associated sepsis USA 32.2 Public Gc00250 000359_GCAT 176279 64 637000282 2616 2494 1 1 NC_002976, CP000029 NCBI TIGR NIH-NIAID J Bacteriology 187, 2426-38 January 18, 2005 Gill SR srgill@tigr.org Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus COL Genome FIRMICUTES Complete complete Pathogen, Facultative, Coccus-shaped, Nonsporulating, Nonmotile, Mesophile Medical, Human Pathogen, Animal Pathogen, Cattle Pathogen, Poultry Pathogen Toxic-shock syndrome, Fever, Nosocomial infection, Boils, Furunculosis, Styes, Impetigo, Pneumonia, Osteomyelitis, Endocarditis, Phlebitis, Mastitis, Meningitis Host 30 - 37 USA 32.8 Public Gc00249 000360_GCAT 93062 238 637000273 2809 2615 1 1 NC_002951, CP000046 NCBI TIGR MGRI, NIH-NIAID J Bacteriology 187, 2426-38 January 13, 2005 Gill SR http://www.tigr.org/~srgill/ Archaea Euryarchaeota Thermococcales Thermococcaceae Thermococcus Thermococcus kodakarensis ARCHAEAL Thermococcus kodakaraensis KOD1 387880 Genome EURYARCHAEOTA-THERMOCOCCI Complete complete Hyperthermophile, Heterotroph, Motile, Anaerobe Biotechnological None Hydrothermal vent 85 Solfatara on Kodakara Island Japan Japan 52 Public Gc00248 000361_GCAT 69014 13213 638154520 2088 2306 1 0 NC_006624 NCBI, Integr8 Kyoto Univ, Kwansei Gakuin Univ Genome Res 15, 352-63 January 13, 2005 Fukui T tfukui@bio.titech.ac.jp Eukaryota Basidiomycota Tremellales Tremellaceae Filobasidiella Filobasidiella neoformans EUKARYAL Cryptococcus neoformans JEC 21 ABI 12.5x 502433 Genome FUNGI-BASIDIOMYCOTA Quality Draft complete Bipolar, Heterothallic, Pathogen, Mesophile Medical, Human Pathogen Cryptococcosis Soil USA 48.6 Public Gc00247 000362_GCAT 214684 13856 638208604 19051 6744 14 0 NC_006670-94 NCBI, TIGR, Stanford Univ, Integr8 TIGR, Stanford Univ NIH-NIAID Science 307, 1321-4 January 10, 2005 TIGR crypt@tigr.org Bacteria Chloroflexi unclassified unclassified Dehalococcoides Dehalococcoides ethenogenes BACTERIAL Dehalococcoides ethenogenes 195 Genome CHLOROFLEXI Complete complete Anaerobe, Dechlorinates Tetrachloroethene, Motile, Nonsporulating, Mesophile, Chemolithotroph Environmental, Ecological, Bioremediation, Biotechnological None Groundwater, Aquatic 35 USA 48.9 Public Gc00246 000363_GCAT 243164 214 637000089 1500 1591 1 0 NC_002936 NCBI TIGR DOE Science 307, 105-8 January 7, 2005 Seshadri R rekha@tigr.org Bacteria Proteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni RM1221 681600 ATCC BAA-1062 Genome PROTEOBACTERIA-EPSILON Complete complete Motile, Spiral-shaped, Pathogen, Mesophile Medical, Human Pathogen, Animal Pathogen, Poultry Pathogen Food poisoning, Diarrhea Host, Wastewater 42 Skin of a retail chicken by the Food Safety Research Information Office USA 30.31 Public Gc00245 000364_GCAT 195099 303 637000054 1778 1838 1 0 NC_003912, CP000025 NCBI TIGR USDA PLoS Biol. 3, e15 January 7, 2005 TIGR www@tigr.org Bacteria Proteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia ruminantium BACTERIAL Ehrlichia ruminantium Welgevonden, ARC-OVI Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Obligate intracellular parasite, Mesophile Medical, Animal Pathogen, Ruminant Pathogen Heartwater Host Infected tick South Africa 27.5 Public Gc00244 000365_GCAT 254945 9614 639279308 1516 888 1 0 NC_005295, CR767821 NCBI, OVI, Sanger Institute Univ of Pretoria, Sanger Institute DST, WOTRO PNAS 102, 838-843 January 5, 2005 Allsopp BA basil.allsopp@up.ac.za Bacteria Cyanobacteria Chroococcales unclassified Synechococcus Synechococcus elongatus BACTERIAL Synechococcus elongatus PCC 6301 104959 Genome CYANOBACTERIA Complete complete Photosynthetic, Ocean carbon cycle, Motile, Photoautotroph, Rod-shaped, Mesophile Environmental None Aquatic, Fresh water Japan 55 Public Gc00243 000366_GCAT 269084 13282 637000307 2696 2527 1 0 NC_006576, AP008231 NCBI, Nagoya Univ Nagoya Univ Photosynth Res. Epub December 21, 2004 Sugita M sugita@gene.nagoya-u.ac.jp Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Silicibacter Silicibacter pomeroyi BACTERIAL Silicibacter pomeroyi DSS-3 118527 ATCC 700808, DSM 15171 Genome PROTEOBACTERIA-ALPHA Complete complete Heterotroph, Sulfur cycle, Rod-shaped, Aerobe, Motile, Mesophile Environmental None Aquatic USA 64.2 Public Gc00242 000367_GCAT 246200 281 637000267 4109 3810 1 1 NC_003911, CP000031 NCBI, RoseoBase Univ of Georgia, TIGR NSF Nature 432, 910-3 December 16, 2004 Moran MA http://alpha.marsci.uga.edu/Department_page/Profiles/mmoran.htm Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis SCHU S4 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Rod-shaped, Aerobe, Nonmotile, Mesophile Medical, Biothreat, Human Pathogen Tularemia Aquatic, Host Human case of tularemia in 1951 International 32.3 Public Gc00241 000368_GCAT 177416 9 637000114 1892 1603 1 0 NC_006570, AJ749949 NCBI, Univ of Uppsala, GIB, Entrez Univ of Uppsala, WRAIR, MDS WRAIR, UK-MOD, FOI, DARPA Nature Genetics 37, 153-9 December 14, 2004 Titball RW rtitball@dstl.gov.uk Bacteria Proteobacteria Sphingomonadales Sphingomonadaceae Zymomonas Zymomonas mobilis BACTERIAL Zymomonas mobilis mobilis ZM4 108566 ATCC31821 Genome PROTEOBACTERIA-ALPHA Complete complete Facultative, Motile, Rod-shaped, Ethanol production, Mesophile Biotechnological, Energy production, Biofuels, Bioenergy None 25 - 30 Korea 46.3 Public Gc00240 000369_GCAT 264203 12354 637000356 2056 1998 1 1 NC_006526, AE008692 NCBI Macrogen, Seoul National Univ Macrogen Nat. Biotechnol. 23, 63-68 December 12, 2004 Seo J-S jeongsun@macrogen.com Bacteria Proteobacteria Rickettsiales Anaplasmataceae Anaplasma Anaplasma marginale BACTERIAL Anaplasma marginale St. Maries Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Aerobe, Obligate intracellular, Coccus-shaped, Mesophile Medical, Animal Pathogen, Cattle Pathogen, Human Pathogen Anaplasmosis Host Acutely infected cow from Northern Idaho USA 49.8 Public Gc00239 000370_GCAT 234826 40 637000008 1197 949 1 0 NC_004842, CP000030 NCBI, Washington State Univ Amplicon Express Inc, Washington State Univ, ADRU USDA PNAS 102, 844-9 December 8, 2004 Herndon D david@genomex.com Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella paratyphi BACTERIAL Salmonella enterica Paratyphi A SARB42 Paratyphi A 681598 ATCC 9150 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Facultative, Motile, Rod-shaped, Mesophile Medical, Human Pathogen Typhoid fever, Salmonellosis, Food poisoning, Gastroenteritis Host, Food, Aquatic, Soil 37 USA 52.5 Public Gc00238 000371_GCAT 295319 13086 637000252 4585 4093 1 0 NC_006511, CP000026 NCBI, Washington Univ Washington Univ NIH-NIAID Nature Genetics 36, 1268-74 December 8, 2004 McClelland M mmcclelland@skcc.org Bacteria Firmicutes Bacillales Bacillaceae Geobacillus Geobacillus kaustophilus BACTERIAL Geobacillus (Bacillus) kaustophilus HTA426 Genome FIRMICUTES Complete complete Aerobe, Thermophile, Rod-shaped, Motile, Sporulating Biotechnological None Marine, Deep sea Japan 52.1 Public Gc00237 000372_GCAT 235909 13233 637000118 3544 3498 1 1 NC_006510, BA000043 NCBI, ExtremoBase JAMSTEC Nucleic Acids Res 32, 6292-303 December 8, 2004 Takami H takamih@jamstec.go.jp Bacteria Proteobacteria Alteromonadales Idiomarinaceae Idiomarina Idiomarina baltica BACTERIAL Idiomarina baltica OS145 ABI DSM 15154, LMG 21691 Genome PROTEOBACTERIA-GAMMA Draft incomplete Motile, Aerobe, Thermotolerant, Halotolerant, Mesophile Environmental, MMI None Marine 30 - 40 Oxic water column of the Gotland Deep in the Baltic Sea at a depth of 30m USA 47.3 Public Gi00831 000373_GCAT 314276 13408 638341106 2715 2608 1 0 NZ_AAMX00000000 NCBI, JCVI J Craig Venter Institute, German Research Centre for Biotechnology Moore Foundation Hofle M http://www.gbf.de/index.html Bacteria Proteobacteria Alteromonadales Idiomarinaceae Idiomarina Idiomarina loihiensis BACTERIAL Idiomarina loihiensis L2TR 371300 ATCC BAA-735T, DSM 15497T Genome PROTEOBACTERIA-GAMMA Complete complete Halophile, Rod-shaped, Aerobe, Mesophile, Psychrotolerant Biotechnological None Marine, Hydrothermal vent 4 - 46 USA 47 Public Gc00236 000374_GCAT 283942 10790 637000136 2839 2628 1 0 NC_006512, AE017340 NCBI, Univ of Hawaii Univ of Hawaii NSF PNAS 101, 18036-18041 December 2, 2004 Maqsudul A http://www.hawaii.edu/microbiology/Alam/ Bacteria Deinococcus-Thermus Thermales Thermaceae Thermus Thermus thermophilus BACTERIAL Thermus thermophilus HB8 120272 ATCC 27634, DSM 579 Genome THERMI Complete complete Thermophile, Aerobe, Nonmotile, Halotolerant Biotechnological None Aquatic, Hot spring 85 Thermal vent in Japan Japan 69.4 Public Gc00235 000375_GCAT 300852 13202 637000323 1849 1973 1 2 NC_006461, AP008226 NCBI, GIB NIAIST Unpublished November 23, 2004 Kuramitsu S kuramitu@bio.sci.osaka-u.ac.jp Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus thermophilus BACTERIAL Streptococcus thermophilus LMG18311 45292 ATCC BAA-250 Genome FIRMICUTES Complete complete Facultative, Thermophile, Nonmotile, Nonsporulating, Non-Pathogen Biotechnological, Food industry, Lactic acid production, Yogurt production None Milk 45 Commercial yogurt in 1974 in the United Kingdom International 39.1 Public Gc00234 000376_GCAT 264199 13162 637000303 1796 2025 1 0 NC_006448, CP000023 NCBI, UCL INRA, Integrated Genomics Inc, Univ catholique de Louvain Walloon Region, FNRS Nature Biotech 22, 1554-8 November 15, 2004 Ehrlich SD ehrlich@diamant.jouy.inra.fr Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus thermophilus BACTERIAL Streptococcus thermophilus CNRZ 1066 386925 Genome FIRMICUTES Complete complete Facultative, Thermophile, Nonmotile, Nonsporulating, Non-Pathogen Biotechnological, Food industry, Lactic acid production, Yogurt production None Milk 45 International 39.1 Public Gc00233 000377_GCAT 299768 13163 637000302 1796 1915 1 0 NC_006449, CP000024 NCBI, Entrez INRA, Integrated Genomics Inc, Univ catholique de Louvain Walloon Region, FNRS Nature Biotech 22, 1554-8 November 15, 2004 Ehrlich SD ehrlich@diamant.jouy.inra.fr Bacteria Proteobacteria Rhodocyclales Rhodocyclaceae Azoarcus Azoarcus sp. EbN1 BACTERIAL Azoarcus sp. EbN1 Genome PROTEOBACTERIA-BETA Complete complete Diazotroph, Denitrifying, Hydrocarbons metabolizer, Nitrate reducer, Rod-shaped, Facultative, Mesophile Biotechnological, Agricultural None Soil, Host 26 Germany 65.1 Public Gc00232 000378_GCAT 76114 13242 637000012 4296 4133 1 2 NC_006513, CR555306 NCBI, Max Planck Institute Max Planck Institute Max Planck Society Arch Microbiol. 183, 27-36 November 13, 2004 Rabus R rrabus@mpi-bremen.de Archaea Euryarchaeota Halobacteriales Halobacteriaceae Haloarcula Haloarcula marismortui ARCHAEAL Haloarcula marismortui ATCC43049 112059 ATCC 43049 Genome EURYARCHAEOTA-HALOBACTERIA Complete complete Halophile, Motile, Aerobe, Mesophile, Chemoorganotroph, Proteolytic Biotechnological None Marine 40 - 50 Dead Sea USA 61.1 Public Gc00231 000379_GCAT 272569 105 638154503 3421 3412 2 7 NC_006396, NC_006397 NCBI, Integr8, Institute for Systems Biology Institute for Systems Biology NSF, DOE Genome Res 14, 2221-2234 November 4, 2004 Baliga NS nbaliga@systemsbiology.org Eukaryota Apicomplexa Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium hominis EUKARYAL Cryptosporidium hominis TU502 ABI Genome PROTISTS-APICOMPLEXA Quality Draft incomplete Pathogen, Parasite, Mesophile Medical, Human Pathogen, Animal Pathogen Gastroenteritis, Diarrhea Host USA Public Gc00230 000380_GCAT 353151 13200 640281014 9160 3994 8 0 AAEL01000000 NCBI, Virginia Commonwealth Univ Virginia Commonwealth Univ NIH Nature 431, 1107-1112 October 28, 2004 Buck GA http://www.vcu.edu/lifesci/education/buck.html Eukaryota Chordata Tetraodontiformes Tetraodontidae Tetraodon Tetraodon nigroviridis EUKARYAL Tetraodon nigroviridis ABI 6X Genome CHORDATA-FISH Quality Draft complete Mesophile None Aquatic Rivers and estuaries of Indonesia Malaysia and India USA Public Gc00229 000381_GCAT 99883 12350 385000 21 0 CAAE01000000 NCBI, Genoscope, Broad Institute, NHGRI Genoscope, Broad Institute NIH-NHGRI Nature 431, 946-57 October 21, 2004 MIT annotation-info@genome.wi.mit.edu Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus clausii BACTERIAL Bacillus clausii KSM-K16 Genome FIRMICUTES Complete complete Alkalitolerant, Probiotic, Protease production, Mesophile Biotechnological None Soil Japan 44.8 Public Gc00228 000382_GCAT 66692 13291 637000019 4303 4096 1 0 NC_006582, AP006627 NCBI, GIB Kao Corporation, Japan Unpublished October 20, 2004 Kawai S kawai.shuji@kao.co.jp Bacteria Proteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium profundum BACTERIAL Photobacterium profundum SS9 379911 Genome PROTEOBACTERIA-GAMMA Complete complete Barophile, Psychrotolerant, Piezophile, Rod-shaped, Motile, Facultative, Nonsporulating, Bioluminescent Biotechnological None Aquatic 15 2500m depth from the Sulu Trough Italy 41.7 Public Gc00227 000383_GCAT 298386 13128 637000206 6322 5424 2 1 NC_006370, NC_006371 NCBI, CRIBI Padova Univ Science 307, 1459-61 October 19, 2004 Vale G giorgio.valle@unipd.it Bacteria Proteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila BACTERIAL Legionella pneumophila Lens Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Rod-shaped, Motile, Aerobe, Mesophile Medical, Human Pathogen, Animal Pathogen Legionellosis Aquatic, Host France 38.4 Public Gc00226 000384_GCAT 297245 13126 637000146 3345 2878 1 1 NC_006369, CR628337 NCBI, Institut Pasteur Institut Pasteur CNRS Nature Genetics 36, 1165-73 October 19, 2004 Buchrieser C cbuch@pasteur.fr Bacteria Proteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila BACTERIAL Legionella pneumophila Paris Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Rod-shaped, Motile, Aerobe, Mesophile Medical, Human Pathogen, Animal Pathogen Pneumonia, Legionellosis Aquatic, Host France 38.3 Public Gc00225 000385_GCAT 297246 13127 637000147 3503 3027 1 1 NC_006368, CR628336 NCBI, Institut Pasteur, Entrez Institut Pasteur CNRS Nature Genetics 36, 1165-73 October 19, 2004 Buchrieser C cbuch@pasteur.fr Bacteria Actinobacteria Actinomycetales Nocardiaceae Nocardia Nocardia farcinica BACTERIAL Nocardia farcinica IFM 10152 Genome ACTINOBACTERIA Complete complete Pathogen, Filament-shaped, Sporulating, Nonmotile, Aerobe, Mesophile Medical, Human Pathogen, Animal Pathogen Nocardiosis, Mastitis Aquatic, Soil 37 Japan 70.8 Public Gc00224 000386_GCAT 247156 13117 637000198 6021 5683 1 2 NC_006361, AP006618 NCBI, NIID NIID, Kitasato Univ, Chiba Univ JSPS PNAS 101, 14925-30 October 4, 2004 Ishikawa J jun@nih.go.jp Eukaryota Bacillariophyta unclassified Thalassiosiraceae Thalassiosira Thalassiosira pseudonana EUKARYAL Thalassiosira pseudonana CCMP 1335 ABI 14x 527168 Genome PROTISTS-BACILLARIOPHYTA Quality Draft complete Carbon cycle, Carbon sequestration, Photosynthetic, Mesophile Environmental None Marine USA 47 Public Gc00223 000387_GCAT 296543 191 25000 11242 24 0 AAFD01000000 NCBI, Joint Genome Institute Joint Genome Institute, Univ of Washington DOE Science 306, 79-86 October 1, 2004 Rokhsar DS dsrokhsar@lbl.gov Bacteria Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis BACTERIAL Bacteroides fragilis YCH46 Genome BACTEROIDETES Complete complete Obligate anaerobe, Pathogen, Chemoorganotroph, Rod-shaped, Mesophile Medical, Human Pathogen, Animal Pathogen Diarrhea, Abcesses Host, Intestinal microflora 37 Japan 43.3 Public Gc00222 000388_GCAT 295405 13067 637000025 5277 4578 1 1 NC_006347, AP006841 NCBI Tokushima Univ, Kitasato Univ, RIKEN JSPS PNAS 101, 14919-24 October 1, 2004 Kuwahara T tomomi@basic.med.tokushima-u.ac.jp Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus licheniformis BACTERIAL Bacillus licheniformis DSM13 Goettingen 29491 ATCC 14580 Genome FIRMICUTES Complete complete Facultative, Sporulating, Subtilisin production, Amylase production, Rod-shaped, Pathogen, Mesophile Biotechnological, Medical, Human Pathogen Food poisoning Soil Germany 46.2 Public Gc00221 000389_GCAT 279010 13082 639279303 4222 4196 1 0 NC_006322, AE017333 NCBI, Goettingen Genomics Laboratory Competence Network, Goettingen Genomics Laboratory Henkel J Mol Microbiol Biotechnol 7, 204-11 September 28, 2004 Ehrenreich A aehrenr@gwdg.de Bacteria Proteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia akari BACTERIAL Rickettsia akari Hartford ABI Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Aerobe, Nonmotile, Nonsporulating, Obligate parasite, Mesophile Medical, Human Pathogen Rickettsial pox Host USA 32.3 Public Gc00220 000390_GCAT 293614 12953 640753043 1231 1217 1 0 NC_009881 NCBI Univ of Iowa Unpublished October 2, 2007 Bacteria Proteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila BACTERIAL Legionella pneumophila Philadelphia-1 108917 ATCC 33152 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Aerobe, Motile, Chemoorganotroph, Rod-shaped, Mesophile Medical, Human Pathogen, Animal Pathogen Legionellosis Soil, Aquatic, Host, Wastewater USA 38.3 Public Gc00219 000391_GCAT 272624 22 637000148 3397 2942 1 0 NC_002942, AE017354 NCBI, Columbia Univ, Entrez Columbia Univ NIH-NIAID Science 305, 1966-1968 September 24, 2004 Russo J http://genome4.cpmc.columbia.edu/researcher/russo.html Bacteria Proteobacteria Pasteurellales Pasteurellaceae Mannheimia Mannheimia succiniciproducens BACTERIAL Mannheimia succiniciproducens MBEL55E Genome PROTEOBACTERIA-GAMMA Complete complete Nonsporulating, Succinic acid production, Nonmotile, Anaerobe, Non-Pathogen, Rod-shaped, Mesophile Biotechnological None Bovine rumen, Host 37 Korea 42.5 Public Gc00218 000392_GCAT 221988 13068 637000156 2314 2380 1 0 NC_006300, AE016827 NCBI, Entrez KAIST Nat. Biotechnol. 22, 1275-1281 September 22, 2004 Bacteria Proteobacteria Methylococcales Methylococcaceae Methylococcus Methylococcus capsulatus BACTERIAL Methylococcus capsulatus Bath 108702 NCIMB 11132 Genome PROTEOBACTERIA-GAMMA Complete complete Aerobe, Methanotroph, Coccus-shaped, Thermophile Environmental, Bioremediation None 45 International 63.6 Public Gc00217 000393_GCAT 243233 21 637000166 3304 2956 1 0 NC_002977, AE017282 NCBI TIGR, Univ of Bergen, Norway DOE PLOS Biology 2, 1616-1628 September 17, 2004 Ward N nward@tigr.org Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei BACTERIAL Burkholderia mallei ATCC 23344 278058 ATCC 23344, NBL 7, China 7, 3873, EY 2233, RH627 Genome PROTEOBACTERIA-BETA Complete complete Pathogen, Rod-shaped, Motile, Aerobe, Mesophile Medical, Animal Pathogen, Human Pathogen, Biothreat Glanders, Pneumonia Host, Soil Chinese patient in Burma who had glanders in 1944 USA 68 Public Gc00216 000394_GCAT 243160 171 637000048 5835 5025 2 0 NC_006348, NC_006349, CP000010, CP000011 NCBI TIGR, USAMRIID NIH-NIAID PNAS 101, 14246-51 September 17, 2004 Nierman WC http://www.tigr.org/~wnierman/ Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus E33L (ZK) Genome FIRMICUTES Complete complete Pathogen, Facultative, Sporulating, Motile, Rod-shaped, Mesophile Medical, Biothreat, Human Pathogen, Animal Pathogen Food poisoning Soil Swab of a zebra carcass in Ethosha National Park in Namibia in 1996 USA 35.4 Public Gc00215 000395_GCAT 288681 12468 637000018 5300 5134 1 5 NC_006274, CP000001 NCBI Joint Genome Institute, Los Alamos National Laboratory DOE J. Bacteriology 188, 3382-3390 September 16, 2004 Gilna P pgil@lanl.gov Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei K96243 Genome PROTEOBACTERIA-BETA Complete complete Aerobe, Rod-shaped, Motile, Pathogen, Mesophile Medical, Biothreat, Animal Pathogen, Human Pathogen Melioidosis Soil Clinical isolate from Thailand United Kingdom 68 Public Gc00214 000396_GCAT 272560 178 637000050 7247 5728 2 0 NC_006350, NC_006351, BX571965, BX571966 NCBI, Sanger Institute Sanger Institute, Porton Down Beowulf Genomics PNAS 101, 14240-5 September 13, 2004 Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus licheniformis BACTERIAL Bacillus licheniformis DSM13 Novozymes 29491 ATCC 14580 Genome FIRMICUTES Complete complete Facultative, Sporulating, Motile, Rod-shaped, Pathogen, Subtilisin production, Amylase production, Mesophile Biotechnological, Medical, Human Pathogen Food poisoning Soil International 46.2 Public Gc00213 000397_GCAT 279010 12388 639279304 4222 4152 1 0 NC_006270, CP000002 NCBI, BASCAP Novozymes Biotech Inc., INRA, AstraZeneca Genome Biology 5, R77 September 13, 2004 Berka RM ramb@novozymes.com Bacteria Firmicutes Lactobacillales unclassified Symbiobacterium Symbiobacterium thermophilum BACTERIAL Symbiobacterium thermophilum IAM 14863 278989 Genome FIRMICUTES Complete complete Thermophile, Symbiont, Rod-shaped, Nonmotile, Nonsporulating Biotechnological None Soil 60 Japan 68.7 Public Gc00212 000398_GCAT 292459 12994 637000306 3566 3337 1 0 NC_006177, AP006840 NCBI Nihon Univ, Kitasato Univ, NIID JSPS Nucleic Acids Res 32, 4937-44 September 7, 2004 Ueda K ueda@brs.nihon-u.ac.jp Bacteria Spirochaetes Spirochaetales Spirochaetaceae Borrelia Borrelia garinii BACTERIAL Borrelia garinii PBi, OspA 4 Genome SPIROCHAETES Complete complete Motile, Pathogen, Spiral-shaped, Aerobe, Microaerophilic, Mesophile Medical, Human Pathogen Lyme disease Host Cerebrospinal fluid of a patient with neuroborreliosis in Germany Germany 28 Public Gc00211 000399_GCAT 290434 12554 637000037 904 832 1 2 NC_006156, CP000013 NCBI, SGB IMB, Jena NAR 32, 6038-6046 August 30, 2004 Glockner G gernot@imb-jena.de Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pseudotuberculosis BACTERIAL Yersinia pseudotuberculosis IP32953 I Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Facultative, Rod-shaped, Motile, Mesophile Medical, Swine Pathogen, Animal Pathogen Gastroenteritis, Food poisoning Soil, Aquatic, Host 28 - 30 International 47.6 Public Gc00210 000400_GCAT 273123 12950 637000355 4744 3901 1 2 NC_006155, AE008692 NCBI, LLNL Lawrence Livermore National Lab, Institut Pasteur DOE PNAS 101, 13826-31 August 30, 2004 Lamerdin J lamerdin1@llnl.gov Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma hyopneumoniae BACTERIAL Mycoplasma hyopneumoniae 232 Genome FIRMICUTES Complete complete Pathogen, Nonmotile, Facultative, Mesophile Medical, Swine Pathogen, Animal Pathogen Porcine enzootic pneumonia, Pneumonia Host 37 USA 28.6 Public Gc00209 000401_GCAT 295358 13120 637000177 892 691 1 0 NC_006360, AE017332 NCBI, Iowa State Univ, Univ of Alabama, Molligen Iowa State Univ, Univ of Washington ARC, Bioproperties Pty. Ltd J Bacteriology 186, 7123-33 August 30, 2004 Minion C http://mycoplasmas.vm.iastate.edu/lab_site/ Bacteria Proteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia typhi BACTERIAL Rickettsia typhi Wilmington 621685 Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Aerobe, Nonmotile, Nonsporulating, Obligate parasite, Mesophile Medical, Human Pathogen, Animal Pathogen Typhus Host USA 28.9 Public Gc00208 000402_GCAT 257363 10679 637000246 1111 838 1 0 NC_006142, AE017197 NCBI, BCM-HGSC Univ of Texas, BCM-HGSC NIH-NIAID J Bacteriology 186, 5842-55 August 20, 2004 Weinstock , GM gwstock@bcm.tmc.edu Bacteria Proteobacteria Desulfobacterales Desulfobulbaceae Desulfotalea Desulfotalea psychrophila BACTERIAL Desulfotalea psychrophila LSv54 163127 DSM 12343 Genome PROTEOBACTERIA-DELTA Complete complete Sulfate reducer, Psychrophile, Carbon cycle, Sulfur cycle, Rod-shaped, Anaerobe Biotechnological, Environmental None Marine, Sediment 10 Marine sediments off of the coast of Svalbard Germany 46.6 Public Gc00207 000023_GCAT 177439 12751 637000094 3523 3116 1 2 NC_006138, CR522870 NCBI, REGX Epidauros Biotechnologie AG, REGX BMBF Environ. Microbiol. 6, 887-902 August 16, 2004 Amann R ramann@mpi-bremen.de Bacteria Actinobacteria Actinomycetales Microbacteriaceae Leifsonia Leifsonia xyli BACTERIAL Leifsonia xyli xyli CTCB07 Genome ACTINOBACTERIA Complete complete Pathogen, Rod-shaped, Nonmotile, Aerobe, Mesophile Agricultural, Plant Pathogen Ratoon stunting Host 20 - 25 Brazil 67.7 Public Gc00206 000404_GCAT 281090 212 637000149 2584 2030 1 0 NC_006087, AE016822 NCBI, UNICAMP Univ of Campinas FAPESP Mol. Plant Microbe Interact 17, 827-836 August 4, 2004 Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes M6 MGAS10394 M6 493416 Genome FIRMICUTES Complete complete Pathogen, Facultative, Nonmotile, Nonsporulating, Flesh eating bacteria, Coccus-shaped, Mesophile Medical, Human Pathogen Rheumatic fever, Pharyngitis, Tonsillitis Host, Nasopharyngeal microflora 35 USA 38.6 Public Gc00205 000405_GCAT 286636 12469 637000293 1899 1886 1 0 NC_006086, CP000003 NCBI RML-NIAID NIH J. Infect. Dis. 190, 727-738 August 3, 2004 Musser JM http://www.niaid.nih.gov/dir/labs/lhbp/musser.htm Bacteria Actinobacteria Actinomycetales Propionibacteriaceae Propionibacterium Propionibacterium acnes BACTERIAL Propionibacterium acnes KPA171202 681597 DSM 16379 Genome ACTINOBACTERIA Complete complete Anaerobe, Nonsporulating, Pathogen, Rod-shaped, Nonmotile, Mesophile Medical, Human Pathogen Acne Host, Human skin 37 Human skin Germany 60 Public Gc00204 000406_GCAT 267747 12460 637000215 2560 2297 1 0 NC_006085, AE017283 NCBI, Entrez Goettingen Genomics Laboratory, Univ of Ulm BMBF Science 305, 671-673 July 30, 2004 Gottschalk, G ggottsc@gwdg.de Bacteria Firmicutes Entomoplasmatales Entomoplasmataceae Mesoplasma Mesoplasma florum BACTERIAL Mesoplasma florum L1 267441 ATCC 33453 Genome FIRMICUTES Complete complete Non-Pathogen, Nonmotile, Nonsporulating, Facultative, Parasite, Mesophile Evolutionary None Host 20 - 40 USA 27 Public Gc00203 000407_GCAT 265311 10650 637000158 793 682 1 0 NC_006055, AE017263 NCBI, Broad Institute, Molligen Broad Institute Unpublished July 19, 2004 Broad Institute annotation-info@broad.mit.edu Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Pectobacterium Pectobacterium atrosepticum BACTERIAL Erwinia carotovora atroseptica SCRI1043 494319 ATCC BAA-672 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Facultative, Motile, Blackleg, Rod-shaped, Mesophile Agricultural, Plant Pathogen Soft rot Host 27 - 30 United Kingdom 51 Public Gc00202 000408_GCAT 218491 350 637000102 5064 4449 1 0 NC_004547 NCBI, Sanger Institute, Scottish Crop Research Institute Sanger Institute, Scottish Crop Research Institute, Univ of Cambridge The Scottish Office PNAS 101, 11105-10 July 9, 2004 Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter sp. ADP1 BACTERIAL Acinetobacter calcoaceticus ADP1 681508 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Aerobe, Nonmotile, Heterotroph, Chemoheterotroph, Nonsporulating, Coccus-shaped, Mesophile Medical, Human Pathogen Nosocomial infection Soil, Aquatic, Food, Human skin 37 Derivatove of BD413 France 40.4 Public Gc00201 000409_GCAT 62977 12352 637000002 3598 3325 1 0 NC_005966, CR543861 NCBI, Genoscope, Superfamily Genoscope Genoscope NAR 32, 5766-5779 July 9, 2004 Barbe V vbarbe@genoscope.cns.fr Eukaryota Ascomycota Saccharomycetales unclassified Candida Candida glabrata EUKARYAL Candida glabrata CBS 138 ABI 8x 93937 Genome FUNGI-ASCOMYCOTA Complete complete Pathogen, Mesophile Medical, Human Pathogen Human candidasis France Public Gc00200 000410_GCAT 284593 12381 638208603 12280 5397 13 0 NC_005967-8, NC_006026-36 NCBI, Institut Pasteur, Genolevures, Integr8 Institut Pasteur, Genoscope Genoscope, Institut Pasteur Nature 430, 35-44 July 1, 2004 Thierry A athierry@pasteur.fr Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Debaryomyces Debaryomyces hansenii EUKARYAL Debaryomyces hansenii var. hansenii CBS767 ABI 9.7x 120222 Genome FUNGI-ASCOMYCOTA Quality Draft complete Halotolerant, Non-Pathogen, Mesophile Biotechnological, Food industry, Cheese ripening None Aquatic France 36 Public Gc00199 000411_GCAT 284592 13832 638208605 12200 6906 7 0 NC_006043-49 NCBI, Genolevures, PEDANT INRA, Genoscope Genoscope Nature 430, 35-44 July 1, 2004 Casaregola S serge@grignon.inra.fr Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Kluyveromyces Kluyveromyces lactis EUKARYAL Kluyveromyces lactis NRRL Y-1140 ABI 11.4x 194089 Genome FUNGI-ASCOMYCOTA Quality Draft complete Mesophile Biotechnological None France 38 Public Gc00198 000412_GCAT 284590 13835 638208608 10686 5327 6 0 NC_006037-42 NCBI, PEDANT, Genolevures Univ Claude Bernard, Genoscope Genoscope Nature 430, 35-44 July 1, 2004 Wezolowski M louvel@univ-lyon1.fr Eukaryota Ascomycota Saccharomycetales Dipodascaceae Yarrowia Yarrowia lipolytica EUKARYAL Yarrowia lipolytica CLIB122 ABI 10x Genome FUNGI-ASCOMYCOTA Quality Draft complete Mesophile Biotechnological, Citric acid production None Food, Oil fields France 49 Public Gc00197 000413_GCAT 284591 13837 638208611 20502 6666 6 0 NC_006067-72 NCBI, Genolevures, PEDANT INRA, Genoscope Genoscope Nature 430, 35-44 July 1, 2004 Gaillardin C claude@grignon.inra.fr Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus thuringiensis BACTERIAL Bacillus thuringiensis konkukian 97-27 H34 Genome FIRMICUTES Complete complete Pathogen, Facultative, Sporulating, Motile, Rod-shaped, Mesophile Insect Pathogen, Biotechnological, Agricultural Sotto disease Host, Soil Severe human tissue necrosis USA 35.4 Public Gc00196 000414_GCAT 281309 10877 637000023 5237 5117 1 1 NC_005957, AE017355 NCBI Joint Genome Institute, Los Alamos National Laboratory DOE J. Bacteriology 188, 3382-3390 June 30, 2004 Gilna P pgil@lanl.gov Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis Sterne 322641 Genome FIRMICUTES Complete complete Facultative, Sporulating, Motile, Non-Pathogen, Rod-shaped, Mesophile Medical None Soil USA 35.4 Public Gc00195 000415_GCAT 260799 10878 637000015 5228 5287 1 1 NC_005945, AE017225 NCBI, Entrez Joint Genome Institute, Los Alamos National Laboratory DOE Unpublished June 24, 2004 Gilna P pgil@lanl.gov Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus MSSA476 Genome FIRMICUTES Complete complete Pathogen, Facultative, Coccus-shaped, Nonsporulating, Nonmotile, Mesophile Medical, Human Pathogen, Animal Pathogen, Cattle Pathogen, Poultry Pathogen Toxic-shock syndrome, Staphylococcal scarlet fever Host 30 - 37 United Kingdom 37 Public Gc00194 000416_GCAT 282459 266 637000275 2799 2579 1 1 NC_002953 NCBI, Sanger Institute Sanger Institute, Trinity College, Dublin, Univ of Bath Beowulf Genomics PNAS 101, 9786-91 June 22, 2004 Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus MRSA252 Genome FIRMICUTES Complete complete Pathogen, Facultative, Coccus-shaped, Nonsporulating, Nonmotile, Mesophile Medical, Human Pathogen, Animal Pathogen, Cattle Pathogen, Poultry Pathogen Toxic-shock syndrome, Staphylococcal scarlet fever Host 30 - 37 United Kingdom 37 Public Gc00193 000417_GCAT 282458 265 637000274 2902 2634 1 0 NC_002952 NCBI, Sanger Institute Sanger Institute, Trinity College, Dublin, Univ of Bath Beowulf Genomics PNAS 101, 9786-91 June 22, 2004 Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Rhizobiales Bartonellaceae Bartonella Bartonella henselae BACTERIAL Bartonella henselae Houston-1 114970 ATCC 49882 Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Intracellular, Rod-shaped, Aerobe, Mesophile Medical, Human Pathogen, Animal Pathogen Bacillary angiomatosis Host 37 Sweden 38.2 Public Gc00192 000418_GCAT 283166 196 637000027 1931 1488 1 0 NC_005956, BX897699 NCBI, Univ of Uppsala Univ of Uppsala SSF PNAS 101, 9716-21 June 21, 2004 Andersson S http://web1.ebc.uu.se/molev/staff/siv.html Bacteria Proteobacteria Rhizobiales Bartonellaceae Bartonella Bartonella quintana BACTERIAL Bartonella quintana Toulouse Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Rod-shaped, Aerobe, Intracellular, Nonsporulating, Mesophile Medical, Human Pathogen Bacillary angiomatosis, Endocarditis, Trench fever Gut of the body louse, Host 37 Sweden 38.8 Public Gc00191 000419_GCAT 283165 44 637000028 1581 1142 1 0 NC_005955, BX897700 NCBI, Univ of Uppsala Univ of Uppsala SSF PNAS 101, 9716-21 June 21, 2004 Andersson S http://web1.ebc.uu.se/molev/staff/siv.html Archaea Euryarchaeota Thermoplasmatales Picrophilaceae Picrophilus Picrophilus torridus ARCHAEAL Picrophilus torridus DSM 9790 117420 ATCC 700027 Genome EURYARCHAEOTA-THERMOPLASMATA Complete complete Acidophile, Thermophile, Aerobe, Heterotroph, Coccus-shaped Biotechnological None Soil 0.7 60 Germany 36 Public Gc00190 000420_GCAT 263820 10641 638154512 1549 1535 1 0 NC_005877 NCBI, Integr8, Goettingen Genomics Laboratory GenoMik Competence Network, Goettingen Genomics Laboratory, TU Hamburg-Harburg, Georg-August-Univ Goettingen BMBF PNAS 101, 9091-6 June 7, 2004 Liebl W wliebl@gwdg.de Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis Ames Ancestor A2084 (0581) Genome FIRMICUTES Complete complete Facultative, Sporulating, Motile, Pathogen, Rod-shaped, Mesophile Medical, Human Pathogen Anthrax Soil USA 35.4 Public Gc00189 000421_GCAT 261594 10784 637000013 5227 5309 1 2 NC_007530, AE017334 NCBI TIGR ONR, DOE, NIH-NIAID Unpublished May 20, 2004 Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma mobile BACTERIAL Mycoplasma mobile 163K 303183 ATCC 43663 Genome FIRMICUTES Complete Pathogen, Nonsporulating, Motile, Facultative, Flask-shaped, Gliding, Flask-shaped, Mesophile Fish Pathogen Unknown Host 20 USA 24.9 Public Gc00188 000422_GCAT 267748 10697 637000180 777 633 1 0 NC_006908 NCBI, Broad Institute, Molligen Broad Institute Genome Res 14, 1447-61 May 18, 2004 Webmaster annotation-info@genome.wi.mit.edu Eukaryota Basidiomycota Corticiales Corticiaceae Phanerochaete Phanerochaete chrysosporium EUKARYAL Phanerochaete chrysosporium RP-78 ABI 10.5x Genome FUNGI-BASIDIOMYCOTA Quality Draft complete Aerobe, Cellulolytic, Lignin degrader, Mesophile Biotechnological, Environmental None USA Public Gc00187 000423_GCAT 273507 135 30000 10 0 AADS01000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Nature Biotechnol 22, 695-700 May 2, 2004 Rokhsar D dsrokhsar@lbl.gov Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes F2365 (cheese isolate) 4b 686331 Genome FIRMICUTES Complete complete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped, Mesophile Medical, Human Pathogen Listeriosis, Food poisoning Soil, Intestinal microflora, Food 30 - 37 During an outbreak of listeriosis aming patients with AIDS in California in 1985 USA 38 Public Gc00186 000424_GCAT 265669 85 637000154 2905 2821 1 0 NC_002973, AE017262 NCBI TIGR USDA NAR 32, 2386-95 April 28, 2004 Nelson KE http://www.tigr.org/~kenelson/ Bacteria Chlamydiae Chlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila BACTERIAL Parachlamydia (Protochlamydia) sp. (amoebophila) UWE25 Acanthamoeba sp. Genome CHLAMYDIAE Complete complete Pathogen, Intracellular, Parasite, Mesophile Medical, Human Pathogen Pneumonia Host Environmental isolate Germany 34.7 Public Gc00185 000425_GCAT 264201 10700 637000059 2414 2031 1 0 NC_005861 NCBI, Univ of Vienna, GenRE Univ of Vienna BMBF Science 304, 728-30 April 21, 2004 Horn M http://www.microbial-ecology.net/horn.asp Bacteria Proteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio vulgaris BACTERIAL Desulfovibrio vulgaris vulgaris Hildenborough 107037 ATCC 29579 Genome PROTEOBACTERIA-DELTA Complete complete Pollutant degrader, Rod-shaped, Motile, Anaerobe, Sulfate reducer, Mesophile Biotechnological, Bioremediation, Oil industry, Environmental None Soil 25 - 40 Clay soil near Hildenborough in UK in 1946 USA 63.1 Public Gc00184 000426_GCAT 882 51 637000096 3570 3379 1 1 NC_002937, AE017285 NCBI, TIGR, Entrez TIGR DOE Nat. Biotechnol. 22, 554-9 April 11, 2004 Heidelberg JF dvu@tigr.org Eukaryota unclassified Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae EUKARYAL Cyanidioschyzon merolae 10D ABI Genome PROTISTS-RHODOPHYTA Quality Draft complete Photosynthetic, Mesophile Evolutionary None Aquatic Aulphate-rich acidic hot waters Japan Public Gc00183 000427_GCAT 280699 10792 16520 5331 20 0 AP006483-AP006502 Univ of Tokyo, National Institute of Genetics, Japan Univ of Tokyo, Rikkyo Univ, Saitama Univ, Kumamoto Univ MEXT Nature 428, 653-657 April 8, 2004 Kuroiwa, T tsune@rikkyo.ne.jp Bacteria Deinococcus-Thermus Thermales Thermaceae Thermus Thermus thermophilus BACTERIAL Thermus thermophilus HB27 125622 ATCC BAA-163, DSM 7039 Genome THERMI Complete complete Thermophile, Aerobe, Nonmotile, Halotolerant Biotechnological None Aquatic, Hydrothermal vent 68 Thermal vent in Japan Germany 66.6 Public Gc00182 000428_GCAT 262724 10617 637000322 1894 1982 1 1 NC_005835 NCBI, Goettingen Genomics Laboratory Goettingen Genomics Laboratory Ministry of Lower Saxony Nature Biotechnology 22, 547-553 April 5, 2004 Henne A ahenne@g2l.bio.uni-goettingen.de Eukaryota Chordata Rodentia Muridae Rattus Rattus norvegicus EUKARYAL Rattus norvegicus BN/SsNHsdMCW ABI Genome CHORDATA-MAMMALS Quality Draft complete Mesophile Model organism None International Public Gc00181 000429_GCAT 10116 10629 639431600 2750000 21166 21 0 NC_005100-20 NCBI, NCBI-genome, BCM-HGSC, RATMAP, RGD, Max Planck Institute, TIGR BCM-HGSC, Celera Genomics, Genome Therapeutics, TIGR, CHORI, Medical College of Wisconsin, Univ of Utah, BCGSC NIH, NHGRI, NHLBI Nature 428, 493-521 April 1, 2004 Gibbs RA agibbs@bcm.tmc.edu Bacteria Spirochaetes Spirochaetales Leptospiraceae Leptospira Leptospira interrogans BACTERIAL Leptospira interrogans Copenhageni Fiocruz L1-130 Copenhageni 692513 Genome SPIROCHAETES Complete complete Pathogen, Aerobe, Motile, Spiral-shaped, Nonsporulating, Mesophile Medical, Human Pathogen, Animal Pathogen Leptospirosis Host, Soil, Aquatic 28 - 30 Patient with severe leptospirosis during an epidemic in 1996 Brazil 35 Public Gc00180 000430_GCAT 267671 10687 637000150 4277 3394 2 0 NC_005823, AE016823, AE016824 NCBI, Univ of Campinas Univ of Sao Paulo, Univ of Campinas FAPESP, CNPq J. Bacteriol 186, 2164-2172 April 1, 2004 Nascimento, ALTO tabet@usp.br Eukaryota Apicomplexa Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium parvum EUKARYAL Cryptosporidium parvum Iowa II Genome PROTISTS-APICOMPLEXA Quality Draft complete Intracellular, Parasite, Pathogen, Mesophile Medical, Human Pathogen, Animal Pathogen Diarrhea USA Public Gc00179 000431_GCAT 353152 144 639605300 16500 3807 8 0 AAEE01000000 NCBI, NCBI-2, MRC, UCSF, Univ of Minnesota UCSF, Univ of Minnesota NIH-NIAID Science 304, 441-5 March 25, 2004 Abrahamsen M http://128.101.246.6/research/mvb/faculty/abrahamsen.htm Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Microtus 91001 Microtus Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Facultative, Rod-shaped, Motile, Mesophile Medical, Human Pathogen, Biothreat, Animal Pathogen Bubonic plague Host 28 - 30 China 48 Public Gc00178 000432_GCAT 229193 10638 637000354 4595 3895 1 4 NC_005810 NCBI Institute of Microbiology and Epidemiology, China DNA Res 11, 179-97 March 15, 2004 Archaea Euryarchaeota Methanococcales Methanococcaceae Methanococcus Methanococcus maripaludis ARCHAEAL Methanococcus maripaludis S2 268749 Genome EURYARCHAEOTA-METHANOCOCCI Complete complete Methanogen, Motile, Obligate anaerobe, Nonsporulating, Hydrogenotrophic, Nitrogen fixation, Mesophile, Lithotroph, Chemolithoautotroph Biotechnological, Energy production None Aquatic, Salt marsh 6.5-8 25 - 40 Salt marsh sediment near Pawley Island South Carolina USA 33.1 Public Gc00177 000433_GCAT 267377 10632 638154506 1661 1722 1 0 NC_005791 NCBI, Univ of Washington, Entrez Univ of Washington- Seattle NIH-NIGMS J Bact 186, 6956-6969 March 11, 2004 Leigh J http://faculty.washington.edu/leighj/ Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Eremothecium Eremothecium gossypii EUKARYAL Ashbya (Eremothecium) gossypii ATCC 10895 ABI 195190 ATCC 10895 Genome FUNGI-ASCOMYCOTA Quality Draft complete Pathogen, Riboflavin production, Mesophile Agricultural, Plant Pathogen, Biotechnological International 51 Public Gc00176 000434_GCAT 33169 13834 638208607 9200 4720 7 0 NC_005782-9 NCBI, AGD, Duke Univ, Integr8 Basel Univ, Syngenta AG Science 304, 304-7 March 4, 2004 Philippsen P http://www.biozentrum.unibas.ch/Research/Appl_Microbiology/Philippsen/philippsen.html Eukaryota Arthropoda Lepidoptera Bombycidae Bombyx Bombyx mori EUKARYAL Bombyx mori p50T ABI 3x Genome ARTHROPODA Quality Draft complete Mesophile Biotechnological, Protein production None Japan Public Gc00175 000435_GCAT 7091 12259 530000 28 0 BAAB00000000 NCBI, SGP, SilkBase, Lep-Genome, Sputnik NIAS, Japan, Univ of Tokyo DNA Research 11, 27-35 February 29, 2004 Mita K kmita@nias.affrc.go.jp Bacteria Spirochaetes Spirochaetales Spirochaetaceae Treponema Treponema denticola BACTERIAL Treponema denticola ATTC35405 110659 ATTC 35405, DSM 14222 Genome SPIROCHAETES Complete complete Pathogen, Anaerobe, Spiral-shaped, Motile, Nonsporulating, Mesophile Medical, Human Pathogen, Dental Pathogen Periodontal infection Host 6.5-8 30 - 42 USA 37.9 Public Gc00174 000436_GCAT 243275 4 637000327 2843 2767 1 0 NC_002967 NCBI, BCM-HGSC, TIGR, LANL TIGR, Univ of Texas, BCM-HGSC NIH-NIDCR PNAS 101, 5646-51 February 12, 2004 Paulsen IT ipaulsen@tigr.org Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus ATCC 10987 95588 ATCC 10987 Genome FIRMICUTES Complete complete Pathogen, Aerobe, Facultative, Motile, Sporulating, Dairy isolate, Rod-shaped, Mesophile Medical, Biothreat, Human Pathogen Food poisoning Soil 25 - 32 Cheese spoilage in Canada USA 38 Public Gc00173 000437_GCAT 222523 74 637000016 5224 5603 1 1 NC_003909, AE017194 NCBI, Entrez TIGR ONR, NIH-NIAID NAR 32, 977-988 February 11, 2004 Read T ReadT@NMRC.NAVY.MIL Bacteria Proteobacteria Rickettsiales Rickettsiaceae Wolbachia Wolbachia endosymbiont of Drosophila melanogaster BACTERIAL Wolbachia pipientis wMel Genome PROTEOBACTERIA-ALPHA Complete complete Insect endosymbiont, Endosymbiont, Aerobe, Mesophile Biotechnological None Host USA 35.2 Public Gc00172 000438_GCAT 163164 272 637000339 1267 1195 1 0 NC_002978 NCBI TIGR NIH-NIAID PLoS Biology 2, 327-341 February 11, 2004 Eisen JA http://www.tigr.org/~jeisen/ Bacteria Firmicutes Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus johnsonii BACTERIAL Lactobacillus johnsonii NCC533 NCC 533 Genome FIRMICUTES Complete complete Probiotic, Facultative, Rod-shaped, Nonmotile, Mesophile Biotechnological, Food industry None Intestinal microflora, Host 25 - 35 Human isolate from the Nestle strain collection International 34.6 Public Gc00171 000439_GCAT 257314 9638 637000140 1992 1821 1 0 NC_005362, AE017198 NCBI Nestle, North Carolina State Univ, Univ of Georgia Nestle PNAS 101, 2512-7 February 11, 2004 Pridmore RD raymond-david.pridmore@rdls.nestle.com Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma mycoides BACTERIAL Mycoplasma mycoides mycoides SC PG1T Genome FIRMICUTES Complete complete Pathogen, BCPP, Nonmotile, Facultative, Mesophile Medical, Cattle Pathogen, Animal Pathogen Pleuropneumonia, Respiratory infection Host 37 European Consortium 24 Public Gc00170 000440_GCAT 272632 10616 637000181 1211 1016 1 0 NC_005364 NCBI, Royal Institute of Technology, Stockholm, GenDB-Bielefeld Univ, Molligen Royal Institute of Technology, Stockholm, National Veterinary Inst, Uppsala, Bielefeld Univ SSF Genome Res 14, 221-227 February 3, 2004 Uhlen M mathias@biotech.kth.se Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium avium BACTERIAL Mycobacterium avium paratuberculosis K-10 501468 Genome ACTINOBACTERIA Complete complete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile, Nonsporulating, Mesophile Medical, Animal Pathogen, Cattle Pathogen Johne's disease, Paratuberculosis, Enteritis Host 37 Diary herd in Wisconsin in the 1970's USA 69.3 Public Gc00169 000441_GCAT 262316 91 637000168 4829 4350 1 0 NC_002944, AE016958 NCBI, Univ of Minnesota Univ of Minnesota USDA, Univ of Minnesota Agriculural Experiment Station PNAS 102, 12344-9 January 30, 2004 Kapur V http://www.cvm.umn.edu/departments/vpb/faculty/kapur.htm Bacteria Proteobacteria Bdellovibrionales Bdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus BACTERIAL Bdellovibrio bacteriovorus HD100 268907 ATCC 15356, DSM 50701 Genome PROTEOBACTERIA-DELTA Complete complete Motile, Bacteriolytic, Ectoparasite, Predatory, Aerobe, Curved-shaped, Nonsporulating, Mesophile Biotechnological, Medical, Bacterial Pathogen Cell lysis Soil, Aquatic 28 - 30 Germany 50.6 Public Gc00168 000442_GCAT 264462 9637 637000030 3782 3587 1 0 NC_005363, BX842601 NCBI, Max Planck Institute Max Planck Institute Wellcome Trust, BBSRC Science 303, 689-682 January 30, 2004 Schuster SC http://www.eb.tuebingen.mpg.de/schuster/staff_schuster.htm Bacteria Firmicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Onion yellows phytoplasma BACTERIAL Phytoplasma asteris OY-M Genome FIRMICUTES Complete complete Pathogen, Aerobe, Obligate parasite, Mesophile Agricultural, Plant Pathogen Onions yellow Host Saga Prefecture Japan in 1982 Japan 27.7 Public Gc00167 000443_GCAT 262768 9615 637000202 860 754 1 0 NC_005303 NCBI, Molligen Univ of Tokyo Nature Genetics 36, 27-9 December 16, 2003 Namba, S snamba@ims.u-tokyo.ac.jp Bacteria Proteobacteria Desulfuromonadales Geobacteraceae Geobacter Geobacter sulfurreducens BACTERIAL Geobacter sulfurreducens PCA 163030 ATCC 51573 Genome PROTEOBACTERIA-DELTA Complete complete Toxic metal reducer, Rod-shaped, Motile, Anaerobe, Mesophile, Chemolithotroph Biotechnological, Bioremediation, Generates electricity, Environmental None Soil, Sediment 30 Surface sediments of a hydrocarbon-contaminated ditch in Norman Oklahoma USA 60.9 Public Gc00166 000444_GCAT 243231 192 637000120 3814 3446 1 0 NC_002939, AE017180 NCBI, Lovley Lab, Geobacter.org, Entrez TIGR, Univ of Massachusetts DOE Science 302, 1967-1969 December 14, 2003 Methe BA bmethe@tigr.org Bacteria Proteobacteria Rhizobiales Bradyrhizobiaceae Rhodopseudomonas Rhodopseudomonas palustris BACTERIAL Rhodopseudomonas palustris CGA009 118953 ATCC BAA-98 Genome PROTEOBACTERIA-ALPHA Complete complete Carbon dioxide fixation, Rod-shaped, Motile, Facultative, Pollutant degrader, Mesophile Biotechnological, Hydrogen production, Energy production None Soil, Aquatic 25 - 35 USA 65 Public Gc00165 000445_GCAT 258594 57 637000239 5459 4813 1 1 NC_005296 NCBI, Joint Genome Institute, IMG, report Joint Genome Institute, Institute of Molecular Genetics, Prague DOE Nat Biotechnol 22, 55-61 December 14, 2003 Stilwagen S stilwagen1@llnl.gov Eukaryota Nematoda Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae EUKARYAL Caenorhabditis briggsae AF16 ABI 10x Genome NEMATODES Quality Draft complete Mesophile International Public Gc00164 000446_GCAT 6238 157 104000 19507 6 0 CAAC00000000 NCBI, Washington Univ, Sanger Institute, WormBase, NematodeNet Washington Univ, Sanger Institute, Cold Spring Harbor Laboratory NIH, NSF, Wellcome Trust PLoS Biology 1, 166-192 November 17, 2003 Stein L lstein@cshl.org Bacteria Actinobacteria Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium diphtheriae BACTERIAL Corynebacterium diphtheriae gravis NCTC 13129 gravis 118780 NCTC 13129 Genome ACTINOBACTERIA Complete complete Pathogen, Facultative, Nonmotile, Rod-shaped, Nonsporulating, Mesophile Medical, Human Pathogen Diphtheria, Respiratory infection Host Pharyngeal membrane of a 72-year-old unimmunized UK female with clinical diphtheria acquired during a short Baltic cruise in 1997 United Kingdom 53.5 Public Gc00163 000447_GCAT 257309 87 637000082 2488 2272 1 0 NC_002935, BX248353 NCBI, Sanger Institute, Entrez Sanger Institute, PHLS Beowulf Genomics NAR 31, 6516-6523 November 15, 2003 Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Archaea Nanoarchaeota unclassified unclassified Nanoarchaeum Nanoarchaeum equitans ARCHAEAL Nanoarchaeum equitans Kin4-M Ignicoccus Genome NANOARCHAEOTA Complete complete Anaerobe, Hyperthermophile, Symbiont Biotechnological None Marine, Hydrothermal vent Submarine hot vent USA 31.6 Public Gc00162 000448_GCAT 228908 9599 638154511 490 536 1 0 NC_005213 NCBI, Integr8 Diversa, Celera Genomics Diversa PNAS 100, 12984-8 October 28, 2003 Noordewier M mick@diversa.com Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio vulnificus BACTERIAL Vibrio vulnificus YJ016 379912 Genome PROTEOBACTERIA-GAMMA Complete complete Facultative, Pathogen, Heterotroph, Rod-shaped, Motile, Halophile, Mesophile Medical, Fish Pathogen Gastroenteritis, Septicemia, Food poisoning Aquatic 20 - 30 Hospital isolate from Taiwan Taiwan 46.8 Public Gc00161 000449_GCAT 196600 1430 637000337 5211 4955 2 0 NC_005139, NC_005140 NCBI_1, NCBI_2, NHRI, Yang-Ming Univ, Taiwan Yang-Ming Univ, Taiwan NHRI Genome Res 13, 2577-87 October 15, 2003 Shih-Feng Tsai petsai@nhri.org.tw Bacteria Cyanobacteria Gloeobacterales unclassified Gloeobacter Gloeobacter violaceus BACTERIAL Gloeobacter violaceus PCC 7421 106390 Genome CYANOBACTERIA Complete complete Photosynthetic, Rod-shaped, Photoautotroph, Mesophile Biotechnological, Evolutionary None Soil, Aquatic Calcereous rock in Switzerland Japan 62 Public Gc00160 000450_GCAT 251221 9606 637000121 4659 4430 1 0 NC_005125 NCBI, Kazusa, Entrez Kazusa DNA Research Institute KDRI DNA Res 10, 137-145 October 6, 2003 Tabata S tabata@kazusa.or.jp Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Photorhabdus Photorhabdus luminescens BACTERIAL Photorhabdus luminescens laumondii TT01 303432 Heterorhabditis bacteriophora Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Symbiont, Rod-shaped, Motile, Facultative Medical, Insect Pathogen, Biotechnological Toxemia, Septicemia Host Isolated on Trinidad and Tobago France 42.8 Public Gc00159 000451_GCAT 243265 9605 637000207 5688 4683 1 0 NC_005126 NCBI, PhotoList, Institut Pasteur Institut Pasteur Institut Pasteur, INRA, CNRS Nature Biotech 21, 1307-1313 October 5, 2003 Kunst F fkunst@pasteur.fr Bacteria Proteobacteria Campylobacterales Helicobacteraceae Wolinella Wolinella succinogenes BACTERIAL Wolinella succinogenes DSM 1740 54181 Genome PROTEOBACTERIA-EPSILON Complete complete Non-Pathogen, Anaerobe, Motile, Spiral-shaped, Mesophile Medical None Host, Rumen Rumen of a cow Germany 48.5 Public Gc00158 000452_GCAT 273121 445 637000341 2110 2043 1 0 NC_005090 NCBI, Max Planck Institute, NIG Max Planck Institute PNAS 100, 11690-5 September 30, 2003 Schuster SC stephan.schuster@tuebingen.mpg.de Bacteria Proteobacteria Neisseriales Neisseriaceae Chromobacterium Chromobacterium violaceum BACTERIAL Chromobacterium violaceum ATCC 12472 6971 ATCC 12472 Genome PROTEOBACTERIA-BETA Complete complete Pathogen, Motile, Facultative, Sphere-shaped, Nonsporulating, Volacein producer, Mesophile Medical, Human Pathogen, Antibiotic production, Biotechnological, Energy production Diarrhea, Septicemia Soil, Aquatic, Host 25 Brazil 64.8 Public Gc00157 000453_GCAT 243365 444 637000074 4751 4407 1 0 NC_005085, AE016825 NCBI, Brazilian Genome Brazilian Genome CNPq, MCT PNAS 100, 11660-5 September 18, 2003 Simpson AJG asimpson@node1.com.br Bacteria Bacteroidetes Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas gingivalis BACTERIAL Porphyromonas gingivalis W83 494669 Genome BACTEROIDETES Complete complete Pathogen, Nonmotile, Rod-shaped, Anaerobe, Nonsporulating, Mesophile Medical, Human Pathogen Periodontal infection, Dental plaque Host, Oral microflora, Gastrointestinal tract, Respiratory tract, Colon 37 USA 48.3 Public Gc00156 000454_GCAT 242619 48 637000209 2343 1909 1 0 NC_002950 NCBI, FDC, LANL, TIGR TIGR, Forsyth Dental Center NIH-NIDR J. Bacteriol 185, 5591-5601 September 9, 2003 Nelson KE kenelson@tigr.org Bacteria Actinobacteria Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium glutamicum BACTERIAL Corynebacterium glutamicum Kalinowski 681596 ATCC 13032, DSM 20300 Genome ACTINOBACTERIA Complete complete Rod-shaped, Nonmotile, Facultative, Nonsporulating, Fast growing, Mesophile Biotechnological, Amino acids production, Food industry, Glutamate production None Soil, Normal microflora Germany 53.8 Public Gc00155 000455_GCAT 196627 13760 639279306 3282 3002 1 0 NC_006958, BX927147 NCBI Bielefeld Univ, Degussa BMBF J Biotechnol 104, 5-25 September 4, 2003 Kalinowski J joern.kalinowski@genetik.uni-bielefeld.de Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 BACTERIAL Pseudomonas syringae tomato DC3000 tomato 493307 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Aerobe, Motile, Rod-shaped, Endophyte, Nonsporulating, Mesophile, Heterotroph Agricultural, Plant Pathogen Plant rot, Speck disease Host, Soil, Aquatic USA 58.4 Public Gc00154 000456_GCAT 223283 359 637000225 6397 5470 1 2 NC_004578 NCBI, Cornell Univ, TIGR, Pseudomonas Genome DBase Cornell Univ, Univ of Nebraska, Univ of Missouri, TIGR, Kansas State Univ NSF PNAS 100, 10181-6 September 2, 2003 Buell R rbuell@tigr.org Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma gallisepticum BACTERIAL Mycoplasma gallisepticum R Genome FIRMICUTES Complete complete Pathogen, Motile, Nonsporulating, Facultative, Mesophile Medical, Food industry, Poultry Pathogen, Animal Pathogen Respiratory infection Host 37 USA 31.5 Public Gc00153 000457_GCAT 233150 409 637000175 996 726 1 0 NC_004829 NCBI, Molligen Univ of Connecticut Microbiology 149, 2307-2316 September 1, 2003 Geary S.J http://cevr.uconn.edu/geary.html Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus pastoris CCMP1986 (MED4) 527925 Genome CYANOBACTERIA Complete complete Ocean carbon cycle, Photosynthetic, Nonmotile, Oval-shaped, High-light adapted, Mesophile Biotechnological, Environmental None Marine USA 30.8 Public Gc00152 000458_GCAT 59919 213 637000214 1657 1717 1 0 NC_005072 NCBI, Joint Genome Institute, ORNL, Kazusa Joint Genome Institute DOE Nature 424, 1042-7 August 13, 2003 Chisholm SW chisholm@mit.edu Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus MIT9313 Genome CYANOBACTERIA Complete complete Ocean carbon cycle, Photosynthetic, Nonmotile, Low light adapted, Oval-shaped, Mesophile Biotechnological, Environmental None Marine USA 50.7 Public Gc00151 000459_GCAT 74547 220 637000211 2410 2269 1 0 NC_005071 NCBI, Joint Genome Institute, Kazusa Joint Genome Institute DOE Nature 424, 1042-7 August 13, 2003 Chisholm SW chisholm@mit.edu Bacteria Cyanobacteria Chroococcales unclassified Synechococcus Synechococcus sp. WH 8102 BACTERIAL Prochlorococcus (Synechococcus) sp. WH8102 528814 Genome CYANOBACTERIA Complete complete Photosynthetic, Ocean carbon cycle, Motile, Coccus-shaped, Mesophile, Photoautotroph Biotechnological, Environmental None Marine Tropical Atlantic ocean in 1981 USA 59.4 Public Gc00150 000460_GCAT 84588 230 637000314 2434 2519 1 0 NC_005070 NCBI, Joint Genome Institute, Kazusa Joint Genome Institute, Scripps Institute of Oceanography DOE Nature 424, 1037-42 August 13, 2003 Palenik B bpalenik@ucsd.edu Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus marinus CCMP1375 (SS120) 278949 Genome CYANOBACTERIA Complete complete Ocean carbon cycle, Photosynthetic, Nonmotile, Very low light adapted, Oval-shaped, Mesophile Biotechnological, Environmental None Marine France 36.4 Public Gc00149 000461_GCAT 167539 419 637000213 1751 1883 1 0 NC_005042 NCBI, Station Biologique de Roscoff, Genoscope, Kazusa Genoscope European Union PNAS 100, 10020-5 August 13, 2003 Partensky F partensky@sb-roscoff Bacteria Proteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella bronchiseptica BACTERIAL Bordetella bronchiseptica RB50 494021 ATCC BAA-588, NCTC-13252 Genome PROTEOBACTERIA-BETA Complete complete Pathogen, Obligate aerobe, Rod-shaped, Motile, Mesophile Medical, Animal Pathogen Respiratory infection Host 35 - 37 Rabbit United Kingdom 68.1 Public Gc00148 000462_GCAT 257310 24 637000032 5338 4994 1 0 NC_002927, BX470250 NCBI, Sanger Institute, Entrez Sanger Institute, Univ of Cambridge Beowulf Genomics Nature Genetics 35, 32-40 August 10, 2003 Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella parapertussis BACTERIAL Bordetella parapertussis 12822 494019 ATCC BAA-587, NCTC-13253 Genome PROTEOBACTERIA-BETA Complete complete Pathogen, Obligate aerobe, Motile, Rod-shaped, Mesophile Medical, Human Pathogen, Animal Pathogen Respiratory infection Host 35 - 37 Infected infant in Germany in 1993 United Kingdom 68.1 Public Gc00147 000463_GCAT 257311 25 637000033 4773 4185 1 0 NC_002928, BX470249 NCBI, Sanger Institute Sanger Institute, Univ of Cambridge Beowulf Genomics Nature Genetics 35, 32-40 August 10, 2003 Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella pertussis BACTERIAL Bordetella pertussis Tohama I 494022 ATCC BAA-589, NCTC-13251 Genome PROTEOBACTERIA-BETA Complete complete Pathogen, Rod-shaped, Aerobe, Motile, Mesophile Medical, Human Pathogen strictly Respiratory infection Host 35 - 37 Patient with whooping cough United Kingdom 67.7 Public Gc00146 000464_GCAT 257313 26 637000034 4086 3436 1 0 NC_002929, BX470248 NCBI, Sanger Institute, MDS Sanger Institute, Univ of Cambridge Beowulf Genomics Nature Genetics 35, 32-40 August 10, 2003 Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Candidatus Blochmannia Candidatus Blochmannia floridanus BACTERIAL Blochmannia floridanus Camponotus floridanus Genome PROTEOBACTERIA-GAMMA Complete complete Insect endosymbiont, Endosymbiont, Rod-shaped, Mesophile Biotechnological, Pest control None Host, Bacteriocytes 30 Spain 27.4 Public Gc00145 000465_GCAT 203907 443 637000056 705 583 1 0 NC_005061, BX248583 NCBI Univ of Valencia MEC, EU PNAS 100, 9388-93 August 5, 2003 Moya A andres.moya@uv.es Bacteria Actinobacteria Actinomycetales Cellulomonadaceae Tropheryma Tropheryma whipplei BACTERIAL Tropheryma whipplei Twist 304207 Genome ACTINOBACTERIA Complete complete Pathogen, Rod-shaped, Nonmotile, Aerobe, Mesophile Medical, Human Pathogen Whipple's disease Host 37 France 46.3 Public Gc00144 000466_GCAT 203267 95 637000331 927 808 1 0 NC_004572 NCBI, Genoscope Genoscope, CNRS Genome Res 13, 1800-1809 August 1, 2003 Raoult D Didier.Raoult@medecine.univ-mrs.fr Bacteria Chlamydiae Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila pneumoniae BACTERIAL Chlamydophila pneumoniae TW-183 302230 Genome CHLAMYDIAE Complete complete Intracellular, Parasite, Pathogen, Rod-shaped, Mesophile Medical, Human Pathogen Pharyngitis, Bronchitis, Pneumonia, Heart disease, Respiratory infection Host 37 In 1965 from a child?s conjunctiva during a trachoma vaccine trial in Taiwan USA 40.6 Public Gc00143 000467_GCAT 182082 420 637000071 1225 1113 1 0 NC_005043, AE009440 NCBI ALTANA Pharmaceuticals ALTANA Pharmaceuticals Unpublished July 25, 2003 Melchers K klaus.melchers@byk.de Bacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus ducreyi BACTERIAL Haemophilus ducreyi 35000HP 328755 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Rod-shaped, Anaerobe, Nonmotile, Mesophile Medical, Human Pathogen Genital ulcer, Chancroid Host USA 38.2 Public Gc00142 000468_GCAT 233412 38 637000124 1698 1717 1 0 NC_002940, AE017143 NCBI, Microbial-pathogenesis, Entrez The Institute for Systems Biology, CRI, Ohio State Univ NIH-NIAID Unpublished July 23, 2003 Munson RS http://www.med.ohio-state.edu/medmicro/pages/rsmunson.htm Bacteria Planctomycetes Planctomycetales Planctomycetaceae Rhodopirellula Rhodopirellula baltica BACTERIAL Rhodopirellula (Pirellula) baltica (sp.) SH 1 381524 DSM 10527 Genome PLANCTOMYCETES Complete complete Aerobe, Heterotroph, Motile, Nonsporulating, Sphere-shaped, Mesophile Biotechnological, Environmental None Marine 28 Kieler Bucht (a fiord near the city of Kiel in Germany) Germany 55.4 Public Gc00141 000022_GCAT 243090 413 637000236 7145 7325 1 0 NC_005027 NCBI, REGX, Max Planck Institute Max Planck Institute, REGX BMBF PNAS 100, 8298-303 July 8, 2003 Gloeckner FO http://www.mpi-bremen.de/molecol/fog/index.html Bacteria Actinobacteria Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium efficiens BACTERIAL Corynebacterium efficiens YS-314T 291608 DSM 44549 Genome ACTINOBACTERIA Complete complete Rod-shaped, Nonmotile, Nonsporulating, Facultative, Mesophile Biotechnological, Amino acids production None Soil 30 - 45 Soils at Kanagawa, Japan in the late 1980's Japan 63.1 Public Gc00140 000470_GCAT 196164 305 637000083 3147 2950 1 2 NC_004369 NCBI, NITE NITE, Ajinomoto Co., Inc NITE Genome Res 13, 1572-9 July 1, 2003 Gojobori T mailto:tgojobori@jbirc.aist.go.jp Bacteria Proteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter hepaticus BACTERIAL Helicobacter hepaticus 3B1 45566 ATCC 51449 Genome PROTEOBACTERIA-EPSILON Complete complete Pathogen, Spiral-shaped, Motile, Aerobe, Mesophile Medical, Mice Pathogen, Animal Pathogen Hepatic inflammation, Liver cancer, Hepatitis, Gastric bowel disease Host, Intestinal microflora 37 Germany 35.9 Public Gc00139 000471_GCAT 235279 185 637000131 1799 1875 1 0 NC_004917, AE017125 NCBI MWG-Biotech, Univ of Wuerzburg, MIT, GeneData PathoGenoMik, NIH PNAS 100, 7901-7906 June 24, 2003 Suerbaum S ssuerbaum@hygiene.uni-wuerzburg.de Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium bovis BACTERIAL Mycobacterium bovis AF2122/97(spoligotype 9) 501447 Genome ACTINOBACTERIA Complete complete Pathogen, Rod-shaped, Nonmotile, Nonsporulating, Aerobe, Mesophile Medical, Animal Pathogen, Cattle Pathogen, Human Pathogen Tuberculosis Host 37 In 1997 in the UK from a cow suffering necrotic lesions in lung and bronchomediastinal lymph nodes European Consortium 65.6 Public Gc00138 000472_GCAT 233413 89 637000169 4345 3920 1 0 NC_002945, BX248333 NCBI, Sanger Institute, Pasteur Sanger Institute, Institut Pasteur Beowulf Genomics, MAFF, Wellcome Trust PNAS 100, 7877-7882 June 24, 2003 Gordon SV s.v.gordon@vla.defra.gsi.gov.uk Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes M3 (SSI-1) M3 Genome FIRMICUTES Complete complete Pathogen, Facultative, Nonmotile, Nonsporulating, Mesophile Medical, Human Pathogen Necrotizing fasciitis, Rheumatic fever Host 30 - 35 Toxic-shock patient in Japan Japan 38.6 Public Gc00137 000473_GCAT 193567 301 637000301 1894 1861 1 0 NC_004606 NCBI, GIRC Japanese Consortium JSPS Genome Res 13, 1042-55 June 10, 2003 Nakagawa I ichiro@dent.osaka-u.ac.jp Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis Ames Genome FIRMICUTES Complete complete Aerobe, Sporulating, Motile, Non-Pathogen, Rod-shaped, Mesophile Medical, Biothreat None Soil USA 35.4 Public Gc00136 000474_GCAT 198094 309 637000014 5227 5311 1 0 NC_003997, AE016877 NCBI TIGR ONR, DOE, NIH-NIAID Nature 423, 81-86 May 1, 2003 Read TD http://www.tigr.org/~tread/ Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus ATCC14579 DSM 31 4491 ATCC 14579 Genome FIRMICUTES Complete complete Pathogen, Facultative, Motile, Sporulating, Rod-shaped, Mesophile Medical, Biothreat, Human Pathogen Food poisoning Soil 25 - 35 International 35.3 Public Gc00135 000475_GCAT 226900 384 637000017 5411 5234 1 1 NC_004722, AE016877 NCBI Integrated Genomics Inc, INRA DARPA Nature 423, 87-91 May 1, 2003 Ivanova N NNIvanova@lbl.gov Bacteria Proteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas europaea BACTERIAL Nitrosomonas europaea IFO 140591 ATCC 19718 Genome PROTEOBACTERIA-BETA Complete complete Nitrogen cycle, Nitrifying, Carbon dioxide fixation, Motile, Aerobe, Chemolithoautotroph, Mesophile Biotechnological, Environmental, Wastewater treatment None Soil, Aquatic USA 50.7 Public Gc00134 000476_GCAT 228410 52 637000195 2812 2461 1 0 NC_004757 NCBI, Joint Genome Institute, ORNL Joint Genome Institute DOE J. Bacteriol. 185, 2759-2773 April 30, 2003 Chain P chain2@llnl.gov Bacteria Proteobacteria Legionellales Coxiellaceae Coxiella Coxiella burnetii BACTERIAL Coxiella burnetii Nine Mile phase I / RSA 493 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Obligate intracellular, Facultative, Acidophile, Motile, Coccus-shaped, Sporulating, Mesophile Medical, Biothreat, Human Pathogen, Animal Pathogen Q fever, Food poisoning Host, Soil 37 USA 42.7 Public Gc00133 000477_GCAT 227377 41 637000086 1995 2016 1 1 NC_002971, AE016828 NCBI TIGR NIH-NIAID, DARPA PNAS 100, 5455-60 April 29, 2003 Heidelberg JF jheidel@tigr.org Bacteria Spirochaetes Spirochaetales Leptospiraceae Leptospira Leptospira interrogans BACTERIAL Leptospira interrogans lai 56601 lai Genome SPIROCHAETES Complete complete Pathogen, Parasite, Spiral-shaped, Aerobe, Motile, Mesophile Medical, Animal Pathogen Leptospirosis Host, Soil, Aquatic 28 - 30 China 36 Public Gc00132 000478_GCAT 189518 293 637000151 4690 4727 2 0 NC_004342, NC_004343, AE010300, AE010301 NCBI_1, NCBI_2, LeptoList, CHGC, TIGR Chinese National Human Genome Center at Shanghai CNCBD Nature 422, 888-93 April 24, 2003 Zhao G-P gpzhao@sibs.ac.cn Eukaryota Ascomycota Sordariales Sordariaceae Neurospora Neurospora crassa EUKARYAL Neurospora crassa OR74A ABI 10x Genome FUNGI-ASCOMYCOTA Quality Draft incomplete Mesophile FGI USA Public Gc00131 000479_GCAT 367110 13841 640281015 43000 10082 7 0 AABX01000000 NCBI, Broad Institute, TIGR Broad Institute, OGI School of Science & Engineering, Univ of Kentucky, Univ of Kansas NSF Nature 422, 859-68 April 23, 2003 Birren B bwb@genome.wi.mit.edu Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Shigella Shigella flexneri BACTERIAL Shigella flexneri 2457T 2a 581834 ATCC 700930 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Facultative, Chemoorganotroph, Rod-shaped, Mesophile Medical, Human Pathogen Dysenteria, Gastroenteritis, Food poisoning Host 37 USA 50.9 Public Gc00130 000480_GCAT 198215 408 637000263 4599 4068 1 0 NC_004741 NCBI, Univ of Wisconsin Univ of Wisconsin NIH-NIAID Infect. Immun. 71, 2775-2786 April 23, 2003 Blattner FR http://www.genetics.wisc.edu/research/blattner/blattner_f.html Bacteria Chlamydiae Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila caviae BACTERIAL Chlamydophila caviae GPIC 302235 Genome CHLAMYDIAE Complete complete Pathogen, Rod-shaped, Mesophile Medical, Swine Pathogen, Animal Pathogen Pharyngitis, Bronchitis, Pneumonia, Respiratory infection Host 37 USA 39.2 Public Gc00129 000481_GCAT 227941 228 637000066 1173 998 1 1 NC_003361, AE015925 NCBI TIGR NIH-NIAID NAR 31, 2134-2147 April 15, 2003 Read TD tread@tigr.org Bacteria Actinobacteria Actinomycetales Streptomycetaceae Streptomyces Streptomyces avermitilis BACTERIAL Streptomyces avermitilis MA-4680 181026 ATCC 31267, NRRL 8165, NCIMB 12804 Genome ACTINOBACTERIA Complete complete Nonmotile, Sporulating, Aerobe, Filament-shaped, Mesophile Biotechnological, Antibiotic production None Soil 25 - 35 Soil sample collected in Shizuoka Prefecture Japan Japan 70.7 Public Gc00128 000482_GCAT 227882 189 637000304 9025 7577 1 1 NC_003155 NCBI, NITE Kitasato Univ, Univ of Tokyo, NITE, NIID MEXT Nat. Biotechnol 21, 526-31 April 14, 2003 Omura S http://www.kuleuven.ac.be/gih/satoshi.htm Bacteria Firmicutes Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis V583 118519 ATCC 700802 Genome FIRMICUTES Complete complete Pathogen, Facultative, Nonmotile, Chemoorganotroph, Mesophile Medical, Human Pathogen Urinary infection, Bacteremia, Endocarditis Host, Intestinal microflora, Wastewater 37 USA 37.5 Public Gc00127 000483_GCAT 226185 70 637000101 3218 3113 1 3 NC_004668, AE016830 NCBI, TIGR TIGR NIH-NIAID Science 299, 2071-4 March 28, 2003 Paulsen IT ipaulsen@tigr.org Bacteria Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron BACTERIAL Bacteroides thetaiotaomicron VPI-5482 106468 ATCC 29148 Mammals Genome BACTEROIDETES Complete complete Obligate anaerobe, Pathogen, Mesophile Medical Peritonitis Host, Intestinal microflora Feces of a healthy adult USA 42.8 Public Gc00126 000484_GCAT 226186 399 637000026 6260 4778 1 1 NC_004663, AE015928 NCBI, Entrez Washington Univ, AstraZeneca AstraZeneca, NIH Science 299, 2074-6 March 28, 2003 Gordon JI jgordon@molecool.wustl.edu Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Typhi Ty2 ATCC700931 Typhi Ty2 581835 ATCC 700931 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped, Mesophile Medical, Human Pathogen Typhoid fever, Salmonellosis, Food poisoning, Gastroenteritis Host, Food, Soil, Aquatic 37 USA 52 Public Gc00125 000485_GCAT 209261 371 637000253 4791 4318 1 0 NC_004631 NCBI, Univ of Wisconsin Univ of Wisconsin NIH-NIAID J. Bacteriol 185, 2330-7 March 21, 2003 Blattner FR http://www.genetics.wisc.edu/research/blattner/blattner_f.html Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus BACTERIAL Vibrio parahaemolyticus RIMD 2210633 O3:K6 377507 Genome PROTEOBACTERIA-GAMMA Complete complete Facultative, Motile, Pathogen, Heterotroph, Rod-shaped, Mesophile Medical, Human Pathogen Gastroenteritis Aquatic 20 - 30 Clinical strain isolated in 1996 in Osaka Japan Japan 45.3 Public Gc00124 000486_GCAT 223926 360 637000335 5165 4832 2 0 NC_004603, NC_004605 NCBI_1, NCBI_2, GIRC, TIGR Japanese Consortium, RIKEN JSPS Lancet 361, 743-9 March 1, 2003 Iida T iida@biken.osaka-u.ac.jp Bacteria Actinobacteria Actinomycetales Cellulomonadaceae Tropheryma Tropheryma whipplei BACTERIAL Tropheryma whipplei TW08/27 Genome ACTINOBACTERIA Complete complete Pathogen, Rod-shaped, Nonmotile, Aerobe, Nonsporulating, Mesophile Medical, Human Pathogen Whipple's disease Host 37 Cerebrospinal fluid a woman who had suffered severe weight loss in Germany International 46.3 Public Gc00123 000487_GCAT 218496 354 637000330 925 783 1 0 NC_004551 NCBI, Sanger Institute, TIGR Sanger Institute, Stanford Univ, Univ of Birmingham Beowulf Genomics Lancet 361, 637-644 February 24, 2003 Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Firmicutes Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus plantarum BACTERIAL Lactobacillus plantarum WCFS1 Genome FIRMICUTES Complete complete Probiotic, Rod-shaped, Facultative, Mesophile Biotechnological, Lactic acid production, Food industry None Intestinal microflora, Host 25 - 35 Human saliva Netherlands 44.5 Public Gc00122 000488_GCAT 220668 356 637000141 3308 3009 1 3 NC_004567, AL935263 NCBI, Univ of Nijmegen, Greenomics, TIGR, Entrez Wageningen Centre for Food Sciences, Greenomics WCFS PNAS 100, 1990-5 February 14, 2003 Kleerebezem M kleerebe@nizo.nl Bacteria Proteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia sibirica BACTERIAL Rickettsia sibirica 246 621684 Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Aerobe, Nonmotile, Nonsporulating, Obligate parasite, Mesophile Medical, Human Pathogen North Asian tick typhus Host USA 32.5 Public Gc00121 000489_GCAT 272951 1414 638341178 1250 1234 1 0 NZ_AABW00000000 NCBI, Agencourt Bioscience Univ of Maryland School of Medicine, CDC, Agencourt Bioscience NIH-NIAID NAR 32, 1059-1064 Feb 6, 2003 Malek JA jamalek@agencourt.com Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium tetani BACTERIAL Clostridium tetani Massachusetts E88 Genome FIRMICUTES Complete complete Pathogen, Anaerobe, Sporulating, Rod-shaped, Mesophile Medical, Human Pathogen, Animal Pathogen Tetanus Host Germany 29.6 Public Gc00120 000490_GCAT 212717 81 637000080 2799 2373 1 1 NC_004557, AE015927 NCBI, Goettingen Genomics Laboratory, TIGR, ClostriDB Goettingen Genomics Laboratory German Ministry for Science and Culture PNAS 100, 1316-21 February 5, 2003 Gottschalk G ggottsc@gwdg.de Bacteria Proteobacteria Xanthomonadales Xanthomonadaceae Xylella Xylella fastidiosa BACTERIAL Xylella fastidiosa-grape Temecula1 581964 ATCC 700964 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Rod-shaped, Aerobe, Mesophile Agricultural, Plant Pathogen Black rot, Citrus canker Host 26 - 28 In 1998 from a naturally infected Californian grapevine Brazil 51.8 Public Gc00119 000491_GCAT 183190 285 637000349 2519 2034 1 1 NC_004556 NCBI, TIGR AEG Brazilian Consortium FAPESP, USDA J. Bacteriol 185, 1018-1026 February 3, 2003 Van Sluys MA mavsluys@usp.br Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Buchnera Buchnera aphidicola BACTERIAL Buchnera aphidicola BP Baizongia pistaciae Genome PROTEOBACTERIA-GAMMA Complete complete Insect endosymbiont, Endosymbiont, Mesophile Biotechnological None Host Spain 26 Public Gc00118 000492_GCAT 224915 256 639633012 615 504 1 0 NC_004545, AE016826 NCBI, CNB, TIGR Centro de Astrobiologia, Spain, Univ of Valencia, CNB European Social Funds PNAS 100, 581-586 January 21, 2003 Moya A andres.moya@uv.es Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis BACTERIAL Staphylococcus epidermidis ATCC 12228 53811 ATCC 12228 Genome FIRMICUTES Complete complete Non-Pathogen, Facultative, Nonmotile, Nonsporulating, Coccus-shaped, Non-Biofilm forming, Mesophile Medical None Host 30 - 37 China 32.1 Public Gc00117 000493_GCAT 176280 279 637000281 2499 2419 1 6 NC_004461 NCBI, SepiList, TIGR Chinese National Human Genome Center at Shanghai, Shanghai Medical Univ NSFC Mol Microbiology 49, 1577-93 January 2, 2003 Wen Y-M ymwen@shmu.edu.cn Bacteria Proteobacteria Rhizobiales Bradyrhizobiaceae Bradyrhizobium Bradyrhizobium japonicum BACTERIAL Bradyrhizobium japonicum USDA110 84001 Soybeans Genome PROTEOBACTERIA-ALPHA Complete complete Nitrogen fixation, Aerobe, Motile, Stores polyhydroxybutyrate, Rod-shaped, Photosynthetic, Mesophile Agricultural None Host 25 - 30 Soybean nodule in 1957 in Florida USA Japan 64.1 Public Gc00116 000494_GCAT 224911 17 637000038 9105 8317 1 0 NC_004463, BA000040 NCBI, Kazusa, TIGR Kazusa DNA Research Institute KDRI DNA Research 9, 189-97 December 31, 2002 Kaneko, T kaneko@kazusa.or.jp Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio vulnificus BACTERIAL Vibrio vulnificus CMCP6 377508 Genome PROTEOBACTERIA-GAMMA Complete complete Facultative, Pathogen, Heterotroph, Rod-shaped, Motile, Mesophile Medical, Fish Pathogen Gastroenteritis, Septicemia Aquatic 20 - 30 Korea 46 Public Gc00115 000495_GCAT 216895 349 637000336 5211 4489 2 0 NC_004459, NC_004460 NCBI_1, NCBI_2, Chonnam National Univ, DDBJ, TIGR Chonnam National Univ, S. Korea NHRI Unpublished December 23, 2002 Eukaryota Chordata Enterogona Cionidae Ciona Ciona intestinalis EUKARYAL Ciona intestinalis ABI 8.2x Genome CHORDATA-FISH Quality Draft complete Mesophile Evolutionary None Aquatic USA Public Gc00114 000496_GCAT 7719 166 116700 16000 14 0 AABS00000000 NCBI, Joint Genome Institute, TIGR Joint Genome Institute DOE Science 298,2157-67 December 13, 2002 Rokhsar D dsrokhsar@lbl.gov Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O6:K2:H1 UPEC-CFT073 O6:K2:H1 118707 ATCC 700928 Genome PROTEOBACTERIA-GAMMA Complete complete Facultative, Motile, Pathogen, Rod-shaped, Nonsporulating, Mesophile Medical, Human Pathogen Pyelonephritis, Cystitis, Urinary infection Host, Human intestinal microflora 37 USA 50.5 Public Gc00113 000497_GCAT 199310 313 637000105 5231 5379 1 0 NC_004431, AE014075 NCBI, Univ of Wisconsin, TIGR Univ of Wisconsin NIH-NIAID PNAS 99, 17020-4 December 9, 2002 Blattner FR http://www.genetics.wisc.edu/research/blattner/blattner_f.html Eukaryota Chordata Rodentia Muridae Mus Mus musculus EUKARYAL Mus musculus C57BL/6J 5x Genome CHORDATA-MAMMALS Quality Draft complete Mesophile Model organism International Public Gc00112 000498_GCAT 10090 13183 639370800 2500000 24174 20 0 NC_000067-87 NCBI, Ensembl, ORNL, BCM-HGSC, IBM-Annotation, NISC-NIH, Washington Univ, TIGR, Sanger Institute International Collaboration, Sanger Institute, BCM-HGSC, Washington Univ, Genoscope NIH Nature 420, 520-62 December 5, 2002 Waterston R waterston@gs.washington.edu Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida BACTERIAL Pseudomonas putida KT2440 113525 Genome PROTEOBACTERIA-GAMMA Complete complete Aerobe, Motile, Rod-shaped, Non-Pathogen, Saprophyte, Mesophile, Heterotroph Environmental, Bioremediation None Soil Derived from a toluene-degrading isolate International 61.5 Public Gc00111 000499_GCAT 160488 267 637000222 6181 5350 1 0 NC_002947 NCBI, TIGR, Pseudomonas Genome DBase German Consortium, TIGR DOE, BMBF Env Microbiology 4, 799-808 December 3, 2002 Nelson KE http://www.tigr.org/~kenelson/ Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma penetrans BACTERIAL Mycoplasma penetrans HF-2 Genome FIRMICUTES Complete complete Pathogen, Nonmotile, Facultative, Nonsporulating, Mesophile Medical, Human Pathogen Urogenital infection, Respiratory infection Host 37 Japan 25.7 Public Gc00110 000500_GCAT 272633 176 637000182 1358 1037 1 0 NC_004432 NCBI, NIH-NET, TIGR, Molligen NIID, Kitasato Univ, RIKEN JSPS NAR 30, 5293-5300 December 1, 2002 Sasaki Y yuko@nih.go.jp Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus mutans BACTERIAL Streptococcus mutans UA159 C 118212 ATCC 700610 Genome FIRMICUTES Complete complete Pathogen, Facultative, Nonmotile, Nonsporulating, Facultative, Mesophile Medical, Human Pathogen, Dental Pathogen Dental caries Host 37 Child with active dental caries in 1982 USA 36.8 Public Gc00109 000501_GCAT 210007 333 637000288 2030 1960 1 0 NC_004350 NCBI, Univ of Oklahoma, Microgen, TIGR Univ of Oklahoma, Ohio State Univ NIH-NIDCR PNAS 99,14434-14439 October 29, 2002 Ferretti,J.J Joe-Ferretti@ouhsc.edu Bacteria Actinobacteria Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum BACTERIAL Bifidobacterium longum NCC2705 NCC2705 Genome ACTINOBACTERIA Complete complete Probiotic, Rod-shaped, Anaerobe, Nonmotile, Nonsporulating, Non-Pathogen, Mesophile Biotechnological, Food industry None Host, Intestinal microflora 37 - 41 Infant feces International 60.1 Public Gc00108 000502_GCAT 206672 328 637000031 2256 1727 1 1 NC_004307, AE014295 NCBI, TIGR Nestle, Univ of Georgia Nestle PNAS 99,14422-14427 October 29, 2002 Schell MA http://www.uga.edu/mib/mschell.htm Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Wigglesworthia Wigglesworthia glossinidia BACTERIAL Wigglesworthia (Glossina) glossinidia (brevipalpis) P-endosymbiont Glossina brevipalpis Genome PROTEOBACTERIA-GAMMA Complete complete Insect endosymbiont, Endosymbiont, Mesophile Biotechnological, Evolutionary None Host International 22 Public Gc00107 000503_GCAT 36870 274 637000338 697 611 1 1 NC_004344 NCBI, TIGR Yale Univ, Kitasato Univ, RIKEN JSPS, NIH Nature Genetics 32,402-407 October 24, 2002 Aksoy S http://info.med.yale.edu/eph/html/faculty_members/aksoy.html Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Shigella Shigella flexneri BACTERIAL Shigella flexneri 301 2a Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Facultative, Rod-shaped, Mesophile Medical, Biothreat, Human Pathogen Dysenteria, Shigellosis, Food poisoning Host 37 In 1984 from a patient in Beijing China China 50.9 Public Gc00106 000504_GCAT 198214 310 637000264 4607 4182 1 1 NC_004337 NCBI, TIGR Microbial Genome Center, Beijing Chinese Ministry of Public Health NAR 30, 4432-4441 October 16, 2002 Jin Q zdsys@sina.com Bacteria Proteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella oneidensis BACTERIAL Shewanella oneidensis MR-1 121993 ATCC700550 Genome PROTEOBACTERIA-GAMMA Complete complete Metal reducer, Rod-shaped, Motile, Facultative, Opportunistic Pathogen, Mesophile Biotechnological, Bioremediation, Environmental None Aquatic Oneida lake in New York USA 46 Public Gc00105 000505_GCAT 211586 335 637000258 4969 4324 1 1 NC_004347 NCBI, TIGR TIGR DOE Nature Biotechnology 20, 1118-1123 October 7, 2002 Heidelberg JF jheidel@tigr.org Eukaryota Arthropoda Diptera Culicidae Anopheles Anopheles gambiae EUKARYAL Anopheles gambiae PEST ABI 10x Genome ARTHROPODA Quality Draft incomplete Mesophile International 44 Public Gc00104 000506_GCAT 180454 1438 639591500 278000 13683 5 0 AAAB01000000 NCBI, Genoscope, Institut Pasteur, TIGR Celera Genomics, Genoscope NIH-NIAID Science 298, 129-149 October 4, 2002 AnoDB AnoDB-comments@imbb.forth.gr Eukaryota Apicomplexa Haemosporida unclassified Plasmodium Plasmodium yoelii EUKARYAL Plasmodium yoelii yoelii 17XNL ABI 5x Genome PROTISTS-APICOMPLEXA Quality Draft incomplete Parasite, Pathogen, Mesophile Medical, Animal Pathogen, Rodent Pathogen Malaria Host USA Public Gc00103 000507_GCAT 352914 1436 640281013 23100 5878 14 0 AABL01000000 NCBI, TIGR, PlasmoDB, TIGR TIGR, NMRC DOD Nature 419, 512-519 October 3, 2002 Carlton JM carlton@tigr.org Eukaryota Apicomplexa Haemosporida unclassified Plasmodium Plasmodium falciparum EUKARYAL Plasmodium falciparum 3D7 ABI Genome PROTISTS-APICOMPLEXA Complete complete Pathogen, Parasite, Mesophile Medical, Human Pathogen Malaria Host International Public Gc00102 000508_GCAT 36329 13173 638269502 22900 5268 14 0 NC_004314-31 NCBI, PlasmoDB, Sanger Institute, TIGR, Stanford, IBM-Annotation Malaria Genome Project Consortium Wellcome Trust, Burroughs Wellcome Fund, NIH-NIAID, Naval Medical Research Center, MRMC Nature 419, 498-511 October 3, 2002 Gardner MJ gardner@tigr.org Bacteria Proteobacteria Rhizobiales Brucellaceae Brucella Brucella suis BACTERIAL Brucella melitensis bv suis 1330 1 675075 Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Aerobe, Nonmotile, Facultative intracellular, Nonsporulating, Mesophile Medical, Human Pathogen, Animal Pathogen, Biothreat Brucellosis, Infectious abortions, Fever Host 37 Swine isolate USA 57.3 Public Gc00101 000509_GCAT 204722 320 637000042 3310 3271 2 0 NC_004310, NC_004311, AE014291, AE014292 NCBI, TIGR TIGR DARPA, NIH-NIAID PNAS 99, 13148-13153 October 1, 2002 Paulsen I http://www.bio.jhu.edu/Directory/Faculty/Paulsen/Default.html Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae BACTERIAL Streptococcus agalactiae NEM316 III/III Genome FIRMICUTES Complete complete Pathogen, Facultative, Nonmotile, Nonsporulating, Coccus-shaped, Mesophile Medical, Human Pathogen Meningitis Host 37 Case of fatal septicemia France 35.6 Public Gc00100 000510_GCAT 211110 334 637000287 2211 2094 1 0 NC_004368 NCBI, SagaList, TIGR Institut Pasteur MENRT Mol Microbiol 45, 1499-513 September 30, 2002 Kunst F fkunst@pasteur.fr Bacteria Firmicutes Bacillales Bacillaceae Oceanobacillus Oceanobacillus iheyensis BACTERIAL Oceanobacillus iheyensis HTE831 303306 DSM 14371, JCM 11309 Genome FIRMICUTES Complete complete Alkalophile, Halotolerant, Sporulating, Rod-shaped, Motile, Aerobe, Mesophile Biotechnological None Soil 30 Deep sea mud at 1050m depth from the Iheya ridge near Okinawa Japan in 1998 Japan 35.7 Public Gc00099 000511_GCAT 221109 284 637000201 3630 3500 1 0 NC_004193 NCBI, ExtremoBase, TIGR JAMSTEC NAR 30, 3927-3935 September 7, 2002 Takami H takamih@jamstec.go.jp Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae BACTERIAL Streptococcus agalactiae 2603V/R V/V 494127 Genome FIRMICUTES Complete complete Pathogen, Facultative, Nonmotile, Nonsporulating, Coccus-shaped, Mesophile Medical, Human Pathogen Septicemia, Pneumonia, Meningitis Host 37 USA 35.6 Public Gc00098 000512_GCAT 208435 330 637000285 2160 2124 1 0 NC_004116 NCBI, TIGR TIGR NIH-NIAID PNAS 99, 12391-12396 August 28, 2002 Tettelin HS http://www.tigr.org/~tettelin/ Eukaryota Chordata Tetraodontiformes Tetraodontidae Takifugu Takifugu rubripes EUKARYAL Takifugu rubripes Genome CHORDATA-FISH Quality Draft complete Mesophile Evolutionary None International Public Gc00097 000513_GCAT 31033 1434 400000 22000 CAAB01000000 NCBI, Fugu Genome Consortium, HGMP-RC, Joint Genome Institute, Sanger Institute International Collaboration, Joint Genome Institute MRC, DOE Science 297, 1301-10 August 22, 2002 Aparicio S saa1000@cam.ac.uk Bacteria Cyanobacteria Chroococcales unclassified Thermosynechococcus Thermosynechococcus elongatus BACTERIAL Thermosynechococcus elongatus BP-1 Genome CYANOBACTERIA Complete complete Thermophile, Photosynthetic, Rod-shaped, Photoautotroph Biotechnological None Aquatic, Hot spring 55 Beppu hot spring in Japan Japan 53.9 Public Gc00096 000514_GCAT 197221 308 637000320 2593 2476 1 0 NC_004113 NCBI, Kazusa, TIGR Kazusa DNA Research Institute KDRI DNA Res 9, 123-30 August 19, 2002 Kaneko, T kaneko@kazusa.or.jp Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Mediaevalis KIM10+ Mediaevalis Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Facultative, Rod-shaped, Motile, Mesophile Medical, Human Pathogen, Biothreat Bubonic plague Host 28 - 30 USA 47.6 Public Gc00095 000515_GCAT 187410 288 637000352 4600 4086 1 1 NC_004088 NCBI, Univ of Wisconsin, TIGR Univ of Wisconsin NIH-NIAID J. Bacteriol 184, 4601-4611 July 29, 2002 Blattner FR http://www.genetics.wisc.edu/research/blattner/blattner_f.html Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes M3 MGAS315 M3 352256 Genome FIRMICUTES Complete complete Pathogen, Facultative, Nonmotile, Nonsporulating, Coccus-shaped, Mesophile Medical, Human Pathogen Rheumatic fever Host 30 - 35 USA 38.6 Public Gc00094 000516_GCAT 198466 311 637000296 1900 1865 1 0 NC_004070 NCBI, TIGR RML-NIAID, Univ of Minnesota NIH PNAS 99, 10078-10083 July 16, 2002 Musser JM http://www.niaid.nih.gov/dir/labs/lhbp/musser.htm Archaea Euryarchaeota Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei ARCHAEAL Methanosarcina mazei Go1 OCM 88 118991 ATCC BAA-199, DSMZ 3647 Genome EURYARCHAEOTA-METHANOMICROBIA Complete complete Methanogen, Carbon cycle, Nonmotile, Nonsporulating, Anaerobe, Mesophile, Lithotroph Biotechnological, Environmental, Energy production None Soil, Sludge, Mud, Feces 5.5-8 30 - 40 International 41.5 Public Gc00093 000517_GCAT 192952 300 638154509 4096 3370 1 0 NC_003901 NCBI, Integr8, Goettingen Genomics Laboratory, TIGR Goettingen Genomics Laboratory, Integrated Genomics Inc Ministry of Lower Saxony, MWK J. Mol. Micro. Biotechnol. 4, 453-461 July 10, 2002 Gottschalk G ggottsc@gwdg.de Bacteria Chlorobi Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum tepidum BACTERIAL Chlorobium tepidum TLS 162992 ATCC 49652, DSM 12025 Genome CHLOROBI Complete complete Green sulfur, Photosynthetic, Global carbon cycle, Nonmotile, Obligate anaerobe, Rod-shaped, Nitrogen fixation, Photolithoautotroph, Thermophile Biotechnological, Environmental None Aquatic, Hot spring 48 New Zealand high-sulfide hot spring USA 56.5 Public Gc00092 000518_GCAT 194439 302 637000073 2154 2252 1 0 NC_002932, AE006470 NCBI, TIGR, Kazusa TIGR DOE PNAS 99, 9509-9514 July 9, 2002 Eisen JA http://www.tigr.org/~jeisen/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Buchnera Buchnera aphidicola BACTERIAL Buchnera aphidicola SG Schizaphis graminum Genome PROTEOBACTERIA-GAMMA Complete complete Insect endosymbiont, Endosymbiont, Mesophile Biotechnological None Host Sweden 25.3 Public Gc00091 000519_GCAT 198804 312 637000045 641 546 1 0 NC_004061, AE013218 NCBI, TIGR Univ of Uppsala NSF Science 296, 2376-2379 June 28, 2002 Andersson SG http://artedi.ebc.uu.se/molev/staff/staf/people/siv.html Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus MW2 Genome FIRMICUTES Complete complete Pathogen, Facultative, Coccus-shaped, Nonsporulating, Nonmotile, Mesophile Medical, Human Pathogen, Animal Pathogen, Cattle Pathogen, Poultry Pathogen Toxic-shock syndrome, Staphylococcal scarlet fever Host 30 - 37 Japan 32.8 Public Gc00090 000520_GCAT 196620 306 637000276 2820 2632 1 0 NC_003923 NCBI, NITE, TIGR NITE, Juntendo Univ NITE Lancet 359, 1819-1827 May 25, 2002 Hiramatsu K mailto:hiram@med.juntendo.ac.jp Bacteria Proteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas axonopodis BACTERIAL Xanthomonas axonopodis pv. citri XV101, 306 97208 ATCC 13902 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Rod-shaped, Motile, Aerobe, Mesophile Agricultural, Plant Pathogen Citrus canker Host 25 - 30 Brazil 64.8 Public Gc00089 000521_GCAT 190486 297 637000342 5175 4312 1 2 NC_003919 NCBI, TIGR FAPESP, Univ of Sao Paulo, Univ of Campinas FAPESP Nature 417, 459-463 May 23, 2002 da Silva AC acrasera@iq.usp.br Bacteria Proteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas campestris BACTERIAL Xanthomonas campestris campestris ATCC 33913 campestris 23358 ATCC 33913, NCPPB 528 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Rod-shaped, Motile, Aerobe, Mesophile Agricultural, Plant Pathogen Black rot Host 25 - 30 Cabbage Brazil 65.1 Public Gc00088 000522_GCAT 190485 296 637000344 5076 4181 1 0 NC_003902 NCBI, Univ of Sao Paulo, TIGR FAPESP, Univ of Sao Paulo FAPESP Nature 417, 459-463 May 23, 2002 da Silva AC acrasera@iq.usp.br Bacteria Actinobacteria Actinomycetales Streptomycetaceae Streptomyces Streptomyces coelicolor BACTERIAL Streptomyces coelicolor A3(2) M145 684630 Genome ACTINOBACTERIA Complete complete Nonmotile, Sporulating, Aerobe, Filament-shaped, Mesophile Biotechnological, Antibiotic production None Soil 25 - 35 Derivative of the laboratory strain A3(2) United Kingdom 72.1 Public Gc00087 000523_GCAT 100226 242 637000305 8667 7769 1 2 NC_003888 NCBI, Sanger Institute, TIGR Sanger Institute, John Innes Centre, IGF Beowulf Genomics, BBSRC Nature 417, 141-147 May 9, 2002 Bentley SD sdb@sanger.ac.uk Bacteria Firmicutes Thermoanaerobacteriales Thermoanaerobacteriaceae Thermoanaerobacter Thermoanaerobacter tengcongensis BACTERIAL Thermoanaerobacter tengcongensis MB4T / JCM 11007 304063 Genome FIRMICUTES Complete complete Anaerobe, Saccharolytic, Rod-shaped, Motile, Hyperthermophile Biotechnological None Aquatic, Hot spring 75 Hot spring in Tengcong China China 37.6 Public Gc00086 000524_GCAT 273068 249 637000318 2689 2588 1 0 NC_003869 NCBI, GIB, TIGR Beijing Genomics Institute, The Institute of Microbiology, China Genome Res. 5, 689-700 May 7, 2002 Yang H hyang@genomics.org.cn Bacteria Fusobacteria Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum BACTERIAL Fusobacterium nucleatum nucleatum 31256 ATCC 25586 Genome FUSOBACTERIA Complete complete Filament-shaped, Anaerobe, Pathogen, Nonmotile, Nonsporulating, Mesophile Medical, Human Pathogen Periodontal infection Host, Oral microflora 37 USA 27 Public Gc00085 000525_GCAT 190304 295 637000117 2170 2067 1 0 NC_003454, AE009951 NCBI, TIGR Integrated Genomics Inc NIH J Bacteriol 184, 2005-2018 April 10, 2002 Kapatral V vinayak@integratedgenomics.com Archaea Euryarchaeota Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina acetivorans ARCHAEAL Methanosarcina acetivorans C2A 124586 ATCC 35395, DSM 2834 Genome EURYARCHAEOTA-METHANOMICROBIA Complete complete Methanogen, Carbon cycle, Nonsporulating, Nonmotile, Anaerobe, Mesophile, Lithotroph Biotechnological, Energy production, Environmental None Marine, Oil fields, Hydrothermal vent 6.5-7 35 - 40 Marine sediment USA 42.7 Public Gc00084 000526_GCAT 188937 290 638154508 5751 4540 1 0 NC_003552 NCBI, Integr8, Broad Institute, TIGR Broad Institute, Univ of Illinois at Urbana-Champaign Genome Res. 12, 532-542 April 10, 2002 Galagan JE jgalag@mit.edu Eukaryota Streptophyta Poales Poaceae Oryza Oryza sativa EUKARYAL Oryza sativa L. ssp. indica ABI 6x Genome PLANTS-STREPTOPHYTA Quality Draft complete Mesophile Agricultural, Model organism China Public Gc00083 000527_GCAT 39946 361 420000 50000 12 0 AAAA01000000 NCBI, RiceGD Beijing Genomics Institute, Zhejiang Univ, Chinese Academy of Sciences Chinese Academy of Science, NSFC Science 296, 79-92 April 5, 2002 Yang H hyang@genomics.org.cn Eukaryota Streptophyta Poales Poaceae Oryza Oryza sativa EUKARYAL Oryza sativa ssp. japonica Genome PLANTS-STREPTOPHYTA Quality Draft complete Mesophile, Aerobe Agricultural, Model organism USA Public Gc00082 000528_GCAT 39947 420000 50000 12 0 AACV01000000 NCBI Syngenta AG, Myriad Genetics Science 296, 92-100 April 5, 2002 Goff SA stephen.goff@syngenta.com Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes M18 MGAS8232 M18 494010 Genome FIRMICUTES Complete complete Pathogen, Facultative, Nonmotile, Nonsporulating, Mesophile Medical, Human Pathogen Rheumatic fever Host 30 - 35 USA 38.5 Public Gc00081 000529_GCAT 186103 286 637000299 1895 1845 1 0 NC_003485 NCBI, TIGR RML-NIAID, Univ of Minnesota NIH PNAS 99, 4668-4673 April 2, 2002 Musser JM http://www.niaid.nih.gov/dir/labs/lhbp/musser.htm Archaea Euryarchaeota Methanopyrales Methanopyraceae Methanopyrus Methanopyrus kandleri ARCHAEAL Methanopyrus kandleri AV19 159947 DSM 6324 Genome EURYARCHAEOTA-METHANOPYRI Complete complete Hyperthermophile, Methanogen, Carbon cycle, Rod-shaped, Nonsporulating, Anaerobe, Lithotroph Biotechnological, Energy production, Environmental None Marine 5.5-7 80 - 101 Black smoker from the Gulf of California at a depth of 2000m USA 61.2 Public Gc00080 000530_GCAT 190192 294 638154507 1694 1687 1 0 NC_003551 NCBI, Integr8, TIGR Fidelity Systems Inc DOE, NIH PNAS 99, 4644-4649 April 2, 2002 Slesarev AI alex@fidelitysystems.com Eukaryota Ascomycota Schizosaccharomycetales Schizosaccharomycetaceae Schizosaccharomyces Schizosaccharomyces pombe EUKARYAL Schizosaccharomyces pombe 972h 8x 579442 Genome FUNGI-ASCOMYCOTA Complete complete Mesophile Model organism United Kingdom 36 Public Gc00079 000531_GCAT 284812 13836 638208610 12533 5004 3 0 NC_003421-4 NCBI, Sanger Institute, GeneDB, CSHL, TIGR Sanger Institute, Cold Spring Harbor Laboratory European Union, Wellcome Trust, Cancer Research UK Nature 415,871-80 February 21, 2002 Rajandream MA mar@sanger.ac.uk Archaea Euryarchaeota Thermococcales Thermococcaceae Pyrococcus Pyrococcus furiosus ARCHAEAL Pyrococcus furiosus JCM 8422 158448 ATCC 43587, DSM 3638 Genome EURYARCHAEOTA-THERMOCOCCI Complete complete Obligate anaerobe, Motile, Sulfur respiration, Radiation resistant, Hyperthermophile, Coccus-shaped, Nonsporulating Biotechnological None Marine 5-9 70 - 103 Shallow marine solfataric region at Vulcano Island Italy USA 40.8 Public Gc00078 000532_GCAT 186497 287 638154515 1908 2125 1 0 NC_003413 NCBI, Integr8, TIGR Univ of Utah, Univ of Maryland DOE Meth. Enzymol. 330:134-57 February 12, 2002 Robb FT robb@umbi.umd.edu Bacteria Proteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia solanacearum BACTERIAL Ralstonia solanacearum GMI1000 692465 Genome PROTEOBACTERIA-BETA Complete complete Pathogen, Rod-shaped, Aerobe, Motile, Mesophile, Heterotroph Agricultural, Plant Pathogen Plant rot, Wilting disease Soil France 67 Public Gc00077 000533_GCAT 267608 13 637000231 3716 3440 1 1 NC_003295 NCBI, Genoscope, GIB, TIGR Genoscope, INRA, CNRS INRA, CNRS Nature 415,497-502 January 31, 2002 Boucher CA boucher@toulouse.inra.fr Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium perfringens BACTERIAL Clostridium perfringens 13 Genome FIRMICUTES Complete complete Pathogen, Anaerobe, Sporulating, Rod-shaped, Sporulating, Nonmotile, Mesophile Medical, Biothreat, Animal Pathogen, Poultry Pathogen, Swine Pathogen, Human Pathogen Gas gangrene, Food poisoning, Necrotizing enterocolitis, Enteritis necroticans Soil, Host 37 Soil isolate Japan 28.6 Public Gc00076 000534_GCAT 195102 79 637000079 3031 2660 1 1 NC_003366 NCBI, GIB, TIGR, ClostriDB Univ of Tsukuba, Kyushu Univ, Kitasato Univ JSPS PNAS 99, 996-1001 January 22, 2002 Shimizu T tshimizu@md.tsubuka.ac.jp Archaea Crenarchaeota Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum aerophilum ARCHAEAL Pyrobaculum aerophilum IM2 267735 ATCC 51768, DSM 7523 Genome CRENARCHAEOTA-THERMOPROTEI Complete complete Hyperthermophile, Motile, Rod-shaped, Facultative, Nitrate reducer, Nonsporulating, Autotroph Biotechnological None Marine 7 74 - 104 Boiling marine water hole in Maronti Beach, Ischia, Italy USA 51.4 Public Gc00075 000535_GCAT 178306 172 638154513 2222 2605 1 0 NC_003364 NCBI, Integr8, GIB, TIGR CalTech, UCLA ONR, DOE, NIH PNAS 99,984-989 January 22, 2002 Miller JH jhmiller@mbi.ucla.edu Bacteria Proteobacteria Rhizobiales Brucellaceae Brucella Brucella melitensis BACTERIAL Brucella melitensis 16M 1 129462 ATCC 23456 Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Aerobe, Nonmotile, Facultative intracellular, Rod-shaped, Nonsporulating, Mesophile Medical, Biothreat, Human Pathogen, Animal Pathogen Brucellosis Host 37 Infected goat USA 57.2 Public Gc00074 000536_GCAT 224914 180 637000040 3294 3198 2 0 NC_003317, NC_003318, AE008917, AE008918 NCBI, Univ of Scranton, GIB, TIGR Univ of Scranton, Integrated Genomics Inc DARPA PNAS 99,443-448 January 8, 2002 DelVecchio VG vimbm@aol.com Bacteria Proteobacteria Rhizobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens BACTERIAL Agrobacterium tumefaciens C58-UWash 267471 ATCC 33970 Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Aerobe, Motile, Nitrogen fixation, Rod-shaped, Mesophile Agricultural, Plant Pathogen Plant tumors Host, Root nodule 25 - 28 USA 59 Public Gc00073 000537_GCAT 176299 282 639279302 4915 5402 2 2 NC_003304, NC_003305 NCBI, Univ of Washington, GIB, TIGR Univ of Washington, DuPont, Univ of Campinas NSF, NIH Science 294,2317-2323 December 14, 2001 Nester EW gnester@u.washington.edu Bacteria Proteobacteria Rhizobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens BACTERIAL Agrobacterium tumefaciens C58-Cereon 1 267471 ATCC 33970 Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Aerobe, Motile, Nitrogen fixation, Rod-shaped, Mesophile Agricultural, Plant Pathogen Plant tumors Host, Root nodule 25 - 28 Cherry tree tumor USA 59 Public Gc00072 000538_GCAT 176299 283 639279301 4915 4548 2 2 NC_003062, NC_003063, AE007869 NCBI, GIB, TIGR Cereon Genomics, Univ of Richmond, Monsanto Cereon Genomics, NSF, NIH Science 294,2323-2328 December 14, 2001 Slater S steven.c.slater@cereon.com Eukaryota Microsporidia unclassified Unikaryonidae Encephalitozoon Encephalitozoon cuniculi EUKARYAL Encephalitozoon cuniculi GB-M1 ABI Genome FUNGI-MICROSPORIDIA Quality Draft complete Intracellular parasite, Mesophile Medical, Human Pathogen France 48 Public Gc00071 000539_GCAT 284813 13833 638208606 2900 1996 11 0 NC_003229-42 NCBI, Genoscope Genoscope, Univ Blaise Pascal CNRS Nature 414, 450-453 November 22, 2001 Vivares C christian.vivares@univ-bpclermont.fr Bacteria Cyanobacteria Nostocales Nostocaceae Nostoc Nostoc sp. PCC 7120 BACTERIAL Nostoc (Anabaena) sp. PCC 7120 106103 PCC 7120 Genome CYANOBACTERIA Complete complete Nitrogen fixation, Filament-shaped, Motile, Aerobe, Mesophile Biotechnological None Soil International 41.3 Public Gc00070 000540_GCAT 103690 244 637000199 6413 5366 1 6 NC_003272 NCBI, Kazusa, GIB, TIGR, CyanoList Kazusa DNA Research Institute, Michigan State Univ KDRI, DOE DNA Res. 8,205-213 October 31, 2001 Kaneko, T kaneko@kazusa.or.jp Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes EGD-e 1/2a Genome FIRMICUTES Complete complete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped, Mesophile Medical, Animal Pathogen, Cattle Pathogen, Swine Pathogen, Poultry Pathogen Listeriosis, Food poisoning Soil, Aquatic, Intestinal microflora, Food 30 - 37 EGD derivative European Consortium 38 Public Gc00069 000541_GCAT 169963 276 637000153 2944 2846 1 0 NC_003210, AL591824 NCBI, Institut Pasteur, GIB, TIGR, ListiList EC Concortium European Union Science 294,849-852 October 26, 2001 Cossart P pcossart@pasteur.fr Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria innocua BACTERIAL Listeria innocua Clip11262, rhamnose-negative 6a 494327 Genome FIRMICUTES Complete complete Non-Pathogen, Rod-shaped, Motile, Facultative, Mesophile Medical None Soil 30 - 37 European Consortium 37.4 Public Gc00068 000542_GCAT 272626 86 637000152 3011 2968 1 1 NC_003212, AL592022 NCBI, ListiList, GIB, KEGG, TIGR EC Concortium Institut Pasteur, European Union Science 294,849-852 October 26, 2001 Cossart P pcossart@pasteur.fr Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella typhimurium BACTERIAL Salmonella enterica Typhimurium LT2 SGSC1412 / LT2 Typhimurium LT2 118393 ATCC 700720 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped, Mesophile Medical, Human Pathogen Gastroenteritis, Food poisoning, Salmonellosis Host, Food, Soil, Aquatic 37 1940s by Lilleengen USA 52.2 Public Gc00067 000543_GCAT 99287 241 637000255 4857 4425 1 1 NC_003197 NCBI, GIB, TIGR Washington Univ NIH Nature 413,852-856 October 25, 2001 McClelland M mmcclelland@skcc.org Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica sv Typhi CT18 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Facultative, Motile, Rod-shaped, Mesophile Medical, Human Pathogen strictly, Biothreat Typhoid fever, Salmonellosis, Food poisoning Host, Food, Soil, Aquatic 37 United Kingdom 52.1 Public Gc00066 000544_GCAT 220341 236 637000254 4809 4395 1 2 NC_003198 NCBI, Sanger Institute, GIB, TIGR Sanger Institute, Imperial College Beowulf Genomics Nature 413,848-852 October 25, 2001 Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae R6 269575 ATCC BAA-255 Genome FIRMICUTES Complete complete Pathogen, Nonmotile, Nonsporulating, Facultative, Mesophile Medical, Human Pathogen Pneumonia Host, Nasopharyngeal microflora 30 - 35 USA 39.7 Public Gc00065 000545_GCAT 171101 278 637000289 2038 2043 1 0 NC_003098 NCBI, Eli Lilly, GIB, TIGR, StreptoPneumoList Eli Lilly Eli Lilly J Bacteriol. 183,5709-5717 October 10, 2001 Glass JI glass_john_i@lilly.com Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Orientalis CO-92 Orientalis Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Facultative, Rod-shaped, Motile, Mesophile Medical, Human Pathogen, Biothreat, Animal Pathogen Bubonic plague Host 28 - 30 Patientin the USA who died of pneumonic plague after acquiring the disease from an infected cat United Kingdom 47.6 Public Gc00064 000546_GCAT 214092 34 637000351 4653 3885 1 3 NC_003143 NCBI, Sanger Institute, IBM-Annotation, GIB, KEGG, TIGR Sanger Institute, MDS, Imperial College, DSTL Beowulf Genomics Nature 413,523-527 October 4, 2001 Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis CDC1551 (Oshkosh) Genome ACTINOBACTERIA Complete complete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile, Nonsporulating, Mesophile Medical, Human Pathogen, Animal Pathogen Tuberculosis Host 37 Clothing factory worker from the Kentucky/Tennessee USA 65.6 Public Gc00063 000547_GCAT 83331 223 637000172 4403 4189 1 0 NC_002755, AE000516 NCBI, TIGR, GIB TIGR NIH J Bacteriol 184, 5479-90 October 2, 2001 Fleischmann RD rdfleisc@tigr.org Bacteria Proteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia conorii BACTERIAL Rickettsia conorii Malish 7 621673 Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Aerobe, Nonmotile, Nonsporulating, Obligate parasite, Mesophile Medical, Human Pathogen Rocky Mountain Spotted Fever Host Human in South Africa France 32.4 Public Gc00062 000548_GCAT 272944 42 637000243 1268 1374 1 0 NC_003103 NCBI, Genoscope, GIB, TIGR Genoscope Aventis Science 293,2093-2098 September 14, 2001 Raoult D Didier.Raoult@medecine.univ-mrs.fr Archaea Crenarchaeota Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus tokodaii ARCHAEAL Sulfolobus tokodaii 7, JCM 10545 304006 Genome CRENARCHAEOTA-THERMOPROTEI Complete complete Acidophile, Aerobe, Hyperthermophile, Nonmotile, Sulfur metabolizing, Lithotroph Biotechnological, Wastewater treatment None Aquatic, Hot spring 2.5-3 80 Beppu Hot Springs in the geothermal area of Kyushu Island Japan Japan 32.8 Public Gc00061 000549_GCAT 273063 246 638154519 2694 2825 1 0 NC_003106 NCBI, Integr8, NITE, GIB, TIGR NITE NITE DNA Res. 8,123-40 August 31, 2001 Kawarabayasi Y mailto:kawarabayasi.yutaka@aist.go.jp Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium acetobutylicum BACTERIAL Clostridium acetobutylicum ATCC 824D 7818 ATCC 824D, DSM 792 Genome FIRMICUTES Complete complete Obligate anaerobe, Sporulating, Motile, Chemoorganotroph, Rod-shaped, Mesophile Biotechnological, Acetone production, Butanol production, Ethanol production None Soil 10 - 65 Garden soil in Connecticut in USA in 1924 USA 30.9 Public Gc00060 000550_GCAT 272562 77 637000076 3940 3672 1 1 NC_003030, AE001437 NCBI, GIB, TIGR Genome Therapeutics DOE J.Bacteriol. 183,4823-4838 August 10, 2001 Smith DR doug.smith@genomecorp.com Bacteria Proteobacteria Rhizobiales Rhizobiaceae Sinorhizobium Sinorhizobium meliloti BACTERIAL Sinorhizobium meliloti 1021 115196 Legumes Genome PROTEOBACTERIA-ALPHA Complete complete Nitrogen fixation, Aerobe, Motile, Stores polyhydroxybutyrate, Symbiont, Rod-shaped, Streptomycin resistant, Mesophile Biotechnological None Soil 25 - 30 Streptomycin resistant derivative of strain 2011 International 62.7 Public Gc00059 000551_GCAT 266834 19 637000269 3654 3341 1 2 NC_003047, BA000012 NCBI, Stanford Univ, IBM-Annotation, GIB, TIGR European Union, Stanford Univ European & Canadian Consortium Science 293,668-672 July 27, 2001 Long SR Sharon.Long@Stanford.edu Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae TIGR4 4 352345 ATCC-BAA-334 Genome FIRMICUTES Complete complete Facultative, Pathogen, Nonmotile, Nonsporulating, Coccus-shaped, Alpha-hemolytic, Mesophile Medical, Human Pathogen Pneumonia, Meningitis, Otitis media Host, Nasopharyngeal microflora 30 - 35 Blood of a 30 year old male patient in Kongsvinger Norway USA 39.7 Public Gc00058 000552_GCAT 170187 277 637000290 2160 2105 1 0 NC_003028 NCBI, TIGR, GIB, StreptoPneumoList TIGR NIH-NIAID, MGRI Science 293,498-506 July 20, 2001 Fraser CM http://www.tigr.org/~cmfraser/ Archaea Crenarchaeota Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus solfataricus ARCHAEAL Sulfolobus solfataricus P2 267483 ATCC 35092, DSM 1617 Genome CRENARCHAEOTA-THERMOPROTEI Complete complete Motile, Obligate aerobe, Hyperthermophile, Acidophile, Sulfur metabolizing, Coccus-shaped, Lithotroph Biotechnological None Aquatic 2-4.5 50 - 87 International 35.8 Public Gc00057 000553_GCAT 273057 108 638154518 2992 2977 1 0 NC_002754 NCBI, LBMGE, France, IBM-Annotation, GIB, TIGR European Union, Canadian Bioinformatics Resource European Union, Canadian Genome Analysis and Technology, National Research Council of Canada PNAS 98,7835-7840 July 3, 2001 Garrett RA garrett@mermaid.molbio.ku.dk Bacteria Proteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter vibrioides BACTERIAL Caulobacter crescentus CB15 123019 ATCC 19089 Genome PROTEOBACTERIA-ALPHA Complete complete Obligate aerobe, Motile, Rod-shaped, Mesophile Biotechnological, Bioremediation, Biogeochemical, Wastewater treatment, Environmental None Aquatic, Soil, Marine 35 USA 67.2 Public Gc00056 000554_GCAT 190650 298 637000061 4016 3737 1 0 NC_002696, AE005673 NCBI, TIGR, GIB TIGR DOE PNAS 98,4136-4141 May 22, 2001 Nierman WC wnierman@tigr.org Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma pulmonis BACTERIAL Mycoplasma pulmonis UAB CTIP Genome FIRMICUTES Complete complete Pathogen, Motile, Facultative, Sphere-shaped, Mesophile Medical, Animal Pathogen Respiratory infection, Genital infection Host 37 Laboratory strain France 26.6 Public Gc00055 000555_GCAT 272635 100 637000184 963 782 1 0 NC_002771 NCBI, Genoscope, MypuList, GIB, TIGR, Molligen Genoscope Institut Pasteur, Genoscope, INRA NAR 29, 2145-2153 May 15, 2001 Blanchard A ablancha@bordeaux.inra.fr Bacteria Firmicutes Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis BACTERIAL Lactococcus lactis lactis IL1403 Genome FIRMICUTES Complete complete Facultative, Nonmotile, Mesophile Biotechnological, Food industry, Cheese production None Host 40 Cheese starter culture France 35.3 Public Gc00054 000556_GCAT 272623 72 637000144 2365 2321 1 0 NC_002662, AE005176 NCBI, INRA, IBM-Annotation, GIB, TIGR Genoscope, INRA INRA Genome Research 11, 731-753 May 10, 2001 Sorokin A sorokine@diamant.jouy.inra.fr Archaea Euryarchaeota Thermococcales Thermococcaceae Pyrococcus Pyrococcus abyssi ARCHAEAL Pyrococcus abyssi GE5 Genome EURYARCHAEOTA-THERMOCOCCI Complete complete Obligate anaerobe, Motile, Sulfur respiration, Nonsporulating, Hyperthermophile, Barophile, Coccus-shaped Biotechnological None Marine, Deep sea 67 - 103 Active chimney in the North Fiji Basin of the Pacific Ocean at a depth of 3500m France 44.7 Public Gc00053 000557_GCAT 272844 179 638154514 1765 1896 1 1 NC_000868 NCBI, Integr8, LBMGE, France, Genoscope, GIB, TIGR, IBM-Annotation Genoscope, IGBMC CNRS, INSERM Genome Res 11, 981-93 May 8, 2001 Poch O poch@igbmc.u-strasbg.fr Eukaryota unclassified unclassified Cryptomonadaceae Guillardia Guillardia theta EUKARYAL Guillardia theta Genome PROTISTS-CRYPTOPHYTA Complete complete Mesophile Model organism International 26 Public Gc00052 000558_GCAT 55529 210 638269501 551 464 3 0 NCBI NCBI, IMB Canadian Institute of Advanced Research, Philipps-Univ Marburg, Univ of British Columbia NSERC, DFG, NERC Nature 410, 1091-1096 April 26, 2001 Cavalier-Smith T cavalier-smith@zoo.ox.ac.uk Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus Mu50 (VRSA) 118360 ATCC 700699 Genome FIRMICUTES Complete complete Pathogen, Facultative, Coccus-shaped, Nonsporulating, Nonmotile, Mesophile Medical, Human Pathogen, Animal Pathogen, Cattle Pathogen, Poultry Pathogen Nosocomial infection, Pneumonia, Deep abscesses, Osteomyelitis, Endocarditis, Phlebitis, Mastitis, Meningitis Host 30 - 37 Pus of a Japanese male baby with a surgical wound infection that did not respond to vancomycin in 1997 Japan 32.9 Public Gc00051 000559_GCAT 158878 263 637000277 2878 2697 1 1 NC_002758 NCBI, Kyushu Univ, GIB, TIGR, AureoList NITE, Juntendo Univ, Univ of Tsukuba, ONRI, Univ of Tokyo, Kyushu Univ, Kyoto Univ, Kitasato Univ, RIKEN NITE, JSPS The Lancet 357, 1225-1240 April 21, 2001 Hiramatsu K hiram@med.juntendo.ac.jp Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus N315 (MRSA) Genome FIRMICUTES Complete complete Pathogen, Facultative, Coccus-shaped, Nonsporulating, Nonmotile, Mesophile Medical, Human Pathogen, Animal Pathogen, Cattle Pathogen, Poultry Pathogen Nosocomial infection, Pneumonia, Deep abscesses, Osteomyelitis, Endocarditis, Phlebitis, Mastitis, Meningitis Host 30 - 37 Pharyngeal smear of a Japanese patient in 1982 Japan 32.8 Public Gc00050 000560_GCAT 158879 264 637000278 2813 2588 1 1 NC_002745 NCBI, NITE, GIB, TIGR, AureoList NITE, Juntendo Univ, Univ of Tsukuba, ONRI, Univ of Tokyo, Kyushu Univ, Kyoto Univ, Kitasato Univ, RIKEN NITE The Lancet 357,1225-1240 April 21, 2001 Hiramatsu K hiram@med.juntendo.ac.jp Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes M1 GAS SF370 M1 117801 ATCC 700294 Genome FIRMICUTES Complete complete Pathogen, Facultative, Nonmotile, Nonsporulating, Coccus-shaped, Mesophile Medical, Human Pathogen strictly Rheumatic fever, Pharyngitis, Tonsillitis, Sinusitis, Otitis, Mastoiditis, Pneumonia Host, Nasopharyngeal microflora 30 - 35 Patient with a wound infection USA 38.5 Public Gc00049 000561_GCAT 160490 269 637000291 1852 1697 1 0 NC_002737 NCBI, Univ of Oklahoma, GIB, Microgen Univ of Oklahoma NIH-NIAID PNAS 98,4658-4663 April 10, 2001 Ferretti JJ Joe-Ferretti@ouhsc.edu Bacteria Proteobacteria Pasteurellales Pasteurellaceae Pasteurella Pasteurella multocida BACTERIAL Pasteurella multocida Pm70 type A 3 Genome PROTEOBACTERIA-GAMMA Complete complete Facultative, Nonmotile, Pathogen, Rod-shaped, Mesophile Medical, Animal Pathogen, Swine Pathogen, Cattle Pathogen, Poultry Pathogen, Human Pathogen, Agricultural Pasteurellosis, Cholera, Septicemia Host 37 Case of cholera in chickens in 1995 USA 40.4 Public Gc00048 000562_GCAT 272843 39 637000203 2257 2015 1 0 NC_002663 NCBI, GIB, TIGR Univ of Minnesota USDA/NRI, MAES PNAS 98, 3460-3465 March 13, 2001 Kapur V http://www.cvm.umn.edu/departments/vpb/faculty/kapur.htm Bacteria Actinobacteria Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium glutamicum BACTERIAL Corynebacterium glutamicum Nakagawa 681595 ATCC 13032, DSM 20300 Genome ACTINOBACTERIA Complete complete Rod-shaped, Nonmotile, Facultative, Nonsporulating, Fast growing, Mesophile Biotechnological, Amino acids production, Food industry, Glutamate production None Normal microflora, Soil 30 - 40 Japan 53.8 Public Gc00047 000563_GCAT 196627 307 639279307 3309 2993 1 0 NC_003450 NCBI, TIGR Kyowa Hakko Co, Kitasato Univ Kyowa Hakko Co Appl Microbiol Biotechnol 62, 99-109 March 12, 2001 Ikeda M m.ikeda@kyowa.co.jp Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 Sakai (EHEC) O157:H7 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Facultative, Motile, Rod-shaped, Enterohemorrhagic, Nonsporulating, Mesophile Medical, Biothreat, Animal Pathogen, Human Pathogen Hemorrhagic colitis, Food poisoning, Enterohaemorrhagic Host, Human intestinal microflora 37 Outbreak in 1982 in Sakai Japan Japan 50.5 Public Gc00046 000564_GCAT 386585 226 637000108 5598 5253 1 1 NC_002695 NCBI, GIRC, GIB, TIGR Japanese Consortium, RIKEN JSPS DNA Research 8, 11-22 February 27, 2001 Hayashi T thayash@fc.miyazaki-med.ac.jp Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium leprae BACTERIAL Mycobacterium leprae TN Genome ACTINOBACTERIA Complete complete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile, Nonsporulating, Mesophile Medical, Human Pathogen Leprosy, Hanson's disease Host 37 Armadillo in Tamil Nadu India European Consortium 57.8 Public Gc00045 000565_GCAT 272631 90 637000170 3268 1605 1 0 NC_002677, AL450380 NCBI, Sanger Institute, Leproma, PEDANT, GIB, TIGR Sanger Institute, Institut Pasteur Amici di Raoul Follereau, The New York Community Trust Nature 409, 1007-1011 February 22, 2001 Cole ST stcole@pasteur.fr Eukaryota Chordata Primates Hominidae Homo Homo sapiens EUKARYAL Homo sapiens Genome CHORDATA-PRIMATES Quality Draft complete Mesophile, Aerobe International Public Gc00044 000566_GCAT 9606 9558 639332100 3200000 26966 24 0 24 Chromosomes NCBI, ORNL, Ensembl, Sanger Institute, HOWDY, IBM-Annotation, TIGR International Collaboration Wellcome Trust Nature 409,860-921 February 15, 2001 Lander ES lander@genome.wi.mit.edu Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 EDL933, EHEC 118705 ATCC 700927 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Facultative, Motile, Rod-shaped, Nonsporulating, Mesophile Medical, Biothreat, Human Pathogen Hemorrhagic colitis, Enterohaemorrhagic, Hamburger disease Host, Human intestinal microflora 25 - 35 Outbreak in 1982 USA 50.4 Public Gc00043 000567_GCAT 155864 259 637000107 5528 5324 1 2 NC_002655, AE005174 NCBI, GIB, TIGR Univ of Wisconsin NIH-NHGRI, NIH-NIAID Nature 409,529-533 January 25, 2001 Perna NT perna@ahabs.wisc.edu Archaea Euryarchaeota Thermoplasmatales Thermoplasmataceae Thermoplasma Thermoplasma volcanium ARCHAEAL Thermoplasma volcanium GSS1 304114 Genome EURYARCHAEOTA-THERMOPLASMATA Complete complete Thermophile, Rod-shaped, Motile, Facultative, Acidophile, Nonsporulating Biotechnological None Marine, Hydrothermal vent, Solfataric field 1-4 33 - 67 Acidic hydrothermal vents on the shore of Aeolian Island of Vulcano Italy Japan 39.9 Public Gc00042 000568_GCAT 273116 206 638154522 1584 1499 1 0 NC_002689 NCBI, Integr8, AIST, GIB, TIGR AIST JST PNAS 97, 14257-14262 December 19, 2000 Suzuki M sbcsuzuk@nibh.go.jp Eukaryota Streptophyta Brassicales Brassicaceae Arabidopsis Arabidopsis thaliana EUKARYAL Arabidopsis thaliana Columbia Genome PLANTS-STREPTOPHYTA Quality Draft complete Mesophile, Aerobe Model organism, Agricultural International Public Gc00041 000569_GCAT 3702 13190 639560100 115428 25498 5 0 5 chromosomes NCBI, KAOS, Univ of Minnesota, CSHL, TIGR, GIB, Integr8 International Collaboration NSF, USDA, DOE, KDRI, European Union Nature 408,796-815 December 14, 2000 TIGR genomeanalysis@tigr.org Bacteria Proteobacteria Rhizobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium loti BACTERIAL Mesorhizobium loti MAFF303099 373790 Lotus Genome PROTEOBACTERIA-ALPHA Complete complete Nitrogen fixation, Symbiont, Rod-shaped, Aerobe, Mesophile Environmental, Bioremediation None Host Japan 62.7 Public Gc00040 000570_GCAT 266835 18 637000159 7036 6743 1 2 NC_002678, NC_002679, NC_002682 NCBI, Kazusa, GIB, TIGR Kazusa DNA Research Institute KDRI DNA Research 7, 331-338 December 10, 2000 Tabata S tabata@kazusa.or.jp Archaea Euryarchaeota Halobacteriales Halobacteriaceae Halobacterium Halobacterium salinarum ARCHAEAL Halobacterium sp. NRC-1 118700 ATCC 700922 Genome EURYARCHAEOTA-HALOBACTERIA Complete complete Aerobe, Chemoorganotroph, Motile, Halophile, Rod-shaped, Nonsporulating, Mesophile Biotechnological None Ponds, Aquatic 42 USA 67.9 Public Gc00039 000571_GCAT 64091 217 638154504 2014 2075 1 2 NC_002607 NCBI, Integr8, GIB, TIGR, IBM-Annotation Univ of Washington- Seattle, Univ of Massachusetts NSF PNAS 97, 12176-12181 October 24, 2000 DasSarma S dassarma@microbio.umass.edu Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma parvum BACTERIAL Ureaplasma urealyticum (parvum) ATCC700970, serovar 3 3 118778 ATCC 700970 Genome FIRMICUTES Complete complete Pathogen, Nonmotile, Facultative, Sphere-shaped, Mesophile Medical, Human Pathogen, Animal Pathogen Supperative arthritis, Pneumonia, Meningitis, Septicemia, Sexually transmitted disease Host, Urogenital tract USA 25.5 Public Gc00038 000572_GCAT 273119 101 637000332 751 614 1 0 NC_002162 NCBI, Univ of Alabama, IBM-Annotation, GIB, TIGR, Molligen Univ of Alabama, Eli Lilly, Perkin-Elmer NIH-NIAID Nature 407, 757-762 October 12, 2000 Glass JI Glass_John_I@Lilly.com Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa PAO1 154131 ATCC 15692 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Aerobe, Motile, Rod-shaped, Polar flagella, Mesophile, Heterotroph Medical, Human Pathogen, Plant Pathogen, Agricultural Nosocomial infection Soil, Aquatic, Host, Wastewater 25 - 30 USA 66.6 Public Gc00037 000573_GCAT 208964 331 637000218 6264 5568 1 0 NC_002516 NCBI, Pseudomonas.com, GIB, TIGR Chiron, Univ of Washington- Seattle Cystic Fibrosis Foundation Nature 406,959-964 September 30, 2000 Olson MV mvo@u.washington.edu Archaea Euryarchaeota Thermoplasmatales Thermoplasmataceae Thermoplasma Thermoplasma acidophilum ARCHAEAL Thermoplasma acidophilum DSM 1728 104667 DSM 1728 Genome EURYARCHAEOTA-THERMOPLASMATA Complete complete Acidophile, Thermophile, Motile, Facultative, Rod-shaped, Nonsporulating Biotechnological, Evolutionary None Solfataric field 0.5-4 45 - 63 Self-heating coal refuse pile in southwestern Indiana Germany 46 Public Gc00036 000574_GCAT 273075 110 638154521 1564 1482 NC_002578 NCBI, Integr8, Max Planck Institute, GIB, TIGR, IBM-Annotation Max Planck Institute, Medigenomix Nature 407, 508-513 September 28, 2000 Baumeister W baumeist@biochem.mpg.de Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Buchnera Buchnera aphidicola BACTERIAL Buchnera aphidicola APS Acyrthosiphon pisum Genome PROTEOBACTERIA-GAMMA Complete complete Insect endosymbiont, Endosymbiont, Mesophile Biotechnological, Evolutionary None Host Japan 26.3 Public Gc00035 000575_GCAT 107806 245 637000043 640 564 1 2 NC_002528, BA000003 NCBI, RIKEN, GIB, TIGR Univ of Tokyo, RIKEN Pro BRAIN, MEXT Nature 407, 81-86 September 7, 2000 Ishikawa H iskw@biol.s.u-tokyo.ac.jp Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae N16961, Biotype ElTor O1 111778 Genome PROTEOBACTERIA-GAMMA Complete complete Facultative, Motile, Pathogen, Heterotroph, Polar flagella, Curved-shaped, Mesophile Medical, Human Pathogen Cholera, Diarrhea, Food poisoning Aquatic, Host, Intestinal microflora, Wastewater 20 - 30 Epidemic outbreak in Bangladesh in 1971 USA 47.3 Public Gc00034 000576_GCAT 243277 36 637000333 4037 3835 2 0 NC_002505, NC_002506 NCBI, TIGR, GIB TIGR NIH-NIAID Nature 406,477-483 August 3, 2000 Fraser CM http://www.tigr.org/~cmfraser/ Bacteria Proteobacteria Xanthomonadales Xanthomonadaceae Xylella Xylella fastidiosa BACTERIAL Xylella fastidiosa CVC 8.1.b clone 9.a.5.c Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Rod-shaped, Aerobe, Mesophile Agricultural, Plant Pathogen Citrus variegated chlorosis, Pierces disease Host 26 - 28 Infected twigs derived from the sweet orange strain Valencia in Brazil Brazil 52.7 Public Gc00033 000577_GCAT 160492 271 637000348 2679 2766 1 2 NC_002488 NCBI, UNICAMP, ONSA, GIB, TIGR ONSA FAPESP Nature 406,151-157 July 13, 2000 Setubal JC setubal@ic.unicamp.br Bacteria Chlamydiae Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila pneumoniae BACTERIAL Chlamydophila pneumoniae J138 Genome CHLAMYDIAE Complete complete Pathogen, Rod-shaped, Obligate intracellular Pathogen, Mesophile Medical, Human Pathogen Pharyngitis, Bronchitis, Pneumonia, Respiratory infection, Heart disease, Asthma, Multiple sclerosis Host, Pharyngeal mucosa 37 Pharyngeal mucosa of a 5 year old male patient with acute bronchitis in Japan in 1994 Japan 40.6 Public Gc00032 000578_GCAT 138677 257 637000070 1228 1069 1 0 NC_002491 NCBI, Kyushu Univ, TIGR, GIB Yamaguchi Univ, Kyushu Univ, RIKEN JSPS NAR 28,2311-2314 June 15, 2000 Shirai M mshirai@po.cc.yamaguchi-u.ac.jp Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus halodurans BACTERIAL Bacillus halodurans C-125 267986 JCM9153 Genome FIRMICUTES Complete complete Facultative, Sporulating, Motile, Alkalophile, Rod-shaped, Mesophile Biotechnological, Alkaliphilic enzyme production, Laundry detergents None Soil, Aquatic 9.5- 1977 Japan 43.7 Public Gc00031 000579_GCAT 272558 235 637000020 4202 4066 1 0 NC_002570, BA000004 NCBI, ExtremoBase, GIB JAMSTEC Nucleic Acids Res 28, 4317-31 April 10, 2000 Takami H takamih@jamstec.go.jp Bacteria Proteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis BACTERIAL Neisseria meningitidis Z2491 A 401211 Genome PROTEOBACTERIA-BETA Complete complete Pathogen, Aerobe, Nonmotile, Nonsporulating, Mesophile Medical, Human Pathogen Meningitis, Septicemia Host, Nasopharyngeal microflora 35 - 37 Gambia in 1983 United Kingdom 51.8 Public Gc00030 000580_GCAT 122587 252 637000190 2184 2065 1 0 NC_003116 NCBI, Sanger Institute, GIB, TIGR, IBM-Annotation Sanger Institute, Univ of Oxford, Max Planck Institute Wellcome Trust Nature 404,502-506 March 30, 2000 Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila melanogaster EUKARYAL Drosophila melanogaster y; cn bw sp ABI Genome ARTHROPODA Quality Draft complete Mesophile, Aerobe Model organism International 41 Public Gc00029 000581_GCAT 7227 13207 639538900 137000 14100 6 0 6 chromosomes NCBI, BGDP, FlyBase-USA, IBM-Annotation, TIGR Celera Genomics, Univ of California, Berkeley, BCM-HGSC, European DGP European Union, Celera Genomics Science 287,2185-95 March 24, 2000 Adams MD Bacteria Chlamydiae Chlamydiales Chlamydiaceae Chlamydia Chlamydia muridarum BACTERIAL Chlamydia muridarum MoPn / Nigg 302228 Genome CHLAMYDIAE Complete complete Pathogen, Nonmotile, Rod-shaped, Obligate intracellular parasite, Mesophile Medical, Animal Pathogen, Human Pathogen Pharyngitis, Bronchitis, Pneumonia, Respiratory infection Host International 40.3 Public Gc00028 000582_GCAT 243161 229 637000062 1072 904 1 1 NC_002620, AE002160 NCBI, TIGR, IBM-Annotation, GIB TIGR, Univ of Manitoba NIH-NIAID NAR 28,1397-1406 March 15, 2000 Fraser CM http://www.tigr.org/~cmfraser/ Bacteria Chlamydiae Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila pneumoniae BACTERIAL Chlamydophila pneumoniae AR39 Genome CHLAMYDIAE Complete complete Pathogen, Obligate intracellular parasite, Nonmotile, Rod-shaped, Mesophile Medical, Human Pathogen Pharyngitis, Bronchitis, Pneumonia, Respiratory infection, Heart disease, Asthma, Multiple sclerosis Host 37 University of Washington student with acute respiratory tract infection in 1983 International 40.6 Public Gc00027 000583_GCAT 115711 247 637000068 1229 1112 1 0 NC_002179, AE002161 NCBI, TIGR, IBM-Annotation, GIB TIGR, Univ of Manitoba NIH-NIAID NAR 28,1397-1406 March 15, 2000 Fraser CM http://www.tigr.org/~cmfraser/ Bacteria Proteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis BACTERIAL Neisseria meningitidis MC58 B 501419 Genome PROTEOBACTERIA-BETA Complete complete Pathogen, Aerobe, Nonmotile, Nonsporulating, Mesophile Medical, Human Pathogen Meningitis, Septicemia Host, Nasopharyngeal microflora 35 - 37 Case of invasive infection. USA 51.5 Public Gc00026 000584_GCAT 122586 251 637000189 2272 2063 1 0 NC_003112 NCBI, TIGR, IBM-Annotation, GIB TIGR Chiron Corp. Science 287,1809-1815 March 10, 2000 Tettelin HS http://www.tigr.org/~tettelin/ Bacteria Proteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni jejuni NCTC 11168 6328 NCTC 11168 Genome PROTEOBACTERIA-EPSILON Complete complete Motile, Helical-shaped, Pathogen, Heterotroph, Nonsporulating, Mesophile Medical, Human Pathogen, Animal Pathogen, Poultry Pathogen Food poisoning, Diarrhea Host, Wastewater Diarrheic patient in 1977 United Kingdom 30.5 Public Gc00025 000585_GCAT 192222 8 637000055 1641 1634 1 0 NC_002163, AL111168 NCBI, Sanger Institute, IBM-Annotation, GIB, TIGR Sanger Institute, LSHTM, Univ of Leicester Beowulf Genomics Nature 403,665-668 February 10, 2000 Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Deinococcus-Thermus Deinococcales Deinococcaceae Deinococcus Deinococcus radiodurans BACTERIAL Deinococcus radiodurans USUHS (R1) 681593 ATCC BAA-816 Genome THERMI Complete complete Aerobe, Nonmotile, Chemoorganotroph, Radiation resistant, Coccus-shaped, Mesophile Environmental, Bioremediation None Soil 30 - 37 USA 66.6 Public Gc00024 000586_GCAT 243230 65 637000092 3060 2637 2 2 NC_001263, NC_001264, AE000513, AE001825 NCBI, TIGR, IBM-Annotation, GIB TIGR DOE Science 286,1571-1577 November 19, 1999 Fraser CM http://www.tigr.org/~cmfraser/ Bacteria Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga maritima BACTERIAL Thermotoga maritima MSB8 112852 ATCC 43589, DSM 3109 Genome THERMOTOGAE Complete complete Rod-shaped, Motile, Anaerobe, Hyperthermophile, Nonsporulating Biotechnological, Energy production, Evolutionary None Marine 80 Geothermal marine area near Vulcano Italy USA 46.2 Public Gc00023 000587_GCAT 243274 111 637000321 1860 1858 1 0 NC_000853 NCBI, TIGR, IBM-Annotation, GIB TIGR DOE Nature 399,323-329 May 27, 1999 Fraser CM http://www.tigr.org/~cmfraser/ Archaea Crenarchaeota Desulfurococcales Desulfurococcaceae Aeropyrum Aeropyrum pernix ARCHAEAL Aeropyrum pernix K1 267839 Genome CRENARCHAEOTA-THERMOPROTEI Complete complete Hyperthermophile, Motile, Aerobe, Sphere-shaped, Heterotroph, Chemolithoautotroph Biotechnological None Marine, Hydrothermal vent, Coastal 5-9 70 - 100 Coastal solfataric thermal vent at Kodakara-Jima Island in Japan in 1993 Japan 56.3 Public Gc00022 000588_GCAT 272557 211 638154501 1669 1700 1 0 NC_000854 NCBI, NITE, Integr8, IBM-Annotation, GIB, TIGR NITE NITE DNA Research 6,83-101 April 30, 1999 Kawarabayasi Y mailto:kawarabayasi.yutaka@aist.go.jp Bacteria Chlamydiae Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila pneumoniae BACTERIAL Chlamydophila pneumoniae CWL029 Genome CHLAMYDIAE Complete complete Obligate intracellular, Pathogen, Rod-shaped, Mesophile Medical, Human Pathogen Pharyngitis, Bronchitis, Pneumonia, Respiratory infection, Heart disease Host 37 USA 40.6 Public Gc00021 000589_GCAT 115713 248 637000069 1230 1052 1 0 NC_000922, AE001363 NCBI, GIB, IBM-Annotation, TIGR Stanford Univ, Univ of California, Berkeley Incyte Nat Genet 21,385-389 April 10, 1999 Stephens RS ctgenome@socrates.berkeley.edu Bacteria Proteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori J99 582789 Genome PROTEOBACTERIA-EPSILON Complete complete Pathogen, Motile, Spiral-shaped, Aerobe, Mesophile Medical, Human Pathogen Ulcer, Gastric inflammation Host, Human stomach 37 Patient with duodenal ulcer in USA in 1994 USA 38 Public Gc00020 000590_GCAT 85963 234 637000134 1643 1491 1 0 NC_000921, AE001439 NCBI, IBM-Annotation, GIB, PyloriGeneTM, TIGR Genome Therapeutics, Astra Genome Therapeutics, Astra Nature 397,176-180 January 14, 1999 Alm RA richard.alm@arcb.us.astra.com Eukaryota Nematoda Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans EUKARYAL Caenorhabditis elegans Bristol N2 ABI Genome NEMATODES Complete complete Mesophile, Aerobe Model organism International 35 Public Gc00019 000591_GCAT 6239 13758 639507900 100272 23209 6 0 NC_003279-84 NCBI, Washington Univ, Sanger Institute, SWISS, IBM-Annotation, NEXTDB, Integr8 Washington Univ, Sanger Institute NIH-NHGRI, MRC Science 282,2012-2018 December 11, 1998 WUSTL worm@watson.wustl.edu Bacteria Proteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia prowazekii BACTERIAL Rickettsia prowazekii Madrid E Genome PROTEOBACTERIA-ALPHA Complete complete Pathogen, Aerobe, Nonmotile, Nonsporulating, Obligate parasite, Mesophile Medical, Biothreat, Human Pathogen Typhus, Rocky Mountain Spotted Fever Host Typhus patient in Madrid Sweden 29 Public Gc00018 000592_GCAT 272947 43 637000245 1111 835 1 0 NC_000963 NCBI, IBM-Annotation, GIB, TIGR Univ of Uppsala SSF, NFR Nature 396,133-140 November 12, 1998 Kurland CG chuck@xray.bmc.uu.se Bacteria Chlamydiae Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis D/UW-3/CX (serovar D) D Genome CHLAMYDIAE Complete complete Pathogen, Obligate intracellular parasite, Nonmotile, Rod-shaped, Mesophile Medical, Human Pathogen, Animal Pathogen Trachoma, Pharyngitis, Bronchitis, Pneumonia, Respiratory infection, Heart disease, Venereal disease Host 37 USA 41.3 Public Gc00017 000593_GCAT 272561 45 637000064 1042 895 1 0 NC_000117, AE001273 NCBI, Stanford Univ, GIB, IBM-Annotation, TIGR Stanford Univ, Univ of California, Berkeley NIH-NIAID Science 282,754-759 October 23, 1998 Stephens RS ctgenome@socrates.berkeley.edu Bacteria Spirochaetes Spirochaetales Spirochaetaceae Treponema Treponema pallidum BACTERIAL Treponema pallidum pallidum Nichols 55.7x Genome SPIROCHAETES Complete complete Pathogen, Anaerobe, Motile, Spiral-shaped, Motile, Mesophile Medical, Human Pathogen Syphilis Host Neurosyphilitic patient in 1912 USA 52.8 Public Gc00016 000594_GCAT 243276 5 637000328 1138 1036 1 0 NC_000919 NCBI, TIGR, IBM-Annotation, GIB, BCM-HGSC Univ of Texas, TIGR, BCM-HGSC NIH-NIAID Science 281,375-388 July 17, 1998 Fraser CM http://www.tigr.org/~cmfraser/ Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis H37Rv (lab strain) 104411 Genome ACTINOBACTERIA Complete complete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile, Nonsporulating, Mesophile Medical, Human Pathogen, Animal Pathogen Tuberculosis Host 37 Human-lung H37 isolate in 1934 United Kingdom 65.6 Public Gc00015 000595_GCAT 83332 224 637000173 4411 4402 1 0 NC_000962 NCBI, Sanger Institute, TIGR, TubercuList, IBM-Annotation, GIB Sanger Institute Wellcome Trust Nature 393,537-544 June 11, 1998 Cole ST stcole@pasteur.fr Archaea Euryarchaeota Thermococcales Thermococcaceae Pyrococcus Pyrococcus horikoshii ARCHAEAL Pyrococcus horikoshii(shinkaj) OT3 163167 Genome EURYARCHAEOTA-THERMOCOCCI Complete complete Obligate anaerobe, Motile, Sulfur respiration, Hyperthermophile Biotechnological None Marine, Hydrothermal vent 7 80 - 102 Hydrothermal vent at Okinawa Trough in the Pacific Ocean at a depth of 1395m Japan 41.9 Public Gc00014 000596_GCAT 70601 207 638154516 1738 1955 1 0 NC_000961 NCBI, Integr8, NITE, AIST, IBM-Annotation, GIB, TIGR Univ of Tokyo, NITE NITE DNA Research 5,55-76 April 30, 1998 Kawarabayasi Y mailto:kawarabayasi.yutaka@aist.go.jp Bacteria Aquificae Aquificales Aquificaceae Aquifex Aquifex aeolicus BACTERIAL Aquifex aeolicus VF5 Genome AQUIFICAE Complete complete Hyperthermophile, Chemolithoautotroph, Facultative, Nonmotile, Aerobe Biotechnological None Marine, Hot spring 96 USA 43.5 Public Gc00013 000597_GCAT 224324 215 637000010 1551 1529 1 1 NC_000918, AE000657 NCBI, IBM-Annotation, TIGR Univ of Illinois at Urbana-Champaign, Diversa DOE, Diversa Nature 392,353-358 March 26, 1998 Swanson RV rswanson@diversa.com Bacteria Spirochaetes Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi B31 267491 ATCC 35210 Genome SPIROCHAETES Complete complete Pathogen, Motile, Spiral-shaped, Aerobe, Microaerophilic, Mesophile Medical, Human Pathogen Lyme disease Host Dilutional cloning from the original Lyme-disease tick isolate USA 28.6 Public Gc00012 000598_GCAT 224326 3 637000036 910 851 1 21 NC_001318, AE000783 NCBI, TIGR, IBM-Annotation, BNL Brookhaven Natl Lab, TIGR NIH Nature 390,580-586 December 11, 1997 Fraser CM http://www.tigr.org/~cmfraser/ Archaea Euryarchaeota Archaeoglobales Archaeoglobaceae Archaeoglobus Archaeoglobus fulgidus ARCHAEAL Archaeoglobus fulgidus VC-16 158735 ATCC 49558, DSM 4304 Genome EURYARCHAEOTA-ARCHAEOGLOBI Complete complete Obligate anaerobe, Motile, Sulfate reducer, Piezophile, Hyperthermophile, Potential Pathogen Biotechnological None Marine 60 - 95 Geothermally heated sea floor at Vulcano Island Italy USA 48.6 Public Gc00011 000599_GCAT 224325 104 638154502 2178 2420 1 0 NC_000917 NCBI, TIGR, Integr8, IBM-Annotation Univ of Illinois at Urbana-Champaign, TIGR DOE Nature 390,364-370 November 27, 1997 TIGR gaf@tigr.org Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus subtilis BACTERIAL Bacillus subtilis 168 103309 Genome FIRMICUTES Complete complete Facultative, Sporulating, Motile, Rod-shaped, Mesophile Biotechnological None Soil 25 - 35 X-ray irradiated strain in Marburg in 1947 International 43.5 Public Gc00010 000600_GCAT 224308 76 637000022 4214 4105 1 0 NC_000964, AL009126 NCBI, SubtiList, SWISS, MICADO, IBM-Annotation, TIGR European Consortium, Japanese Consortium EC Nature 390,249-256 November 20, 1997 Kunst F fkunst@pasteur.fr Archaea Euryarchaeota Methanobacteriales Methanobacteriaceae Methanothermobacter Methanothermobacter thermautotrophicus ARCHAEAL Methanothermobacter thermoautotrophicus Delta H 157113 Genome EURYARCHAEOTA-METHANOBACTERIA Complete complete Methanogen, Obligate anaerobe, Nonmotile, Nonsporulating, Thermophile, Autotroph, Lithotroph Biotechnological, Energy production None Sludge 65 - 70 Sewage sludge in 1971 in Urbana Illinois USA 49.5 Public Gc00009 000601_GCAT 187420 289 638154510 1751 1873 1 0 NC_000916 NCBI, Integr8, IBM-Annotation, TIGR Genome Therapeutics, Ohio State Univ DOE J.Bacteriology 179,7135-7155 November 10, 1997 Smith DR doug.smith@genomecorp.com Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12- MG1655 113559 Genome PROTEOBACTERIA-GAMMA Complete complete Facultative, Motile, Non-Pathogen, Rod-shaped, Nonsporulating, Mesophile Medical None Host, Human intestinal microflora 37 Patient in 1922 USA 50.8 Public Gc00008 000602_GCAT 83333 225 637000106 4639 4243 1 0 NC_000913, U00096 NCBI, SWISS, EcoCyc, Colibri, IBM-Annotation, EcoGene, TIGR Univ of Wisconsin NIH-NHGRI Science 277,1453-1474 September 5, 1997 Blattner FR http://www.genetics.wisc.edu/research/blattner/blattner_f.html Bacteria Proteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori 26695 579300 ATCC 700392 Genome PROTEOBACTERIA-EPSILON Complete complete Pathogen, Motile, Spiral-shaped, Aerobe, Mesophile Medical, Human Pathogen Ulcer, Gastric inflammation Host, Human stomach 37 Patient in the United Kingdom who had gastritis before 1987 USA 38.9 Public Gc00007 000603_GCAT 85962 233 637000132 1667 1576 1 0 NC_000915, AE000511 NCBI, TIGR, IBM-Annotation, PyloriGeneTM TIGR NIH Nature 388,539-547 August 7, 1997 Tomb JF ghp@tigr.org Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae S288C ABI 317495 Genome FUNGI-ASCOMYCOTA Complete complete Mesophile Model organism International 38.1 Public Gc00006 000604_GCAT 4932 13838 638208609 12069 5860 16 0 NC_001133-48 NCBI, SGD, YPD, Genequiz, SWISS, Sanger Institute, IBM-Annotation, GeneDB, ScGI International Collaboration EC, NHGRI, Wellcome Trust, RIKEN Nature 387,5-105 May 29, 1997 Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma pneumoniae BACTERIAL Mycoplasma pneumoniae M129 106752 ATCC 29342 Genome FIRMICUTES Complete complete Facultative, Pathogen, Motile, Mesophile Medical, Human Pathogen Pneumonia, Tracheobronchitis, Respiratory infection Host 37 Patient with atypical pneumonia Germany 40 Public Gc00005 000605_GCAT 272634 99 637000183 816 689 1 0 NC_000912 NCBI, ZMBH, IBM-Annotation, TIGR, Molligen Univ of Heidelberg DFG NAR 24,4420-4449 November 15, 1996 Herrmann R r.herrmann@mail.zmbh.uni-heidelberg.de Archaea Euryarchaeota Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus jannaschii ARCHAEAL Methanocaldococcus jannaschii DSM 2661 112081 ATCC 43067, DSM 2661 Genome EURYARCHAEOTA-METHANOCOCCI Complete complete Obligate anaerobe, Methanogen, Motile, Piezophile, Nonsporulating, Hyperthermophile, Coccus-shaped, Lithotroph Biotechnological, Energy production None Marine, Hydrothermal vent 5.2-7 85 Deep-sea hydrothermal vent in 1982 USA 31.4 Public Gc00004 000606_GCAT 243232 102 638154505 1664 1729 1 2 NC_000909, NC_001732, NC_001733 NCBI, Integr8, TIGR, Genequiz, IBM-Annotation TIGR, Univ of Illinois at Urbana-Champaign NASA, DOE, HGS Science 273,1058-1073 September 28, 1996 Venter CJ Bacteria Cyanobacteria Chroococcales unclassified Synechocystis Synechocystis sp. PCC 6803 BACTERIAL Synechocystis sp. PCC6803 123875 PCC6803 Genome CYANOBACTERIA Complete complete Photosynthetic, Ocean carbon cycle, Motile, Photoautotroph, Facultative, Coccus-shaped, Mesophile Biotechnological, Environmental None Aquatic, Fresh water Freshwater lake in 1968 Japan 47.7 Public Gc00003 000607_GCAT 1148 60 637000315 3573 3172 1 4 NC_000911 NCBI, Kazusa, Genequiz, IBM-Annotation, TIGR, CyanoList Kazusa DNA Research Institute KDRI DNA Res 3,109-136 June 30, 1996 Tabata S tabata@kazusa.or.jp Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma genitalium BACTERIAL Mycoplasma genitalium G-37 267448 ATCC 33530 Genome FIRMICUTES Complete complete Facultative, Pathogen, Motile, Nonsporulating, Parasite, Mesophile Medical, Human Pathogen, Animal Pathogen Urogenital infection, Respiratory infection, Non-gonococcal urethritis Urogenital tract, Host 37 Urethral specimen from a male patient with nongonococcal urethritis USA 31.7 Public Gc00002 000608_GCAT 243273 97 637000176 580 477 1 0 NC_000908 NCBI, TIGR, Genequiz, IBM-Annotation, Molligen TIGR DOE, HGS, NIH Science 270,397-403 October 20, 1995 Fraser CM http://www.tigr.org/~cmfraser/ Bacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae Rd (KW20) 136115 ATCC 51907 Genome PROTEOBACTERIA-GAMMA Complete complete Pathogen, Facultative, Nonmotile, Rod-shaped, Mesophile Medical, Human Pathogen Meningitis, Septicemia, Otitis, Sinusitis, Bronchitis Host, Nasopharyngeal microflora 35 - 37 1890s during an influenza pandemic by Pfeiffer USA 38.1 Public Gc00001 000609_GCAT 71421 219 637000126 1830 1657 1 0 NC_000907, L42023 NCBI, TIGR, Genequiz, SWISS, LANL, IBM-Annotation TIGR HGS, ACS Science 269,496-512 July 28, 1995 Venter CJ Bacteria Firmicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma laidlawii BACTERIAL Acholeplasma laidlawii PG-8A Genome FIRMICUTES incomplete incomplete Facultative, Mesophile Biotechnological None Soil, Wastewater, Host 37 Russia Public Gi01961 002588_GCAT 441768 19259 RIPCM Bacteria Acidobacteria unclassified unclassified unclassified uncultured Acidobacteria bacterium BACTERIAL Acidobacteria sp F11 Genome ACIDOBACTERIA incomplete incomplete Acidophile, Chemoorganotroph, Aerobe, Heterotroph, Nonmotile, Rod-shaped, Nonsporulating, Mesophile Bioremediation, Environmental None Soil, Aquatic USA Public Gi01673 000612_GCAT 171953 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Acidobacteria unclassified unclassified unclassified uncultured Acidobacteria bacterium BACTERIAL Acidobacteria sp B6 Genome ACIDOBACTERIA incomplete incomplete Acidophile, Chemoorganotroph, Aerobe, Heterotroph, Nonmotile, Rod-shaped, Nonsporulating, Mesophile Bioremediation, Environmental None Soil, Aquatic USA Public Gi01674 000613_GCAT 171953 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus ferrooxidans BACTERIAL Acidithiobacillus ferrooxidans ATCC-23270 Genome PROTEOBACTERIA-GAMMA complete incomplete Obligate chemoautolithotroph, Obligate anaerobe, Motile, Acidophile, Rod-shaped, Iron oxidizer, Mesophile Environmental, Bioremediation, Bioleaching None Acid mine drainage USA 56 Public Gi00003 000614_GCAT 243159 2900 NCBI TIGR DOE Tettelin HS http://www.tigr.org/~tettelin/ Bacteria Proteobacteria Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus ferrooxidans BACTERIAL Acidithiobacillus ferrooxidans ATCC 23270 Genome PROTEOBACTERIA-GAMMA incomplete incomplete Obligate chemoautolithotroph, Obligate anaerobe, Motile, Acidophile, Rod-shaped, Iron oxidizer Environmental, Bioremediation, Bioleaching None Acid mine drainage USA 56 Proprietary Gi00002 000615_GCAT 243159 2611 2711 Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Bacteria Acidobacteria Acidobacteriales Acidobacteriaceae Acidobacterium Acidobacterium capsulatum BACTERIAL Acidobacterium capsulatum ATCC 51196 Genome ACIDOBACTERIA incomplete incomplete Acidophile, Chemoorganotroph, Aerobe, Heterotroph, Nonmotile, Rod-shaped, Nonsporulating Biotechnological, Bioremediation, Environmental None Soil, Aquatic, Acid mine drainage 30 Acidic mine drainage in Yanahara mine Okayama Japan USA Public Gi00004 000616_GCAT 240015 1 4200 TIGR NSF Ward NL nward@tigr.org Bacteria Acidobacteria Acidobacteriales Acidobacteriaceae Acidobacterium uncultured Acidobacterium sp. BACTERIAL Acidobacterium sp. Genome ACIDOBACTERIA incomplete incomplete Acidophile, Chemoorganotroph, Aerobe, Heterotroph, Nonmotile, Rod-shaped, Nonsporulating Bioremediation, Environmental, Biotechnological None Soil, Aquatic USA Public Gi00005 000617_GCAT 114706 Lawrence Livermore National Lab, Diversa Kuske CR kuske@lanl.gov Bacteria Proteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax temperans BACTERIAL Acidovorax temperans Genome PROTEOBACTERIA-BETA incomplete incomplete Aerobe, Rod-shaped, Motile, Nonsporulating Biotechnological None New Zealand Public Gi01474 000618_GCAT 80878 Univ of Auckland, NZ unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial communities from Nova Scotia coast surface waters Metagenome ENVIRONMENTAL-MARINE incomplete incomplete None Marine USA Public Gm00020 000619_GCAT TIGR NSF Heidelberg J http://www.tigr.org/faculty/Heidelberg_John/index.shtml unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Air microbial communities from New York Metagenome ENVIRONMENTAL-AIR incomplete incomplete USA Public Gm00021 000620_GCAT J Craig Venter Institute Alfred P. Sloan Foundation unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial communities from planktonic and surface waters Metagenome ENVIRONMENTAL-MARINE incomplete incomplete Marine USA Public Gm00101 002967_GCAT 1600000 J Craig Venter Institute, Australian Genome Alliance Australian Research Council, J Craig Venter Institute unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Aquatic microbial communities from Antarctic Lake Metagenome ENVIRONMENTAL-AQUATIC incomplete incomplete USA Public Gm00102 002968_GCAT 500000 J Craig Venter Institute, Australian Genome Alliance DOE, J Craig Venter Institute unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil microbial communities from contaminated sediments Metagenome ENVIRONMENTAL-SOIL incomplete incomplete Gasoline and/or ethanol contaminated soil in Brazil Brazil Public Gm00103 002969_GCAT Univ Federal de Santa Catarina CNPq unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial communities from English Channel site L4 seasonal and inter-annual variability Metagenome ENVIRONMENTAL-MARINE incomplete incomplete Marine English Channel site L4 (50.25 N, 4.216 W) and on the Atlantic Meridional Transect (AMT) United Kingdom Public Gm00104 002970_GCAT Plymouth Marine Laboratory, Centre for Ecology & Hydrology NERC unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine viral communities Metagenome ENVIRONMENTAL-MARINE incomplete incomplete Marine United Kingdom Public Gm00105 002971_GCAT Plymouth Marine Laboratory, Centre for Ecology & Hydrology NERC unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine and Aquatic ammonia oxidizing bacterial (AOB) communities under pertubations in Carbon Dioxide Metagenome ENVIRONMENTAL-AQUATIC incomplete incomplete Marine and freshwater environments United Kingdom Public Gm00106 002972_GCAT Univ of Aberdeen, Univ of Newcastle, Univ of Warwick, Centre for Ecology & Hydrology NERC unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial communities from sediment Metagenome ENVIRONMENTAL-SOIL incomplete incomplete United Kingdom Public Gm00107 002973_GCAT Cardiff Univ, Centre for Ecology & Hydrology NERC unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine cyanobacterial communities from coastal water Metagenome ENVIRONMENTAL-MARINE incomplete incomplete None Marine, Coastal Coastal waters USA Public Gm00117 003078_GCAT UCSD NSF Palenik B bpalenik@ucsd.edu unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial communities from the Colne Estuary sediments Metagenome ENVIRONMENTAL-SOIL incomplete incomplete Sediment Estuarine sediments in the Colne estuary United Kingdom Public Gm00108 002974_GCAT Univ of Sheffield, Univ of Essex, Centre for Ecology & Hydrology NERC unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil Fungal communities from boreal forest Metagenome ENVIRONMENTAL-SOIL incomplete incomplete Soil Boreal forest soil USA Public Gm00109 002975_GCAT Univ of Alaska Fairbanks NSF Taylor L http://mercury.bio.uaf.edu/%7Elee_taylor/ unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil microbial communities from four geographic locations Metagenome ENVIRONMENTAL-SOIL incomplete incomplete Soil Soils collected from different sites within the Western Hemisphere (Brazil, Canada, Florida, and Illinois) USA Public Gm00123 003101_GCAT 18561 Univ of Florida unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Daphnia pulex microbiome Daphnia pulex Metagenome ENDOBIOTIC-INSECTS incomplete incomplete None International Public Gm00110 002976_GCAT Daphnia Genomics Consortium Ebert D dieter.ebert@unibas.ch unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil PCBs-degrading microbial communities Metagenome ENVIRONMENTAL-SOIL incomplete incomplete PCB degrading Environmental None Soil USA Public Gm00111 002977_GCAT Michigan State Univ Woo JS sulwoo@msu.edu unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial communities from deep sea hydrothermal vents Metagenome ENVIRONMENTAL-MARINE incomplete incomplete Chemosynthetic Environmental None Marine, Hydrothermal vent Deep sea hydrothermal vents Germany Public Gm00112 002978_GCAT Max Planck Institute, IFM-GEOMAR Meyerdierks A http://www.mpi-bremen.de/en/Anke_Meyerdierks.html unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Gut microbiome of Human healthy adults Homo sapiens Metagenome ENDOBIOTIC-HUMAN incomplete incomplete Medical None Host, Gut Healthy human gut France Public Gm00022 000621_GCAT 20195 EU057993-EU062184 Genoscope Genoscope, INRA Samain S samain@genoscope.cns.fr unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Gut microbiome of Human with Crohn's Disease Homo sapiens Metagenome ENDOBIOTIC-HUMAN incomplete incomplete Medical None Host, Gut Fecal sample from patients with Crohn's disease France Public Gm00039 001298_GCAT 20193 EU062185-EU068001 Genoscope, INRA Samain S samain@genoscope.cns.fr unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Sand microbial communities from Pacific Beach Metagenome ENVIRONMENTAL-SAND incomplete incomplete Environmental None Sea sand Pacific Beach in San Diego California USA Public Gm00026 000622_GCAT 13729 3107 2562 BCM-HGSC unclassified unclassified unclassified unclassified unclassified epibiont metagenome MICROBIAL Alvinella pompejana microbiome from the East Pacific Rise hydrothermal vent Alvinella pompejana Metagenome ENDOBIOTIC-WORMS incomplete incomplete Symbiont None Host, Deep sea, Hydrothermal vent 20 - 80 Black smoker chimneys on East Pacific Rise (9deg 50.4', 104deg 17.4' W) at a depth of 2500m USA Public Gm00023 000623_GCAT 408171 17241 Univ of Delaware, Desert Research Institute Univ of Delaware, Symbio Corp NSF Cary C Caryc@udel.edu unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Acid Mine Drainage microbial communities from Richmond mine Metagenome ENVIRONMENTAL-EXTREME complete complete Acidic, Metal tolerance, Pink biofilm Biotechnological, Environmental None Acid mine, High metal concentration, Biofilm 0.83-1.28 38-42 Richmond mine at Iron Mountain California USA Public Gm00001 000624_GCAT 20823 2001200000 10830 12559 AADL00000000, AAWO00000000 NCBI, Joint Genome Institute, Univ of California, Berkeley Joint Genome Institute, Univ of California, Berkeley DOE, NSF Nature 428, 37-43 March 4, 2004 Banfield JF jill@eps.berkeley.edu unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial communities from Sargasso Sea Metagenome ENVIRONMENTAL-MARINE complete complete Saline, Oligotroph Environmental, MMI None Surface water, Marine Bermuda Atlantic Time-series Study site (BATS) USA Public Gm00002 000625_GCAT 1600000 NCBI, JCVI J Craig Venter Institute Moore Foundation Science 304, 66-74 April 2, 2004 Venter JC jcventer@tcag.org unclassified unclassified unclassified unclassified unclassified marine metagenome MICROBIAL Marine microbial communities from Global Ocean Sampling (GOS) Metagenome ENVIRONMENTAL-MARINE complete complete Saline, Oligotroph Environmental, MMI None Surface water, Marine USA Public Gm00080 002675_GCAT 408172 19733 6123395 AACY000000000 NCBI, CAMERA J Craig Venter Institute Moore Foundation PLoS Biology 5, e77 April 8, 2007 Venter JC jcventer@tcag.org unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil microbial communities from Minnesota Farm Metagenome ENVIRONMENTAL-SOIL complete complete Environmental, Agricultural None Soil 6-7 Surface soil (0-10 cm) from a farm in Waseca County Minnesota in 2001 USA Public Gm00003 000626_GCAT 13699 2001200001 100000 AAFX01000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Science 308, 554-7 April 22, 2005 Rubin EM emrubin@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Metagenome ENVIRONMENTAL-FOSSIL complete complete Halophile, Barophile Environmental None Marine, Biofilm, Seafloor Rib bone of a gray whale carcass at 1674 meters depth in the Santa Cruz Basin of the Pacific Ocean USA Public Gm00004 000627_GCAT 13700 94937 122145 AAGA00000000, AAFZ00000000, AAFY01000000 IMG/M, IMG/M, IMG/M, NCBI Joint Genome Institute DOE Science 308, 554-7 April 22, 2005 Rubin EM emrubin@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Simulated microbial communities from 113 complete and draft JGI genomes Metagenome SYNTHETIC-SIMULATED complete complete None USA Public Gm00114 003000_GCAT 262860 352230 JGI-FAMeS Joint Genome Institute DOE Nature Methods 4, 495-500 June 1, 2007 Mavrommatis K http://bugmaster.jgi-psf.org/people/kmavromm/GenomeBiology/Content/Mavrommatis.htm unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fossil microbiome from Pleistocene Cave Bears Metagenome ENVIRONMENTAL-FOSSIL complete complete USA Public Gm00024 000628_GCAT 19671 1000 Joint Genome Institute, Max Planck Institute DOE Science 309, 597-9 July 22, 2005 Rubin EM emrubin@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Sediment microbial communities from DOE Hanford Site with nuclear contamination Metagenome ENVIRONMENTAL-EXTREME complete incomplete Sediment Contaminated sediments beneath a leaking high-level radioactive waste tank at the DOE Hanford Site USA Public Gm00025 000629_GCAT 13388 Argonne National Laboratory Joint Genome Institute DOE Brockman F http://www.sysbio.org/resources/staff/brockman.stm unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Aquatic microbial communities from South Africa Goldmine Metagenome ENVIRONMENTAL-AQUATIC incomplete incomplete None Aquatic, Groundwater 8,000 ft below the surface from a South African gold mine in the Witwatersrand Basin USA 62 Public Gm00027 000630_GCAT Joint Genome Institute Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified soil metagenome MICROBIAL Soil microbial communities from Wetland Metagenome ENVIRONMENTAL-SOIL incomplete incomplete Soil Freshwater wetland soils, including from the Florida Everglades, and North Carolina pocosin bogs, and riverine and non-riverine swamps USA 62 Public Gm00082 002677_GCAT 410658 18833 Duke Univ unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Coral reefs microbiome from the Northern Line Islands Metagenome ENDOBIOTIC-CORALS incomplete incomplete USA 62 Public Gm00083 002678_GCAT SDSU Dinsdale E Elizabeth_dinsdale@hotmail.com unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial community from San Diego solar salterns Metagenome ENVIRONMENTAL-MARINE incomplete incomplete Halophile Marine, Solar saltern USA Public Gm00084 002679_GCAT SDSU Rodriguez Brito B brodrigu@rohan.sdsu.edu unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Stromatolites microbial communities Metagenome ENVIRONMENTAL incomplete incomplete USA Public Gm00085 002680_GCAT SDSU Desnues C cdesnues@yahoo.fr unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Aquatic microbial communities from Tilapia ponds Metagenome ENVIRONMENTAL-AQUATIC incomplete incomplete USA Public Gm00086 002681_GCAT SDSU Li L linlinli99013@gmail.com unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Coral Porites astreoides microbiome Porites astreoides Metagenome ENDOBIOTIC-CORALS incomplete incomplete Symbiont USA Public Gm00087 002682_GCAT SDSU Wegley L lwegley@gmail.com unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Mosquitos viriome Mosquito Metagenome ENDOBIOTIC-VIRAL incomplete incomplete Symbiont USA Public Gm00088 002683_GCAT SDSU Chau B betia_too@yahoo.com unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Coral Porites compressa microbiome Porites compressa Metagenome ENDOBIOTIC-CORALS incomplete incomplete Symbiont USA Public Gm00089 002684_GCAT SDSU Vega R rvega@mail.sdsu.edu unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Lung viriome of Human Metagenome ENDOBIOTIC-VIRAL incomplete incomplete Host, Lung USA Public Gm00090 002685_GCAT SDSU Furlan M mikefurlan@gmail.com unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Endophytic Frankia community of Plant roots Coriaria arborea Metagenome ENDOBIOTIC-PLANTS incomplete incomplete Symbiont, Nitrogen fixation USA Public Gm00091 002686_GCAT Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine anaerobic ammonium oxidizing (anammox) community Metagenome ENVIRONMENTAL-MARINE incomplete incomplete Anaerobe, Ammonia-oxidizer None Deep sea, Marine USA Public Gm00092 002754_GCAT Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Biogas-producing microbial community from Bioreactor Metagenome SYNTHETIC-BIOREACTOR incomplete incomplete Anaerobe Biotechnological None USA Public Gm00093 002755_GCAT Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Wastewater treatment type I Accumulibacter community from Bioreactor Metagenome SYNTHETIC-BIOREACTOR incomplete incomplete USA Public Gm00094 002756_GCAT Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Extreme microbial communities from Yellowstone National Park Metagenome ENVIRONMENTAL-EXTREME incomplete incomplete Hydrogen oxidizer, Thermophile Biotechnological, Energy production, Bioenergy, Biohydrogen None Extreme microbial habitats from 20 different sites at Yellowstone National Park (YNP) USA Public Gm00095 002757_GCAT Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Air microbial communities from Singapore indoor air filters Metagenome ENVIRONMENTAL-AIR incomplete incomplete Biodefense None Air Filters from air handling units USA Public Gm00096 002934_GCAT Joint Genome Institute, Genome Institute of Singapore DOE Ruan Y ruanyj@gis.a-star.edu.sg unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Aquatic methylotrophic communities from Lake Washington sediments Metagenome ENVIRONMENTAL-AQUATIC incomplete incomplete None Aquatic, Lake, Sediment Stable Isotope Probing with C1 compounds USA Public Gm00097 002935_GCAT Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Aquatic microbial communities from Yellowstone Bison Hot Spring Pool thermal gradient Metagenome ENVIRONMENTAL-AQUATIC incomplete incomplete Thermophile None Aquatic Bison pool in Yellowstone National Park USA Public Gm00098 002936_GCAT Joint Genome Institute DOE Shock E eshock@asu.edu unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil microbial communities associated with greenhouse gases Metagenome ENVIRONMENTAL-SOIL incomplete incomplete None Soil USA Public Gm00121 003098_GCAT Michigan State Univ, Kellogg Biological Station NSF unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine viral communities from deep-sea hydrothermal vents Metagenome ENVIRONMENTAL-MARINE incomplete incomplete Thermophile None Marine, Hot spring USA Public Gm00120 003097_GCAT Univ of Delaware NSF Wommack K wommack@dbi.udel.edu unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Aquatic microbial communities from Yellowstone Bath Hot Springs Metagenome ENVIRONMENTAL-EXTREME incomplete incomplete Thermophile None Aquatic, Hot spring USA Public Gm00118 003082_GCAT 30941 44668 Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Oral TM7 microbial communities of Human healthy adults Metagenome ENDOBIOTIC-HUMAN incomplete complete Medical None Host, Human oral microflora Single cell amplification from Human subgingival crevice USA Public Gm00119 003096_GCAT 3450 4078 NZ_ABBV00000000, NZ_ABBW00000000, NZ_ABBX00000000 Joint Genome Institute, Stanford Univ DOE PNAS 104, 11889-94 June 8, 2007 Quake S http://med.stanford.edu/profiles/frdActionServlet?choiceId=printerprofile&fid=6281 unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial communities from Guerrero Negro hypersaline mats Metagenome ENVIRONMENTAL-EXTREME incomplete incomplete Photosynthetic, Halophile Evolutionary, Environmental, Ecological None Hypersaline mats Guerrero Negro mats USA Public Gm00009 001330_GCAT Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified human gut metagenome MICROBIAL Gut microbiome of Human healthy infants and adults GSS Homo sapiens Metagenome ENDOBIOTIC-HUMAN incomplete incomplete None USA Public Gm00116 003004_GCAT 408170 20077 Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Endophytic microbial communities of pepper bark tree Warburgia ugandensis Metagenome ENDOBIOTIC-PLANTS incomplete incomplete Agricultural, Medical None Austria Public Gm00115 003003_GCAT Univ of Wien Mitter B birgit.reiter@arcs.ac.at unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine phototrophic picoeukaryotic community Metagenome ENVIRONMENTAL-MARINE incomplete incomplete None Marine USA Public Gm00099 002937_GCAT Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Gut microbiome of Human healthy Japanese infants and adults Homo sapiens Metagenome ENDOBIOTIC-HUMAN incomplete incomplete None Host Japan Public Gm00100 002938_GCAT 727000 Univ of Tokyo Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine Beggiatoa community from coastal sediments Metagenome ENVIRONMENTAL-MARINE incomplete incomplete Filament-shaped, Sulphide oxidizer Biotechnological None Marine, Coastal, Sediment Germany Public Gm00034 002690_GCAT Max Planck Institute, Center for Genomic Sciences Mussmann M mmussman@mpi-bremen.de Eukaryota Chordata Proboscidea Elephantidae Mammuthus Mammuthus primigenius MICROBIAL Fossil microbiome from Mammuthus primigenius Metagenome ENVIRONMENTAL-FOSSIL complete complete Fossil remains from Lake Taimyr in Siberia USA Public Gm00028 000631_GCAT 37349 16317 28000 NCBI McMaster Univ DOE Science 311, 392-4 January 20, 2006 Poinar, HN poinarh@mcmaster.ca unclassified unclassified unclassified unclassified unclassified fossil metagenome MICROBIAL Fossil microbiome from Mammuthus primigenius 454 Metagenome ENVIRONMENTAL-FOSSIL incomplete complete Russian Bol'shaya Kolopatkaya river, 70 N, 151 E" Germany Public Gm00122 003100_GCAT 444079 17621 CAAM00000000 Max Planck Institute PNAS 103, 13578-84 September 12, 2006 Paabo S http://email.eva.mpg.de/~paabo/ unclassified unclassified unclassified unclassified unclassified marine sediment metagenome MICROBIAL Marine archaeal anaerobic methane oxidation (AOM) communities from Eel River sediments Metagenome ENVIRONMENTAL-MARINE complete complete Methane oxidation, Anaerobe, Sulfate reducer Environmental None Marine, Deep sea, Sediment 6- to 9-cm-deep sediment pushcore interval (PC45) obtained from the Eel River Basin off the Mendocino California coastline USA Public Gm00005 000632_GCAT 412755 13702 2004175001 2116 2332 AY714814-AY714873 NCBI, Joint Genome Institutes Joint Genome Institute, MBARI DOE Science 305, 1457-62 September 3, 2004 DeLong EF http://web.mit.edu/be/people/delong.htm Bacteria Proteobacteria Rhodospirillales Acetobacteraceae Acidiphilium Acidiphilium multivorum BACTERIAL Acidiphilium multivorum AIU301 NBRC 100883 Genome PROTEOBACTERIA-ALPHA incomplete incomplete Acidophile, Chemoorganotroph, Rod-shaped, Motile, Aerobe Biotechnological, Bioremediation None Aquatic Pyritic acid mine drainage Japan Public Gi01298 000633_GCAT 62140 NITE NITE Bacteria Proteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter baylyi BACTERIAL Acinetobacter baylyi ADP1 ATCC 33305 Genome PROTEOBACTERIA-GAMMA incomplete incomplete Aerobe, Nonmotile, Heterotroph, Chemoheterotroph, Rod-shaped Biotechnological None Soil, Sludge USA 40.4 Proprietary Gi00009 000634_GCAT 202950 3583 3356 Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Bacteria Proteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter baumannii BACTERIAL Acinetobacter baumannii Genome PROTEOBACTERIA-GAMMA complete incomplete Pathogen, Aerobe, Nonmotile, Heterotroph, Chemoheterotroph, Rod-shaped Medical, Human Pathogen Nosocomial infection, Pneumonia Aquatic USA 40 Proprietary Gi00007 000635_GCAT 470 Genome Therapeutics Bacteria Proteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter baumannii BACTERIAL Acinetobacter baumannii AB0057 Genome PROTEOBACTERIA-GAMMA incomplete incomplete Pathogen, Aerobe, Nonmotile, Heterotroph, Chemoheterotroph, Rod-shaped Medical, Human Pathogen Nosocomial infection, Pneumonia Aquatic USA 40 Public Gi02526 003252_GCAT 470 21111 Case Western Reserve Univ Bacteria Proteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter baumannii BACTERIAL Acinetobacter baumannii VEB Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Aerobe, Nonmotile, Heterotroph, Chemoheterotroph, Rod-shaped Medical, Human Pathogen Nosocomial infection, Pneumonia Aquatic France 40 Public Gi00741 000636_GCAT 470 13000 Genoscope Genoscope Bacteria Proteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter baumannii BACTERIAL Acinetobacter baumannii SDF Genome PROTEOBACTERIA-GAMMA incomplete incomplete Pathogen, Aerobe, Nonmotile, Heterotroph, Chemoheterotroph, Rod-shaped Medical, Human Pathogen Nosocomial infection, Pneumonia Aquatic France 40 Public Gi00742 000637_GCAT 470 13001 Genoscope Genoscope Bacteria Proteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter baumannii BACTERIAL Acinetobacter baumannii ICU Genome PROTEOBACTERIA-GAMMA incomplete incomplete Pathogen, Aerobe, Nonmotile, Heterotroph, Chemoheterotroph, Rod-shaped Medical, Human Pathogen Nosocomial infection, Pneumonia Host Hospital Italy Public Gi01666 000638_GCAT 405416 17827 CNR - National Research Council Bacteria Proteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter baylyi BACTERIAL Acinetobacter baylyi ADP1 Genome PROTEOBACTERIA-GAMMA complete incomplete Aerobe, Nonmotile, Heterotroph, Chemoheterotroph, Rod-shaped Biotechnological None Soil, Sludge France 40.3 Public Gi01508 000640_GCAT 202950 3598 3325 1 0 Genoscope Genoscope Barbe V vbarbe@genoscope.cns.fr Bacteria Proteobacteria Pasteurellales Pasteurellaceae Aggregatibacter Aggregatibacter actinomycetemcomitans BACTERIAL Actinobacillus actinomycetemcomitans HK1651 Genome PROTEOBACTERIA-GAMMA complete incomplete Pathogen, Facultative, Nonmotile, Rod-shaped Medical, Human Pathogen, Animal Pathogen Periodontal infection, Periodontitis Oral microflora, Host USA 37 Public Gi00010 000641_GCAT 272556 37 2105 NCBI, Univ of Oklahoma, Microgen, LANL Univ of Oklahoma NIH-NIDCR Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Bacteria Proteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus pleuropneumoniae BACTERIAL Actinobacillus pleuropneumoniae 4074 1 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Facultative, Nonmotile, Virulent, Parasite, Rod-shaped Medical, Swine Pathogen, Animal Pathogen Pleuropneumonia Host, Respiratory tract 37 USA 41.4 Public Gi00011 000642_GCAT 228399 198 638341004 2292 2132 NZ_AACK00000000 NCBI, Microgen Univ of Oklahoma Dyer DW David-Dyer@ouhsc.edu Bacteria Proteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus pleuropneumoniae BACTERIAL Actinobacillus pleuropneumoniae JL03 3 Genome PROTEOBACTERIA-GAMMA incomplete incomplete Pathogen, Facultative, Nonmotile, Virulent, Parasite, Rod-shaped Medical, Swine Pathogen, Animal Pathogen Pleuropneumonia Host, Respiratory tract China Public Gi01949 002575_GCAT 434271 19135 Huazhong Agricultural Univ Bacteria Proteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus pleuropneumoniae BACTERIAL Actinobacillus pleuropneumoniae serovar 5 Genome PROTEOBACTERIA-GAMMA incomplete incomplete Pathogen, Facultative, Nonmotile, Virulent, Parasite, Rod-shaped Medical, Swine Pathogen, Animal Pathogen Necrotizing pleuropneumonia Host Canada 37 Public Gi00012 000643_GCAT 44294 200 2159 NCBI Institute for Biological Sciences Nash J http://endeavour.bio.nrc.ca/index.php Bacteria Proteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus pleuropneumoniae BACTERIAL Actinobacillus pleuropneumoniae serovar 7 Genome PROTEOBACTERIA-GAMMA incomplete incomplete Pathogen, Facultative, Nonmotile, Virulent, Parasite, Rod-shaped Medical, Swine Pathogen, Animal Pathogen Necrotizing pleuropneumonia Host USA 37 Public Gi00013 000644_GCAT 209841 332 2075 NCBI, Microgen Univ of Oklahoma Dyer DW David-Dyer@ouhsc.edu Bacteria Actinobacteria Actinomycetales Actinomycetaceae Actinomyces Actinomyces naeslundii BACTERIAL Actinomyces naeslundii MG1 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Anaerobe, Nonmotile, Nonsporulating, Rod-shaped Medical, Human Pathogen, Dental Pathogen Periodontal infection, Actinomycosis, Gingivitis Host USA Public Gi00014 000647_GCAT 240017 12510 3000 TIGR NIH-NIDCR Read TD http://www.tigr.org/~tread/ Bacteria Actinobacteria Actinomycetales Actinomycetaceae Actinomyces Actinomyces odontolyticus BACTERIAL Actinomyces odontolyticus DSM 43331 ABI, 454 DSM 43331, ATCC 17982 Genome ACTINOBACTERIA Draft incomplete Pathogen, Facultative, Nonmotile, Nonsporulating, Rod-shaped Medical, Human Pathogen, Dental Pathogen, HGMI Oral abscesses, Septicemia, Eye infection, Lung infection Host, Human oral microflora, Human intestinal microflora Human dental cavity USA 65.4 Public Gi01705 000648_GCAT 411466 18171 640963058 2393 NZ_AAYI00000000 NCBI, Washington Univ Washington Univ Bacteria Firmicutes Clostridiales Clostridiaceae unclassified Bryantella formatexigens BACTERIAL Actinomyces odontolyticus I-52, DSM 14469 ABI, 454 DSM 14469 Genome FIRMICUTES incomplete incomplete Cellulose degrader, Mesophile, Anaerobe, Nonmotile, Nonsporulating, Rod-shaped Medical, HGMI None Host, Human intestinal microflora Human feces USA Public Gi02527 003253_GCAT 168384 21051 Washington Univ Bacteria Actinobacteria Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium adolescentis BACTERIAL Bifidobacterium adolescentis L2-32 ABI, 454 11.7x Genome ACTINOBACTERIA Draft incomplete Non-Pathogen, Anaerobe, Nonmotile, Nonsporulating, Rod-shaped Medical, HGMI None Host, Human intestinal microflora 37 Infant feces USA Public Gi01706 000649_GCAT 411481 18197 640963015 2385 NZ_AAXD00000000 NCBI, Washington Univ Washington Univ Bacteria Actinobacteria Coriobacteriales Coriobacteriaceae Collinsella Collinsella aerofaciens BACTERIAL Collinsella aerofaciens JCM 10188 ABI, 454 19x ATCC 25986, CCUG 28087, DSM 3979, KCTC 3647 Genome ACTINOBACTERIA Draft incomplete Non-Pathogen, Anaerobe, Nonmotile, Nonsporulating, Rod-shaped Medical, HGMI None Host, Human intestinal microflora Human feces USA 60.3 Public Gi01707 000650_GCAT 411903 18167 640612206 2400 2367 NZ_AAVN00000000 NCBI, Washington Univ Washington Univ Bacteria Firmicutes Clostridiales Clostridiaceae unclassified Subdoligranulum variabile BACTERIAL Subdoligranulum variabile DSM 15176 ABI, 454 DSM 15176 Genome FIRMICUTES incomplete incomplete Non-Pathogen, Anaerobe, Nonmotile, Nonsporulating Medical, HGMI None Host, Human intestinal microflora 37 Human feces USA Public Gi01708 000651_GCAT 411471 18181 Washington Univ Washington Univ Bacteria Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides caccae BACTERIAL Bacteroides caccae ATCC 43185 ABI, 454 ATCC 43185 Genome BACTEROIDETES Draft incomplete Pathogen, Anaerobe, Nonmotile, Nonsporulating, Rod-shaped Medical, Human Pathogen, HGMI Inflammatory bowel disease Host, Human intestinal microflora 37 USA 41.9 Public Gi01709 000652_GCAT 411901 18163 640963023 4575 NZ_AAVM00000000 NCBI, Washington Univ Washington Univ Bacteria Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides coprocola BACTERIAL Bacteroides coprocola M16, DSM 17136 ABI, 454 DSM 17136 Genome BACTEROIDETES incomplete incomplete Anaerobe, Nonmotile, Nonsporulating, Rod-shaped, Mesophile Medical, HGMI None Host, Human intestinal microflora USA Public Gi02355 003083_GCAT 470145 20521 Washington Univ Bacteria Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides intestinalis BACTERIAL Bacteroides intestinalis 341, DSM 17393 ABI, 454 DSM 17393, JCM 13265 Genome BACTEROIDETES incomplete incomplete Anaerobe, Nonmotile, Nonsporulating, Rod-shaped, Mesophile Medical, HGMI None Host, Human intestinal microflora Human feces USA Public Gi02356 003084_GCAT 471870 20523 Washington Univ Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium sporogenes BACTERIAL Clostridium sporogenes ATCC 15579 ABI, 454 ATCC 15579 Genome FIRMICUTES incomplete incomplete Anaerobe, Sporulating, Rod-shaped, Mesophile Medical, HGMI None Host, Human intestinal microflora USA Public Gi02358 003086_GCAT 471871 20549 Washington Univ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Proteus Proteus penneri BACTERIAL Proteus penneri ATCC 35198 ABI, 454 ATCC 35198 Genome FIRMICUTES incomplete incomplete Anaerobe, Nonsporulating, Rod-shaped, Mesophile, Opportunistic Pathogen, Motile Medical, HGMI Opportunisitc urinary tract infection, Surgical wound infection, Septicemia Host, Human intestinal microflora 37 Human feces USA Public Gi02361 003089_GCAT 471881 20551 Washington Univ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Providencia Providencia stuartii BACTERIAL Providencia stuartii ATCC 25827 ABI, 454 ATCC 35198 Genome PROTEOBACTERIA-GAMMA incomplete incomplete Anaerobe, Nonsporulating, Rod-shaped, Mesophile, Opportunistic Pathogen, Motile Medical, HGMI Opportunisitc urinary tract infection, Surgical wound infection, Septicemia Host, Human intestinal microflora 37 Human feces USA Public Gi02362 003090_GCAT 471874 20553 Washington Univ Bacteria Firmicutes Clostridiales Lachnospiraceae Ruminococcus Ruminococcus lactaris BACTERIAL Ruminococcus lactaris ATCC 29176 ABI, 454 ATCC 29176 Genome FIRMICUTES incomplete incomplete Anaerobe, Nonsporulating, Rod-shaped, Mesophile, Nonmotile Medical, HGMI None Host, Human intestinal microflora 37 Human feces USA Public Gi02363 003091_GCAT 471875 20557 Washington Univ Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus infantarius BACTERIAL Streptococcus infantarius infantarius ATCC BAA-102 ABI, 454 ATCC BAA-102, LMG 19578, CCUG 43820 Genome FIRMICUTES incomplete incomplete Facultative, Nonsporulating, Coccus-shaped, Mesophile, Nonmotile Medical, HGMI None Host, Human intestinal microflora 37 Feces from a health human infant USA Public Gi02364 003092_GCAT 471872 20527 Washington Univ Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes M49, NZ131 M49 ABI Genome FIRMICUTES incomplete incomplete Facultative, Nonsporulating, Coccus-shaped, Mesophile, Nonmotile, Pathogen Medical, Human Pathogen Glomerulonephritis Host Patient with acute glomerulonephritis USA Public Gi02365 003093_GCAT 471876 20707 Washington Univ Bacteria Actinobacteria Actinomycetales Streptomycetaceae Streptomyces Streptomyces clavuligerus BACTERIAL Streptococcus clavuligerus ATCC 27064 ABI ATCC 27064, NRRL 3585 Genome ACTINOBACTERIA incomplete incomplete Aerobe, Sporulating, Mesophile, Nonmotile Medical, Human Pathogen Glomerulonephritis Host 25 - 35 Korea Public Gi02366 003094_GCAT 443255 19249 KRIBB Bacteria Bacteroidetes Bacteroidales Porphyromonadaceae Parabacteroides Parabacteroides merdae BACTERIAL Parabacteroides merdae ATCC 43184 ABI, 454 7.1x ATCC 43184 Genome BACTEROIDETES Draft incomplete Non-Pathogen, Anaerobe, Nonmotile, Nonsporulating, Rod-shaped, Mesophile Medical, HGMI None Host, Human intestinal microflora Human feces USA 45.3 Public Gi01710 000653_GCAT 411477 18193 640963016 4431 4384 NZ_AAXE00000000 NCBI, Washington Univ Washington Univ Bacteria Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides ovatus BACTERIAL Bacteroides ovatus ATCC 8483 ABI, 454 6.9x ATCC 8483 Genome BACTEROIDETES Draft incomplete Non-Pathogen, Anaerobe, Nonmotile, Nonsporulating, Rod-shaped Medical, HGMI None Host, Human intestinal microflora USA 41.6 Public Gi01711 000654_GCAT 411476 18191 6463 NZ_AAXF00000000 NCBI, Washington Univ Washington Univ Bacteria Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides uniformis BACTERIAL Bacteroides uniformis ATCC 8492 ABI, 454 8.1x ATCC 8492 Genome BACTEROIDETES Draft incomplete Non-Pathogen, Anaerobe, Nonmotile, Nonsporulating, Rod-shaped Medical, HGMI None Host, Human intestinal microflora USA 46.5 Public Gi01712 000655_GCAT 411479 18195 4717 NZ_AAYH00000000 NCBI, Washington Univ Washington Univ Bacteria Firmicutes Clostridiales Lachnospiraceae Anaerostipes Anaerostipes caccae BACTERIAL Anaerostipes caccae DSM 14662 ABI, 454 8.7x DSM 14662 Genome FIRMICUTES Draft incomplete Non-Pathogen, Anaerobe, Rod-shaped Medical, HGMI None Host, Human intestinal microflora Human feces USA 44.3 Public Gi01713 000656_GCAT 411490 18213 3589 NZ_ABAX00000000 NCBI, Washington Univ Washington Univ Bacteria Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides capillosus BACTERIAL Bacteroides capillosus ATCC 29799 ABI, 454 8.2x ATCC 29799 Genome BACTEROIDETES Draft incomplete Opportunistic Pathogen, Anaerobe, Nonmotile, Nonsporulating, Rod-shaped Medical, HGMI Various infections Host, Human intestinal microflora 37 USA 59.1 Public Gi01714 000657_GCAT 411467 18173 640963014 4241 4833 NZ_AAXG00000000 NCBI, Washington Univ Washington Univ Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium bolteae BACTERIAL Clostridium bolteae ATCC BAA-613 ABI, 454 ATCC BAA-613 Genome FIRMICUTES Draft incomplete Anaerobe, Sporulating, Rod-shaped, Motile Medical, HGMI None Host, Human intestinal microflora Human feces USA 49 Public Gi01715 000658_GCAT 411902 18165 6534 NZ_ABCC00000000 NCBI, Washington Univ Washington Univ Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium scindens BACTERIAL Clostridium scindens ATCC 35704 ABI, 454 ATCC 35704 Genome FIRMICUTES incomplete incomplete Anaerobe, Rod-shaped, Sporulating, Motile Medical, HGMI None Host, Human intestinal microflora Human feces USA Public Gi01716 000659_GCAT 411468 18175 Washington Univ Washington Univ Bacteria Firmicutes unclassified unclassified unclassified Clostridium spiroforme BACTERIAL Clostridium spiroforme DSM 1552 ABI, 454 DSM 1552, ATCC 29900 Genome FIRMICUTES incomplete incomplete Anaerobe, Rod-shaped, Sporulating, Motile Medical, HGMI None Host, Human intestinal microflora Human feces USA Public Gi01922 002546_GCAT 428126 18925 Washington Univ Washington Univ Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium symbiosum BACTERIAL Clostridium symbiosum ATCC 14940 ABI, 454 7.8x ATCC 14940 Genome FIRMICUTES incomplete incomplete Non-Pathogen, Anaerobe, Motile, Sporulating, Rod-shaped Medical, HGMI None Host, Human intestinal microflora USA Public Gi01717 000660_GCAT 411472 18183 Washington Univ Washington Univ Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium sp. A2-232 BACTERIAL Clostridium sp A2-232 ABI, 454 Genome FIRMICUTES incomplete incomplete Non-Pathogen, Anaerobe, Motile, Sporulating, Rod-shaped Medical, HGMI None Host, Human intestinal microflora USA Public Gi01741 000661_GCAT 411488 18209 Washington Univ Washington Univ Bacteria Deferribacteres unclassified unclassified Synergistes Synergistes jonesii BACTERIAL Synergistes jonesii Genome AMINANAEROBIA complete incomplete Non-Pathogen, Anaerobe Medical, HGMI None Host, Human intestinal microflora USA Public Gi01742 000662_GCAT 2754 TIGR Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium sp. L2-50 BACTERIAL Clostridium sp L2-50 ABI, 454 Genome FIRMICUTES Draft incomplete Non-Pathogen, Anaerobe, Sporulating, Rod-shaped Medical, HGMI None Host, Human intestinal microflora USA 41.3 Public Gi01718 000663_GCAT 411489 18211 2936 NZ_AAYW00000000 NCBI, Washington Univ Washington Univ Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium sp. M62/1 BACTERIAL Clostridium sp M62/1 ABI, 454 Genome FIRMICUTES incomplete Non-Pathogen, Anaerobe, Rod-shaped Medical, HGMI None Host, Human intestinal microflora USA Public Gi01719 000664_GCAT 411486 18205 Washington Univ Washington Univ Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium sp. SS2/1 BACTERIAL Clostridium sp SS2/1 ABI, 454 Genome FIRMICUTES incomplete incomplete Non-Pathogen, Anaerobe, Rod-shaped Medical, HGMI None Host, Human intestinal microflora USA Public Gi01720 000665_GCAT 411484 18201 Washington Univ Washington Univ Bacteria Firmicutes Clostridiales Lachnospiraceae Coprococcus Coprococcus eutactus BACTERIAL Coprococcus eutactus ATCC 27759 ABI, 454 ATCC 27759 Genome FIRMICUTES incomplete incomplete Non-Pathogen, Anaerobe, Nonmotile, Nonsporulating, Rod-shaped Medical, HGMI None Host, Human intestinal microflora USA Public Gi01721 000666_GCAT 411474 18187 Washington Univ Washington Univ Bacteria Firmicutes Clostridiales Lachnospiraceae Coprococcus Coprococcus comes BACTERIAL Coprococcus comes ATCC 27758 ABI, 454 ATCC 27758 Genome FIRMICUTES incomplete incomplete Non-Pathogen, Anaerobe, Nonmotile, Nonsporulating, Rod-shaped, Mesophile Medical, HGMI None Host, Human intestinal microflora 37 USA Public Gi02359 003087_GCAT 470146 20525 Washington Univ Bacteria Firmicutes Clostridiales Clostridiaceae Dorea Dorea formicigenerans BACTERIAL Dorea formicigenerans ATCC 27755 ABI, 454 ATCC 27755 Genome FIRMICUTES incomplete incomplete Non-Pathogen, Anaerobe, Nonsporulating, Rod-shaped Medical, HGMI None Host, Human intestinal microflora Human feces USA Public Gi01722 000667_GCAT 411461 18155 Washington Univ Washington Univ Bacteria Firmicutes Clostridiales Clostridiaceae Dorea Dorea longicatena BACTERIAL Dorea longicatena DSM 13814 ABI, 454 10.2x DSM 13814 Genome FIRMICUTES Draft incomplete Non-Pathogen, Anaerobe, Nonsporulating, Rod-shaped Medical, HGMI None Host, Human intestinal microflora 37 Human feces USA 41 Public Gi01723 000668_GCAT 411462 18157 640963046 2913 2970 NZ_AAXB00000000 NCBI, Washington Univ Washington Univ Bacteria Firmicutes Clostridiales Eubacteriaceae Eubacterium Eubacterium hallii BACTERIAL Eubacterium hallii DSM 3353 ABI, 454 ATCC 27751, DSM 3353 Genome FIRMICUTES incomplete incomplete Non-Pathogen, Anaerobe, Rod-shaped Medical, HGMI None Host, Human intestinal microflora Human feces USA Public Gi01724 000669_GCAT 411469 18177 Washington Univ Washington Univ Bacteria Firmicutes Clostridiales Eubacteriaceae Eubacterium Eubacterium plautii BACTERIAL Eubacterium plautii ATCC 29863 ABI, 454 ATCC 29863 Genome FIRMICUTES incomplete incomplete Non-Pathogen, Anaerobe, Rod-shaped Medical, HGMI None Host, Human intestinal microflora USA Public Gi01725 000670_GCAT 411475 18189 Washington Univ Washington Univ Bacteria Firmicutes Clostridiales Eubacteriaceae Eubacterium Eubacterium sp. L2-7 BACTERIAL Eubacterium sp L2-7 ABI, 454 DSM 17630 Genome FIRMICUTES incomplete incomplete Non-Pathogen, Anaerobe, Rod-shaped Medical, HGMI None Host, Human intestinal microflora USA Public Gi01726 000671_GCAT 411487 18207 Washington Univ Washington Univ Bacteria Firmicutes Clostridiales Eubacteriaceae Eubacterium Eubacterium ventriosum BACTERIAL Eubacterium ventriosum ATCC 27560 ABI, 454 ATCC 27560 Genome FIRMICUTES Draft incomplete Non-Pathogen, Anaerobe, Rod-shaped Medical, HGMI None Host, Human intestinal microflora USA 34.9 Public Gi01727 000672_GCAT 411463 18159 640963022 2852 2802 NZ_AAVL00000000 NCBI, Washington Univ Washington Univ Bacteria Firmicutes Clostridiales Clostridiaceae Faecalibacterium Faecalibacterium prausnitzii BACTERIAL Faecalibacterium prausnitzii A2-165 ABI, 454 Genome FIRMICUTES incomplete Non-Pathogen, Anaerobe, Nonmotile, Nonsporulating, Rod-shaped Medical, HGMI None Host, Human intestinal microflora Human feces USA Public Gi01728 000673_GCAT 411483 18199 Washington Univ Washington Univ Bacteria Firmicutes Clostridiales Clostridiaceae Faecalibacterium Faecalibacterium prausnitzii BACTERIAL Faecalibacterium prausnitzii M21/2 ABI, 454 8.4x Genome FIRMICUTES Draft incomplete Non-Pathogen, Anaerobe, Nonmotile, Nonsporulating, Rod-shaped Medical, HGMI None Host, Human intestinal microflora Human feces USA Public Gi01729 000674_GCAT 411485 18203 3094 NZ_ABED00000000 NCBI, Washington Univ Washington Univ Bacteria Firmicutes Clostridiales Peptostreptococcaceae Peptostreptococcus Peptostreptococcus micros BACTERIAL Peptostreptococcus micros ATCC 33270 ABI, 454 ATCC 33270 Genome FIRMICUTES Draft incomplete Pathogen, Anaerobe, Coccus-shaped Medical, Human Pathogen, HGMI Periodontal infection Host, Human intestinal microflora, Human oral microflora, Human mucocutaneous surfaces USA Public Gi01730 000675_GCAT 411465 18169 1702 NZ_ABEE00000000 NCBI, Washington Univ Washington Univ Bacteria Firmicutes Clostridiales Lachnospiraceae Ruminococcus Ruminococcus callidus BACTERIAL Ruminococcus callidus ATCC 27760 ABI, 454 ATCC 27760 Genome FIRMICUTES incomplete Non-Pathogen, Anaerobe, Motile, Coccus-shaped Medical, HGMI None Host, Human intestinal microflora Human feces USA Public Gi01731 000676_GCAT 411473 18185 Washington Univ Washington Univ Bacteria Firmicutes Clostridiales Lachnospiraceae Ruminococcus Ruminococcus gnavus BACTERIAL Ruminococcus gnavus ATCC 29149 ABI, 454 8.7x ATCC 29149 Genome FIRMICUTES Draft incomplete Non-Pathogen, Anaerobe, Coccus-shaped Medical, HGMI None Host, Human intestinal microflora 40 Human feces USA Public Gi02453 000677_GCAT 411470 18179 640963057 3501 3913 NZ_AAYG00000000 NCBI, Washington Univ Washington Univ Bacteria Firmicutes Clostridiales Lachnospiraceae Ruminococcus Ruminococcus obeum BACTERIAL Ruminococcus obeum ATCC 29174 ABI, 454 8.9x ATCC 29174 Genome FIRMICUTES Draft incomplete Non-Pathogen, Anaerobe, Nonmotile, Nonsporulating, Coccus-shaped Medical, HGMI None Host, Human intestinal microflora USA Public Gi01732 000678_GCAT 411459 18147 640963024 3624 4175 NZ_AAVO00000000 NCBI, Washington Univ Washington Univ Bacteria Firmicutes Clostridiales Lachnospiraceae Ruminococcus Ruminococcus torques BACTERIAL Ruminococcus torques ATCC 27756 ABI, 454 13x ATCC 27756 Genome FIRMICUTES Draft incomplete Non-Pathogen, Anaerobe, Nonmotile, Nonsporulating, Coccus-shaped Medical, HGMI None Host, Human intestinal microflora 37 USA Public Gi01733 000679_GCAT 411460 18153 640963025 2739 2875 NZ_AAVP00000000 NCBI, Washington Univ Washington Univ Bacteria Proteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio piger BACTERIAL Desulfovibrio piger ATCC 29098 ABI, 454 ATCC 29098 Genome PROTEOBACTERIA-DELTA incomplete Non-Pathogen, Anaerobe, Rod-shaped, Nonsporulating, Motile Medical, HGMI None Host, Human intestinal microflora USA Public Gi01734 000680_GCAT 411464 18161 Washington Univ Washington Univ Bacteria Spirochaetes Spirochaetales Spirochaetaceae Borrelia Borrelia afzelii BACTERIAL Borrelia afzelii K78 Genome SPIROCHAETES incomplete Pathogen, Spiral-shaped, Motile, Nonsporulating, Aerobe Medical, Human Pathogen Lyme disease, Acrodermatitis chronica atrophicans Host Skin lesion from a Lyme disease patient in Europe in 1993 USA Public Gi01735 000681_GCAT 411555 18143 BOVAC Bacteria Spirochaetes Spirochaetales Spirochaetaceae Borrelia Borrelia duttonii BACTERIAL Borrelia duttonii Ly Genome SPIROCHAETES incomplete Pathogen, Spiral-shaped, Motile, Nonsporulating, Aerobe Medical, Human Pathogen Tick-borne relapsing fever Host 2-year-old girl with tick-borne relapsing fever in Tanzania France Public Gi01736 000682_GCAT 412419 18231 Marseille-Nice Genopole Bacteria Spirochaetes Spirochaetales Spirochaetaceae Borrelia Borrelia recurrentis BACTERIAL Borrelia recurrentis A1 Genome SPIROCHAETES incomplete Pathogen, Spiral-shaped, Motile, Nonsporulating, Aerobe Medical, Human Pathogen Louse-borne relapsing fever Host Adult patient with louse-borne relapsing fever in Ethiopia France Public Gi01737 000683_GCAT 412418 18233 Marseille-Nice Genopole Bacteria Spirochaetes Spirochaetales Spirochaetaceae Borrelia Borrelia turicatae BACTERIAL Borrelia turicatae 91E135 Genome SPIROCHAETES incomplete Pathogen, Spiral-shaped, Motile, Nonsporulating, Aerobe Medical, Human Pathogen Tick-borne relapsing fever Host USA Public Gi01738 000684_GCAT 314724 13597 RML-NIAID Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis holarctica 257 Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Rod-shaped, Aerobe, Nonmotile Medical, Human Pathogen, Animal Pathogen Tularemia Host, Aquatic USA 32.1 Public Gi01739 000685_GCAT 412422 18251 1900 NZ_AAUD00000000 NCBI, Broad Institute Broad Institute Bacteria Verrucomicrobia unclassified Opitutaceae unclassified Opitutaceae bacterium TAV2 BACTERIAL Opitutaceae sp TAV2 Genome VERRUCOMICROBIA Draft incomplete Coccus-shaped, Facultative Biotechnological, Energy production, Biofuels None Host Gut of a wood-feeding termite USA Public Gi01740 000686_GCAT 278957 18333 640963002 5000 4036 NZ_ABEA00000000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria unclassified unclassified unclassified marine actinobacterium PHSC20C1 BACTERIAL Marine actinobacterium sp PHSC20C1 ABI Genome ACTINOBACTERIA Draft incomplete Psychrophile, Aerobe, Rod-shaped, Nonsporulating Environmental, MMI None Marine 20 Surface water off the Western Antarctic Penninsula USA 59 Public Gi00832 000688_GCAT 312284 13373 638341246 2766 2727 NZ_AAOB00000000 NCBI, JCVI J Craig Venter Institute, Desert Research Institute Moore Foundation Murray A http://www.dri.edu/People/alison/ Bacteria Proteobacteria Thiotrichales Thiotrichaceae Thioploca Thioploca araucae BACTERIAL Thioploca araucae Tha-CCL Genome PROTEOBACTERIA-GAMMA incomplete Filament-shaped, Motile Environmental, MMI None Marine Ocean shelf off the coast of Concepcion Chile USA Public Gi01693 000689_GCAT 439499 19383 JCVI J Craig Venter Institute Moore Foundation Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae unclassified marine alpha proteobacterium Y4I BACTERIAL Rhodobacterales sp. Y4I Genome PROTEOBACTERIA-ALPHA incomplete incomplete Environmental, MMI None Coastal, Marine Coastal seawater near St Mary's Georgia USA Public Gi01694 000690_GCAT 164409 19349 JCVI J Craig Venter Institute Moore Foundation Bacteria Proteobacteria Rhizobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens BACTERIAL Agrobacterium radiobacter biovar II K84 Genome PROTEOBACTERIA-ALPHA incomplete Aerobe, Pathogen, Rod-shaped, Motile Medical, Human Pathogen, Plant Pathogen, Agricultural None Host, Root nodule USA Public Gi00020 000691_GCAT 311403 13402 Univ of Washington Univ of Washington NSF Nester EW gnester@u.washington.edu Bacteria Proteobacteria Rhizobiales Rhizobiaceae Agrobacterium Agrobacterium vitis BACTERIAL Agrobacterium vitis biovar III, S4 Genome PROTEOBACTERIA-ALPHA incomplete Aerobe, Pathogen, Rod-shaped, Motile Agricultural, Plant Pathogen Crown gall Host, Root nodule USA Public Gi00021 000692_GCAT 311402 13372 Univ of Washington Univ of Washington NSF Nester EW gnester@u.washington.edu Bacteria Verrucomicrobia Verrucomicrobiales Verrucomicrobiaceae Akkermansia Akkermansia muciniphila BACTERIAL Akkermansia muciniphila ATCC BAA-835 ATCC BAA-835T, CIP 107961 Genome VERRUCOMICROBIA incomplete Anaerobe, Nonmotile, Nonsporulating, Oval-shaped Evolutionary, Medical None Host, Intestinal microflora 37 Human feces USA 47.6 Public Gi00999 000693_GCAT 349741 20089 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas macleodii BACTERIAL Alteromonas macleodii Deep ecotype ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Barophile, Rod-shaped, Motile, Aerobe, Heterotroph Environmental, MMI None Deep sea, Marine Seawater obtained at 3500m depth from the Urania Basin in the Mediterranean Sea USA 44.9 Public Gi00833 000695_GCAT 314275 13374 638341007 4236 4163 NZ_AAOD00000000 NCBI, JCVI J Craig Venter Institute, Univ Miguel Hernandez Moore Foundation Rodrmguez-Valera F http://miracle.umh.es/frvalera/ Bacteria Firmicutes Thermoanaerobacteriales Thermoanaerobacteriaceae Ammonifex Ammonifex degensii BACTERIAL Ammonifex degensii KC4 DSM 10501 Genome FIRMICUTES incomplete Chemolithoautotroph, Hyperthermophile, Rod-shaped, Motile, Anaerobe, Thermophile Educational None Aquatic, Hot spring 70 Neutral volcanic hot spring USA Public Gi00784 000696_GCAT 42838 18961 3000 UCLA Joint Genome Institute, UCLA Bacteria Bacteroidetes unclassified unclassified Candidatus Amoebophilus Candidatus Amoebophilus asiaticus BACTERIAL Amoebophilus asiaticus 5a2 Acanthamoeba sp. Genome BACTEROIDETES incomplete Sulfur oxidizer, Symbiont, Rod-shaped Biotechnological, Ecological, Evolutionary None Host USA Public Gi01564 000697_GCAT 281120 19981 Univ of Vienna Joint Genome Institute, Univ of Vienna DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Syntrophomonadaceae Anaerobranca Anaerobranca gottschalkii BACTERIAL Anaerobranca gottschalkii (bogoriae) AZ 13040/09 Genome FIRMICUTES incomplete Thermophile, Alkalophile, Heterotroph, Anaerobe, Rod-shaped, Motile Biotechnological None Soil Germany Public Gi00025 000698_GCAT 108328 13007 TU Hamburg-Harburg TU Hamburg-Harburg Bacteria Chloroflexi Anaerolinaeles Anaerolinaceae Anaerolinea Anaerolinea thermophila BACTERIAL Anaerolinea thermophila UNI-1 JCM 11387, DSM 14523, NBRC 100420 Genome CHLOROFLEXI incomplete Thermophile, Nonsporulating, Filament-shaped Biotechnological, Wastewater treatment None Aquatic 6-8 50 - 60 Thermophilic granular sludge Japan 54.5 Public Gi01299 000699_GCAT 167964 NITE NITE Fujita N fujita-nobuyuki@nite.go.jp Bacteria Proteobacteria Rickettsiales Anaplasmataceae Anaplasma Anaplasma marginale BACTERIAL Anaplasma marginale Florida Genome PROTEOBACTERIA-ALPHA incomplete Pathogen, Obligate intracellular, Coccus-shaped, Aerobe Medical, Animal Pathogen, Cattle Pathogen, Human Pathogen Bovine anaplasmosis, Anaplasmosis Host USA Public Gi00027 000700_GCAT 320483 13701 Washington State Univ NSF Palmer GH gpalmer@vetmed.wsu.edu Bacteria Actinobacteria Actinomycetales Micrococcaceae Arthrobacter Arthrobacter chlorophenolicus BACTERIAL Arthrobacter chlorophenolicus A6 DSM 12829 Genome ACTINOBACTERIA incomplete Chlorophenol degrading, Aerobe, Rod-shaped, Motile, PAH-degrading, Nonsporulating Environmental, Bioremediation, Biotechnological None Soil 5 - 28 Soil at Fort Collins Colorado USA Public Gi01553 000701_GCAT 85085 20011 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Cyanobacteria Oscillatoriales unclassified Arthrospira Arthrospira maxima BACTERIAL Arthrospira (Spirulina) maxima CS-328 Genome CYANOBACTERIA incomplete Spiral-shaped Food industry, Dietary supplement None Aquatic USA Public Gi01995 002624_GCAT 129910 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mana BACTERIAL Burkholderia UFLA 4-5-1 Amazon Genome PROTEOBACTERIA-BETA incomplete Rod-shaped, Nonsporulating, Motile, Facultative, Rhizosphere-colonizing Host, Rhizosphere USA Public Gi01996 002625_GCAT 32008 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mana BACTERIAL Burkholderia UFLA 4-6-3 Amazon Genome PROTEOBACTERIA-BETA incomplete Rod-shaped, Nonsporulating, Motile, Facultative, Rhizosphere-colonizing Host, Rhizosphere USA Public Gi01997 002626_GCAT 32008 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. SEMIA 6167 BACTERIAL Burkholderia sp SEMIA 6167 Genome PROTEOBACTERIA-BETA incomplete Rod-shaped, Nonsporulating, Motile, Facultative, Rhizosphere-colonizing Host, Rhizosphere USA Public Gi01998 002627_GCAT 312258 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mana BACTERIAL Burkholderia sp 131 Genome PROTEOBACTERIA-BETA incomplete Rod-shaped, Nonsporulating, Motile, Facultative, Rhizosphere-colonizing Host, Rhizosphere USA Public Gi01999 002628_GCAT 32008 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mana BACTERIAL Burkholderia sp 144F Genome PROTEOBACTERIA-BETA incomplete Rod-shaped, Nonsporulating, Motile, Facultative, Rhizosphere-colonizing Host, Rhizosphere USA Public Gi02000 002629_GCAT 32008 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mana BACTERIAL Burkholderia sp H160 Genome PROTEOBACTERIA-BETA incomplete Rod-shaped, Nonsporulating, Motile, Facultative, Rhizosphere-colonizing Host, Rhizosphere USA Public Gi02001 002630_GCAT 32008 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium carboxidivorans BACTERIAL Clostridium carboxidivorans P7 DSM 15243, ATCC BAA-624 Genome FIRMICUTES incomplete Anaerobe, Solvent producer, Motile, Sporulating, Rod-shaped, Acetogenic Biotechnological None Sediment from an agricultural settling lagoon USA Public Gi02002 002631_GCAT 217159 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium thermocellum BACTERIAL Clostridium thermocellum LQR1 DSM 2360 Genome FIRMICUTES incomplete Rod-shaped, Sporulating, Motile, Anaerobe, Thermophile Biotechnological None 10 - 65 USA 39 Public Gi02003 002632_GCAT 1515 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium ultunense BACTERIAL Clostridium ultunense BST Genome FIRMICUTES incomplete Rod-shaped, Sporulating, Motile, Anaerobe, Thermophile, Syntrophic Biotechnological None 7 37 Mesophilic triculture USA 32 Public Gi02004 002633_GCAT 45497 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Pasteurellales Pasteurellaceae Histophilus Histophilus somni BACTERIAL Haemophilus (Histophilus) somnus V Genome PROTEOBACTERIA-GAMMA incomplete Rod-shaped, Sporulating, Motile, Anaerobe, Thermophile, Syntrophic Biotechnological None USA Public Gi02006 002635_GCAT 731 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Bacillales Bacillaceae Geobacillus Geobacillus sp. CICC 10315 BACTERIAL Geobacillus sp. G11MC16 Genome FIRMICUTES incomplete Rod-shaped, Facultative, Motile, Sporulating Biotechnological None USA Public Gi02008 002637_GCAT 129337 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Bacillales Bacillaceae Geobacillus Geobacillus sp. CICC 10315 BACTERIAL Geobacillus sp. WCH70 Genome FIRMICUTES incomplete Rod-shaped, Facultative, Motile, Sporulating, Thermophile Biotechnological None USA Public Gi02009 002638_GCAT 129337 20805 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Bacillales Bacillaceae Geobacillus Geobacillus sp. CICC 10315 BACTERIAL Geobacillus sp. Y412MC10 Genome FIRMICUTES incomplete Rod-shaped, Facultative, Motile, Sporulating Biotechnological None USA Public Gi02010 002639_GCAT 129337 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Micrococcaceae Arthrobacter Arthrobacter sp. Sphe3 BACTERIAL Arthrobacter sp. Sphe3 ABI, 454 Genome ACTINOBACTERIA incomplete Chlorophenol degrading, Aerobe, Rod-shaped, Motile Environmental, Bioremediation, Biotechnological None Soil 30 Creosote contaminated soil in Greece USA Public Gi01675 000702_GCAT 361575 20087 Joint Genome Institute, Univ of Ioannina DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma australiense BACTERIAL Phytoplasma australiense Genome FIRMICUTES complete Aerobe, Pathogen, Obligate parasite Agricultural Australian grapevine yellows Host Australia 27.4 Public Gi01475 000703_GCAT 59748 880 Charles Darwin Univ, Max Planck Institute Tropical Plant Protection Tran-Nguyen L lucy.tran-nguyen@cdu.edu.au Bacteria Firmicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Beet leafhopper transmitted virescence phytoplasma BACTERIAL Phytoplasma beet leafhopper transmitted virescence Genome FIRMICUTES incomplete Pathogen, Aerobe, Sphere-shaped, Obligate parasite Agricultural, Plant Pathogen Beet leafhopper-transmitted virescence Host USA Public Gi00454 000704_GCAT 37694 13618 Ohio State Univ Ohio State Univ, Integrated Genomics Inc USDA Hogenhout SA http://iris.biosci.ohio-state.edu/osuent/personnel/hogenhout.html Bacteria Firmicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Maize bushy stunt phytoplasma BACTERIAL Phytoplasma maize bushy stunt Genome FIRMICUTES incomplete Pathogen, Aerobe, Sphere-shaped, Obligate parasite Agricultural, Plant Pathogen Maize bushy stunt Host USA Public Gi00455 000705_GCAT 202462 13619 Ohio State Univ Ohio State Univ, Integrated Genomics Inc USDA Hogenhout SA http://iris.biosci.ohio-state.edu/osuent/personnel/hogenhout.html Bacteria Actinobacteria Coriobacteriales Coriobacteriaceae Atopobium Atopobium minutum BACTERIAL Atopobium minutum ATCC 33267 Genome ACTINOBACTERIA incomplete Anaerobe, Rod-shaped Biotechnological None Host, Urinary tract, Gingival crevices, Abscesses USA Proprietary Gi00044 000706_GCAT 1381 13208 1965 1689 Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Bacteria Actinobacteria Coriobacteriales Coriobacteriaceae Atopobium Atopobium vaginae BACTERIAL Atopobium vaginae CCUG 38953 ABI 3-5x ATCC BAA-55 Genome ACTINOBACTERIA incomplete Anaerobe, Coccus-shaped, Nonmotile Medical, Lactic acid production None Host, Urogenital tract, Vaginal microflora 37 Vaginal microflora from a healthy woman in Goteborg Sweden 1998 USA 44 Public Gi02271 002988_GCAT 82135 Stanford GTC Stanford Univ Ellison Medical Foundation Hyman R rhyman@stanford.edu Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus dysgalactiae BACTERIAL Streptococcus dysgalactiae dysgalactiae NADC Z-8 ABI ATCC 27957 Genome FIRMICUTES incomplete incomplete Medical, Human Pathogen Mastitis Bovine udder infection USA Public Gi02272 002989_GCAT 99822 454 Life Sciences, Cornell Univ Cornell Univ Stanhope MJ mjs297@cornell.edu Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus dysgalactiae BACTERIAL Streptococcus dysgalactiae equisimilis D166B ABI ATCC 12394 Genome FIRMICUTES incomplete incomplete Pathogen Cattle Pathogen, Animal Pathogen Mastitis Host Bovine udder infection USA Public Gi02273 002990_GCAT 119602 454 Life Sciences, Cornell Univ Cornell Univ Stanhope MJ mjs297@cornell.edu Bacteria Chloroflexi Thermomicrobiales Thermomicrobiaceae Thermomicrobium uncultured Thermomicrobium sp. BACTERIAL Geothermus vaporicella Genome THERMOMICROBIA Draft incomplete Anaerobe, Heterotroph, Thermostable Biotechnological, Food industry, Bioremediation None 5.6-9.1 37-72 Steaming lava crack in Iceland Iceland 52 Proprietary Gi02283 003005_GCAT 189775 3500 1500 Prokaria Prokaria Prokaria http://www.prokaria.com/displayer.asp?cat_id=8 Bacteria Deinococcus-Thermus Thermales Thermaceae Thermus Thermus scotoductus BACTERIAL Thermus scotoductus Genome-Regions THERMI Draft incomplete Thermophile, Iron reducer, Sulfur oxidizer Biotechnological None Hot tap water in Iceland Iceland Proprietary Gi02284 003006_GCAT 37636 Prokaria Prokaria Prokaria http://www.prokaria.com/displayer.asp?cat_id=8 Bacteria Bacteroidetes Sphingobacteriales unclassified Rhodothermus Rhodothermus marinus BACTERIAL Rhodothermus marinus Genome BACTEROIDETES incomplete incomplete Thermophile, Halophile Biotechnological None Aquatic, Hot spring Submarine hot springs in Iceland Iceland Proprietary Gi02285 003007_GCAT 29549 Prokaria Prokaria Prokaria http://www.prokaria.com/displayer.asp?cat_id=8 Bacteria Proteobacteria Rhodospirillales Rhodospirillaceae Azospirillum Azospirillum brasilense BACTERIAL Azospirillum brasilense Genome PROTEOBACTERIA-ALPHA incomplete Organic fertilizer, Nitrogen fixation, Rod-shaped, Motile, Facultative Biotechnological None Soil, Rhizosphere USA Public Gi00731 000707_GCAT 192 13216 Univ of Tennessee NSF Zhulin IB ijouline@utk.edu Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Azotobacter Azotobacter vinelandii BACTERIAL Azotobacter vinelandii AvOP ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Nitrogen fixation, Aerobe, Motile, Stores polyhydroxybutyrate, Carbon sequestration, Lithotroph Biotechnological, Energy production, Environmental None Soil USA 65.7 Public Gi00047 000708_GCAT 322710 16 638341010 4500 4988 NZ_AAAU00000000 NCBI, Joint Genome Institute Joint Genome Institute, Univ of Arizona DOE Kennedy C http://latin.arizona.edu/~kennedy/lab.html Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Azotobacter Azotobacter vinelandii BACTERIAL Azotobacter vinelandii Genome PROTEOBACTERIA-GAMMA incomplete Nitrogen fixation, Aerobe, Motile, Stores polyhydroxybutyrate, Carbon sequestration, Lithotroph Biotechnological, Energy production, Environmental None Soil USA Public Gi01247 000709_GCAT 354 Univ of Washington NSF Wood D derekw@u.washington.edu Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus alcalophilus BACTERIAL Bacillus alcalophilus Genome FIRMICUTES complete Alkalophile, Rod-shaped, Sporulating, Aerobe Biotechnological None USA Proprietary Gi00048 000710_GCAT 1445 13375 Genencor Genencor Genencor Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis (Florida isolate) A2012 ABI Genome FIRMICUTES Draft incomplete Pathogen, Aerobe, Facultative, Sporulating, Motile, Rod-shaped Medical, Biothreat, Human Pathogen Anthrax Soil Patient who suffered severe inhalational anthrax in 2001 from West Palm Beach Florida USA 35 Public Gi00059 000712_GCAT 191218 299 638341011 5093 5544 1 2 NZ_AAAC00000000 NCBI, TIGR TIGR DOE Read TD http://www.tigr.org/~tread/ Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis Kruger B (GT87) Genome FIRMICUTES Draft incomplete Pathogen, Aerobe, Sporulating, Motile, Rod-shaped Medical, Biothreat, Human Pathogen Anthrax Soil Kruger National Park in South Africa USA 35 Public Gi00054 000713_GCAT 205919 324 5500 NZ_AAEQ00000000 NCBI TIGR NIH-NIAID Read TD http://www.tigr.org/~tread/ Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis WesternNA USA6153 (A0071, GT3 Group A1a) Genome FIRMICUTES Draft incomplete Pathogen, Aerobe, Sporulating, Motile, Rod-shaped Medical, Biothreat, Human Pathogen Anthrax Soil USA 35 Public Gi00057 000714_GCAT 212045 337 5511 NZ_AAER00000000 NCBI TIGR NIH-NIAID Read TD http://www.tigr.org/~tread/ Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis A1055 (Group C) Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Sporulating, Motile, Rod-shaped Medical, Biothreat, Human Pathogen Anthrax Soil USA 35.3 Public Gi00050 000715_GCAT 280355 10795 5300 NZ_AAEO00000000 NCBI TIGR NIH-NIAID Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis Australia 94 (GT55, Group A3a) Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Sporulating, Motile, Rod-shaped Medical, Biothreat, Human Pathogen Anthrax Soil USA 35.2 Public Gi00052 000717_GCAT 280477 10799 5500 NZ_AAES00000000 NCBI TIGR NIH-NIAID Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis CNEVA-9066 (GT79 Group B2) Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Sporulating, Motile, Rod-shaped Medical, Biothreat, Human Pathogen Anthrax Soil France USA 35.2 Public Gi00053 000718_GCAT 280354 10796 5500 NZ_AAEN00000000 NCBI TIGR NIH-NIAID Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis Vollum (GT77 Group A4) Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Sporulating, Motile, Rod-shaped Medical, Biothreat, Human Pathogen Anthrax Soil USA 35.2 Public Gi00056 000719_GCAT 261591 10797 5500 NZ_AAEP00000000 NCBI TIGR NIH-NIAID Bacteria Firmicutes Bacillales Paenibacillaceae Brevibacillus Brevibacillus brevis BACTERIAL Brevibacillus brevis 47 Genome FIRMICUTES incomplete Motile, Rod-shaped, Aerobe, Sporulating, Tyrosidine producer, Gramicidin producer Biotechnological, Antibiotic production None Soil Japan Public Gi00095 000720_GCAT 1393 12509 NITE NITE, Tokyo Univ of Agriculture and Technology Fujita N fujita-nobuyuki@nite.go.jp Bacteria Firmicutes Bacillales Paenibacillaceae Brevibacillus Brevibacillus sp. PNG 276 BACTERIAL Brevibacillus sp PNG 276 Genome FIRMICUTES incomplete Motile, Rod-shaped, Aerobe, Sporulating Biotechnological, Antibiotic production None Soil Tissues of an unidentified tube worm Canada Public Gi01398 000721_GCAT 365043 16295 Univ of British Columbia Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus G9241 ABI Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Sporulating, Rod-shaped Medical, Biothreat, Human Pathogen Anthrax, Food poisoning Soil 25 - 35 USA 35.2 Public Gi00034 000722_GCAT 269801 10788 638341012 5930 6147 NZ_AAEK00000000 NCBI TIGR NIH-NIAID Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus AH187 (F4810/72) Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Sporulating, Rod-shaped Medical, Biothreat, Human Pathogen Food poisoning Soil Vomit of a person having eaten cooked rice in London UK USA 35.5 Public Gi01256 000723_GCAT 405534 17715 5500 NZ_AAUF00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus AH820 Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Sporulating, Rod-shaped Medical, Biothreat, Human Pathogen Food poisoning Soil October 1995 in Akershus Norway, from the periodontal pocket of a 76 year old female patient with marginal periodontitis USA 35.4 Public Gi01257 000724_GCAT 405535 17711 5600 NZ_AAUE00000000 TIGR TIGR NIH-NIAID Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus W Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Sporulating, Rod-shaped Medical, Biothreat, Human Pathogen Food poisoning Soil USA 35.6 Public Gi01258 000725_GCAT 405917 17717 5300 NZ_ABCZ00000000 TIGR TIGR NIH-NIAID Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis Tsiankovskii-I Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Sporulating, Rod-shaped Medical, Biothreat, Human Pathogen Anthrax Soil USA Public Gi01379 000726_GCAT 405536 17709 5500 NZ_ABDN00000000 TIGR TIGR NIH-NIAID Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus Q1 Genome FIRMICUTES incomplete Non-Pathogen, Facultative, Motile, Sporulating, Rod-shaped Medical None Soil China Public Gi01380 000727_GCAT 361100 16220 Microbial Genome Center of ChMPH Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus NVH0597-99 ABI Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Sporulating, Rod-shaped Medical, Biothreat, Human Pathogen Food poisoning Soil Spice mix in 1999 USA Public Gi01381 000728_GCAT 451707 19955 5400 NZ_ABDK00000000 TIGR TIGR NIH-NIAID Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus H3081.97 MLST type 144 ABI Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Sporulating, Rod-shaped Medical, Biothreat, Human Pathogen Food poisoning Soil Emetic strain USA Public Gi01382 000729_GCAT 451708 19957 5600 NZ_ABDL00000000 TIGR TIGR NIH-NIAID Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus AH1134 Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Sporulating, Rod-shaped Medical, Biothreat, Human Pathogen Food poisoning, Endophthalmitis Soil Pediatric endophthalmitis case at Dean McGee Eye Institute in Oklahoma City USA Public Gi01383 000730_GCAT 405533 17719 5700 NZ_ABDA00000000 TIGR TIGR NIH-NIAID Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus G9842 Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Sporulating, Rod-shaped Medical, Biothreat, Human Pathogen Food poisoning Soil Stool samples from an outbreak that involved three individuals in Nebraska in 1996 USA Public Gi01384 000731_GCAT 405531 17733 5700 NZ_ABDJ00000000 TIGR TIGR NIH-NIAID Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus B4264 (2002734361) Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Sporulating, Rod-shaped Medical, Biothreat, Human Pathogen Pneumonia Soil 1969 from a case of fatal pneumonia in a male patient USA Public Gi01385 000732_GCAT 405532 17731 5300 NZ_ABDI00000000 TIGR TIGR NIH-NIAID Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus 03BB108 ABI Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Sporulating, Rod-shaped Medical, Biothreat, Human Pathogen Pneumonia Soil Same dust as the pneumonia-causing strain B. cereus USA Public Gi01386 000733_GCAT 451709 19959 5900 NZ_ABDM00000000 TIGR TIGR NIH-NIAID Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus weihenstephanensis BACTERIAL Bacillus weihenstephanensis (cereus) KBAB4 ABI 11x Genome FIRMICUTES Draft incomplete Non-Pathogen, Facultative, Motile, Sporulating, Psychrotolerant, Rod-shaped Medical None Soil International 35.4 Public Gi00791 000734_GCAT 315730 13623 638341016 5602 5532 NZ_AAOY00000000 NCBI, Joint Genome Institute Joint Genome Institute, INRA DOE Sorokin A sorokine@jouy.inra.fr Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus F0837/76 Genome FIRMICUTES incomplete Pathogen, Facultative, Motile, Sporulating, Rod-shaped Medical, Human Pathogen Food poisoning Soil France Public Gi01000 000736_GCAT 1396 15716 Genoscope Genoscope, INRA Sorokin A sorokine@jouy.inra.fr Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus clausii BACTERIAL Bacillus clausii. Genome FIRMICUTES incomplete Alkalitolerant, Probiotic, Protease production Biotechnological None International 44.8 Proprietary Gi00061 000737_GCAT 79880 4300 AGOWA, QIAGEN Genencor Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus coagulans BACTERIAL Bacillus coagulans 36D1 ABI 9.5x Genome FIRMICUTES Draft incomplete Acidophile, Thermophile, Rod-shaped, Sporulating, Motile, Facultative Medical, Biotechnological, Food industry, Bioenergy, Biofuels None Host, Intestinal microflora 55 USA 46 Public Gi01001 000738_GCAT 345219 15679 640196208 2941 2675 NZ_AAWV00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus megaterium BACTERIAL Bacillus megaterium MS941 Genome FIRMICUTES incomplete Facultative, Sporulating, Motile, Rod-shaped Biotechnological, Vitamin production, Agricultural None Soil Germany 46 Public Gi01156 000739_GCAT 1404 Technical Univ Braunschweig, GATC Biotech Sun J jsu@gbf.de Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus megaterium BACTERIAL Bacillus megaterium QM B1551 Genome FIRMICUTES incomplete Facultative, Sporulating, Motile, Rod-shaped Biotechnological, Vitamin production, Agricultural None Soil USA Public Gi01242 000740_GCAT 1404 TIGR NSF Ravel J http://www.tigr.org/faculty/Ravel_Jacques/index.shtml Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus pumilus BACTERIAL Bacillus pumilus F036B 15.5x Genome FIRMICUTES incomplete Sporulating, Radiation resistant, Pathogen, Rod-shaped, Motile, Aerobe Medical None Soil USA Public Gi01901 002534_GCAT 1408 13482 BCM-HGSC BCM-HGSC NSF Weinstock G gwstock@bcm.tmc.edu Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis 31-101 9.4x Genome FIRMICUTES incomplete Sporulating, Radiation resistant, Pathogen, Rod-shaped, Motile, Aerobe Medical None Soil USA Public Gi01834 000742_GCAT 1392 5000 BCM-HGSC BCM-HGSC NSF Weinstock G gwstock@bcm.tmc.edu Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis 500 7.6x Genome FIRMICUTES incomplete Sporulating, Radiation resistant, Pathogen, Rod-shaped, Motile, Aerobe Medical None Soil USA Public Gi01835 000743_GCAT 1392 5000 BCM-HGSC BCM-HGSC NSF Weinstock G gwstock@bcm.tmc.edu Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. BACTERIAL Burkholderia sp SRMrh-20 Genome PROTEOBACTERIA-BETA incomplete Nitrogen fixation Agricultural None Host Mexico USA Public Gi01836 000744_GCAT 36773 7000 BCM-HGSC BCM-HGSC NSF Weinstock G gwstock@bcm.tmc.edu Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia tuberum BACTERIAL Burkholderia tuberum STM-678T Genome PROTEOBACTERIA-BETA incomplete Nitrogen fixation Agricultural None Host South Africa USA Public Gi01837 000745_GCAT 157910 7000 BCM-HGSC BCM-HGSC NSF Weinstock G gwstock@bcm.tmc.edu Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. BACTERIAL Burkholderia sp PVA5 13x Genome PROTEOBACTERIA-BETA incomplete Nitrogen fixation Agricultural None Host USA Public Gi01838 000746_GCAT 36773 7000 BCM-HGSC BCM-HGSC NSF Weinstock G gwstock@bcm.tmc.edu Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia unamae BACTERIAL Burkholderia unamae MtI-641T ATCC BAA-744T, CIP 107921 Genome PROTEOBACTERIA-BETA incomplete Nitrogen fixation Agricultural None Host, Rhizosphere 4.5-7.1 Brazil USA Public Gi01839 000747_GCAT 219649 7000 BCM-HGSC BCM-HGSC NSF Weinstock G gwstock@bcm.tmc.edu Bacteria Proteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia muris BACTERIAL Ehrlichia muris Genome PROTEOBACTERIA-ALPHA incomplete Pathogen Medical, Mouse Pathogen, Animal Pathogen Unknown USA Public Gi01840 000748_GCAT 35795 BCM-HGSC BCM-HGSC NSF Weinstock G gwstock@bcm.tmc.edu Bacteria Firmicutes Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis HH22 16.9x Genome FIRMICUTES incomplete Pathogen, Facultative, Nonmotile, Chemoorganotroph Medical, Human Pathogen Urinary infection, Bacteremia, Endocarditis Host, Intestinal microflora, Wastewater USA Public Gi01841 000749_GCAT 1351 2500 BCM-HGSC BCM-HGSC NIH-NIAID Weinstock G gwstock@bcm.tmc.edu Bacteria Firmicutes Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis OG1RF ABI, 454 22.2x ATCC 47077 Genome FIRMICUTES incomplete Pathogen, Facultative, Nonmotile, Chemoorganotroph, Mesophile Medical, Human Pathogen Urinary infection, Bacteremia, Endocarditis Host, Intestinal microflora, Wastewater USA Public Gi01842 000750_GCAT 1351 20843 2500 BCM-HGSC BCM-HGSC NIH-NIAID Weinstock G gwstock@bcm.tmc.edu Bacteria Firmicutes Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis TX0104 21.3x Genome FIRMICUTES incomplete Pathogen, Facultative, Nonmotile, Chemoorganotroph Medical, Human Pathogen Urinary infection, Bacteremia, Endocarditis Host, Intestinal microflora, Wastewater USA Public Gi01843 000751_GCAT 1351 2500 BCM-HGSC BCM-HGSC NIH-NIAID Weinstock G gwstock@bcm.tmc.edu Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus pumilus BACTERIAL Bacillus pumilus SAFR-032 Genome FIRMICUTES incomplete Sporulating, Radiation resistant, Pathogen, Rod-shaped, Motile, Aerobe Medical None Soil USA Public Gi00674 000752_GCAT 315750 13626 640753007 Jet Propulsion Laboratory Venkateswaran K kjvenkat@jpl.nasa.gov Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus selenitireducens BACTERIAL Bacillus selenitireducens MLS-10 ATCC 700615 Genome FIRMICUTES incomplete Halophile, Alkalophile, Nonsporulating, Rod-shaped, Respiratory arsenate reductase, Arsenic metabolizer, Nonmotile, Facultative Biotechnological None Aquatic Anoxic muds of Mono Lake California USA Public Gi00921 000753_GCAT 439292 13376 3000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Bacillales Bacillaceae Geobacillus Geobacillus stearothermophilus BACTERIAL Bacillus (Geobacillus) stearothermophilus 10 Genome FIRMICUTES incomplete Facultative, Sporulating, Motile, Thermophile, Rod-shaped, Thermophile Biotechnological None Aquatic, Hot spring Hot spring in Yellowstone National Park USA Public Gi00063 000754_GCAT 272567 75 4250 NCBI, Univ of Oklahoma Univ of Oklahoma NSF Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus sp. NRRL B-14911 BACTERIAL Bacillus sp NRRL B-14911 ABI Genome FIRMICUTES Draft incomplete Rod-shaped, Sporulating Environmental, MMI None Marine 10 meters depth in the Gulf of Mexico USA 45.7 Public Gi00834 000755_GCAT 313627 13545 638341014 5072 5691 NZ_AAOX00000000 NCBI, JCVI J Craig Venter Institute, Rice Univ Moore Foundation Siefert J http://www.stat.rice.edu/~siefert/ Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus mojavensis BACTERIAL Bacillus mojavensis RO-H-1 NRRL B-14698 Genome FIRMICUTES incomplete Endophyte Agricultural, Biocontrol None Soil USA Public Gi01243 000756_GCAT 72360 TIGR NSF Ravel J http://www.tigr.org/faculty/Ravel_Jacques/index.shtml Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus subtilis BACTERIAL Bacillus subtilis RO-NN-1 (168 group) Genome FIRMICUTES incomplete Facultative, Sporulating, Motile, Rod-shaped Biotechnological None Soil Environmental isolate USA Public Gi01244 000757_GCAT 1423 TIGR NSF Ravel J http://www.tigr.org/faculty/Ravel_Jacques/index.shtml Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus subtilis BACTERIAL Bacillus subtilis NCIB3610 NCIB3610 Genome FIRMICUTES incomplete Facultative, Sporulating, Motile, Rod-shaped Biotechnological None Soil USA Public Gi01245 000758_GCAT 1423 TIGR NSF Ravel J http://www.tigr.org/faculty/Ravel_Jacques/index.shtml Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus subtilis BACTERIAL Bacillus subtilis TU-B-10 (W23 group) Genome FIRMICUTES incomplete Facultative, Sporulating, Motile, Rod-shaped Biotechnological None Soil USA Public Gi01246 000759_GCAT 1423 TIGR NSF Ravel J http://www.tigr.org/faculty/Ravel_Jacques/index.shtml Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus thuringiensis BACTERIAL Bacillus thuringiensis ATCC 35646 israelensis ABI ATCC 35646 Genome FIRMICUTES Draft complete Pathogen, Facultative, Sporulating, Motile, Rod-shaped Insect Pathogen, Biotechnological, Agricultural Sotto disease Host, Soil USA 35 Public Gi00065 000760_GCAT 339854 15522 638341015 5880 6132 NZ_AAJM00000000 NCBI Integrated Genomics Inc DARPA Kapatral V Vinayak@integratedgenomics.com Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus thuringiensis BACTERIAL Bacillus thuringiensis NBT97 Genome FIRMICUTES incomplete Pathogen, Facultative, Sporulating, Motile Insect Pathogen, Biotechnological, Agricultural Soil, Host USA Public Gi00064 000761_GCAT 1428 Joint Genome Institute DOE Gilna P pgil@lanl.gov Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus thuringiensis BACTERIAL Bacillus thuringiensis kurstaki kurstaki Genome FIRMICUTES incomplete Pathogen, Facultative, Sporulating, Motile Insect Pathogen, Biotechnological, Agricultural Soil, Plant surface USA Public Gi00759 000762_GCAT 29339 Microgen Univ of Texas, Dallas, Univ of Oklahoma NSF Bulla L bulla@utdallas.edu Bacteria Proteobacteria Bdellovibrionales Bacteriovoracaceae Bacteriovorax Bacteriovorax marinus BACTERIAL Bacteriovorax marinus SJ Genome PROTEOBACTERIA-DELTA complete Parasite, Motile Biotechnological None Aquatic, Host Water sample from Saint John's Island in the Caribbean International 36.75 Public Gi00066 000763_GCAT 97084 12622 2600 Sanger Institute Sanger Institute, Univ of Maryland, Morgan State Univ Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Bacteroidetes Bacteroidales Porphyromonadaceae Tannerella Tannerella forsythensis BACTERIAL Tannerella (Bacteroides) forsythensis ATCC 43037 ATCC 43037 Genome BACTEROIDETES incomplete incomplete Anaerobe, Pathogen, Rod-shaped, Nonmotile Medical, Human Pathogen, Dental Pathogen Periodontal infection Host, Oral microflora 37 USA Public Gi00646 000764_GCAT 203275 319 TIGR Bacteria Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron BACTERIAL Bacteroides thetaiotaomicron 7330 Genome BACTEROIDETES incomplete Obligate anaerobe, Pathogen Medical Peritonitis Host, Intestinal microflora USA Public Gi01387 000766_GCAT 818 Washington Univ Washington Univ NSF Gordon JI jgordon@molecool.wustl.edu Bacteria Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron BACTERIAL Bacteroides thetaiotaomicron 3731 Genome BACTEROIDETES incomplete Obligate anaerobe, Pathogen Medical Peritonitis Host, Intestinal microflora USA Public Gi01388 000767_GCAT 818 Washington Univ Washington Univ NSF Gordon JI jgordon@molecool.wustl.edu Bacteria Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. WH2 BACTERIAL Bacteroides sp. WH2 Genome BACTEROIDETES incomplete Obligate anaerobe, Pathogen Medical Peritonitis Host, Intestinal microflora USA Public Gi01389 000768_GCAT 311784 Washington Univ Washington Univ NSF Gordon JI jgordon@molecool.wustl.edu Bacteria Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis BACTERIAL Bacteroides fragilis 638R Genome BACTEROIDETES complete Obligate anaerobe, Pathogen, Chemoorganotroph, Rod-shaped Medical, Human Pathogen, Animal Pathogen Diarrhea, Abcesses Host, Intestinal microflora United Kingdom 44 Public Gi00069 000769_GCAT 817 5200 NCBI, Sanger Institute Sanger Institute Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis BACTERIAL Bacteroides fragilis Genome BACTEROIDETES complete Obligate anaerobe, Pathogen, Chemoorganotroph Medical, Human Pathogen, Animal Pathogen Diarrhea, Abcesses Intestinal microflora, Host USA 44 Proprietary Gi00068 000770_GCAT 817 PathoGenome-TM Genome Therapeutics Bacteria Proteobacteria Rhizobiales Bartonellaceae Bartonella Bartonella bacilliformis BACTERIAL Bartonella bacilliformis Genome PROTEOBACTERIA-ALPHA incomplete Pathogen, Rod-shaped, Motile, Aerobe, Intracellular, Parasite Medical, Human Pathogen Carrion's disease, Oroya fever Host, Blood International Public Gi00073 000772_GCAT 774 13486 Univ of Uppsala, Univ of Montana Andersson S http://web1.ebc.uu.se/molev/staff/siv.html Bacteria Proteobacteria Rhizobiales Bartonellaceae Bartonella Bartonella tribocorum BACTERIAL Bartonella tribocorum Genome PROTEOBACTERIA-ALPHA complete Pathogen, Rod-shaped, Motile, Aerobe Medical, Rat Pathogen Bartonellosis Host Blood of two wild rats International Public Gi01157 000773_GCAT 85701 16098 2619 2144 Max Planck Institute Schuster SC http://www.eb.tuebingen.mpg.de/schuster/staff_schuster.htm Bacteria Actinobacteria Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium breve BACTERIAL Bifidobacterium breve UCC2003 (NCIMB8807) Genome ACTINOBACTERIA complete Probiotic, Anaerobe, Rod-shaped, Nonsporulating, Nonmotile, Non-Pathogen Biotechnological, Food industry None Host, Intestinal microflora Infant nursing stool Ireland 60 Public Gi00078 000774_GCAT 326426 13487 Univ College Dublin Univ College Cork Higgins DG http://bioinf.ucd.ie/people/higgins.html Bacteria Actinobacteria Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium animalis BACTERIAL Bifidobacterium animalis lactis Bb-12 Genome ACTINOBACTERIA complete Probiotic, Anaerobe, Rod-shaped, Nonsporulating, Nonmotile, Non-Pathogen Biotechnological, Food industry None Host, Intestinal microflora Denmark Proprietary Gi01876 000775_GCAT 302911 Chr. Hansen, Integrated Genomics Inc Pedersen MB MartinB.Pedersen@dk.chr-hansen.com Bacteria Actinobacteria Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum BACTERIAL Bifidobacterium longum DJO10A ABI Genome ACTINOBACTERIA Draft incomplete Probiotic, Anaerobe, Rod-shaped, Nonsporulating, Nonmotile, Non-Pathogen Biotechnological, Food industry None Host, Intestinal microflora 37 - 41 USA 59.1 Public Gi00079 000776_GCAT 205913 321 638341019 2375 1908 NZ_AABM00000000 NCBI, Joint Genome Institute Joint Genome Institute, Univ of Minnesota DOE O'Sullivan D http://www.fsci.umn.edu/Dan_OSullivan/djo.html Bacteria Actinobacteria Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum BACTERIAL Bifidobacterium longum infantis ATCC 15697 Infantis ATCC 15697 Genome ACTINOBACTERIA incomplete Probiotic, Anaerobe, Rod-shaped, Nonsporulating, Nonmotile, Non-Pathogen Biotechnological, Food industry None Host, Intestinal microflora USA Public Gi01539 000777_GCAT 391904 17189 639255503 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium dentium BACTERIAL Bifidobacterium dentium Bd1 Genome ACTINOBACTERIA incomplete Probiotic, Anaerobe, Rod-shaped, Nonsporulating, Nonmotile, Non-Pathogen Biotechnological, Food industry None Host Italy Public Gi01668 000778_GCAT 401473 17583 Univ of Parma Ventura, M marco.ventura@unipr.it Bacteria Actinobacteria Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium dentium BACTERIAL Bifidobacterium dentium ATCC 27678 ATCC 27678 Genome ACTINOBACTERIA incomplete incomplete Probiotic, Anaerobe, Rod-shaped, Nonsporulating, Nonmotile, Non-Pathogen Medical, HGMI None Host, Human intestinal microflora Human feces USA Public Gi02447 003181_GCAT 1689 17583 Univ of Washington Bacteria Proteobacteria Bdellovibrionales Bdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus BACTERIAL Bdellovibrio bacteriovorus W Genome PROTEOBACTERIA-DELTA incomplete Predatory, Motile, Aerobe, Curved-shaped, Nonsporulating Biotechnological, Medical, Pathogen in Bacteria None Host, Intestinal microflora USA Public Gi00077 000779_GCAT 959 2100 Microgen Univ of Oklahoma NSF Iandolo JJ john-iandolo@ouhsc.edu Bacteria Planctomycetes Planctomycetales Planctomycetaceae Blastopirellula Blastopirellula marina BACTERIAL Blastopirellula marina SH 106T, DSM 3645 ABI DSM 3645T, ATCC 49069T Genome PLANCTOMYCETES Draft incomplete Environmental, MMI None Surface water, Marine Surface waters of Kiel Fjord in the Baltic Sea USA 57 Public Gi00835 000780_GCAT 314230 13488 638341020 6655 6025 NZ_AANZ00000000 NCBI, JCVI J Craig Venter Institute, Max Planck Institute Moore Foundation Gloeckner FO http://www.mpi-bremen.de/en/Microbial_Genomics_Group.html Bacteria Bacteroidetes Flavobacteriales Blattabacteriaceae Blattabacterium Blattabacterium sp. BACTERIAL Blattabacterium sp. Blattella germanica Genome BACTEROIDETES incomplete Insect endosymbiont Biotechnological, Pest control None Host Spain Public Gi01158 000781_GCAT 34099 650 Univ of Valencia Neef A alexander.neef@uv.es Bacteria Proteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella petrii BACTERIAL Bordetella petrii Se-1111R, DSM 12804 DSM 12804T, CCUG 43448T Genome PROTEOBACTERIA-BETA incomplete Pathogen, Anaerobe, Selenate reducer, Nonmotile, Selenate reducer, Heterotroph Medical None Aquatic Anaerobic dechlorinating bioreactor culture enriched from river sediment Germany 63.8 Public Gi00083 000782_GCAT 340100 13489 5200 Univ of Wuerzburg Univ of Wuerzburg GBF Gross R roy@biozentrum.uni-wuerzburg.de Bacteria Spirochaetes Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi JD1 Genome SPIROCHAETES incomplete Pathogen, Motile, Spiral-shaped Medical, Human Pathogen Tick-borne relapsing fever Host USA Public Gi00786 000783_GCAT 139 City Univ of NY, Stony Brook Univ, TIGR NIH Qiu W-G weigang@genectr.hunter.cuny.edu Bacteria Spirochaetes Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi N40 Genome SPIROCHAETES incomplete Pathogen, Motile, Spiral-shaped Medical, Human Pathogen Tick-borne relapsing fever Host USA Public Gi00787 000784_GCAT 139 City Univ of NY, Stony Brook Univ, TIGR NIH Qiu W-G weigang@genectr.hunter.cuny.edu Bacteria Spirochaetes Spirochaetales Spirochaetaceae Borrelia Borrelia hermsii BACTERIAL Borrelia hermsii Genome SPIROCHAETES incomplete Pathogen, Motile, Spiral-shaped, Aerobe, Microaerophilic Medical, Human Pathogen Tick-borne relapsing fever Host USA Public Gi00085 000785_GCAT 140 Univ of Minnesota Univ of Minnesota NIH-NIAID Kapur V http://www.cvm.umn.edu/departments/vpb/faculty/kapur.htm Bacteria Proteobacteria Rhizobiales Bradyrhizobiaceae Bradyrhizobium Bradyrhizobium japonicum BACTERIAL Bradyrhizobium japonicum USDA 110 Soybeans Genome PROTEOBACTERIA-ALPHA incomplete Nitrogen fixation, Aerobe, Motile, Stores polyhydroxybutyrate, Rod-shaped, Photosynthetic Agricultural None Soil Soybean nodule in 1957 in Florida USA USA Proprietary Gi00090 000786_GCAT 224911 10231 14192 Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Bacteria Proteobacteria Rhizobiales Bradyrhizobiaceae Bradyrhizobium Bradyrhizobium japonicum BACTERIAL Bradyrhizobium japonicum Genome PROTEOBACTERIA-ALPHA incomplete Nitrogen fixation, Aerobe, Motile, Stores polyhydroxybutyrate, Rod-shaped, Photosynthetic Agricultural None Host USA Public Gi00089 000787_GCAT 375 CUGI Clemson Univ Clemson Univ CUGI jtmkns@clemson.edu Bacteria Actinobacteria Actinomycetales Brevibacteriaceae Brevibacterium Brevibacterium linens BACTERIAL Brevibacterium linens BL2 ABI ATCC 9174 Genome ACTINOBACTERIA Draft incomplete Aerobe, Nonsporulating, Nonmotile, Rod-shaped, Halotolerant Biotechnological, Vitamin production, Insecticides degrader, Wastewater treatment None Soil, Food, Human skin 5.5-9.5 20 - 30 USA 62.8 Public Gi00096 000790_GCAT 321955 405 638341022 4366 3777 NZ_AAGP00000000 Joint Genome Institute Joint Genome Institute, Utah State Univ DOE Weimer B milkbugs@cc.usu.edu Bacteria Proteobacteria Rhizobiales Brucellaceae Brucella Brucella melitensis BACTERIAL Brucella melitensis 16M. Genome PROTEOBACTERIA-ALPHA incomplete Pathogen, Aerobe, Nonmotile, Facultative intracellular, Nonsporulating Medical, Biothreat, Human Pathogen, Animal Pathogen Brucellosis Host Infected goat France Public Gi00100 000791_GCAT 224914 FUNDP Univ Notre-Dame De La Paix de Bolle X http://www.fundp.ac.be/recherche/personnes/fr/01003147.html Bacteria Proteobacteria Rhizobiales Brucellaceae Brucella Brucella canis BACTERIAL Brucella canis ATCC23365 ATCC23365 Genome PROTEOBACTERIA-ALPHA incomplete incomplete Pathogen, Aerobe, Nonmotile, Facultative intracellular, Nonsporulating Medical, Biothreat, Animal Pathogen Canine brucellosis Host USA Public Gi02286 003008_GCAT 36855 20243 Virginia Bioinformatics Institute Bacteria Proteobacteria Rhizobiales Brucellaceae Brucella Brucella abortus BACTERIAL Brucella abortus S19 Genome PROTEOBACTERIA-ALPHA incomplete Pathogen, Aerobe, Nonmotile, Rod-shaped, Nonsporulating, Intracellular pathogen Medical, Biothreat, Human Pathogen, Mammal Pathogen Spontaneous abortion Host 37 Attenuated mutant of strain 9-941 USA Public Gi01919 002543_GCAT 430066 18999 Virginia Bioinformatics Institute Bacteria Proteobacteria Rhizobiales Brucellaceae Brucella Brucella suis BACTERIAL Brucella suis ATCC 23445 ATCC 23445 Genome PROTEOBACTERIA-ALPHA incomplete incomplete Pathogen, Aerobe, Nonmotile, Rod-shaped, Nonsporulating, Intracellular pathogen, Mesophile Medical, Biothreat, Human Pathogen, Mammal Pathogen Brucellosis, Infectious abortions, Fever Host 37 USA Public Gi02357 003085_GCAT 470137 20371 Virginia Bioinformatics Institute Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cenocepacia BACTERIAL Burkholderia cenocepacia J2315 Genome PROTEOBACTERIA-BETA complete incomplete Pathogen, Motile, Facultative, Rod-shaped Medical, Human Pathogen Necrotizing Pneumonia, Chronic infection Host United Kingdom 67 Public Gi00104 000793_GCAT 216591 339 7600 Sanger Institute Sanger Institute Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cenocepacia BACTERIAL Burkholderia cenocepacia PC184 ABI 9.7x Genome PROTEOBACTERIA-BETA Draft incomplete Pathogen, Motile, Facultative, Rod-shaped Medical, Plant Pathogen, Human Pathogen, Agricultural Pneumonia Host Patient with cystic fibrosis USA 66 Public Gi01177 000795_GCAT 350702 16169 638341024 6927 5971 NZ_AAKX00000000 NCBI, Broad Institute Broad Institute NIH-NIAID MCS msc@broad.mit.edu Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia dolosa BACTERIAL Burkholderia dolosa AUO158 ABI 9x Genome PROTEOBACTERIA-BETA Draft incomplete Rod-shaped, Nonsporulating, Motile, Facultative Medical, Human Pathogen Necrotizing Pneumonia, Chronic infection Host Epidemic strain from Boston Children's Hospital. Isolated from the same patient as strain BCH12 USA 67 Public Gi01125 000796_GCAT 350701 16168 638341025 6247 5441 NZ_AAKY00000000 NCBI, Broad Institute Broad Institute NIH-NIAID MCS msc@broad.mit.edu Bacteria Firmicutes Lactobacillales Enterococcaceae Enterococcus Enterococcus sp. BACTERIAL Enterococcus spp Genome FIRMICUTES incomplete Pathogen, Facultative, Nonmotile, Chemoorganotroph, Halotolerant Medical, Human Pathogen Urinary infection, Bacteremia, Endocarditis Host, Intestinal microflora, Wastewater USA Public Gi01902 002535_GCAT 35783 Broad Institute NIH-NIAID MCS msc@broad.mit.edu Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia glumae BACTERIAL Burkholderia glumae DSM 9512 ATCC 33617, DSM 7169, NCPPB 2981, PDDCC 3655 Genome PROTEOBACTERIA-BETA incomplete Pathogen, Rod-shaped, Nonsporulating Agricultural, Plant Pathogen, Biotechnological Seedling rot, Panicle blight Host Germany Public Gi01068 000798_GCAT 337 7680 Goettingen Genomics Laboratory Competence Network, Goettingen Genomics Laboratory Jaeger KE k.-e.jaeger@fz-juelich.de Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia glumae BACTERIAL Burkholderia glumae Genome PROTEOBACTERIA-BETA incomplete Pathogen, Rod-shaped, Nonsporulating Agricultural, Plant Pathogen Seedling rot, Panicle blight Host Korea 65 Public Gi00108 000799_GCAT 337 13405 7220 Seoul National Univ, Crop Functional Genomics Center Kim M mkkim3@plaza.snu.ac.kr Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia thailandensis BACTERIAL Burkholderia thailandensis E264, ATCC 700388 ABI 7x ATCC 700388 Genome PROTEOBACTERIA-BETA Draft complete Non-Pathogen, Rod-shaped, Nonsporulating, Motile, Aerobe Agricultural None Soil Rice field sample in Thailand Singapore 67 Public Gi01950 002576_GCAT 271848 19251 6304 5645 NZ_AACX00000000 NCBI Genome Institute of Singapore, TIGR, Broad Institute Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei BACTERIAL Burkholderia mallei JHU ABI Genome PROTEOBACTERIA-BETA Draft incomplete Rod-shaped, Nonmotile, Pathogen Medical, Human Pathogen, Animal Pathogen, Biothreat Glanders, Pneumonia Host USA 68.4 Public Gi01142 000800_GCAT 334803 13988 638341031 5713 4774 NZ_AAIR00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei BACTERIAL Burkholderia mallei FMH ABI Genome PROTEOBACTERIA-BETA Draft incomplete Rod-shaped, Nonmotile, Pathogen Medical, Human Pathogen, Animal Pathogen, Biothreat Glanders, Pneumonia Host USA 68.2 Public Gi01143 000801_GCAT 334802 13987 638341029 2273 4846 NZ_AAIQ00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei BACTERIAL Burkholderia mallei 2002721280 ABI Genome PROTEOBACTERIA-BETA Draft incomplete Rod-shaped, Nonmotile, Pathogen Medical, Human Pathogen, Animal Pathogen, Biothreat Glanders, Pneumonia Host USA 68.4 Public Gi01489 000802_GCAT 370895 16352 638341028 5690 4736 NZ_AANX00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei BACTERIAL Burkholderia mallei PRL-20 Genome PROTEOBACTERIA-BETA Draft incomplete Rod-shaped, Nonmotile, Pathogen, Aerobe Medical, Human Pathogen, Animal Pathogen, Biothreat Glanders, Pneumonia Host USA 68 Public Gi01962 002589_GCAT 436115 19147 5700 NZ_AAZP00000000 TIGR NIH-NIAID Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia oklahomensis BACTERIAL Burkholderia oklahomensis C6786 Genome PROTEOBACTERIA-BETA Draft incomplete Rod-shaped, Nonmotile, Pathogen, Aerobe Medical, Human Pathogen Wound infection Host Wound infection in Oklahoma USA 67.1 Public Gi01963 002590_GCAT 441162 19535 7000 NZ_ABBG00000000 NMRC Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia oklahomensis BACTERIAL Burkholderia oklahomensis E0147 Genome PROTEOBACTERIA-BETA Draft incomplete Rod-shaped, Motile, Pathogen, Aerobe Medical, Human Pathogen Wound infection Host Ocular ulcer in Georgia USA 66.9 Public Gi01964 002591_GCAT 441163 19537 7000 NZ_ABBF00000000 NMRC Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 112 Genome PROTEOBACTERIA-BETA Draft incomplete Rod-shaped, Motile, Pathogen, Aerobe Medical, Human Pathogen Melioidosis Host Clinical isolate from Thailand USA 68 Public Gi01965 002592_GCAT 441154 19495 6900 NZ_ABBP00000000 NMRC Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 14 Genome PROTEOBACTERIA-BETA Draft incomplete Rod-shaped, Motile, Pathogen, Aerobe Medical, Human Pathogen Melioidosis Host Monkey liver USA 67.8 Public Gi01966 002593_GCAT 441160 19507 6700 NZ_ABBJ00000000 NMRC Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 381 (MSMB 43) Genome PROTEOBACTERIA-BETA Draft incomplete Rod-shaped, Motile, Pathogen, Aerobe Medical, Human Pathogen Melioidosis Host Drilling bore water USA 67 Public Gi01967 002594_GCAT 441157 19501 7000 NZ_ABBM00000000 NMRC Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 7894 Genome PROTEOBACTERIA-BETA Draft incomplete Rod-shaped, Motile, Pathogen, Aerobe Medical, Human Pathogen Melioidosis Host USA 67.6 Public Gi01968 002595_GCAT 441156 19497 7000 NZ_ABBO00000000 NMRC Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 9 Genome PROTEOBACTERIA-BETA Draft incomplete Rod-shaped, Motile, Pathogen, Aerobe Medical, Human Pathogen Melioidosis Host USA 67.8 Public Gi01969 002596_GCAT 441158 19503 6800 NZ_ABBL00000000 NMRC Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 91 Genome PROTEOBACTERIA-BETA Draft incomplete Rod-shaped, Motile, Pathogen, Aerobe Medical, Human Pathogen Melioidosis Host USA 67.8 Public Gi01970 002597_GCAT 441159 19505 6900 NZ_ABBK00000000 NMRC Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei B7210 Genome PROTEOBACTERIA-BETA Draft incomplete Rod-shaped, Motile, Pathogen, Aerobe Medical, Human Pathogen Melioidosis Host USA 67.9 Public Gi01971 002598_GCAT 441155 19499 6900 NZ_ABBN00000000 NMRC Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei BCC215 Genome PROTEOBACTERIA-BETA Draft incomplete Rod-shaped, Motile, Pathogen, Aerobe Medical, Human Pathogen Melioidosis Host Brazil outbreak strain from clinical specimen USA 68 Public Gi01972 002599_GCAT 441152 19491 7000 NZ_ABBR00000000 NMRC Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei DM98 (BCC11) Genome PROTEOBACTERIA-BETA incomplete Rod-shaped, Motile, Pathogen, Aerobe Medical, Human Pathogen Melioidosis Host Mucoid strain from a clinical specimen USA Public Gi01973 002600_GCAT 441161 19509 NMRC Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei NCTC 13177 (WKo97) Genome PROTEOBACTERIA-BETA Draft incomplete Rod-shaped, Motile, Pathogen, Aerobe Medical, Human Pathogen Melioidosis Host Clinical isolate from a Western Australian outbreak USA 68 Public Gi01974 002601_GCAT 441153 19493 7100 NZ_ABBQ00000000 NMRC Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia thailandensis BACTERIAL Burkholderia thailandensis Bt4 Genome PROTEOBACTERIA-BETA Draft incomplete Rod-shaped, Motile, Aerobe, Saprophyte None Soil Environmental isolate from northern Australia USA 67.6 Public Gi01975 002602_GCAT 441164 19533 6600 NZ_ABBH00000000 NMRC Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia thailandensis BACTERIAL Burkholderia thailandensis TXDOH Genome PROTEOBACTERIA-BETA Draft incomplete Rod-shaped, Motile, Aerobe, Saprophyte None Soil, Host, Blood Blood of 2 year old male USA 67.7 Public Gi01976 002603_GCAT 441165 19541 6515 NZ_ABBD00000000 NCBI NMRC Bacteria Proteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni jejuni CG8486 Genome PROTEOBACTERIA-EPSILON Draft incomplete Spiral-shaped, Nonsporulating, Motile Medical Food poisoning Host Patient with inflammatory diarrhea in Thailand USA 30 Public Gi01977 002604_GCAT 398000 17055 640963041 1597 1421 NZ_AASY00000000 NCBI NMRC Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei BACTERIAL Burkholderia mallei 10399 ABI ATCC 10399 Genome PROTEOBACTERIA-BETA Draft incomplete Pathogen, Rod-shaped, Nonmotile, Aerobe Medical, Biothreat, Human Pathogen, Animal Pathogen Glanders, Pneumonia Host USA 68.5 Public Gi01233 000803_GCAT 412021 13944 638341027 5933 4885 NZ_AAHN00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei BACTERIAL Burkholderia mallei GB8 horse 4 ABI Genome PROTEOBACTERIA-BETA Draft incomplete Pathogen, Rod-shaped, Nonmotile, Aerobe Medical, Animal Pathogen, Human Pathogen, Biothreat Glanders, Pneumonia Host USA 68.5 Public Gi00927 000804_GCAT 320390 13945 638341030 5804 4822 NZ_AAHO00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 1710a ABI Genome PROTEOBACTERIA-BETA Draft incomplete Rod-shaped, Motile, Aerobe, Pathogen Medical, Animal Pathogen Pneumonia, Bacteremia, Melioidosis Soil USA 68 Public Gi01002 000806_GCAT 320371 13950 638341037 7319 5502 NZ_AAHS00000000 NCBI TIGR NIH-NIAID Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei S13 ABI Genome PROTEOBACTERIA-BETA Draft incomplete Non-Pathogen, Rod-shaped, Motile, Aerobe Medical, Animal Pathogen, Human Pathogen, Biothreat Pneumonia, Bacteremia, Melioidosis Soil USA 68.1 Public Gi01004 000807_GCAT 320374 13951 638341041 7388 5702 NZ_AAHW00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 1655 ABI Genome PROTEOBACTERIA-BETA Draft incomplete Rod-shaped, Motile, Aerobe, Pathogen Medical, Animal Pathogen, Human Pathogen, Biothreat Pneumonia, Bacteremia, Melioidosis Soil USA 68 Public Gi01005 000808_GCAT 331109 13949 638341036 7029 5407 NZ_AAHR00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 1106b ABI Genome PROTEOBACTERIA-BETA Draft incomplete Rod-shaped, Motile, Aerobe, Pathogen Medical, Animal Pathogen, Biothreat, Human Pathogen Pneumonia, Bacteremia, Melioidosis Soil USA 68 Public Gi01390 000811_GCAT 357347 16181 638341035 8552 6518 NZ_AAMB00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 406e ABI Genome PROTEOBACTERIA-BETA Draft incomplete Rod-shaped, Motile, Aerobe, Pathogen Medical, Animal Pathogen, Biothreat, Human Pathogen Pneumonia, Bacteremia, Melioidosis Soil Clinical isolate from Thailand USA 68 Public Gi01391 000812_GCAT 360118 16231 638341038 7321 5600 NZ_AAMM00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei Pasteur ABI Genome PROTEOBACTERIA-BETA Draft incomplete Rod-shaped, Motile, Aerobe, Pathogen Medical, Animal Pathogen, Human Pathogen, Biothreat Pneumonia, Bacteremia, Melioidosis Soil USA 68 Public Gi01007 000813_GCAT 331978 13952 638341040 7346 5589 NZ_AAHV00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 1026b Genome PROTEOBACTERIA-BETA incomplete Pathogen, Aerobe, Motile, Rod-shaped Medical, Human Pathogen, Animal Pathogen, Biothreat Melioidosis Host USA Public Gi01164 000815_GCAT 28450 Univ of Washington Univ of Washington Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia vietnamiensis BACTERIAL Burkholderia vietnamiensis CF Genome PROTEOBACTERIA-BETA incomplete Nitrogen fixation, Rhizosphere-colonizing, Pollutant degrader Bioremediation, Environmental, Agricultural None Soil, Host USA 67 Public Gi00112 000817_GCAT 60552 9000 Joint Genome Institute, Michigan State Univ DOE Tiedje J http://www.msu.edu/unit/mic/facpages/tiedje.html Bacteria Proteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli BACTERIAL Campylobacter coli RM2228 ABI ATCC BAA-1061 Genome PROTEOBACTERIA-EPSILON Draft incomplete Facultative, Motile, Spiral-shaped, Pathogen, Nonsporulating Medical, Human Pathogen, Animal Pathogen Gastroenteritis, Septicemia Host, Intestinal microflora, Blood 42 Multi-drug-resistant isolate from a chicken carcass from an inspected slaughter plant USA 31 Public Gi00118 000819_GCAT 306254 12516 638341044 1860 1967 NZ_AAFL00000000 NCBI TIGR Bacteria Proteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter fetus BACTERIAL Campylobacter fetus Genome PROTEOBACTERIA-EPSILON incomplete Motile, Spiral-shaped, Pathogen Medical, Human Pathogen, Animal Pathogen Infertility, Septicemia, Meningitis, Genital infection Host, Intestinal microflora Argentina 40 Public Gi00119 000820_GCAT 196 7 1500 IIB-UNSAM IIB-UNSAM Sanchez DO dsanchez@iib.unsam.edu.ar Bacteria Proteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni Genome PROTEOBACTERIA-EPSILON complete Motile, Spiral-shaped, Pathogen, Food poisoning Medical, Human Pathogen, Animal Pathogen, Poultry Pathogen Food poisoning Wastewater USA Proprietary Gi00120 000821_GCAT 197 PathoGenome-TM Genome Therapeutics Bacteria Proteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni jejuni 81-176 23/36 ABI Genome PROTEOBACTERIA-EPSILON Draft incomplete Motile, Spiral-shaped, Pathogen, Food poisoning Medical, Human Pathogen Food poisoning Wastewater Outbreak of campylobacteriosis in Minnesota USA due to the consumption of contaminated milk USA 30 Public Gi02330 003052_GCAT 354242 17341 1616 NZ_AASL00000000 NCBI Yale Univ Bacteria Proteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni jejuni 260.94 ABI Genome PROTEOBACTERIA-EPSILON Draft incomplete Motile, Spiral-shaped, Pathogen, Food poisoning Medical, Human Pathogen, Animal Pathogen, Poultry Pathogen GBS, Food poisoning Host, Wastewater Red Cross Children's Hospital in Cape Town South Africa USA 30 Public Gi01261 000824_GCAT 360108 16229 638341049 1657 1716 NZ_AANK00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni jejuni HB93-13 ABI Genome PROTEOBACTERIA-EPSILON Draft incomplete Motile, Spiral-shaped, Pathogen, Food poisoning, Nonsporulating Medical, Human Pathogen, Animal Pathogen, Poultry Pathogen GBS, Food poisoning Host, Wastewater Feces of an 8-year-old boy in China with acute motor axonal neuropathy (AMAN) form of GBS USA 30.6 Public Gi01262 000825_GCAT 360112 16267 638341053 1710 1694 NZ_AANQ00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni jejuni CF93-6 ABI Genome PROTEOBACTERIA-EPSILON Draft incomplete Motile, Spiral-shaped, Pathogen, Food poisoning Medical, Human Pathogen, Animal Pathogen, Poultry Pathogen Food poisoning Host, Wastewater Patient in Japan diagnosed with MFS USA 30.5 Public Gi01263 000826_GCAT 360111 16265 638341052 1676 1757 NZ_AANJ00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni jejuni 84-25 ABI Genome PROTEOBACTERIA-EPSILON Draft incomplete Motile, Spiral-shaped, Pathogen, Food poisoning, Auxotroph, Nonsporulating Medical, Human Pathogen, Animal Pathogen, Poultry Pathogen Food poisoning Host, Wastewater Cerebrospinal fluid of a child with meningitis USA 30.4 Public Gi01264 000827_GCAT 360110 16367 638341051 1671 1748 NZ_AANT00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter lari BACTERIAL Campylobacter lari RM2100 ABI ATCC BAA-1060 Genome PROTEOBACTERIA-EPSILON Draft incomplete Motile, Spiral-shaped, Pathogen, Nonsporulating Medical, Human Pathogen, Animal Pathogen Gastroenteritis, Bacteremia, Diarrhea, Food poisoning Aquatic, Soil Clinical isolate USA 29.6 Public Gi00122 000832_GCAT 306263 12517 638341054 1562 1599 NZ_AAFK00000000 NCBI TIGR Bacteria Proteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter upsaliensis BACTERIAL Campylobacter upsaliensis RM3195 ABI ATCC BAA-1059 Genome PROTEOBACTERIA-EPSILON Draft incomplete Motile, Spiral-shaped, Pathogen, Nonsporulating Medical, Human Pathogen, Animal Pathogen Gastroenteritis, Diarrhea, Bacteremia, Septicemia Host Feces of a 4-year old patient with Guillain-Barre syndrome USA 34.3 Public Gi00123 000833_GCAT 306264 12518 638341055 1773 1934 NZ_AAFJ00000000 NCBI TIGR Bacteria Proteobacteria Rickettsiales unclassified Candidatus Pelagibacter Candidatus Pelagibacter ubique BACTERIAL Pelagibacter ubique SAR11 HTCC1002 ABI Genome PROTEOBACTERIA-ALPHA Draft incomplete Rod-shaped, Aerobe Environmental, MMI None Marine USA 29.8 Public Gi00836 000834_GCAT 314261 13577 638341056 1327 1393 NZ_AAPV00000000 Oregon State Univ, NCBI, JCVI J Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Ruegeria Ruegeria sp. R11 BACTERIAL Ruegeria sp R11 Genome PROTEOBACTERIA-ALPHA incomplete Pathogen Seaweed Pathogen, MMI Marine Bare Island Botany Bay Sydney Australia USA Public Gi01983 002610_GCAT 439497 19365 JCVI J Craig Venter Institute Moore Foundation Bacteria Proteobacteria Rickettsiales unclassified Candidatus Pelagibacter Candidatus Pelagibacter sp. HTCC7211 BACTERIAL Pelagibacter sp HTCC7211 Genome PROTEOBACTERIA-ALPHA incomplete Rod-shaped, Aerobe Environmental, MMI None Marine USA Public Gi01918 002542_GCAT 439493 19339 Oregon State Univ, JCVI J Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm Bacteria Chlorobi Chlorobiales Chlorobiaceae Pelodictyon Pelodictyon phaeoclathratiforme BACTERIAL Pelodictyon phaeoclathratiforme BU-1 ABI DSMZ 5477(T) Genome CHLOROBI Draft incomplete Photosynthetic, Green sulfur, Anaerobe, Phototroph, Nonmotile, Rod-shaped Biotechnological None Aquatic, Marine 15 - 25 USA 48.1 Public Gi00440 000835_GCAT 324925 13011 638341149 2967 2762 NZ_AAIK00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Planctomycetes Planctomycetales unclassified Candidatus Brocadia Candidatus Brocadia anammoxidans BACTERIAL Brocadia anammoxidans Genome PLANCTOMYCETES incomplete Anaerobe, Ammonia-oxidizer, Lithotroph, Coccus-shaped Biotechnological, Wastewater treatment None Aquatic Netherlands Public Gi00097 000836_GCAT 174632 13212 Univ of Nijmegen Bacteria Actinobacteria Actinomycetales Micrococcaceae Kocuria Kocuria rhizophila BACTERIAL Kocuria rhizophila DC2201 DSM 11926T Genome ACTINOBACTERIA incomplete Aerobe, Sphere-shaped Biotechnological None Japan 69 Public Gi01300 000837_GCAT 72000 NITE NITE Fujita N fujita-nobuyuki@nite.go.jp Bacteria Proteobacteria Sphingomonadales Sphingomonadaceae Sphingobium Sphingobium japonicum BACTERIAL Sphingobium japonicum UT26S NBRC 101211 Genome PROTEOBACTERIA-ALPHA incomplete None Japan Public Gi01844 000838_GCAT 332056 NITE Fujita N fujita-nobuyuki@nite.go.jp Archaea Euryarchaeota Halobacteriales Halobacteriaceae Haloarcula Haloarcula japonica ARCHAEAL Haloarcula japonica TR-1 NBRC 101032 Genome EURYARCHAEOTA-HALOBACTERIA incomplete Halophile Biotechnological None Japan Public Gi01845 000839_GCAT 29282 NITE Fujita N fujita-nobuyuki@nite.go.jp Bacteria Proteobacteria Rhodospirillales Acetobacteraceae Acetobacter Acetobacter sp. BACTERIAL Acetobacter sp NBRC 3283 NBRC 3283 Plants Genome PROTEOBACTERIA-ALPHA incomplete Acid-producing, Nitrogen fixation, Aerobe Agricultural None Japan Public Gi01846 000840_GCAT 440 NITE Fujita N fujita-nobuyuki@nite.go.jp Bacteria Deferribacteres Deferribacterales Deferribacteraceae Deferribacter Deferribacter desulfuricans BACTERIAL Deferribacter desulfuricans SSM1 NBRC 101012, DSM 14738 Genome DEFERRIBACTERES incomplete Anaerobe, Heterotroph, Thermophile, Rod-shaped, Motile None 5-7.5 40 - 70 Deep-sea hydrothermal vent chimney at the Suiyo Seamount in the Izu-Bonin Arc in Japan Japan 38.6 Public Gi01847 000841_GCAT 197162 NITE Fujita N fujita-nobuyuki@nite.go.jp Bacteria Firmicutes Lactobacillales Enterococcaceae Tetragenococcus Tetragenococcus halophilus BACTERIAL Tetragenococcus (Pediococcus) halophilus NBRC 12172 NBRC 12172 Genome FIRMICUTES incomplete None Japan Public Gi01848 000842_GCAT 51669 NITE Fujita N fujita-nobuyuki@nite.go.jp Bacteria Cyanobacteria Oscillatoriales unclassified Arthrospira Arthrospira platensis BACTERIAL Spirulina (Arthrospira) platensis NIES39 Genome CYANOBACTERIA incomplete Spiral-shaped Food industry, Dietary supplement None Aquatic Japan Public Gi01849 000843_GCAT 118562 NITE Fujita N fujita-nobuyuki@nite.go.jp Bacteria Actinobacteria Actinomycetales Propionibacteriaceae Microlunatus Microlunatus phosphovorus BACTERIAL Microlunatus phosphovorus NM-1 NBRC 101784 Genome ACTINOBACTERIA incomplete Polyphosphate-accumulating, Coccus-shaped, Aerobe, Chemoorganotroph Biotechnological, EBPR, Environmental None Sludge Activated sludge Japan 67.9 Public Gi01850 000844_GCAT 29405 NITE Fujita N fujita-nobuyuki@nite.go.jp Bacteria Proteobacteria Rhodospirillales Acetobacteraceae Gluconacetobacter Gluconacetobacter xylinus BACTERIAL Gluconacetobacter (Acetobacter) xylinus NBRC 3288 NBRC 3288 Genome PROTEOBACTERIA-ALPHA incomplete None Japan Public Gi01851 000845_GCAT 28448 NITE Fujita N fujita-nobuyuki@nite.go.jp Bacteria Actinobacteria Actinomycetales Micromonosporaceae Actinoplanes Actinoplanes missouriensis BACTERIAL Actinoplanes missouriensis NBRC 102363 NBRC 102363 Genome ACTINOBACTERIA incomplete Biotechnological, Antibiotic production None Japan Public Gi01852 000846_GCAT 1866 NITE Fujita N fujita-nobuyuki@nite.go.jp Bacteria Actinobacteria Actinomycetales Streptomycetaceae Kitasatospora Kitasatospora setae BACTERIAL Kitasatospora setae NBRC 14216 (KM-6054) NBRC 14216 Genome ACTINOBACTERIA incomplete None Japan Public Gi01853 000847_GCAT 2066 NITE Fujita N fujita-nobuyuki@nite.go.jp Bacteria Proteobacteria Burkholderiales unclassified Rubrivivax Rubrivivax gelatinosus BACTERIAL Rubrivivax gelatinosus IL144 NBRC 100245 Genome PROTEOBACTERIA-BETA incomplete Methylotroph, Facultative, Rod-shaped, Phototroph Environmental, Bioremediation, Biotechnological None Aquatic, Fresh water, Sludge Japan Public Gi02035 002664_GCAT 28068 NITE Fujita N fujita-nobuyuki@nite.go.jp Bacteria Firmicutes Bacillales Bacillaceae Amphibacillus Amphibacillus xylanus BACTERIAL Amphibacillus xylanus NBRC 15112 NBRC 15112 Genome FIRMICUTES incomplete Anaerobe, Sporulating, Xylan degrader, Alkaliphile None Japan Public Gi02036 002665_GCAT 1449 NITE Fujita N fujita-nobuyuki@nite.go.jp Bacteria Firmicutes Clostridiales Oscillospiraceae Oscillibacter Oscillibacter valericigenes BACTERIAL Oscillibacter valericigenes Sjm18-20 NBRC 101213, DSM 18026 Genome FIRMICUTES incomplete incomplete Mesophile, Anaerobe, Nonsporulating, Rod-shaped, Motile None 6 - 6.5 30 Alimentary canal of a Japanese corbicula clam Japan Public Gi02484 003209_GCAT 351091 NITE Fujita N fujita-nobuyuki@nite.go.jp Bacteria Actinobacteria Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum BACTERIAL Bifidobacterium longum BORI Genome ACTINOBACTERIA incomplete incomplete Probiotic, Anti-rotaviral, Rod-shaped, Nonsporulating, Nonmotile, Anaerobe, Mesophile Medical None Host, Human intestinal microflora 37 - 41 Infant feces Korea Public Gi02485 003210_GCAT 478445 21041 KRIBB Archaea Euryarchaeota Methanococcales Methanococcaceae Methanococcus Methanococcus maripaludis ARCHAEAL Methanococcus maripaludis KA1 NBRC 102054 Genome EURYARCHAEOTA-METHANOCOCCI incomplete Methanogen, Motile, Obligate anaerobe, Nonsporulating, Hydrogenotrophic, Nitrogen fixation, Lithotroph Biotechnological, Energy production None Aquatic Japan Public Gi02037 002666_GCAT 39152 NITE Fujita N fujita-nobuyuki@nite.go.jp Bacteria Firmicutes Clostridiales Acidaminococcaceae Selenomonas Selenomonas ruminantium BACTERIAL Selenomonas ruminantium lactilytica TAM642 Genome FIRMICUTES incomplete Crescent-shaped, Anaerobe, Non-Pathogen Medical None Host, Gastrointestinal tract, Sludge Bovine rumen Japan Public Gi02038 002667_GCAT 114197 NITE Fujita N fujita-nobuyuki@nite.go.jp Bacteria Proteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas paucimobilis BACTERIAL Sphingomonas paucimobilis SYK-6 Genome PROTEOBACTERIA-ALPHA incomplete Lignin degrader Biotechnological, Ecological None Soil, Host Pulp-bleaching wastewater in Japan Japan Public Gi02039 002668_GCAT 13689 NITE Fujita N fujita-nobuyuki@nite.go.jp Bacteria Actinobacteria environmental samples unclassified unclassified uncultured Rubrobacteridae bacterium BACTERIAL Actinobacterium sp YM16-304 Genome ACTINOBACTERIA incomplete None Aquatic Japan Public Gi02040 002687_GCAT 78537 NITE Fujita N fujita-nobuyuki@nite.go.jp Bacteria Planctomycetes Planctomycetales unclassified Candidatus Kuenenia Candidatus Kuenenia stuttgartiensis BACTERIAL Candidatus Kuenenia stuttgartiensis Metagenome PLANCTOMYCETES Draft incomplete Anaerobe, Ammonia-oxidizer Biotechnological, Wastewater treatment None European Consortium Public Gi00307 000848_GCAT 174633 16685 CT573071-CT573074 Genoscope, Univ of Vienna, Univ of Nijmegen Bacteria Proteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter sp. K31 BACTERIAL Caulobacter sp K31 ABI 13x Genome PROTEOBACTERIA-ALPHA Draft incomplete Chlorophenol degrading, Aerobe, Motile, Rod-shaped Environmental, Bioremediation None Aquatic USA 67.2 Public Gi01009 000849_GCAT 366602 16306 638341058 5876 5404 NZ_AATH00000000 NCBI Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Bacteroidetes Flavobacteriales Flavobacteriaceae Dokdonia Dokdonia donghaensis BACTERIAL Dokdonia (Cellulophaga) donghaensis MED134 ABI Genome BACTEROIDETES Draft incomplete Environmental, MMI None Marine Mediterranean Sea at 1 meter depth USA 38.2 Public Gi00837 000850_GCAT 313590 13544 638341059 3302 2944 NZ_AAMZ00000000 NCBI, JCVI J Craig Venter Institute, Kalmar Univ Moore Foundation Pinhassi J http://halia.hik.se/start.jsp?page=members/jarone%20pinhassi Bacteria Cyanobacteria unclassified unclassified Acaryochloris Acaryochloris sp. CCMEE 5410 BACTERIAL Acaryochloris sp CCMEE 5410 Genome CYANOBACTERIA incomplete Free-living, Sphere-shaped, Aerobe Environmental, MMI None Marine Shallow waters from Salton Sea California USA Public Gi01399 000851_GCAT 310037 16707 4200 JCVI J Craig Venter Institute, Univ of Oregon Moore Foundation Wood M http://evolution.uoregon.edu/mwood.htm Bacteria Proteobacteria unclassified unclassified Candidatus Accumulibacter Candidatus Accumulibacter phosphatis BACTERIAL Accumulibacter phosphatis Metagenome PROTEOBACTERIA-BETA incomplete Environmental, Bioremediation, Wastewater treatment None Sludge USA 63 Public Gi01585 000852_GCAT 327160 5500 Joint Genome Institute DOE Hugenholtz, P PHugenholtz@lbl.gov Bacteria Proteobacteria Oceanospirillales Alcanivoracaceae Alcanivorax Alcanivorax sp. DG881 BACTERIAL Alcanivorax sp DG881 Genome PROTEOBACTERIA-GAMMA incomplete Oil degrading, Halophile, Oligotroph, Nonmotile, Rod-shaped, Aerobe, Heterotroph Environmental, MMI None Marine Derwent estuary in Tasmania Australia USA Public Gi01400 000853_GCAT 236097 19279 JCVI J Craig Venter Institute, Univ of Tasmania Moore Foundation Bolch C http://fcms.its.utas.edu.au/scieng/aqua/ Bacteria Proteobacteria Campylobacterales Campylobacteraceae Arcobacter Candidatus Arcobacter sulfidicus BACTERIAL Arcobacter sulfidicus Genome PROTEOBACTERIA-EPSILON incomplete Chemolithoautotroph, Sulfur oxidizer, Motile, Rod-shaped Environmental, MMI None Marine, Sediment Sulfidic coastal sediments in Woods Hole USA Public Gi01401 000854_GCAT 162154 19297 JCVI J Craig Venter Institute, Woods Hole Oceanographic Institute Moore Foundation Sievert S http://www.whoi.edu/hpb/Site.do?id=1273 Bacteria unclassified unclassified unclassified Candidatus Ovobacter Candidatus Ovobacter propellens BACTERIAL Ovobacter propellens Op_Nibab3 Genome UNCLASSIFIED incomplete Oval-shaped, Motile Environmental, MMI None Marine, Sediment Marine sediments in Denmark USA Public Gi01978 002605_GCAT 439487 19335 J Craig Venter Institute Moore Foundation Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica SL486 (CVM35945) Heidelberg ABI Genome PROTEOBACTERIA-GAMMA incomplete incomplete Rod-shaped, Motile, Facultative Environmental Gastroenteritis USA Public Gi02189 002889_GCAT 454164 20065 J Craig Venter Institute Bacteria Firmicutes unclassified unclassified unclassified Clostridium innocuum BACTERIAL Clostridium innocuum JCM1292 ABI Genome FIRMICUTES incomplete incomplete Anaerobe, Sporulating, Commensal None Host, Human intestinal microflora Japan Public Gi02190 002890_GCAT 1522 Univ of Tokyo Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O26 (EHEC) ABI Genome PROTEOBACTERIA-GAMMA complete incomplete Pathogen, Facultative, Motile, Rod-shaped, Nonsporulating Medical, Human Pathogen Diarrhea Host, Human intestinal microflora Japan Public Gi02191 002891_GCAT 404399 5500 Univ of Tokyo, Miyazaki Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli c7122 ABI Genome PROTEOBACTERIA-GAMMA incomplete incomplete Pathogen, Facultative, Motile, Rod-shaped, Nonsporulating, Mesophile Medical, Human Pathogen Diarrhea Host, Human intestinal microflora 37 USA Public Gi02448 003182_GCAT 562 20733 5500 Arizona State Univ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O111 (EHEC) ABI Genome PROTEOBACTERIA-GAMMA incomplete incomplete Pathogen, Facultative, Motile, Rod-shaped, Nonsporulating Medical, Human Pathogen Diarrhea Host, Human intestinal microflora Japan Public Gi02192 002892_GCAT 562 5500 Univ of Tokyo, Miyazaki Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O103 (EHEC) ABI Genome PROTEOBACTERIA-GAMMA complete incomplete Pathogen, Facultative, Motile, Rod-shaped, Nonsporulating Medical, Human Pathogen Diarrhea Host, Human intestinal microflora Japan Public Gi02193 002893_GCAT 562 5500 Univ of Tokyo, Miyazaki Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12 WACKER ABI, 454 Genome PROTEOBACTERIA-GAMMA complete complete Pathogen, Facultative, Motile, Rod-shaped, Nonsporulating Medical, Human Pathogen Diarrhea Host, Human intestinal microflora Germany Proprietary Gi02339 003061_GCAT 562 5500 Eurofins Medigenomix GmbH, MWG Biotech AG, Wacker Chemie AG Baumgartl N nadine.baumgartl@wacker.com Bacteria Bacteroidetes Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas gingivalis BACTERIAL Porphyromonas gingivalis ATCC 33277 ABI ATCC 33277 Genome BACTEROIDETES complete incomplete Pathogen, Nonmotile, Rod-shaped, Anaerobe, Nonsporulating Medical, Human Pathogen Periodontal infection, Dental plaque Host, Oral microflora, Gastrointestinal tract, Respiratory tract, Colon Japan Public Gi02194 002894_GCAT 431947 2300 Univ of Tokyo, Nagasaki Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium chauvoei BACTERIAL Clostridium chauvoei ABI Genome FIRMICUTES complete incomplete Pathogen, Obligate anaerobe, Sporulating, Motile, Rod-shaped Medical, Human Pathogen, Animal Pathogen Blackleg, Black quarter Host Japan Public Gi02195 002895_GCAT 46867 3000 Univ of Tokyo, Kanazawa Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium septicum BACTERIAL Clostridium septicum ABI Genome FIRMICUTES complete incomplete Pathogen, Obligate anaerobe, Sporulating, Motile, Rod-shaped Medical, Human Pathogen, Animal Pathogen Host Japan Public Gi02196 002896_GCAT 1504 Univ of Tokyo, Kanazawa Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Proteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas elongata BACTERIAL Halomonas elongata ABI Genome PROTEOBACTERIA-GAMMA complete incomplete Halophile, Rod-shaped, Motile, Facultative, Nonsporulating Biotechnological None Aquatic Japan Public Gi02197 002897_GCAT 2746 4100 Univ of Tokyo, Osaka Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Firmicutes Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus reuteri BACTERIAL Lactobacillus reuteri JCM1112 ABI Genome FIRMICUTES complete incomplete Probiotic, Non-Pathogen, Rod-shaped, Facultative, Nonmotile Food industry, Biotechnological None Host, Human intestinal microflora, Mammalian intestinal microflora, Birds intestinal microflora Japan Public Gi02198 002898_GCAT 1598 2300 Univ of Tokyo, Azabu Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Firmicutes Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus fermentum BACTERIAL Lactobacillus fermentum IFO 3956 ABI Genome FIRMICUTES complete incomplete Probiotic, Non-Pathogen, Rod-shaped, Facultative, Nonmotile Food industry, Biotechnological None Host, Human intestinal microflora, Mammalian intestinal microflora, Birds intestinal microflora Japan Public Gi02199 002899_GCAT 334390 2300 Univ of Tokyo, Azabu Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Proteobacteria Thiotrichales Piscirickettsiaceae Cycloclasticus Cycloclasticus sp. 2-1B BACTERIAL Cycloclasticus sp. TU126 ABI Genome PROTEOBACTERIA-GAMMA complete incomplete Heterotroph, Aerobe, Motile, Rod-shaped, PAH-degrading Biotechnological None Aquatic Japan Public Gi02200 002900_GCAT 34067 2300 Univ of Tokyo, Nihon Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli SE11 ABI Genome PROTEOBACTERIA-GAMMA complete incomplete None Host, Human intestinal microflora Japan Public Gi02201 002901_GCAT 562 5000 Univ of Tokyo, Miyazaki Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli SE15 ABI Genome PROTEOBACTERIA-GAMMA complete incomplete None Host, Human intestinal microflora Japan Public Gi02202 002902_GCAT 562 5000 Univ of Tokyo, Miyazaki Univ, RIKEN Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Actinobacteria Actinomycetales Streptomycetaceae Streptomyces Streptomyces griseus BACTERIAL Streptomyces griseus griseus NBRC 13350 ABI Genome ACTINOBACTERIA complete incomplete Aerobe, Nonmotile, Streptomycin producer, Sporulating Biotechnological, Medical, Anticancer agent None Soil 25 - 35 Japan Public Gi02203 002903_GCAT 67263 20085 9000 Univ of Tokyo Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus mutans BACTERIAL Streptococcus mutans ABI Genome FIRMICUTES complete incomplete Pathogen, Facultative, Nonmotile, Nonsporulating, Facultative Medical, Human Pathogen, Dental Pathogen Dental caries Host, Oral microflora Japan Public Gi02204 002904_GCAT 1309 2400 Univ of Tokyo Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Proteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia japonica BACTERIAL Rickettsia japonica ABI Genome PROTEOBACTERIA-ALPHA complete incomplete Rod-shaped, Aerobe, Intracellular, Pathogen, Motile Medical, Human Pathogen Spotted fever Host Japan 31.2 Public Gi02205 002905_GCAT 35790 1000 Univ of Tokyo, Yamaguchi Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Chlamydiae Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila caviae BACTERIAL Chlamydophila caviae ABI Genome CHLAMYDIAE complete incomplete Pathogen, Rod-shaped Medical, Swine Pathogen, Animal Pathogen Pharyngitis, Bronchitis, Pneumonia, Respiratory infection Host Japan Public Gi02206 002906_GCAT 83557 1200 Univ of Tokyo, Okayama Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. BACTERIAL Bacteroides sp A_01 ABI Genome BACTEROIDETES incomplete incomplete Anaerobe, Nonmotile, Nonsporulating, Rod-shaped, Commensal None Host, Human intestinal microflora Japan Public Gi02207 002907_GCAT 29523 5000 Univ of Tokyo, RIKEN, Tokushima Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides massiliensis BACTERIAL Bacteroides massiliensis A_03 ABI Genome incomplete incomplete Anaerobe, Rod-shaped, Commensal Host, Blood Blood culture of a healthy baby born at term Japan 49 Public Gi02208 002908_GCAT 204516 5000 Univ of Tokyo, RIKEN, Tokushima Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Actinobacteria Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium breve BACTERIAL Bifidobacterium breve JCM1192 ABI JCM1192 Genome ACTINOBACTERIA incomplete incomplete Commensal Japan Public Gi02209 002909_GCAT 1685 2000 Univ of Tokyo, Azabu Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Actinobacteria Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium bifidum BACTERIAL Bifidobacterium bifidum JCM1255 ABI JCM1255 Genome ACTINOBACTERIA complete incomplete Anaerobe, Rod-shaped, Nonsporulating, Nonmotile, Commensal Biotechnological, Food industry None Host Japan Public Gi02210 002910_GCAT 1681 2000 Univ of Tokyo, Azabu Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Actinobacteria Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium catenulatum BACTERIAL Bifidobacterium catenulatum JCM1194 ABI JCM1194 Genome ACTINOBACTERIA incomplete incomplete Anaerobe, Rod-shaped, Nonsporulating, Nonmotile, Commensal Biotechnological, Food industry None Host Japan Public Gi02211 002911_GCAT 1686 2000 Univ of Tokyo, Azabu Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Raoultella Raoultella ornithinolytica BACTERIAL Raoultella ornithinolytica AA097 ABI Genome PROTEOBACTERIA-GAMMA complete incomplete Commensal Japan Public Gi02212 002912_GCAT 54291 5400 Univ of Tokyo, Miyazaki Univ, RIKEN Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Firmicutes unclassified unclassified unclassified Clostridium ramosum BACTERIAL Clostridium ramosum JCM1298 ABI JCM1298 Genome FIRMICUTES incomplete incomplete Rod-shaped, Sporulating, Anaerobe, Commensal Soil Japan Public Gi02213 002913_GCAT 1547 3000 Univ of Tokyo, RIKEN, Tokushima Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Firmicutes unclassified unclassified unclassified Clostridium ramosum BACTERIAL Clostridium ramosum DSM 1402 ABI, 454 DSM 1402 Genome FIRMICUTES incomplete incomplete Rod-shaped, Sporulating, Anaerobe, Commensal Medical, HGMI Opportunistic infection Host, Human intestinal microflora USA Public Gi02294 003016_GCAT 445974 19663 3000 Washington Univ Washington Univ Bacteria Firmicutes Clostridiales Lachnospiraceae Ruminococcus Ruminococcus hydrogenotrophicus BACTERIAL Ruminococcus hydrogenotrophicus DSM 10507 ABI, 454 DSM 10507 Genome FIRMICUTES incomplete incomplete Nonsporulating, Anaerobe, Mesophile, Coccus-shaped Medical, HGMI None Host, Human intestinal microflora Feces of a non-methane-excreting human subject USA Public Gi02486 003211_GCAT 476272 21007 Washington Univ Bacteria Firmicutes Clostridiales Eubacteriaceae Eubacterium Eubacterium siraeum BACTERIAL Eubacterium siraeum DSM 15702 ABI, 454 8.8x DSM 15702 Genome FIRMICUTES Draft incomplete Rod-shaped, Sporulating, Anaerobe, Commensal Medical, HGMI None Host, Human intestinal microflora Human feces USA 44 Public Gi02295 003017_GCAT 428128 18921 2654 NZ_ABCA00000000 NCBI, Washington Univ Washington Univ Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis holarctica URFT1 ABI Genome PROTEOBACTERIA-GAMMA incomplete incomplete Nonmotile, Rod-shaped, Aerobe, Pathogen Medical, Human Pathogen Type B tularemia Host Lymph node of a patient with oculo-glandular tularemia France Public Gi02296 003018_GCAT 445226 19645 CNRS Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes XFL0605 ABI Genome FIRMICUTES incomplete incomplete Rod-shaped, Motile, Facultative, Pathogen, Chemoorganotroph Medical, Human Pathogen Food poisoning Food, Aquatic, Soil 1 - 45 China Public Gi02297 003019_GCAT 447719 19793 Hubei Entry - Exit Inspection and Quarantine Bureau Bacteria Bacteroidetes Sphingobacteriales Flexibacteraceae Spirosoma Spirosoma linguale BACTERIAL Spirosoma linguale DSM 74 ABI, 454 DSM 74, ATCC 33905 Genome BACTEROIDETES incomplete incomplete GEBA, Tree of Life None Aquatic, Fresh water Laboratory water bath USA Public Gi02298 003020_GCAT 108 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Planctomycetes Planctomycetales Planctomycetaceae Isosphaera Isosphaera pallida BACTERIAL Isosphaera pallida IS1B, ATCC 43644 ABI, 454 ATCC 43644, DSM 9630 Genome PLANCTOMYCETES incomplete incomplete GEBA, Tree of Life None Aquatic, Hot spring 45 Kah-nee-tah Hot spring USA 62 Public Gi02488 003213_GCAT 128 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria unclassified unclassified unclassified Thermobaculum Thermobaculum terrenum BACTERIAL Thermobaculum terrenum YNP1, ATCC BAA-798 ABI, 454 ATCC BAA-798, CCMEE 7001 Genome CHLOROFLEXI incomplete incomplete Thermophile, Aerobe, Nonsporulating, Rod-shaped, Pink-colored, Heterotroph GEBA, Tree of Life None Soil 7 65 - 92 Soil in Yellowstone National Park, Wyoming, USA USA 56.4 Public Gi02489 003214_GCAT 166501 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Fusobacteria Fusobacteriales Fusobacteriaceae Sebaldella Sebaldella termitidis BACTERIAL Sebaldella termitidis ATCC 33386 ABI, 454 ATCC 33386, NCTC 11300 Genome FUSOBACTERIA incomplete incomplete Uricolytic, Anaerobe, Rod-shaped GEBA, Tree of Life None Host, Gut USA Public Gi02490 003215_GCAT 826 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Oceanospirillales Oceanospirillaceae Oleispira Oleispira antarctica BACTERIAL Oleispira antarctica RB-8, DSM 14852 DSM 14852 Genome PROTEOBACTERIA-GAMMA incomplete incomplete Psychrophile, Aerobe, Motile Biotechnological None Marine, Antarctic Hydrocarbon-degrading enrichment cultures obtained from Antarctic coastal marine environments (Rod Bay, Ross Sea) Germany 43 Public Gi02491 003217_GCAT 188908 4400 Max Planck Institute Max Planck Society Kube M kube@molgen.mpg.de Bacteria Bacteroidetes Sphingobacteriales Flexibacteraceae Flectobacillus Flectobacillus major BACTERIAL Flectobacillus major DSM 103 ABI, 454 DSM 103, ATCC 29496, VKM B-859 Genome BACTEROIDETES incomplete incomplete GEBA, Tree of Life None Aquatic, Fresh water USA Public Gi02299 003021_GCAT 103 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Deinococcus-Thermus Thermales Thermaceae Meiothermus Meiothermus ruber BACTERIAL Meiothermus ruber DSM 1279 ABI, 454 DSM 1279, ATCC 35948, VKM B-1258 Genome THERMI incomplete incomplete GEBA, Tree of Life None USA 64 Public Gi02300 003022_GCAT 277 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Planctomycetes Planctomycetales Planctomycetaceae Planctomyces Planctomyces limnophilus BACTERIAL Planctomyces limnophilus DSM 3776 ABI, 454 DSM 3776, ATCC 43296, IFAM 1008 Genome PLANCTOMYCETES incomplete incomplete Sphere-shaped GEBA, Tree of Life None Aquatic, Marine Surface water USA 56 Public Gi02301 003023_GCAT 120 5204 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Desulfovibrionales Desulfomicrobiaceae Desulfomicrobium Desulfomicrobium baculatum BACTERIAL Desulfomicrobium baculatum DSM 4028 ABI, 454 DSM 4028, VKM B-1378 Genome PROTEOBACTERIA-DELTA incomplete incomplete Anaerobe, Rod-shaped, Sulfate reducer, Nonsporulating GEBA, Tree of Life None 30 Manganese ore USA Public Gi02302 003024_GCAT 899 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Bacteroidetes Sphingobacteriales unclassified Rhodothermus Rhodothermus marinus BACTERIAL Rhodothermus marinus DSM 4252 ABI, 454 DSM 4252, ATCC 43812 Genome BACTEROIDETES incomplete incomplete Thermophile, Halophile GEBA, Tree of Life, Biotechnological None Hot spring 65 Submarine hot spring in Iceland USA Public Gi02303 003025_GCAT 29549 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Bacteroidetes Sphingobacteriales Flammeovirgaceae Thermonema Thermonema lapsum BACTERIAL Thermonema lapsum DSM 5718 ABI, 454 DSM 5718, ATCC 43542 Genome BACTEROIDETES incomplete incomplete Thermophile GEBA, Tree of Life None Hot spring 60 Hot spring USA Public Gi02304 003026_GCAT 28195 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Bacteroidetes Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga ochracea BACTERIAL Capnocytophaga ochracea DSM 7271 ABI, 454 DSM 7271, ATCC 27872, JCM 12966 Genome BACTEROIDETES incomplete incomplete Opportunistic Pathogen GEBA, Tree of Life, Medical, Human Pathogen Periodontal infection Host, Human oral microflora Human oral cavity USA Public Gi02305 003027_GCAT 1018 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Campylobacterales Campylobacteraceae Arcobacter Arcobacter nitrofigilis BACTERIAL Arcobacter nitrofigilis DSM 7299 ABI, 454 DSM 7299, ATCC 33309, CCUG 15893, LMG 7604, NCTC 12251 Spartina alterniflora Genome PROTEOBACTERIA-EPSILON incomplete incomplete Microanaerobe, Nitrogen fixation GEBA, Tree of Life None Host 25 Roots of Spartina alterniflora USA Public Gi02306 003028_GCAT 28199 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Alteromonadales Ferrimonadaceae Ferrimonas Ferrimonas balearica BACTERIAL Ferrimonas balearica DSM 9799 ABI, 454 DSM 9799 Genome PROTEOBACTERIA-GAMMA incomplete incomplete Facultative, Iron reducer GEBA, Tree of Life None Aquatic, Marine 28 Surface sediment in harbor of Palma de Mallorca, Spain USA Public Gi02307 003029_GCAT 44012 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Deinococcus-Thermus Thermales Thermaceae Meiothermus Meiothermus silvanus BACTERIAL Meiothermus silvanus DSM 9946 ABI, 454 DSM 9946, ATCC 700542 Genome THERMI incomplete incomplete Thermophile GEBA, Tree of Life None Hot spring 50 Hot spring from Portugal USA 64 Public Gi02308 003030_GCAT 52022 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Acidaminococcaceae Dialister Dialister pneumosintes BACTERIAL Dialister pneumosintes DSM 11619 ABI, 454 DSM 11619, ATCC 33048, CCUG 21025 Genome FIRMICUTES incomplete incomplete Anaerobe, Rod-shaped GEBA, Tree of Life, Human Pathogen, Medical Periodontitis Host 37 Human nasal passage abscess USA Public Gi02309 003031_GCAT 39950 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Bacteroidetes Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium spiritivorum BACTERIAL Sphingobacterium spiritivorum DSM 11722 ABI, 454 DSM 11722, ATCC 33861, CDC E7288, GIFU 3101, JCM 1277, NCTC 11386 Genome BACTEROIDETES incomplete incomplete GEBA, Tree of Life None 28 Intrauterine specimen USA Public Gi02310 003032_GCAT 258 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Anaeroplasmatales Erysipelotrichaceae Holdemania Holdemania filiformis BACTERIAL Holdemania filiformis VPI J1-31B-1, DSM 12042 ABI, 454 DSM 12042, ATCC 51649 Genome FIRMICUTES incomplete incomplete Anaerobe GEBA, Tree of Life None Host, Human intestinal microflora 37 Human feces USA Public Gi02311 003033_GCAT 61171 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Fusobacteria Fusobacteriales Fusobacteriaceae Streptobacillus Streptobacillus moniliformis BACTERIAL Streptobacillus moniliformis DSM 12112 ABI, 454 DSM 12112, ATCC 14647 Genome FUSOBACTERIA incomplete incomplete Facultative, Rod-shaped, Pathogen, Nonmotile, Nonsporulating GEBA, Tree of Life, Medical, Human Pathogen Rat-bite fever, Haverhill fever, Endocarditis Host Patient with rat-bite fever in France USA 25 Public Gi02312 003034_GCAT 34105 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Spirochaetes Spirochaetales Brachyspiraceae Brachyspira Brachyspira murdochii BACTERIAL Brachyspira murdochii 56-150, DSM 12563 ABI, 454 DSM 12563, ATCC 51284, CIP 105832 Genome SPIROCHAETES incomplete incomplete Anaerobe, Chemoorganotroph, Motile GEBA, Tree of Life None Host, Intestinal microflora Pig USA 27 Public Gi02313 003051_GCAT 84378 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria unclassified unclassified Kangiella Kangiella koreensis BACTERIAL Kangiella koreensis SW-125, DSM 16069 ABI, 454 DSM 16069, KCTC 12182 Genome PROTEOBACTERIA-GAMMA incomplete incomplete Nonmotile, Nonsporulating, Rod-shaped GEBA, Tree of Life None Marine 7-8 30 - 37 Sea water of tidal flat sediment of the Yellow Sea in South Korea USA 44 Public Gi02314 003036_GCAT 261964 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Bacteroidetes Flavobacteriales Flavobacteriaceae Chryseobacterium Chryseobacterium gleum BACTERIAL Chryseobacterium gleum F93, DSM 16776 ABI, 454 DSM 16776, ATCC 35910, CCUG 14555, CIP 103039, JCM 2410, LMG 8334, NCTC 11432 Genome BACTEROIDETES incomplete incomplete Aerobe GEBA, Tree of Life Nosocomial infection 30 Human high vaginal swab in United Kingdom USA Public Gi02315 003037_GCAT 250 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Bacteroidetes Sphingobacteriales Flexibacteraceae Leadbetterella Leadbetterella byssophila BACTERIAL Leadbetterella byssophila 4M15, DSM 17132 ABI, 454 DSM 17132, KACC 11308 Genome BACTEROIDETES incomplete incomplete Aerobe, Rod-shaped, Nonmotile GEBA, Tree of Life None Cotton-waste composts used as mushroom cultivation in South Korea USA 33 Public Gi02316 003038_GCAT 316068 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Coriobacteriales Coriobacteriaceae Atopobium Atopobium parvulum BACTERIAL Atopobium parvulum IPP 1246, DSM 20469 ABI, 454 DSM 20469, ATCC 33793 Genome ACTINOBACTERIA incomplete incomplete Anaerobe, Nonsporulating GEBA, Tree of Life None Host, Oral microflora 37 USA Public Gi02317 003039_GCAT 1382 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Peptostreptococcaceae Anaerococcus Anaerococcus prevotii BACTERIAL Anaerococcus prevotii PC 1, DSM 20548 ABI, 454 DSM 20548, ATCC 9321 Genome FIRMICUTES incomplete incomplete Anaerobe GEBA, Tree of Life None Host, Skin microflora, Mouth microflora, Vagina microflora 37 Human plasma USA Public Gi02318 003040_GCAT 33034 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Acidaminococcaceae Acidaminococcus Acidaminococcus fermentans BACTERIAL Acidaminococcus fermentans VR4, DSM 20731 ABI, 454 DSM 20731, ATCC 25085 Genome FIRMICUTES incomplete incomplete Anaerobe, Coccus-shaped, Mesophile GEBA, Tree of Life None Host, Intestinal tract 7 37 Pig gut USA Public Gi02319 003041_GCAT 905 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Intrasporangiaceae Intrasporangium Intrasporangium calvum BACTERIAL Intrasporangium calvum DSM 43043 ABI, 454 DSM 43043, ATCC 23552, CUB 430, IFO 12989, IMET 7816, JCM 3097, KCC A-0097, NBRC 12989, NCIB 10167 Genome ACTINOBACTERIA incomplete incomplete GEBA, Tree of Life None Air 28 Air in a school dining room USA Public Gi02320 003042_GCAT 53358 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Segniliparaceae Segniliparus Segniliparus rotundus BACTERIAL Segniliparus rotundus DSM 44985 ABI, 454 DSM 44985, ATCC BAA-972, CDC 1076, CIP 108378, JCM 13578 Genome ACTINOBACTERIA incomplete incomplete Rod-shaped GEBA, Tree of Life None 28 Human sputum USA 68 Public Gi02321 003043_GCAT 286802 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Deferribacteres Deferribacterales Deferribacteraceae Denitrovibrio Denitrovibrio acetiphilus BACTERIAL Denitrovibrio acetiphilus N2460, DSM 12809 ABI, 454 DSM 12809 Genome DEFERRIBACTERES incomplete incomplete Anaerobe, Nitrate reducer, Vibrio-shaped, Motile GEBA, Tree of Life None Marine, Aquatic Oil reservoir model column USA 42.6 Public Gi02322 003044_GCAT 118000 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Campylobacterales Campylobacteraceae Sulfurospirillum Sulfurospirillum deleyianum BACTERIAL Sulfurospirillum deleyianum DSM 6946 ABI, 454 DSM 6946, ATCC 51133 Genome PROTEOBACTERIA-EPSILON incomplete incomplete Sulfur respiration GEBA, Tree of Life None Mud, forest pond in Germany USA Public Gi02323 003045_GCAT 65553 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Bacillales Alicyclobacillaceae Alicyclobacillus Alicyclobacillus acidocaldarius BACTERIAL Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 ABI, 454 DSM 446, ATCC 27009, CIP 106131, IFO 15652, JCM 5260, NBRC 15652, NCIB 11725 Genome FIRMICUTES incomplete incomplete Thermoacidophile GEBA, Tree of Life None 3-4 60 Acid hot spring in the USA USA Public Gi02324 003046_GCAT 1388 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Eubacteriaceae Mogibacterium Mogibacterium timidum BACTERIAL Mogibacterium timidum VPI D10B-17, DSM 3998 ABI, 454 DSM 3998, ATCC 33092 Genome FIRMICUTES incomplete incomplete Anaerobe, Nonsporulating, Rod-shaped GEBA, Tree of Life None Subgingival region of mouth USA Public Gi02325 003047_GCAT 35519 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Acidimicrobiales Acidimicrobiaceae Acidimicrobium Acidimicrobium ferrooxidans BACTERIAL Acidimicrobium ferrooxidans DSM 10331 ABI, 454 DSM 10331 Genome ACTINOBACTERIA incomplete incomplete Iron oxidizer, Autotroph, Thermophile, Acidophile GEBA, Tree of Life None 45 Hot spring run-off in Iceland USA Public Gi02326 003048_GCAT 53635 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Bacillales Alicyclobacillaceae unclassified Bacillus tusciae BACTERIAL Bacillus tusciae T2, DSM 2912 ABI, 454 DSM 2912 Genome FIRMICUTES incomplete incomplete Thermophile, Acidophile, Chemolithoautotroph, Sporulating GEBA, Tree of Life None 50 Solfatara in Italy USA Public Gi02327 003049_GCAT 33943 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium paraputrificum BACTERIAL Clostridium paraputrificum JCM1293 ABI Genome FIRMICUTES incomplete incomplete Anaerobe, Sporulating, Rod-shaped, Motile, Commensal Japan Public Gi02214 002914_GCAT 29363 3000 Univ of Tokyo, RIKEN, Tokushima Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium clostridioforme BACTERIAL Clostridium clostridioforme JCM1291 ABI Genome FIRMICUTES incomplete incomplete Anaerobe, Sporulating, Rod-shaped, Motile, Commensal Japan Public Gi02215 002915_GCAT 1531 3000 Univ of Tokyo, RIKEN, Tokushima Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Firmicutes unclassified unclassified unclassified Clostridium innocuum BACTERIAL Clostridium innocuum JCM1292 ABI JCM1292 Genome FIRMICUTES incomplete incomplete Anaerobe, Sporulating, Rod-shaped, Motile, Commensal Japan Public Gi02216 002916_GCAT 1522 3000 Univ of Tokyo, RIKEN, Tokushima Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Firmicutes Clostridiales Lachnospiraceae Ruminococcus Ruminococcus gnavus BACTERIAL Ruminococcus gnavus TBH11 ABI Genome FIRMICUTES incomplete incomplete Non-Pathogen, Anaerobe, Coccus-shaped, Nonmotile, Nonsporulating,Ccommensal Medical None Host, Human intestinal microflora Japan Public Gi02217 002917_GCAT 33038 40000 Univ of Tokyo, Tokushima Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Firmicutes Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus rhamnosus BACTERIAL Lactobacillus rhamnosus ATCC 53103 ABI ATCC 53103 Genome FIRMICUTES complete incomplete Probiotic, Non-Pathogen, Rod-shaped, Facultative, Nonmotile Food industry, Biotechnological None Host, Intestinal microflora Japan Public Gi02218 002918_GCAT 47715 2300 Univ of Tokyo, Azabu Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Firmicutes Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus casei BACTERIAL Lactobacillus casei casei ATCC 393 ABI ATCC 393 Genome FIRMICUTES incomplete incomplete Probiotic, Rod-shaped, Facultative Food industry, Biotechnological, Lactic acid production None Host, Intestinal microflora Japan Public Gi02219 002919_GCAT 219334 3000 Univ of Tokyo, Azabu Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium acetobutylicum BACTERIAL Clostridium acetobutylicum ABI Genome FIRMICUTES incomplete incomplete Obligate anaerobe, Sporulating, Motile, Chemoorganotroph, Rod-shaped Biotechnological, Acetone production, Butanol production, Ethanol production None Soil Japan Public Gi02220 002920_GCAT 1488 4000 Univ of Tokyo, Kyushu Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Wigglesworthia Wigglesworthia glossinidia BACTERIAL Wigglesworthia morsitans ABI Glossina morsitans Genome PROTEOBACTERIA-GAMMA incomplete incomplete Insect endosymbiont, Endosymbiont Biotechnological, Evolutionary None Host Japan Public Gi02221 002921_GCAT 36868 700 Univ of Tokyo, Yale Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Actinobacteria Actinomycetales Micromonosporaceae Micromonospora Micromonospora olivasterospora BACTERIAL Micromonospora olivasterospora ABI Genome ACTINOBACTERIA incomplete incomplete Aerobe, Sporulating Biotechnological None Soil, Aquatic Japan Public Gi02222 002922_GCAT 1880 8000 Univ of Tokyo, Kitasato Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Spirochaetes Spirochaetales Spirochaetaceae Treponema Treponema phagedenis BACTERIAL Treponema phagedenis ABI Genome SPIROCHAETES incomplete incomplete Japan Public Gi02223 002923_GCAT 162 3500 Univ of Tokyo, Miyazaki Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma agalactiae BACTERIAL Mycoplasma agalactiae VP20-L15/02 ABI Genome FIRMICUTES incomplete incomplete Sphere-shaped, Nonsporulating, Nonmotile, Facultative Medical, Human Pathogen Mastitis, Arthritis, Pneumonia Host India Public Gi02224 002924_GCAT 2110 19953 Univ of Delhi Bacteria Actinobacteria Actinomycetales Beutenbergiaceae Beutenbergia Beutenbergia cavernae BACTERIAL Beutenbergia cavernosa HKI 0122, DSM 12333 ABI, 454 DSM 12333, ATCC BAA-8, IFO 16432, NBRC 16432 Genome ACTINOBACTERIA incomplete incomplete Aerobe, Nonmotile, Nonsporulating, Rod-shaped, L-Lysine containing GEBA, Tree of Life None Soil 28 Cave USA 71 Public Gi02225 002925_GCAT 84757 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Dermacoccaceae Kytococcus Kytococcus sedentarius BACTERIAL Kytococcus sedentarius DSM 20547 ABI DSM 20547, ATCC 14392, CCM 314 Genome ACTINOBACTERIA Draft incomplete Keratin degradation, Coccus-shaped, Nonsporulating, Pathogen GEBA, Biotechnological, Medical, Tree of Life Pitted keratolysis Skin microflora, Marine 30 Seawater, Aquatic USA Public Gi02226 002926_GCAT 478801 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Jonesiaceae Jonesia Jonesia denitrificans BACTERIAL Jonesia denitrificans DSM 20603 ABI, 454 DSM 20603, ATCC 14870, CIP 55134, NCTC 10816 Genome ACTINOBACTERIA Draft incomplete Motile, Nonsporulating, Facultative GEBA, Tree of Life None 57 37 Boiled ox blood USA Public Gi02227 002927_GCAT 43674 20833 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Pseudonocardiaceae Saccharomonospora Saccharomonospora viridis BACTERIAL Saccharomonospora viridis P101, DSM 43017 ABI, 454 DSM 43017, ATCC 15386, CBS 484.63 Genome ACTINOBACTERIA incomplete incomplete Thermophile, Spore-shaped, Pathogen, Sporulating GEBA, Medical, Human Pathogen, Tree of Life Farmer's lung, Hypersensitivity pneumonitis 45 Irish peat USA Public Gi02228 002928_GCAT 1852 20835 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Streptosporangiaceae Streptosporangium Streptosporangium roseum BACTERIAL Streptosporangium roseum NI 9100, DSM 43021 ABI, 454 DSM 43021, ATCC 12428, CBS 313.56, IAM 14294, IFO 3776, JCM 3005 Genome ACTINOBACTERIA incomplete incomplete GEBA, Tree of Life None 28 Vegetable garden soil USA Public Gi02229 002929_GCAT 2001 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Nakamurellaceae Nakamurella Nakamurella multipartita BACTERIAL Nakamurella multipartita Y-104, DSM 44233 ABI, 454 DSM 44233 Genome ACTINOBACTERIA incomplete incomplete GEBA, Tree of Life None Sludge 28 Activated sludge USA 67.5 Public Gi02230 002930_GCAT 53461 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Pseudonocardiaceae Jiangella Jiangella gansuensis BACTERIAL Jiangella gansuensis YIM 002, DSM 44835 ABI, 454 DSM 44835, CCTCC AA 204001, KCTC 19044, YIM 002 Genome ACTINOBACTERIA incomplete incomplete Rod-shaped GEBA, Tree of Life None Soil 28 Desert soil sample in Gansu Province, north-west China USA 70 Public Gi02231 002931_GCAT 281473 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Actinospicaceae Actinospica Actinospica robiniae BACTERIAL Actinospica robiniae GE134769, DSM 44927 ABI, 454 DSM 44927, NRRL B-24432 Genome ACTINOBACTERIA incomplete incomplete Acidophile GEBA, Tree of Life None 5.0 28 Forest soil from Lombardia Italy USA 70.8 Public Gi02232 002932_GCAT 304901 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Catenulisporaceae Catenulispora Catenulispora acidiphila BACTERIAL Catenulispora acidiphila ID139908, DSM 44928 ABI, 454 DSM 44928, NRRL B-24433 Genome ACTINOBACTERIA incomplete incomplete Acidophile GEBA, Tree of Life None Soil 4.3-6.8 Forest soil from Gerenzano italy USA 71.9 Public Gi02233 002933_GCAT 304895 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Coriobacteriales Coriobacteriaceae Cryptobacterium Cryptobacterium curtum BACTERIAL Cryptobacterium curtum 12-3T, DSM 15641 ABI, 454 DSM 15641, ATCC 700683 Genome ACTINOBACTERIA incomplete incomplete Anaerobe, Nonsporulating, Rod-shaped GEBA, Tree of Life, Medical, Human Pathogen Caries, Periodontal infection Host, Human oral microflora 37 Periodontal pocket of an adult patient with periodontal disease in 1995 USA 50 Public Gi02234 002939_GCAT 469378 20739 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Nocardioidaceae Kribbella Kribbella flavida BACTERIAL Kribbella flavida DSM 17836 ABI, 454 DSM 17836, JCM 10339, KCTC 9580, NBRC 14399 Genome ACTINOBACTERIA incomplete incomplete GEBA, Tree of Life None Soil 28 Soil from China USA Public Gi02235 002940_GCAT 182640 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Chloroflexi Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus BACTERIAL Sphaerobacter thermophilus 4ac11, DSM 20745 ABI, 454 DSM 20745, ATCC 49802 Genome CHLOROFLEXI incomplete incomplete Thermophile GEBA, Tree of Life None Sludge 55 Thermophilically treated sewage sludge USA 66 Public Gi02236 002941_GCAT 2057 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Pseudonocardiaceae Thermobispora Thermobispora bispora BACTERIAL Thermobispora bispora R51, DSM 43833 ABI, 454 DSM 43833, ATCC 19993, CBS 139.67, IFO 14880, NBRC 14880 Genome ACTINOBACTERIA Draft incomplete Sporulating, Aerobe, Thermophile, Filament-shaped GEBA, Tree of Life None 55-65 Decaying manure USA Public Gi02237 002942_GCAT 469371 20737 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Thermomonosporaceae Thermomonospora Thermomonospora curvata BACTERIAL Thermomonospora curvata DSM 43183 ABI, 454 DSM 43183, ATCC 19995, CBS 141.67, IAM 14296, IMET 9551, JCM 3096, KCC A-0096, NCIMB 10081 Genome ACTINOBACTERIA incomplete incomplete Cellulose degrader, Thermophile, Rod-shaped, Aerobe, Sporulating GEBA, Biotechnological, Tree of Life None 6 65 Municipal refuse compost samples USA 67 Public Gi02238 002943_GCAT 2020 20825 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Peptococcaceae Desulfotomaculum Desulfotomaculum acetoxidans BACTERIAL Desulfotomaculum acetoxidans 5575, DSM 771 ABI, 454 DSM 771, ATCC 49208, VKM B-1644 Genome FIRMICUTES incomplete incomplete Obligate anaerobe, Motile, Sporulating, Sulfate reducer, Hydrogen sulfide gas release, Rod-shaped, Mesophile GEBA, Tree of Life None Sea water, Aquatic, Mud, Animal intestinal microflora, Soil 7-7.2 37 Piggery waste in Germany USA 38 Public Gi02239 002944_GCAT 58138 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Fusobacteria Fusobacteriales Fusobacteriaceae Leptotrichia Leptotrichia buccalis BACTERIAL Leptotrichia buccalis C-1013-b, DSM 1135 ABI, 454 DSM 1135, ATCC 14201, JCM 12969, NCTC 10249 Genome FUSOBACTERIA incomplete incomplete Anaerobe, Rod-shaped, Pathogen GEBA, Medical, Human Pathogen, Tree of Life Cavitary pneumonia, Septicemia, Endocarditis, Bacteremia Human oral microflora, Blood 37 Supragingival calculus USA 30 Public Gi02240 002945_GCAT 40542 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Acidaminococcaceae Veillonella Veillonella parvula BACTERIAL Veillonella parvula Te3, DSM 2008 ABI, 454 DSM 2008, ATCC 10790, JCM 12972 Genome FIRMICUTES incomplete incomplete Anaerobe, Coccus-shaped, Pathogen, Nonfermentative GEBA, Medical, Human Pathogen, Tree of Life Bacteremia Human intestinal microflora, Human oral microflora, Human vaginal microflora 37 USA Public Gi02241 002946_GCAT 29466 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Coriobacteriales Coriobacteriaceae Eggerthella Eggerthella lenta BACTERIAL Eggerthella lenta VPI 0255, DSM 2243 ABI, 454 DSM 2243 Genome ACTINOBACTERIA incomplete incomplete Anaerobe, Nonsporulating, Pathogen GEBA, Medical, Human Pathogen, Tree of Life Bacteremia Host, Blood 37 Rectal tumor USA Public Gi02242 002947_GCAT 84112 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Bacteroidetes Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter heparinus BACTERIAL Pedobacter heparinus HIM 762-3, DSM 2366 ABI, 454 DSM 2366, ATCC 13125, IFO 12017, NBRC 12017, NCIB 9290 Genome BACTEROIDETES incomplete incomplete GEBA, Tree of Life None Soil 25 - 30 Soil USA Public Gi02243 002948_GCAT 984 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Bacteroidetes Sphingobacteriales unclassified Chitinophaga Chitinophaga pinensis BACTERIAL Chitinophaga pinensis UQM 2034, DSM 2588 ABI, 454 DSM 2588 Genome BACTEROIDETES incomplete incomplete GEBA, Tree of Life None USA 46 Public Gi02244 002949_GCAT 79329 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Archaea Euryarchaeota Halobacteriales Halobacteriaceae Haloterrigena Haloterrigena turkmenica ARCHAEAL Haloterrigena turkmenica DSM 5511 ABI, 454 DSM 5511 Genome EURYARCHAEOTA-HALOBACTERIA incomplete incomplete GEBA, Tree of Life None USA 60 Public Gi02245 0029350_GCAT 62320 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Desulfovibrionales Desulfohalobiaceae Desulfohalobium Desulfohalobium retbaense BACTERIAL Desulfohalobium retbaense DSM 5692 ABI, 454 DSM 5692 Genome PROTEOBACTERIA-DELTA incomplete incomplete Anaerobe, Halophile, Sulfate reducer GEBA, Tree of Life None 35 Saline sediment from Retba Lake in Senegal Africa USA Public Gi02246 002951_GCAT 45663 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Syntrophomonadaceae Thermanaerovibrio Thermanaerovibrio acidaminovorans BACTERIAL Thermanaerovibrio acidaminovorans Su883, DSM 6589 ABI, 454 DSM 6589, ATCC 49978 Genome FIRMICUTES incomplete incomplete Thermophile, Anaerobe GEBA, Tree of Life None Sludge 55 Granular methanogenic sludge USA 57 Public Gi02247 002952_GCAT 81462 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Archaea Euryarchaeota Halobacteriales Halobacteriaceae Halomicrobium Halomicrobium mukohataei ARCHAEAL Halomicrobium mukohataei arg-2, DSM 12286 ABI, 454 DSM 12286, ATCC 700874, JCM 9738, NCIMB 13541 Genome EURYARCHAEOTA-HALOBACTERIA incomplete incomplete Halophile GEBA, Tree of Life None Soil 37 Salinas grandes from Andes highlands in Jujuy Argentina USA 65 Public Gi02248 002953_GCAT 57705 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Archaea Euryarchaeota Halobacteriales Halobacteriaceae Halorhabdus Halorhabdus utahensis ARCHAEAL Halorhabdus utahensis AX-2, DSM 12940 ABI, 454 DSM 12940, JCM 11049 Genome EURYARCHAEOTA-HALOBACTERIA incomplete incomplete Aerobe, Halophile, Red-color, Pleomorphic-shaped GEBA, Tree of Life None Soil 5.5-8.5 17 - 55 Sediment of Great Salt Lake, Utah, USA USA 64 Public Gi02250 002955_GCAT 146826 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Myxococcales Haliangiaceae Haliangium Haliangium ochraceum BACTERIAL Haliangium ochraceum SMP-2, DSM 14365 ABI, 454 DSM 14365, JCM 11303 Genome PROTEOBACTERIA-DELTA incomplete incomplete Yellow-colored, Halophile GEBA, Tree of Life None Sand, Coastal 30 Coastal sands from Japan USA Public Gi02251 002956_GCAT 80816 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Thermoanaerobacteriales Thermoanaerobacteriaceae Thermosediminibacter Thermosediminibacter oceani BACTERIAL Thermosediminibacter oceani JW/IW-1228P, DSM 16646 ABI, 454 DSM 16646 Genome FIRMICUTES incomplete incomplete Anaerobe, Thermophile, Barophile GEBA, Tree of Life None Soil, Deep sea, Sediment 6.3-9.3 52 - 76 Deep sea sediments (252 m below sea level) of Peru Margin collected during Leg 201 of the Ocean Drilling Program USA 46.3 Public Gi02252 002957_GCAT 291990 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Bacteroidetes Bacteroidales Rikenellaceae Alistipes Alistipes finegoldii BACTERIAL Alistipes finegoldii AHN 2437, DSM 17242 ABI, 454 DSM 17242 Genome BACTEROIDETES incomplete incomplete Anaerobe GEBA, Tree of Life None Human appendix tissue USA Public Gi02253 002958_GCAT 214856 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Tsukamurellaceae Tsukamurella Tsukamurella paurometabola BACTERIAL Tsukamurella paurometabola DSM 20162 ABI, 454 DSM 20162 Genome ACTINOBACTERIA incomplete incomplete Hydrogen sulfide producer, Aerobe GEBA, Tree of Life, Biocontrol None Soil USA Public Gi02254 002959_GCAT 2061 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Acidaminococcaceae Megasphaera Megasphaera elsdenii BACTERIAL Megasphaera elsdenii LC1, DSM 20460 ABI, 454 DSM 20460, ATCC 25940, NCIB 8927 Genome FIRMICUTES incomplete incomplete Coccus-shaped, Anaerobe, Pathogen GEBA, Tree of Life, Medical, Human Pathogen Endocarditis Host, Human intestinal microflora, Gastrointestinal tract 37 Rumen of sheep USA 53 Public Gi02255 002960_GCAT 907 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Acidaminococcaceae Selenomonas Selenomonas sputigena BACTERIAL Selenomonas sputigena DSM 20758 ABI, 454 DSM 20758 Genome FIRMICUTES incomplete incomplete Crescent-shaped, Anaerobe, Motile, Pathogen GEBA, Tree of Life, Medical, Human Pathogen Septicemia, Periodontitis Host, Gastrointestinal tract, Respiratory tract 37 Subgingival sulcus USA Public Gi02256 002961_GCAT 69823 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Geodermatophilaceae Geodermatophilus Geodermatophilus obscurus BACTERIAL Geodermatophilus obscurus G-20, DSM 43160 ABI, 454 DSM 43160, ATCC 25078, CBS 237.69, IAM 14282, IFO 13315, JCM 3152 Genome ACTINOBACTERIA incomplete incomplete GEBA, Tree of Life None 28 Soil USA Public Gi02257 002962_GCAT 1861 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Gordoniaceae Gordonia Gordonia bronchialis BACTERIAL Gordonia bronchialis DSM 43247 ABI, 454 DSM 43247, ATCC 25592, JCM 3198 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe GEBA, Medical, Human Pathogen, Tree of Life Bacteremia, Endocarditis Host 28 Sputum of woman with cavitary disease of both upper lungs USA Public Gi02258 002963_GCAT 2054 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Dietziaceae Dietzia Dietzia maris BACTERIAL Dietzia maris IMV 195, DSM 43672 ABI, 454 DSM 43672, ATCC 35013, CIP 104188, IFO 15801, JCM 6166 Genome ACTINOBACTERIA incomplete incomplete Aerobe GEBA, Tree of Life, Medical, Nosocomial Pathogen, Opportunistic Pathogen Hip Prosthesis Infection, Bacteremia Soil, Skin microflora, Host, Gastrointestinal tract 28 Soil USA Public Gi02259 002964_GCAT 37915 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Kineosporiaceae Cryptosporangium Cryptosporangium arvum BACTERIAL Cryptosporangium arvum YU 629-21, DSM 44712 ABI, 454 DSM 44712, HUT 6619, IFO 15965, JCM 10424, NBRC 15965 Genome ACTINOBACTERIA incomplete incomplete GEBA, Tree of Life Soil 28 Cultivated soil from a vegetable field in Japan USA Public Gi02260 002965_GCAT 80871 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria unclassified Ktedobacterales Ktedobacteraceae Ktedobacter Ktedobacter racemifer BACTERIAL Ktedobacter racemifer SOSP1-21, DSM 44963 ABI, 454 DSM 44963 Genome UNCLASSIFIED incomplete incomplete Sporulating, Aerobe, Acidophile GEBA, Tree of Life None Soil 4.8-6.8 Soil sample collected in Gerenzano Italy USA 53.9 Public Gi02261 002966_GCAT 363277 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus sp. B14905 BACTERIAL Bacillus sp. B14905 Genome FIRMICUTES Draft incomplete Sporulating, Aerobe, Sporulating, Rod-shaped Environmental, MMI None Marine, Surface water Surface waters Offshore Gulf of Mexico USA 38 Public Gi01402 000855_GCAT 388400 18949 640612200 4495 4624 NZ_AAXV00000000 NCBI, JCVI J Craig Venter Institute, SDSU Moore Foundation Edwards R http://www.sci.sdsu.edu/~smaloy/CMS/ Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus sp. SG-1 BACTERIAL Bacillus sp. SG-1 Genome FIRMICUTES Draft incomplete Rod-shaped Environmental, MMI None Marine, Sediment San Diego coastal sediments 10m depth USA 42 Public Gi01403 000856_GCAT 161544 19283 640963033 3944 4337 NZ_ABCF00000000 JCVI J Craig Venter Institute, UCSD Moore Foundation Tebo B http://tebolab.ucsd.edu/ Bacteria Proteobacteria Thiotrichales Thiotrichaceae Beggiatoa Beggiatoa alba BACTERIAL Beggiatoa alba B18LD ATCC 33555 Genome PROTEOBACTERIA-GAMMA incomplete Sulfur oxidizer Biotechnological, Ecological, Biochemical None Soil USA Public Gi01563 000857_GCAT 1022 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Thiotrichales Thiotrichaceae Beggiatoa Beggiatoa sp. 'Orange Guaymas' BACTERIAL Beggiatoa sp. Orange Guaymas Genome PROTEOBACTERIA-GAMMA incomplete incomplete Filament-shaped, Sulfur oxidizer, Motile, Facultative Environmental, MMI None Marine, Hydrothermal vent Guaymas Basin hydrothermal vent site USA Public Gi01404 000858_GCAT 391602 19285 JCVI J Craig Venter Institute, Univ of North Carolina at Chapel Hill Moore Foundation Teske A http://www.marine.unc.edu/ Bacteria Proteobacteria Thiotrichales Thiotrichaceae Beggiatoa Beggiatoa sp. PS BACTERIAL Beggiatoa sp. PS Genome PROTEOBACTERIA-GAMMA Draft incomplete Filament-shaped, Sulfur oxidizer, Multicellular Environmental, MMI None Marine, Hydrothermal vent, Sediment Sediments at a depth of 4 meters in the harbor of Eckernford, Germany on the Baltic Sea USA 38 Public Gi01890 000859_GCAT 422289 18683 640963011 7631 6691 NZ_ABBZ00000000 NCBI Center for Genomic Sciences Bacteria Proteobacteria Thiotrichales Thiotrichaceae Beggiatoa Beggiatoa sp. SS BACTERIAL Beggiatoa sp. SS Genome PROTEOBACTERIA-GAMMA Draft incomplete Filament-shaped, Sulfur oxidizer, Multicellular Environmental None Marine, Hydrothermal vent, Sediment Sediments at a depth of 4 meters in the harbor of Eckernford, Germany on the Baltic Sea USA 43 Public Gi02293 003015_GCAT 422288 18685 640963012 1334 1437 NZ_ABBY00000000 NCBI Center for Genomic Sciences Bacteria Proteobacteria Rhizobiales Beijerinckiaceae Beijerinckia Beijerinckia indica BACTERIAL Beijerinckia indica indica ATCC 9039 ATCC 9039 Genome PROTEOBACTERIA-ALPHA incomplete incomplete Aerobe, Chemoorganotroph, Nitrogen fixation, Nonmethanotrophic, Rod-shaped, Nonmotile, Mesophile Biotechnological, Oil industry, Biopolymer production None Soil 20-30 USA Public Gi01551 000860_GCAT 395963 20841 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas sp. BAL3 BACTERIAL Brevundimonas sp BAL3 Genome PROTEOBACTERIA-ALPHA incomplete Rod-shaped, Aerobe Environmental, MMI None Marine 4m depth in the Baltic Sea USA Public Gi01405 000861_GCAT 391600 19287 JCVI J Craig Venter Institute, Univ of Kalmar Moore Foundation Hagstrvm A http://halia.hik.se/start.jsp?page=members/ake%20hagstrom Bacteria Firmicutes Thermoanaerobacteriales Thermoanaerobacteriaceae Carboxydibrachium Carboxydibrachium pacificum BACTERIAL Carboxydibrachium pacificum JM DSM 12653 Genome FIRMICUTES incomplete Thermophile, Anaerobe, Rod-shaped, Nonmotile Environmental, MMI None Marine 70 1500m depth in Okinawa Trough USA Public Gi01406 000862_GCAT 391606 19289 JCVI J Craig Venter Institute Moore Foundation Gonzalez J http://www.irnase.csic.es/ Bacteria Proteobacteria Nautiliales Nautiliaceae Caminibacter Caminibacter mediatlanticus BACTERIAL Caminibacter mediatlanticus TB-2 DSM 16658 Genome PROTEOBACTERIA-EPSILON Draft incomplete Lithotroph, Rod-shaped, Motile, Thermophile Environmental, MMI None Marine 55 2300m depth at Mid-Atlantic Ridge vent USA 27 Public Gi01407 000863_GCAT 391592 19293 640963039 1662 1826 NZ_ABCJ00000000 JCVI J Craig Venter Institute, Rutgers Univ Moore Foundation Vetriani C http://marine.rutgers.edu/deep-seamicrobiology/ Bacteria Bacteroidetes unclassified unclassified Candidatus Cardinium Candidatus Cardinium hertigii BACTERIAL Cardinium hertigii Encarsia hispida Genome BACTEROIDETES incomplete Sulfur oxidizer, Symbiont Biotechnological, Ecological, Evolutionary None Host USA Public Gi01565 000864_GCAT 247481 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Lactobacillales Carnobacteriaceae Carnobacterium Carnobacterium sp. AT7 BACTERIAL Carnobacterium sp. AT7 Genome FIRMICUTES incomplete Piezophile Environmental, MMI None Marine 2500m in Aleutian Trench USA 35 Public Gi01408 000865_GCAT 333990 19299 2442 2388 JCVI J Craig Venter Institute, UCSD Moore Foundation Bartlett D http://sio.ucsd.edu/rab/act_detail.cfm?state=%25%28%5E%23%29T%3C0%20%0A Bacteria Cyanobacteria Chroococcales unclassified Cyanobium Cyanobium sp. PCC 7001 BACTERIAL Synechococcus (Cyanobium) sp PCC 7001 PCC 7001 Genome CYANOBACTERIA incomplete Photoautotroph Environmental, MMI None Marine Intertidal waters off Long Island in 1961 USA Public Gi01409 000866_GCAT 180281 19301 JCVI J Craig Venter Institute, Univ of Massachusetts Moore Foundation Lilly E http://www.umassd.edu/cas/biology/ Bacteria Cyanobacteria Chroococcales unclassified Cyanothece Cyanothece sp. CCY 0110 BACTERIAL Cyanothece sp. CCY 0110 Genome CYANOBACTERIA Draft incomplete Aerobe, Nitrogen fixation, Coccus-shaped Environmental, MMI None Marine 10m depth from coastal waters off Zanzibar USA 36.7 Public Gi01410 000867_GCAT 391612 18951 640612201 5900 6475 NZ_AAXW00000000 NCBI, JCVI J Craig Venter Institute, NIOO Moore Foundation Stal L http://www.nioo.nl/PPAGES/lstal/ Bacteria Cyanobacteria Chroococcales unclassified Cyanothece Cyanothece sp. ATCC 51142 BACTERIAL Cyanothece sp. BH68 ATCC 51142 Genome CYANOBACTERIA incomplete Aerobe, Nitrogen fixation, Photoheterotroph, Coccus-shaped Environmental None Aquatic Intertidal area near Port Aransas TX USA 40 Public Gi01509 000868_GCAT 43989 20319 5500 Washington Univ, Purdue Univ Pakrasi H http://www.sysbio.wustl.edu/pakrasi/people/himadrip.php Bacteria Cyanobacteria Chroococcales unclassified Cyanothece Cyanothece sp. PCC 7424 BACTERIAL Cyanothece sp. PCC 7424 PCC 7424, ATCC 29155 Genome CYANOBACTERIA incomplete Anaerobe, Nitrogen fixation, Autotroph, Nonmotile, Mesophile, Coccus-shaped Environmental None Aquatic Rice fields in india and Taiwan USA 41 Public Gi01595 000869_GCAT 65393 20479 6200 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Cyanobacteria Chroococcales unclassified Cyanothece Cyanothece sp. M7RIII BACTERIAL Cyanothece sp. PCC 7425 PCC 7425, ATCC 29141 Genome CYANOBACTERIA incomplete Anaerobe, Nitrogen fixation, Autotroph, Nonmotile Environmental None Aquatic Rice fields in india and Taiwan USA 48.6 Public Gi01596 000870_GCAT 43988 4600 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Cyanobacteria Chroococcales unclassified Cyanothece Cyanothece sp. M7RIII BACTERIAL Cyanothece sp. PCC 7822 PCC 7822 Genome CYANOBACTERIA incomplete Aerobe, Nitrogen fixation, Nonmotile Environmental None Aquatic Rice fields in india and Taiwan USA Public Gi01597 000871_GCAT 43988 5500 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Cyanobacteria Chroococcales unclassified Cyanothece Cyanothece sp. PCC 8801 BACTERIAL Cyanothece sp. PCC 8801 PCC 8801 Genome CYANOBACTERIA incomplete Aerobe, Nitrogen fixation, Nonmotile, Mesophile, Coccus-shaped Environmental None Aquatic Rice fields in india and Taiwan USA Public Gi01598 000872_GCAT 41431 20503 5500 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Cyanobacteria Chroococcales unclassified Cyanothece Cyanothece sp. M7RIII BACTERIAL Cyanothece sp. PCC 8802 PCC 8802 Genome CYANOBACTERIA incomplete Aerobe, Nitrogen fixation, Nonmotile Environmental None Aquatic Rice fields in india and Taiwan USA Public Gi01599 000873_GCAT 43988 5500 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Cyanobacteria Chroococcales unclassified Cyanothece Cyanothece sp. M7RIII BACTERIAL Cyanothece sp. ATCC 51472 ATCC 51472 Genome CYANOBACTERIA incomplete Aerobe, Nitrogen fixation, Heterotroph, Nonmotile Environmental None Aquatic marine environment near the coast of Texas USA Public Gi01600 000874_GCAT 43988 5500 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Chloroflexi Chloroflexales unclassified Dehalobium Dehalobium chlorocoercia BACTERIAL Dehalobium chlorocoercia DF-1 Genome CHLOROFLEXI incomplete PCB degrading Environmental, MMI None Marine 3m depth from Coast of Charleston South Carolina USA Public Gi01411 000875_GCAT 391609 19303 JCVI J Craig Venter Institute, Univ of Maryland Moore Foundation Sowers K http://www.umbi.umd.edu/~comb/faculty/sowers/sowers.html Bacteria Proteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter sp. SD-21 BACTERIAL Erythrobacter sp SD-21 Genome PROTEOBACTERIA-ALPHA Draft incomplete Rod-shaped, Motile, Aerobe Environmental, MMI None Marine, Sediment 25 - 30 10m depth at San Diego Bay surface sediments USA 63 Public Gi01412 000876_GCAT 161528 19305 640963034 2969 2941 NZ_ABCG00000000 JCVI J Craig Venter Institute, UCSD Moore Foundation Tebo B http://tebolab.ucsd.edu/ Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio shilonii BACTERIAL Vibrio shilonii AK1 ATCC BAA-91, DSM 13774 Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Rod-shaped, Motile, Facultative, Nonsporulating Environmental, Coral Pathogen, MMI Coral reef bleaching Marine 3m depth at Bleached coral Mediterreanean USA 44 Public Gi01413 000877_GCAT 391591 19397 640963038 5698 5360 NZ_ABCH00000000 JCVI J Craig Venter Institute, Tel Aviv Univ Moore Foundation Rosenberg E http://www.tau.ac.il/lifesci/departments/biotech/members/rosenberg/rosenberg.html Bacteria Bacteroidetes Sphingobacteriales Flexibacteraceae Algoriphagus Algoriphagus sp. PR1 BACTERIAL Algoriphagus sp PR1 ABI Genome BACTEROIDETES Draft incomplete Heterotroph, Aerobe, Nonmotile Environmental, MMI None Marine USA 39 Public Gi01414 000878_GCAT 388413 18947 640612202 4776 4215 NZ_AAXU00000000 NCBI, JCVI J Craig Venter Institute, Univ of California, Berkeley Moore Foundation King N http://mcb.berkeley.edu/labs/king/ Bacteria Proteobacteria Rhizobiales Phyllobacteriaceae Hoeflea Hoeflea phototrophica BACTERIAL Hoeflea phototrophica DFL-43 DSM 17068 Genome PROTEOBACTERIA-ALPHA incomplete Aerobe, Rod-shaped, Motile Environmental, MMI None Marine 31 Toxic dinoflagellate Prorocentrum lima USA 60 Public Gi01415 000879_GCAT 411684 19311 4458 4357 JCVI J Craig Venter Institute, GBF Moore Foundation Wagner-Dobler I http://www.gbf.de/kom Bacteria Aquificae Aquificales Aquificaceae Hydrogenivirga Hydrogenivirga sp. 128-5-R1-1 BACTERIAL Hydrogenivirga sp 128-5-R1-1 Genome AQUIFICAE incomplete Thermophile, Hyperthermophile, Hydrogen oxidizer, Sulfur oxidizer, Rod-shaped, Motile, Anaerobe Environmental, MMI None Aquatic, Deep sea, Hydrothermal vent 2200m depth at Lau Basin USA 43 Public Gi01416 000880_GCAT 392423 19313 2275 2646 JCVI J Craig Venter Institute, Portland State Univ Moore Foundation Reysenbach A-L http://www.pdx.edu/profiles/7865/ Bacteria Bacteroidetes Flavobacteriales Flavobacteriaceae Kordia Kordia algicida BACTERIAL Kordia algicida OT-1 Genome BACTEROIDETES incomplete Rod-shaped, Nonmotile, Aerobe Environmental, MMI None Marine 1m depth at Masan Bay in South Sea Korea USA 34 Public Gi01417 000881_GCAT 391587 19315 5019 4514 JCVI J Craig Venter Institute, KORDI Moore Foundation Kim S-J http://www.kordi.re.kr/eng/index.asp Bacteria Proteobacteria Burkholderiales Burkholderiaceae Limnobacter Limnobacter sp. MED513 BACTERIAL Limnobacter sp MED105 ABI Genome PROTEOBACTERIA-BETA Draft incomplete Motile, Rod-shaped Environmental, MMI None Marine, Surface water Surface waters from Eeast Mediterranean Sea (32.81N, 34.69E) USA 52 Public Gi01418 000882_GCAT 131079 19317 640963026 3390 3245 NZ_ABCT00000000 NCBI, JCVI J Craig Venter Institute, Kalmar Univ Moore Foundation Pinhassi J http://halia.hik.se/start.jsp?page=members/jarone%20pinhassi Bacteria Thermotogae Thermotogales Thermotogaceae Marinitoga Marinitoga piezophila BACTERIAL Marinitoga piezophila KA3 DSM 14283, JCM 11233 Genome THERMOTOGAE incomplete Thermophile, Anaerobe, Piezophile, Chemoorganotroph, Sulfur reducer, Rod-shaped, Motile Environmental, MMI None Marine, Deep sea, Hydrothermal vent 2630m depth from East Pacific Rise USA 29 Public Gi01419 000883_GCAT 149715 2000 JCVI J Craig Venter Institute Moore Foundation Bartlett D http://sio.ucsd.edu/rab/act_detail.cfm?state=%25(%5E%23)T%3C0%20%0A Bacteria Proteobacteria Alteromonadales Alteromonadaceae Marinobacter Marinobacter algicola BACTERIAL Marinobacter algicola DG893 DSM 16394, NCIMB 14009 Gymnodinium catenatum Genome PROTEOBACTERIA-GAMMA Draft incomplete Aerobe, Halophile, Hydrocarbon degrading, Rod-shaped, Motile, Nonsporulating, Mesophile, Heterotroph Environmental, MMI None Marine, Host 25 - 30 Yellow Sea in Korea in 1998 USA 57 Public Gi01420 000884_GCAT 236100 19321 640963027 4413 4127 NZ_ABCP00000000 NCBI, JCVI J Craig Venter Institute, SAMS Moore Foundation Green D http://www.sams.ac.uk/index.htm Bacteria Proteobacteria Alteromonadales Alteromonadaceae Marinobacter Marinobacter sp. ELB17 BACTERIAL Marinobacter sp ELB17 Genome PROTEOBACTERIA-GAMMA Draft incomplete Denitrifying, Psychrophile, Rod-shaped, Facultative, Heterotroph Environmental, MMI None Marine 12 - 15 Chemocline waters of a permanently ice-covered lake in the Taylor Valley in Antarctica USA 54 Public Gi01421 000885_GCAT 270374 18955 640612205 4893 4850 NZ_AAXY00000000 NCBI, JCVI J Craig Venter Institute, Princeton Univ Moore Foundation Ward B http://www.eeb.princeton.edu/FACULTY/Ward/Ward.html Bacteria Proteobacteria Thiotrichales Piscirickettsiaceae Methylophaga Methylophaga sp. DMS010 BACTERIAL Methylophaga sp DMS010 Genome PROTEOBACTERIA-GAMMA incomplete Environmental, MMI None Marine Emiliania huxleyi USA Public Gi01422 000886_GCAT 392484 19323 JCVI J Craig Venter Institute, Univ of Warwick Moore Foundation Schaefer H http://www2.warwick.ac.uk/fac/sci/bio/ Bacteria Actinobacteria Actinomycetales Micrococcaceae Micrococcus Micrococcus luteus BACTERIAL Micrococcus luteus Fleming 2665 NCTC 2665, ATCC 15307, DSM 20030, CN 3475 Genome ACTINOBACTERIA incomplete incomplete Metal resistant, Nonsporulating Biotechnological, Environmental, Bioremediation None Soil Originally isolated by Alexander Fleming in 1929 as Micrococcus lysodeikticus USA Public Gi01554 000887_GCAT 465515 20655 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Micrococcaceae Micrococcus Micrococcus luteus BACTERIAL Microcoleus vaginatus PCC 9802 Genome CYANOBACTERIA incomplete Nitrogen fixation Environmental None Desert Soil, Soil USA Public Gi02012 002641_GCAT 1270 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium sp. Spyr1 BACTERIAL Mycobacterium sp. Spyr1 Genome ACTINOBACTERIA incomplete Rod-shaped, Nonmotile, Nonsporulating, Aerobe, PAH-degrading Biotechnological None Soil, Creosote-contaminated soil USA Public Gi02013 002642_GCAT 278137 Joint Genome Institute, Univ of Ioannina DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio furnissii BACTERIAL Vibrio furnissii VFA ATCC 35016 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Curved-shaped, Motile, Facultative, Nonsporulating Medical, Human Pathogen Diarrhea, Cellulitis, Cerebritis Human intestinal microflora, Host Human feces USA Public Gi02014 002643_GCAT 29494 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Cyanobacteria Oscillatoriales unclassified Microcoleus Microcoleus chthonoplastes BACTERIAL Microcoleus chthonoplastes PCC 7420 PCC 7420 Genome CYANOBACTERIA incomplete Filament-shaped, Motile Environmental, MMI None Marine, Salt marsh Salt marsh in Woods Hole Massachusetts USA 45 Public Gi01423 000888_GCAT 118168 19325 8651 7357 JCVI J Craig Venter Institute, Institut Pasteur Moore Foundation Tandeau de Marsac N http://www.pasteur.fr/recherche/banques/PCC/ Bacteria Bacteroidetes Flavobacteriales unclassified unclassified Flavobacteriales bacterium ALC-1 BACTERIAL Flavobacteriales sp ALC-1 Genome BACTEROIDETES incomplete Algicidal, Rod-shaped, Motile, Aerobe Environmental, MMI None Marine Scripps Pier La Jolla CA USA 32 Public Gi01424 000889_GCAT 391603 19307 3825 3445 JCVI J Craig Venter Institute, UCSD Moore Foundation Azam F http://sio.ucsd.edu/rab/act_detail.cfm?state=%25)%3EK-TLL%20%0A Bacteria Verrucomicrobia Verrucomicrobiales unclassified unclassified Verrucomicrobiae bacterium DG1235 BACTERIAL Verrucomicrobiales sp DG1235 Genome VERRUCOMICROBIA incomplete Coccus-shaped, Aerobe Environmental, MMI None Marine Bacterial microflora of the marine dinoflagellate Scrippseilla trochidea USA Public Gi01425 000890_GCAT 382464 19391 JCVI J Craig Venter Institute, SAMS Moore Foundation Hart M http://www.sams.ac.uk/index.htm Bacteria Proteobacteria Campylobacterales unclassified unclassified Campylobacterales bacterium GD 1 BACTERIAL Campylobacterales sp GD 1 Genome PROTEOBACTERIA-EPSILON incomplete Anaerobe, Chemolithoautotroph Environmental, MMI None Marine USA Public Gi01426 000891_GCAT 439483 19295 JCVI J Craig Venter Institute, IOW Moore Foundation Labrenz M http://www.io-warnemuende.de/ Bacteria Proteobacteria unclassified unclassified unclassified marine gamma proteobacterium HTCC2080 BACTERIAL Marine gamma proteobacterium sp HTCC2080 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Environmental, MMI None Marine, Coastal 10m depth from Coastal Pacific Ocean Newport Oregon USA 51.8 Public Gi01427 000892_GCAT 247639 18487 639857036 3576 3185 NZ_AAVV00000000 NCBI, JCVI J Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni S http://www.mcb.oregonstate.edu/giovannoni/ Bacteria Bacteroidetes unclassified unclassified unclassified unclassified BACTERIAL Undescribed sp HTCC2962 Genome BACTEROIDETES incomplete Environmental, MMI None Marine, Coastal 10m depth from Coastal Pacific Ocean Newport Oregon USA Public Gi01428 000893_GCAT JCVI J Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni S http://www.mcb.oregonstate.edu/giovannoni/ Bacteria Proteobacteria Acidithiobacillales Thermithiobacillaceae Thermithiobacillus Thermithiobacillus tepidarius BACTERIAL gamma proteobacterium sp HTCC5015 Genome PROTEOBACTERIA-GAMMA incomplete Environmental, MMI None Aquatic, Surface water, Marine Surface waters from Sargasso sea USA Public Gi01429 000894_GCAT 1236 19309 JCVI J Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni S http://www.mcb.oregonstate.edu/giovannoni/ Bacteria Proteobacteria Oceanospirillales unclassified unclassified Oceanospirillales bacterium 'Osedax endosymbiont' BACTERIAL Oceanospirillales sp Osedax endosymbiont Ocedax Genome PROTEOBACTERIA-GAMMA incomplete Symbiont Environmental, MMI None Host USA Public Gi01430 000895_GCAT 439485 19329 JCVI J Craig Venter Institute, Caltech Moore Foundation Goffredi S http://www.caltech.edu/ Bacteria Proteobacteria Vibrionales unclassified unclassified Vibrionales bacterium SWAT-3 BACTERIAL Vibrionales sp SWAT-3 Genome PROTEOBACTERIA-GAMMA Draft incomplete Nonmotile Environmental, MMI None Marine USA 44 Public Gi01431 000896_GCAT 391574 19399 640963044 5830 5408 NZ_AAZW00000000 JCVI J Craig Venter Institute, UCSD Moore Foundation Azam F http://sio.ucsd.edu/rab/act_detail.cfm?state=%25)%3EK-TLL%20%0A Bacteria Proteobacteria Alteromonadales unclassified unclassified Alteromonadales bacterium TW-7 BACTERIAL Alteromonadales sp TW-7 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Environmental, MMI None Marine USA 39.7 Public Gi01432 000897_GCAT 156578 18465 639857033 4104 3783 NZ_AAVS00000000 NCBI, J Craig Venter Institute J Craig Venter Institute, UCSD Moore Foundation Azam F http://sio.ucsd.edu/rab/act_detail.cfm?state=%25)%3EK-TLL%20%0A Bacteria Proteobacteria Methylophilales unclassified unclassified Methylophilales bacterium HTCC2181 BACTERIAL Methylophilales sp. HTCC2181 (OM43 clade) Genome PROTEOBACTERIA-BETA Draft incomplete Environmental, MMI None Marine 10m from the coastal Pacific ocean at Newport, Oregon USA 37.9 Public Gi01433 000898_GCAT 383631 18317 639857020 1304 1338 NZ_AAUX00000000 NCBI, JCVI J Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni S http://www.mcb.oregonstate.edu/giovannoni/ Bacteria Proteobacteria Rhodobacterales unclassified unclassified Rhodobacterales bacterium HTCC2150 BACTERIAL Rhodobacterales sp HTCC2150 (RCA clade) Genome PROTEOBACTERIA-ALPHA Draft incomplete Environmental, MMI None Marine, Surface water, Coastal Surface waters of Coastal Pacific Ocean Newport Oregon USA 49 Public Gi01434 000899_GCAT 388401 18973 640612203 3582 3667 NZ_AAXZ00000000 NCBI, JCVI J Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni S http://www.mcb.oregonstate.edu/giovannoni/ Bacteria Proteobacteria unclassified unclassified unclassified alpha proteobacterium BAL199 BACTERIAL Undescribed sp BAL199 Genome PROTEOBACTERIA-ALPHA incomplete Environmental, MMI None Marine 3m depth of Baltic proper USA 65 Public Gi01435 000900_GCAT 331869 19281 6101 6128 JCVI J Craig Venter Institute, Kalmar Univ Moore Foundation Hagstrom A http://halia.hik.se/start.jsp?page=members/ake%20hagstrom Bacteria Bacteroidetes Flavobacteriales unclassified unclassified Flavobacteria bacterium BAL38 BACTERIAL Flavobacteria sp BAL38 ABI Genome BACTEROIDETES Draft incomplete Rod-shaped, Motile, Aerobe, Heterotroph Environmental, MMI None Aquatic 4m depth of Baltic proper USA 31 Public Gi01436 000901_GCAT 391598 18953 640612204 2803 2612 NZ_AAXX00000000 NCBI, JCVI J Craig Venter Institute, Kalmar Univ Moore Foundation Hagstrom A http://halia.hik.se/start.jsp?page=members/ake%20hagstrom Bacteria Proteobacteria Burkholderiales Comamonadaceae Rhodoferax Rhodoferax sp. BAL47 BACTERIAL Rhodoferax sp BAL47 Genome PROTEOBACTERIA-BETA incomplete Environmental, MMI None Marine 3m depth of Baltic proper USA Public Gi01437 000902_GCAT 443151 19351 JCVI J Craig Venter Institute, Kalmar Univ Moore Foundation Hagstrom A http://halia.hik.se/start.jsp?page=members/ake%20hagstrom Bacteria Bacteroidetes unclassified unclassified unclassified unidentified eubacterium SCB49 BACTERIAL Undescribed sp SCB49 Genome BACTEROIDETES Draft incomplete Environmental, MMI None Aquatic, Marine 0.5m depth of Southern California Bight USA 34 Public Gi01438 000903_GCAT 50743 19389 640963037 3214 2948 NZ_ABCO00000000 NCBI, JCVI J Craig Venter Institute, Kalmar Univ Moore Foundation Hagstrom A http://halia.hik.se/start.jsp?page=members/ake%20hagstrom Bacteria Bacteroidetes Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter sp. BAL39 BACTERIAL Pedobacter sp BAL39 Genome BACTEROIDETES Draft incomplete Rod-shaped, Nonmotile, Nitrogen fixation, Nonsporulating Environmental, MMI None Marine 4m depth of Baltic proper USA 45 Public Gi01439 000904_GCAT 391596 19337 640963036 5788 5102 NZ_ABCM00000000 JCVI J Craig Venter Institute, Kalmar Univ Moore Foundation Hagstrom A http://halia.hik.se/start.jsp?page=members/ake%20hagstrom Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Oceanibulbus Oceanibulbus indolifex BACTERIAL Oceanibulbus indolifex HEL-45 DSM 14862, NCIMB 13983 Genome PROTEOBACTERIA-ALPHA incomplete Nonmotile, Rod-shaped, Aerobe Environmental, MMI None Marine 25 - 30 3m depth at 3 km off the coast of Helgoland in the North Sea USA 60.1 Public Gi01440 000905_GCAT 391624 19327 4105 4153 JCVI J Craig Venter Institute, GBF Moore Foundation Wagner-Dobler I http://www.gbf.de/kom Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Octadecabacter Octadecabacter antarcticus BACTERIAL Octadecabacter antarcticus 307 Genome PROTEOBACTERIA-ALPHA incomplete Psychrophile Environmental, MMI None Aquatic McMurdo Sound Antarctica USA Public Gi01441 000906_GCAT 391626 19333 JCVI J Craig Venter Institute, ICBM Moore Foundation Brinkhoff T http://www.icbm.de/ Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Octadecabacter Octadecabacter arcticus BACTERIAL Octadecabacter arcticus 238 Genome PROTEOBACTERIA-ALPHA incomplete Psychrophile Environmental, MMI None Aquatic, Marine 350km offshore off Deadhors, Alaska USA Public Gi01442 000907_GCAT 53946 19331 JCVI J Craig Venter Institute, ICBM Moore Foundation Brinkhoff T http://www.icbm.de/ Bacteria Proteobacteria unclassified unclassified unclassified alpha proteobacterium HTCC2255 BACTERIAL Undescribed sp HTCC2255 ABI Genome PROTEOBACTERIA-ALPHA Draft incomplete Environmental, MMI None Marine, Coastal Coastal Pacific Ocean Newport Oregon at a depth of 10 meters USA 38.9 Public Gi01443 000908_GCAT 373154 17677 639857003 4812 4507 NZ_AATR00000000 Oregon State Univ, NCBI, JCVI J Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm Bacteria Proteobacteria Myxococcales Nannocystaceae Plesiocystis Plesiocystis pacifica BACTERIAL Plesiocystis pacifica SIR-1 Genome PROTEOBACTERIA-DELTA Draft incomplete Rod-shaped, Motile, Aerobe Environmental, MMI None Marine 28 - 30 Sandy beach on Iriomote-jima Island Japan USA 71 Public Gi01444 000909_GCAT 391625 19341 640963030 10585 8450 NZ_ABCS00000000 NCBI, JCVI J Craig Venter Institute, Univ of Georgia Moore Foundation Shimkets L http://www.uga.edu/mib/people/shimkets.htm Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus MIT9202 Genome CYANOBACTERIA incomplete Oval-shaped, Nonmotile Environmental, MMI None Marine 79m depth in South Pacific Ocean USA Public Gi01445 000910_GCAT 93058 19343 1700 JCVI J Craig Venter Institute, MIT Moore Foundation Chisholm P http://web.mit.edu/chisholm/www/ Archaea Crenarchaeota Desulfurococcales Pyrodictiaceae Pyrodictium Pyrodictium abyssi ARCHAEAL Pyrodictium abyssi DSM 6158 DSM 6158 Genome CRENARCHAEOTA-THERMOPROTEI incomplete Heterotroph, Hyperthermophile, Thermophile, Disc-shaped, Anaerobe Environmental, MMI None Marine, Deep sea, Hydrothermal vent 97 - 105 Deep-sea hydrothermal vents USA Public Gi01446 000911_GCAT 391605 19347 JCVI J Craig Venter Institute, Univ of Massachusetts Amherst Moore Foundation Holden J http://www.bio.umass.edu/micro/faculty/holden.html Archaea Euryarchaeota unclassified unclassified Aciduliprofundum Aciduliprofundum boonei ARCHAEAL Aciduliprofundum boonei T469 Genome EURYARCHAEOTA incomplete Coccus-shaped, Facultative, Chemolithoautotroph, Hyperthermophile, Thermophile, Motile, Acidophile Environmental, MMI None Marine, Deep sea, Hydrothermal vent 70 Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge depth 3650m USA 53 Public Gi01447 000912_GCAT 379547 19277 JCVI J Craig Venter Institute, Portland State Univ Moore Foundation Reysenbach AL http://alrlab.pdx.edu/ Bacteria Cyanobacteria Nostocales Nostocaceae Richelia Richelia sp. SC01 BACTERIAL Richelia sp. Genome CYANOBACTERIA incomplete Environmental, MMI None Aquatic USA Public Gi01448 000913_GCAT 98443 JCVI J Craig Venter Institute, UCSC Moore Foundation Zehr J http://oceansci.ucsc.edu/faculty/zehr.html Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Roseobacter Roseobacter sp. AzwK-3b BACTERIAL Roseobacter sp. AzwK-3b Genome PROTEOBACTERIA-ALPHA Draft incomplete Photosynthetic, Rod-shaped, Motile, Aerobe, Phototroph Biotechnological, Environmental, MMI None Marine Elkhorn Slough an estuary of Monterey Bay USA 62 Public Gi01449 000914_GCAT 351016 19361 640963029 4209 4102 NZ_ABCR00000000 JCVI J Craig Venter Institute, Stanford Univ Moore Foundation Frances C http://pangea.stanford.edu/~caf/ Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Roseobacter Roseobacter sp. NP30 BACTERIAL Roseobacter sp. GAI101 Genome PROTEOBACTERIA-ALPHA incomplete Photosynthetic, Rod-shaped, Motile, Aerobe, Phototroph Biotechnological, Environmental, MMI None Marine, Coastal Coastal seawater collected off Georgia in December 1997 USA Public Gi01450 000915_GCAT 2433 JCVI J Craig Venter Institute, SDSU Moore Foundation Edwards R http://www.sci.sdsu.edu/~smaloy/CMS/ Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Phaeobacter Phaeobacter gallaeciensis BACTERIAL Roseobacter gallaeciensis 2.1 Pecten maximus Genome PROTEOBACTERIA-ALPHA incomplete Photosynthetic, Rod-shaped, Motile, Aerobe, Phototroph, Symbiont Biotechnological, Environmental, MMI None Marine Surface of the marine algae Ulva lactuca in Australia USA 60 Public Gi01451 000916_GCAT 383629 19353 639255501 4500 3948 JCVI J Craig Venter Institute, Univ of New South Wales Moore Foundation Kjelleberg http://www.babs.unsw.edu.au/staff_directory/kjellebergs.html Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Phaeobacter Phaeobacter gallaeciensis BACTERIAL Roseobacter (Phaeobacter) gallaeciensis BS107 Genome PROTEOBACTERIA-ALPHA incomplete Photosynthetic, Rod-shaped, Motile, Aerobe, Phototroph Biotechnological, Environmental, MMI None Marine Seawater from the scallop Pecten maximus in Spain USA 60 Public Gi01686 000917_GCAT 391619 19355 640062400 4231 4059 JCVI J Craig Venter Institute Moore Foundation Kukor J http://aesop.rutgers.edu/~kukorlab/jerry.htm Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Roseobacter Roseobacter litoralis BACTERIAL Roseobacter litoralis Och 149 ATCC 49566, CIP 104265, DSM 6996 Genome PROTEOBACTERIA-ALPHA incomplete Photosynthetic, Rod-shaped, Motile, Aerobe, Phototroph Biotechnological, Environmental, MMI None Marine Seaweed USA Public Gi01452 000918_GCAT 391595 19357 4678 4746 JCVI J Craig Venter Institute, ICBM Moore Foundation Brinkhoff T http://www.icbm.de/ Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Roseobacter Roseobacter sp. SIO BACTERIAL Roseobacter sp. SIO67 Genome PROTEOBACTERIA-ALPHA incomplete Photosynthetic, Rod-shaped, Motile, Aerobe, Phototroph Biotechnological, Environmental, MMI None Marine Seawater off the coast of Georgia USA Public Gi01453 000919_GCAT 105179 19359 JCVI J Craig Venter Institute, SDSU Moore Foundation Edwards R http://www.sci.sdsu.edu/~smaloy/CMS/ Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Roseobacter Roseobacter sp. CCS2 BACTERIAL Roseobacter sp. CCS2 Genome PROTEOBACTERIA-ALPHA Draft incomplete Photosynthetic, Rod-shaped, Motile, Aerobe, Phototroph Biotechnological, Environmental, MMI None Marine, Coastal Coastal Pacific Ocean USA 55.5 Public Gi01454 000920_GCAT 391593 18995 640612221 3497 3660 NZ_AAYB00000000 NCBI, JCVI J Craig Venter Institute, Univ of Georgia Moore Foundation Moran MA http://www.marsci.uga.edu/directory/mmoran.htm Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Roseobacter Roseobacter sp. SK209-2-6 BACTERIAL Roseobacter sp. SK209-2-6 ABI Genome PROTEOBACTERIA-ALPHA Draft incomplete Photosynthetic, Rod-shaped, Motile, Aerobe, Phototroph, Denitrifying Biotechnological, Environmental, MMI None Marine 2500m depth in the Arabian Sea USA 57 Public Gi01455 000921_GCAT 388739 18997 640612220 4600 4537 NZ_AAYC00000000 NCBI, JCVI J Craig Venter Institute, Princeton Univ Moore Foundation Ward B http://www.eeb.princeton.edu/FACULTY/Ward/Ward.html Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Roseovarius Roseovarius aestuarii BACTERIAL Roseovarius sp DSS-1 Genome PROTEOBACTERIA-ALPHA incomplete Aerobe, Heterotroph, Mesophile Environmental, MMI None Marine, Coastal Coastal seawater of Georgia USA Public Gi01456 000922_GCAT 74030 4000 JCVI J Craig Venter Institute, Univ of Georgia Moore Foundation Moran MA http://www.marsci.uga.edu/directory/mmoran.htm Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Roseovarius Roseovarius sp. TM1035 BACTERIAL Roseovarius sp. TM1035 Pfiesteria piscicida Genome PROTEOBACTERIA-ALPHA Draft incomplete Aerobe, Heterotroph Environmental, MMI None Marine Pfiesteria piscicida USA 61 Public Gi01457 000923_GCAT 391613 19363 640963035 4209 4102 NZ_ABCL00000000 JCVI J Craig Venter Institute, Univ of Maryland Moore Foundation Belas R http://www.umbi.umd.edu/~belas/ Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Sagittula Sagittula stellata BACTERIAL Sagittula stellata E-37 ATCC 700073 Genome PROTEOBACTERIA-ALPHA Draft incomplete Aerobe, Rod-shaped, Nonsporulating, Nonmotile Environmental, MMI None Marine, Coastal Coastal Georgia USA 65 Public Gi01458 000924_GCAT 388399 18971 640612219 5261 5067 NZ_AAYA00000000 NCBI, JCVI J Craig Venter Institute, Univ of Georgia Moore Foundation Moran MA http://www.marsci.uga.edu/directory/mmoran.htm Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Labrenzia Labrenzia alexandrii BACTERIAL Stappia (Labrenzia) alexandrii DFL-11 DSM 17067, NCIMB 14079 Alexandrium ostenfeldii Genome PROTEOBACTERIA-ALPHA incomplete Motile, Aerobe Environmental, MMI None Marine 6-9.2 26 Alexandrium ostenfeldii USA Public Gi01459 000925_GCAT 244592 19367 5461 5284 JCVI J Craig Venter Institute, GBF Moore Foundation Wagner-Dobler I http://www.gbf.de/kom Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Labrenzia Labrenzia aggregata BACTERIAL Stappia (Labrenzia) aggregata IAM12614 ABI ATCC 25650 Genome PROTEOBACTERIA-ALPHA Draft incomplete Rod-shaped, Motile Environmental, MMI None Marine Damariscotta River in Maine USA 59.4 Public Gi01460 000926_GCAT 384765 18315 639857019 6561 6314 NZ_AAUW00000000 NCBI, JCVI J Craig Venter Institute, Univ of Maine Moore Foundation King G http://www.umaine.edu/meem/faculty/king.htm Bacteria Proteobacteria Xanthomonadales Xanthomonadaceae Stenotrophomonas Stenotrophomonas sp. SKA14 BACTERIAL Stenotrophomonas sp. SKA14 Genome PROTEOBACTERIA-GAMMA incomplete Nitrogen fixation, Aerobe, Nonfermentative Environmental, Biotechnological, MMI None Marine 4m depth in Baltic Sea USA Public Gi01461 000927_GCAT 391601 19369 JCVI J Craig Venter Institute, Univ of Kalmar Moore Foundation Hagstrom A http://halia.hik.se/start.jsp?page=members/ake%20hagstrom Bacteria Cyanobacteria Chroococcales unclassified Synechococcus Synechococcus sp. PCC 7335 BACTERIAL Synechococcus sp. PCC 7335 Genome CYANOBACTERIA incomplete Anaerobe, Nitrogen fixation, Photoautotroph Environmental, MMI None Marine USA 48 Public Gi01462 000928_GCAT 91464 19377 5964 5403 JCVI J Craig Venter Institute, Institut Pasteur Moore Foundation Tandeau de Marsac N http://www.pasteur.fr/recherche/banques/PCC/ Bacteria Cyanobacteria Chroococcales unclassified Synechococcus Synechococcus sp. M11.1 BACTERIAL Synechococcus sp. M11.1 Genome CYANOBACTERIA incomplete Photoautotroph Environmental, MMI None Marine, Deep sea 275m depth in the Gulf of Mexico USA Public Gi01463 000929_GCAT 351026 19371 JCVI J Craig Venter Institute, Univ of Oregon Moore Foundation Wood M http://evolution.uoregon.edu/mwood.htm Bacteria Cyanobacteria Chroococcales unclassified Synechococcus Synechococcus sp. M16.17 BACTERIAL Synechococcus sp. M16.17 Genome CYANOBACTERIA incomplete Photoautotroph Environmental, MMI None Marine 275m depth in the Gulf of Mexico USA Public Gi01464 000930_GCAT 351025 19373 2500 JCVI J Craig Venter Institute, Univ of Oregon Moore Foundation Wood M http://evolution.uoregon.edu/mwood.htm Archaea Euryarchaeota Thermococcales Thermococcaceae Thermococcus Thermococcus sp. AM4 ARCHAEAL Thermococcus sp. AM4 Genome EURYARCHAEOTA-THERMOCOCCI incomplete Anaerobe, Hyperthermophile, Thermophile Environmental, MMI None Marine, Deep sea, Hydrothermal vent 2600m depth in the East Pacific Rise USA Public Gi01465 000931_GCAT 246969 19381 JCVI J Craig Venter Institute, UCSD Moore Foundation Bartlett D http://sio.ucsd.edu/rab/act_detail.cfm?state=%25(%5E%23)T%3C0%20%0A Archaea Euryarchaeota Thermococcales Thermococcaceae Thermococcus Thermococcus barophilus ARCHAEAL Thermococcus barophilus MP DSMZ 11836 Genome EURYARCHAEOTA-THERMOCOCCI incomplete Barophile, Hyperthermophile, Thermophile, Coccus-shaped Environmental, MMI None Marine, Deep sea, Hydrothermal vent Deep-sea hydrothermal vent USA Public Gi01466 000932_GCAT 391623 19379 JCVI J Craig Venter Institute, Prokaria Moore Foundation Marteinsson VT http://www.prokaria.com/default.asp?cat_id=1 Archaea Euryarchaeota Thermococcales Thermococcaceae Thermococcus Thermococcus onnurineus ARCHAEAL Thermococcus onnurineus NA1 KCTC 10859, JCM 13517 Genome EURYARCHAEOTA-THERMOCOCCI incomplete incomplete Hyperthermophile, Motile, Anaerobe, Nonsporulating, Coccus-shaped, Heterotroph Biotechnological None Aquatic 8.5 80 Hydrothermal vent sediment at a depth of 1650 meters Korea 52 Public Gi02367 003095_GCAT 342948 20773 KORDI Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio fischeri BACTERIAL Vibrio fischeri MJ11 Genome PROTEOBACTERIA-GAMMA incomplete Symbiont, Rod-shaped Environmental, MMI None Aquatic Squid light organ in Japan USA 38 Public Gi01467 000933_GCAT 668 19393 4454 4061 JCVI J Craig Venter Institute, Univ of Georgia Moore Foundation Stabb E http://www.uga.edu/mib/people/stabb.htm Bacteria Chlamydiae Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila pneumoniae BACTERIAL Chlamydia pneumoniae Genome CHLAMYDIAE complete Pathogen, Obligate intracellular parasite, Nonmotile, Rod-shaped Medical, Human Pathogen Pharyngitis, Bronchitis, Pneumonia, Respiratory infection, Heart disease, Asthma, Multiple sclerosis Host France Proprietary Gi00137 000935_GCAT 83558 1230 1069 GENSET Bacteria Chlamydiae Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila pneumoniae BACTERIAL Chlamydia pneumoniae TW-183 Genome CHLAMYDIAE complete Pathogen, Obligate intracellular parasite, Nonmotile, Rod-shaped Medical, Human Pathogen Respiratory infection, Pharyngitis, Bronchitis, Pneumonia Host Child's conjunctiva during a trachoma vaccine trial in Taiwan in 1965 Germany 40 Proprietary Gi00138 000936_GCAT 182082 Gene Alliance, GPC-AG Byk Gulden Bacteria Chlamydiae Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis L2 Genome CHLAMYDIAE complete Pathogen, Obligate intracellular parasite, Nonmotile, Rod-shaped Medical, Human Pathogen, Animal Pathogen Pharyngitis, Bronchitis, Pneumonia, Respiratory infection Host France Proprietary Gi00140 000937_GCAT 813 1038 997 GENSET Bacteria Chlamydiae Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis L2. Genome CHLAMYDIAE incomplete Pathogen, Obligate intracellular parasite, Nonmotile, Rod-shaped Medical, Human Pathogen, Animal Pathogen Respiratory infection, Pharyngitis, Bronchitis, Pneumonia Host International Public Gi00818 000938_GCAT 813 1100 Sanger Institute Sanger Institute, Univ of California, Berkeley Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Chlamydiae Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis A Genome CHLAMYDIAE complete Pathogen, Obligate intracellular parasite, Nonmotile, Rod-shaped Medical, Human Pathogen, Animal Pathogen Respiratory infection, Pharyngitis, Bronchitis, Pneumonia Host United Kingdom Public Gi01854 000939_GCAT 813 1052 Sanger Institute Sanger Institute Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Chlamydiae Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis B Genome CHLAMYDIAE incomplete Pathogen, Obligate intracellular parasite, Nonmotile, Rod-shaped Medical, Human Pathogen, Animal Pathogen Respiratory infection, Pharyngitis, Bronchitis, Pneumonia Host United Kingdom Public Gi01855 000940_GCAT 813 1052 Sanger Institute Sanger Institute Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Chlamydiae Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis Jali B Genome CHLAMYDIAE complete Pathogen, Obligate intracellular parasite, Nonmotile, Rod-shaped Medical, Human Pathogen, Animal Pathogen Pharyngitis, Bronchitis, Pneumonia Host United Kingdom 40 Public Gi00139 000941_GCAT 813 1200 Sanger Institute Sanger Institute, Univ of Southampton Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Chlamydiae Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis E11023 Genome CHLAMYDIAE complete Pathogen, Obligate intracellular parasite, Nonmotile, Rod-shaped Medical, Human Pathogen, Animal Pathogen Pharyngitis, Bronchitis, Pneumonia Host USA Public Gi01510 000942_GCAT 813 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Chlamydiae Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis Ds2923 Genome CHLAMYDIAE complete Pathogen, Obligate intracellular parasite, Nonmotile, Rod-shaped Medical, Human Pathogen, Animal Pathogen Pharyngitis, Bronchitis, Pneumonia Host USA Public Gi01511 000943_GCAT 813 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Chlamydiae Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis G9301 Genome CHLAMYDIAE complete Pathogen, Obligate intracellular parasite, Nonmotile, Rod-shaped Medical, Human Pathogen, Animal Pathogen Pharyngitis, Bronchitis, Pneumonia Host USA Public Gi01512 000944_GCAT 813 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Chlamydiae Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis G9768 Genome CHLAMYDIAE complete Pathogen, Obligate intracellular parasite, Nonmotile, Rod-shaped Medical, Human Pathogen, Animal Pathogen Pharyngitis, Bronchitis, Pneumonia Host USA Public Gi01513 000945_GCAT 813 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Chlamydiae Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila psittaci BACTERIAL Chlamydophila psittaci 6BC Genome CHLAMYDIAE incomplete Pathogen Medical, Human Pathogen, Animal Pathogen Respiratory infection Host USA Public Gi00143 000946_GCAT 331636 12519 TIGR Bacteria Chlamydiae Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila pneumoniae BACTERIAL Chlamydophila pneumoniae LPCoLN Genome CHLAMYDIAE incomplete Pathogen, Rod-shaped Medical, Human Pathogen, Animal Pathogen Respiratory infection Host USA Public Gi01649 000947_GCAT 406984 17947 TIGR Bacteria Bacteroidetes Flavobacteriales unclassified Candidatus Sulcia Candidatus Sulcia muelleri BACTERIAL Sulcia muelleri Hc ABI Blue-Green Sharpshooter Genome BACTEROIDETES Draft incomplete Symbiont Agricultural None Host USA 24 Public Gi01469 000948_GCAT 374675 16198 638341057 146 179 NZ_AANL00000000 NCBI TIGR Bacteria Chlamydiae Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila pecorum BACTERIAL Chlamydophila pecorum E58 Genome CHLAMYDIAE incomplete Pathogen, Rod-shaped Medical, Human Pathogen, Animal Pathogen Respiratory infection, Pharyngitis, Bronchitis, Pneumonia Host USA Public Gi01010 000949_GCAT 331635 TIGR Bacteria Chlorobi Chlorobiales Chlorobiaceae Chlorobium Chlorobium ferrooxidans BACTERIAL Chlorobium ferrooxidans DSM 13031 ABI 9x DSM 13031 Genome CHLOROBI Draft incomplete Photosynthetic, Nonmotile, Photoautotroph, Green sulfur, Rod-shaped, Anaerobe Biotechnological, Hydrogen production, Energy production None Aquatic 22 - 25 USA 50 Public Gi01610 000950_GCAT 377431 16644 638341060 2538 2158 NZ_AASE00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Chlorobi Chlorobiales Chlorobiaceae Chlorobium Chlorobium limicola BACTERIAL Chlorobium limicola DSM 245 DSM 245 Genome CHLOROBI Draft incomplete Photosynthetic, Nonmotile, Photoautotroph, Green sulfur, Rod-shaped, Anaerobe Biotechnological, Hydrogen production, Energy production None Aquatic, Hot spring Gilroy Hot spring USA 51.3 Public Gi00145 000951_GCAT 290315 12606 638341061 2747 2435 NZ_AAHJ00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Chlorobi Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeobacteroides BACTERIAL Chlorobium phaeobacteroides BS1 ABI Genome CHLOROBI Draft incomplete Photosynthetic, Nitrogen fixation, Green sulfur, Rod-shaped, Nonmotile, Nonsporulating Biotechnological, Energy production, Hydrogen production None Marine From the chemocline of the Black Sea USA 45.5 Public Gi00147 000952_GCAT 331678 12608 638341062 4444 3791 NZ_AAIC00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Chloroflexi Chloroflexales Chloroflexaceae Chloroflexus Chloroflexus aurantiacus BACTERIAL Chloroflexus aurantiacus J-10-fl ABI Genome CHLOROFLEXI Draft incomplete Green non-sulfur, Photosynthetic, Carbon dioxide fixation, Motile, Anaerobe, Phototroph, Filament-shaped, Thermophile Biotechnological, Energy production, Evolutionary, Hydrogen production None Aquatic, Hot spring 35 - 70 Hot springs USA 56.6 Public Gi00150 000954_GCAT 324602 59 638341064 5193 3937 NZ_AAAH00000000 NCBI, Joint Genome Institute Joint Genome Institute, Univ of Puget Sound DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Chloroflexi Chloroflexales Chloroflexaceae Chloroflexus Chloroflexus aggregans BACTERIAL Chloroflexus aggregans DSM 9485 ABI, 454 10x DSM 9485 Genome CHLOROFLEXI Draft incomplete Green non-sulfur, Facultative, Motile, Filament-shaped, Photosynthetic, Thermophile Biotechnological None Aquatic, Hot spring Hot spring in Japan USA 56.4 Public Gi00930 000955_GCAT 326427 16708 639857011 4596 3658 NZ_AAUI00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Chlorobi Chlorobiales Chlorobiaceae Chloroherpeton Chloroherpeton thalassium BACTERIAL Chloroherpeton thalassium Genome CHLOROBI incomplete Photosynthetic, Motile, Anaerobe, Photolithotroph, Rod-shaped, Green sulfur Biotechnological, Energy production None Aquatic North East coast of the USA USA 47 Public Gi00734 000956_GCAT 100716 13218 3000 Entrez Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Chloroflexi Chloroflexales Chloroflexaceae Chloronema Chloronema giganteum BACTERIAL Chloronema giganteum UdG9001 Genome CHLOROFLEXI incomplete Filament-shaped, Photosynthetic, Facultative, Motile, Photoautotroph Biotechnological None Aquatic Little Long Lake in Wisconsin USA Public Gi00931 000957_GCAT 166589 5000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Chloroflexi unclassified unclassified Candidatus Chlorothrix Candidatus Chlorothrix halophila BACTERIAL Chlorothrix halophila Draft-Genome CHLOROFLEXI incomplete complete Filament-shaped, Photosynthetic, Facultative, Halophile, Phototroph, Motile Biotechnological None Aquatic Salt evaporation pond microbial mat USA Public Gi00932 000958_GCAT 257501 13622 5000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Chrysiogenetes Chrysiogenales Chrysiogenaceae Chrysiogenes Chrysiogenes arsenatis BACTERIAL Chrysiogenes arsenatis DSM 11915 DSM 11915 Genome CHRYSIOGENETES complete Arsenate-respiring, Rod-shaped, Motile, Anaerobe Evolutionary, Biotechnological, Wastewater treatment None Gold mine wastewater Gold mine wastewater from the Ballarat Goldfields in Australia in 1996 USA 49 Public Gi00740 000959_GCAT 118005 12520 Entrez TIGR NSF Bacteria Verrucomicrobia unclassified unclassified Chthoniobacter Chthoniobacter flavus BACTERIAL Chthoniobacter flavus Ellin514 Genome VERRUCOMICROBIA incomplete Aerobe, Heterotroph, Rod-shaped, Nonmotile, Mesophile Evolutionary None Soil 25-30 Rye grass and clover pasture in Victoria, Australia USA 60.7 Public Gi01011 000960_GCAT 191863 20839 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Verrucomicrobia unclassified unclassified Chthoniobacter Chthoniobacter flavus BACTERIAL Chthoniobacter flavus Ellin428 Genome VERRUCOMICROBIA incomplete Aerobe, Heterotroph, Rod-shaped, Nonmotile Evolutionary None Soil USA 60.7 Public Gi01672 000961_GCAT 191863 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Citrobacter Citrobacter rodentium BACTERIAL Citrobacter rodentium ICC168 Genome PROTEOBACTERIA-GAMMA incomplete Facultative, Motile, Pathogen, Rod-shaped Medical, Animal Pathogen Murine colonic hyperplasia United Kingdom 50 Public Gi00153 000963_GCAT 67825 13422 5000 Sanger Institute Sanger Institute, Imperial College Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Actinobacteria Actinomycetales Microbacteriaceae Clavibacter Clavibacter michiganensis BACTERIAL Clavibacter (Corynebacterium) michiganensis sepedonicus ATCC 33113 ATCC 33113 Genome ACTINOBACTERIA complete Pathogen, Rod-shaped, Nonmotile, Aerobe Agricultural, Plant Pathogen Tuber rot, Ring rot Host International 70 Public Gi00155 000965_GCAT 31964 184 2500 Sanger Institute Sanger Institute USDA Ishimaru CA Carol.Ishimaru@Colostate.edu Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium difficile BACTERIAL Clostridium difficile QCD-32g58 ABI Genome FIRMICUTES Draft incomplete Pathogen, Obligate anaerobe, Sporulating, Motile, Chemoorganotroph, Rod-shaped Medical, Human Pathogen, Animal Pathogen, Swine Pathogen Diarrhea, Colitis, Peritonitis Host Patient with CDAD from Quebec Canada USA 28 Public Gi01611 000969_GCAT 367459 16328 638341066 3834 3829 NZ_AAML00000000 NCBI Washington Univ Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium difficile BACTERIAL Clostridium difficile QCD-66c26 ABI, 454 Genome FIRMICUTES Draft incomplete Pathogen, Obligate anaerobe, Sporulating, Motile, Chemoorganotroph, Rod-shaped Medical, Human Pathogen, Animal Pathogen, Swine Pathogen Diarrhea, Colitis, Peritonitis Host USA Public Gi02274 002993_GCAT 455631 20093 4053 NZ_ABFD00000000 NCBI McGill Univ Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium difficile BACTERIAL Clostridium difficile QCD-37x79, NAP1a/001 ABI, 454 Genome FIRMICUTES incomplete incomplete Pathogen, Obligate anaerobe, Sporulating, Motile, Chemoorganotroph, Rod-shaped, Mesophile Medical, Human Pathogen, Animal Pathogen, Swine Pathogen Diarrhea, Colitis, Peritonitis Host 29.1 London, Ontario in 2005 Canada Public Gi02528 003254_GCAT 1496 21109 McGill Univ Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium difficile BACTERIAL Clostridium difficile QCD-76w55, NAP1 ABI, 454 Genome FIRMICUTES incomplete incomplete Pathogen, Obligate anaerobe, Sporulating, Motile, Chemoorganotroph, Rod-shaped, Mesophile Medical, Human Pathogen, Animal Pathogen, Swine Pathogen Diarrhea, Colitis, Peritonitis Host Minneapolis, Minnesota in 1998 Canada Public Gi02529 003255_GCAT 1496 21105 McGill Univ Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium difficile BACTERIAL Clostridium difficile QCD-97b34, NAP1b/006 ABI, 454 Genome FIRMICUTES incomplete incomplete Pathogen, Obligate anaerobe, Sporulating, Motile, Chemoorganotroph, Rod-shaped, Mesophile Medical, Human Pathogen, Animal Pathogen, Swine Pathogen Diarrhea, Colitis, Peritonitis Host St. John's, Newfoundland in 2004 Canada Public Gi02530 003256_GCAT 1496 21107 McGill Univ Bacteria Proteobacteria Alteromonadales Alteromonadaceae Glaciecola Glaciecola sp. HTCC2999 BACTERIAL Glaciecola sp. HTCC 2999 ABI HTCC2999 Genome PROTEOBACTERIA-GAMMA incomplete incomplete Rod-shaped, Nonsporulating, Motile, Aerobe, Psychrophile Biotechnological, Environmental None Aquatic USA Public Gi02275 002994_GCAT 89404 20121 J Craig Venter Institute Bacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae HK1212 ABI Genome PROTEOBACTERIA-GAMMA incomplete incomplete Pathogen, Rod-shaped, Facultative Medical, Human Pathogen Brazilian purpuric fever Host, Human upper respiratory tract USA Public Gi02276 002995_GCAT 456482 20115 J Craig Venter Institute Bacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus parasuis BACTERIAL Haemophilus parasuis 29775 ABI Genome PROTEOBACTERIA-GAMMA incomplete incomplete Pathogen, Rod-shaped, Facultative Medical,Animal Pathogen, Swine Pathogen Glasser's disease Host, Swine upper respiratory tract USA Public Gi02277 002996_GCAT 456298 20127 Iowa State Univ Bacteria Firmicutes Bacillales Bacillaceae Lysinibacillus Lysinibacillus sphaericus BACTERIAL Lysinibacillus sphaericus C3-41 ABI Genome FIRMICUTES incomplete incomplete Rod-shaped, Sporulating, Motile, Aerobe Agricultural, Insect Pathogen Larvicidal toxin Host, Mosquito Mosquito breeding site in China China Public Gi02278 002997_GCAT 444177 19619 Beijing Genomics Institute Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus D30 ABI Genome FIRMICUTES incomplete incomplete Coccus-shaped, Nonsporulating, Motile, Facultative, Pathogen Medical, Human Pathogen Toxic-shock syndrome, Staphylococcal scarlet fever, Nosocomial infection Host 30 - 37 Nasal cavity of a healthy human USA Public Gi02279 002998_GCAT 455227 19993 Univ of Central Florida Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus 930918-3 ABI Genome FIRMICUTES incomplete incomplete Coccus-shaped, Nonsporulating, Motile, Facultative, Non-Pathogen Medical None Host 30 - 37 USA Public Gi02335 003057_GCAT 452948 20007 Univ of Central Florida Bacteria Firmicutes Bacillales Staphylococcaceae Macrococcus Macrococcus caseolyticus BACTERIAL Macrococcus caseolyticus JCSC5402 ABI Genome FIRMICUTES incomplete incomplete Coccus-shaped, Nonsporulating, Nonmotile, Facultative None Host Japan Public Gi02280 002999_GCAT 458233 20209 Juntendo Univ Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium ljungdahlii BACTERIAL Clostridium ljungdahlii PETC ATCC 55383 Genome FIRMICUTES incomplete Anaerobe, Motile, Sporulating, Rod-shaped, Ethanol production, Acetogen Biotechnological None Soil Chicken yard waste Germany 22 Public Gi00159 000970_GCAT 1538 13492 4600 Competence Network, Goettingen Genomics Laboratory Celanese Chemicals Gottschalk G ggottsc@gwdg.de Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium sp. BC1 BACTERIAL Clostridium sp. BC1 ATCC 53464 Genome FIRMICUTES incomplete Anaerobe, Nitrogen fixation, Sporulating, Rod-shaped, Motile, Sporulating, Non-Pathogen Biotechnological, Environmental None Soil Coal-cleaning residues USA 27 Public Gi00163 000971_GCAT 86416 80 3815 BNL, Entrez Brookhaven Natl Lab DOE, OBER Bacteria Proteobacteria Burkholderiales Oxalobacteraceae Collimonas Collimonas fungivorans BACTERIAL Collimonas fungivorans Genome PROTEOBACTERIA-BETA incomplete Aerobe, Rod-shaped, Motile, Chitin degradation Biotechnological None Soil Dune soil in the Netherlands Netherlands Public Gi01069 000974_GCAT 158899 16085 NIOO-KNAW Bacteria Proteobacteria Alteromonadales Colwelliaceae Colwellia Colwellia sp. MT41 BACTERIAL Colwellia sp MT41 Genome PROTEOBACTERIA-GAMMA incomplete Piezophile, Facultative, Motile Biotechnological None Aquatic, Deep sea Depth of 10,476 m in the Mariana Trench USA 38 Public Gi00733 000975_GCAT 58049 TIGR NSF Methe BA bmethe@tigr.org Bacteria Firmicutes Thermoanaerobacteriales Thermoanaerobacteriaceae Coprothermobacter Coprothermobacter proteolyticus BACTERIAL Coprothermobacter proteolyticus DSM 5265 DSM 5265 Genome FIRMICUTES complete Thermophile, Acetogen, Rod-shaped, Anaerobe, Nonmotile Evolutionary None Thermophilic digestor USA 45 Public Gi00739 000976_GCAT 309798 12522 Entrez TIGR NSF Bacteria Actinobacteria Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium glutamicum BACTERIAL Corynebacterium glutamicum Genome ACTINOBACTERIA complete Rod-shaped, Nonmotile, Facultative, Nonsporulating, Fast growing Biotechnological, Glutamate production, Amino acids production, Food industry None Normal microflora, Soil USA Proprietary Gi00172 000977_GCAT 1718 Integrated Genomics Inc BASF contact contact@integratedgenomics.com Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium proteoclasticum BACTERIAL Clostridium proteoclasticum B316 ATCC 51982 Genome FIRMICUTES complete Motile, Rod-shaped, Proteolytic Biotechnological, Agricultural None Bovine rumen, Host Rumen contents of New Zealand cattle grazing fresh forage New Zealand 28 Public Gi01238 000978_GCAT 43305 AgResearch Bacteria Actinobacteria Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium pseudotuberculosis BACTERIAL Corynebacterium pseudotuberculosis 1002 ovis Genome ACTINOBACTERIA incomplete Intracellular, Parasite, Facultative, Pathogen Medical, Animal Pathogen Caseous lymphadenitis Host Goat caseous granulomas found in Bahia state Brazil Public Gi00934 000979_GCAT 1719 Univ Federal de Minas Gerais, RGMG Univ Federal de Minas Gerais FAPEMIG Azevedo V vasco@mono.icb.ufmg.br Bacteria Actinobacteria Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium thermoaminogenes BACTERIAL Corynebacterium thermoaminogenes FERM9246 Genome ACTINOBACTERIA incomplete Thermophile, Non-Pathogen Biotechnological None Soil Japan Proprietary Gi00174 000980_GCAT 161484 NITE, Ajinomoto Co., Inc Gojobori T http://wdcm.nig.ac.jp/gojobori.html Bacteria Actinobacteria Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium urealyticum BACTERIAL Corynebacterium urealyticum DSM7111 DSM7111 Genome ACTINOBACTERIA incomplete Pathogen, Lipophilic Medical, Human Pathogen Urinary tract infection, Cystitis, Pyelitis Host Germany Public Gi01607 000981_GCAT 43771 2300 Bielefeld Univ Bielefeld Univ Tauch A Andreas.Tauch@genetik.uni-bielefeld.de Bacteria Actinobacteria Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium urealyticum BACTERIAL Corynebacterium urealyticum DSM7109 DSM7109 Genome ACTINOBACTERIA incomplete Pathogen, Lipophilic Medical, Human Pathogen Urinary tract infection, Cystitis, Pyelitis Host Germany 64 Public Gi01606 000982_GCAT 43771 2300 Bielefeld Univ Bielefeld Univ Tauch A Andreas.Tauch@genetik.uni-bielefeld.de Bacteria Proteobacteria Legionellales Coxiellaceae Coxiella Coxiella burnetii BACTERIAL Coxiella burnetii Dugway 5J108-111 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Facultative, Motile Medical, Human Pathogen, Biothreat, Animal Pathogen Q fever, Food poisoning Host Rodents in Utah USA Public Gi01952 002578_GCAT 434922 19141 RML-NIAID, TIGR NIH-NIAID Bacteria Proteobacteria Legionellales Coxiellaceae Coxiella Coxiella burnetii BACTERIAL Coxiella burnetii G Q212 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Facultative, Motile Medical, Human Pathogen, Biothreat, Animal Pathogen Q fever, Food poisoning Host Rodents in Utah USA Public Gi01953 002579_GCAT 434923 19137 RML-NIAID, TIGR NIH-NIAID Bacteria Proteobacteria Legionellales Coxiellaceae Coxiella Coxiella burnetii BACTERIAL Coxiella burnetii K Q154 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Facultative, Motile Medical, Human Pathogen, Biothreat, Animal Pathogen Q fever, Food poisoning Host Rodents in Utah USA Public Gi01954 002580_GCAT 434924 19139 RML-NIAID, TIGR NIH-NIAID Bacteria Proteobacteria Legionellales Coxiellaceae Coxiella Coxiella burnetii BACTERIAL Coxiella burnetii MSU Goat Q177 Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Facultative, Motile Medical, Human Pathogen, Animal Pathogen, Biothreat Q fever, Food poisoning Host USA 47 Public Gi01270 000984_GCAT 360116 17747 640963018 2100 2354 NZ_AAUP00000000 TIGR TIGR NIH-NIAID Bacteria Proteobacteria Legionellales Coxiellaceae Coxiella Coxiella burnetii BACTERIAL Coxiella burnetii RSA 331 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Facultative, Motile Medical, Human Pathogen Food poisoning Host, Blood Blood of an infected patient in northern Italy in 1945 USA 42 Public Gi01294 000985_GCAT 360115 16791 638341072 2086 2065 NZ_AAQO00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Legionellales Coxiellaceae Coxiella Coxiella burnetii BACTERIAL Coxiella burnetii RSA 334 Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Facultative, Motile Medical, Human Pathogen, Animal Pathogen Food poisoning, Q fever Host USA 47 Public Gi01271 000986_GCAT 777 18975 2100 NZ_AAYJ00000000 TIGR TIGR NIH-NIAID Bacteria Proteobacteria Methylococcales Crenotrichaceae Crenothrix Crenothrix polyspora BACTERIAL Crenothrix polyspora Metagenome PROTEOBACTERIA-GAMMA incomplete Methane oxidation, Aerobe, Filament-shaped Environmental, Ecological None Soil, Aquatic Biofilm from drinking water system USA Public Gi01569 000987_GCAT 360316 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Bacteroidetes Flavobacteriales Flavobacteriaceae Croceibacter Croceibacter atlanticus BACTERIAL Croceibacter atlanticus HTCC2559 ABI HTCC2559 Genome BACTEROIDETES Draft incomplete Aerobe, Chemoheterotroph, Nonmotile, Rod-shaped Environmental, MMI None Marine Sargasso Sea at a depth of 10m USA 33.9 Public Gi00838 000988_GCAT 216432 13570 638341073 2954 2719 NZ_AAMP00000000 NCBI, Oregon State Univ, JCVI J Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium butyricum BACTERIAL Clostridium butyricum 5521 ABI Genome BACTEROIDETES Draft incomplete Rod-shaped, Sporulating, Motile, Anaerobe, Pathogen Medical, Human Pathogen Botulism 37 Case of botulism USA Public Gi02249 002954_GCAT 447214 20023 ABDT01000000 JCVI J Craig Venter Institute NIH-NIAID Bacteria Cyanobacteria Chroococcales unclassified Crocosphaera Crocosphaera watsonii BACTERIAL Crocosphaera watsonii WH 8501 ABI Draft-Genome CYANOBACTERIA Draft complete Diazotroph, Nitrogen fixation, Photosynthetic Environmental None Aquatic USA 37.1 Public Gi00176 000989_GCAT 165597 10651 638341074 6238 5958 NZ_AADV00000000 NCBI, Joint Genome Institute Joint Genome Institute, Woods Hole Oceanographic Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Cyanobacteria Chroococcales unclassified Crocosphaera Crocosphaera watsonii BACTERIAL Crocosphaera watsonii WH0002 Genome CYANOBACTERIA incomplete Nitrogen fixation, Photosynthetic Environmental, MMI None Marine Subtropical Pacific Ocean waters at 50 meters depth USA Public Gi01148 000990_GCAT 344748 15661 JCVI J Craig Venter Institute Moore Foundation Waterbury J http://www.whoi.edu/science/B/people/ewebb/Waterburycv.htm Bacteria Chloroflexi unclassified unclassified Dehalococcoides Dehalococcoides sp. VS BACTERIAL Dehalococcoides sp VS Draft-Genome CHLOROFLEXI Draft complete Anaerobe, Dechlorinates Tetrachloroethene, Motile, Mesophile, Chemolithotroph Environmental, Ecological, Bioremediation, Biotechnological None Aquatic, Groundwater Texas USA Public Gi00938 000992_GCAT 311424 18811 1500 ABFQ01000000 Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria unclassified unclassified unclassified delta proteobacterium MLMS-1 BACTERIAL delta proteobacterium sp MLMS-1 ABI Genome PROTEOBACTERIA-DELTA Draft incomplete Chemoautotroph, Motile, Rod-shaped, Anaerobe, Chemolithotroph Environmental, Ecological, Bioremediation None Aquatic Mono Lake California USA Public Gi01532 000993_GCAT 262489 15764 638341245 6058 5379 NZ_AAQF00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Deinococcus-Thermus Deinococcales Deinococcaceae Deinococcus Deinococcus deserti BACTERIAL Deinococcus deserti VCD115 DSM 17065, LMG 22923 Genome THERMI incomplete Radiation resistant, Coccus-shaped, Aerobe Biotechnological, Environmental None Sahara Desert in Morocco and Tunisia France 59.8 Public Gi01514 000994_GCAT 310783 16691 3800 Genoscope Genoscope Barbe V vbarbe@genoscope.cns.fr Bacteria Cyanobacteria Pleurocapsales unclassified Dermocarpa Dermocarpa sp. 0006 BACTERIAL Dermocarpa sp 0006 Genome CYANOBACTERIA incomplete Motile Environmental, MMI None Marine USA Public Gi00839 000995_GCAT 344743 13550 5000 JCVI J Craig Venter Institute, UCSC Moore Foundation Zehr JP http://oceansci.ucsc.edu/faculty/zehr.html Bacteria Cyanobacteria Nostocales Rivulariaceae Calothrix Calothrix sp. SC01 BACTERIAL Calothrix sp. SC01 Genome CYANOBACTERIA incomplete Motile, Aerobe Environmental, MMI None Marine spines of the diatom Chaetoceros taken at a depth of 5 meters at the ALOHA station in the north Pacific Ocean USA Public Gi01687 000996_GCAT 439482 19291 5000 JCVI J Craig Venter Institute, UCSC Moore Foundation Zehr JP http://oceansci.ucsc.edu/faculty/zehr.html Bacteria Firmicutes Clostridiales Peptococcaceae Desulfitobacterium Desulfitobacterium hafniense BACTERIAL Desulfitobacterium hafniense DCB-2 ABI Draft-Genome FIRMICUTES Draft complete Anaerobe, Degrades pollutants, Rod-shaped, Motile, Sporulating Bioremediation, Environmental None Sludge 37 - 38 Municipal sludge USA 47.5 Public Gi00192 000997_GCAT 272564 205 638341076 4600 4712 NZ_AAAW00000000 NCBI, Joint Genome Institute Joint Genome Institute, Michigan State Univ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Desulfobacterales Desulfobacteraceae Desulfobacterium Desulfobacterium autotrophicum BACTERIAL Desulfobacterium autotrophicum HRM2 Genome PROTEOBACTERIA-DELTA incomplete Anaerobe, Lithoautotroph, Sulfate reducer, Rod-shaped, Motile Biotechnological None Aquatic 20 - 30 Marine sediment in the Mediterranean sea near Italy Germany Public Gi00194 000998_GCAT 177437 109 5500 Goettingen Genomics Laboratory, REGX Goettingen Genomics Laboratory, REGX BMBF Amann R ramann@mpi-bremen.de Bacteria Firmicutes Thermolithobacterales Thermolithobacteraceae Thermolithobacter Thermolithobacter ferrireducens BACTERIAL Desulforudis audaxviator MP104C Metagenome FIRMICUTES complete incomplete Motile, Rod-shaped, Sulfate reducer, Nitrogen fixation, Sporulating, Anaerobe Environmental None Deep subsurface 60 Gold and Platinum mines of South Africa USA 61 Public Gi01880 001000_GCAT 1239 2350 2204 Joint Genome Institute DOE, NASA Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio magneticus BACTERIAL Desulfovibrio magneticus RS-1 ATCC 700980 Genome PROTEOBACTERIA-DELTA incomplete Sulfate reducer, Magnetite production, Anaerobe, Rod-shaped, Motile Biotechnological None Aquatic Sediment from the Kameno River in Japan Japan Public Gi00729 001001_GCAT 184917 15681 638341181 NITE NITE Fujita N fujita-nobuyuki@nite.go.jp Bacteria Proteobacteria Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas acetoxidans BACTERIAL Desulfuromonas acetoxidans DSM 684 ABI 25x Genome PROTEOBACTERIA-DELTA Draft incomplete Anaerobe, Motile, Syntrophic, Rod-shaped, Supports electricity generation Bioremediation, Environmental None Aquatic USA 51.8 Public Gi00197 001002_GCAT 281689 12551 638341078 3528 3234 NZ_AAEW00000000 NCBI, Joint Genome Institute Joint Genome Institute, Univ of Massachusetts Amherst DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Dictyoglomi Dictyoglomales Dictyoglomaceae Dictyoglomus Dictyoglomus thermophilum BACTERIAL Dictyoglomus thermophilum H-6-12 DSM 3960 Genome DICTYOGLOMI incomplete Thermophile, Chemoorganotroph, Anaerobe, Rod-shaped, Nonmotile, Nonsporulating Evolutionary None Aquatic, Hot spring Slightly alkaline Tsuetae Hot spring in Kumamoto Prefecture in Japan USA 29 Public Gi00738 001004_GCAT 309799 12523 TIGR NSF Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Edwardsiella Edwardsiella ictaluri BACTERIAL Edwardsiella ictaluri 93-146 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Motile, Rod-shaped, Facultative Medical, Fish Pathogen Enteric septicemia, Septicemia Host, Aquatic Enteric septicemia of catfish outbreak in a commercial catfish pond in Louisiana USA 53 Public Gi00212 001005_GCAT 67780 13468 Microgen Univ of Oklahoma, Mississippi State Univ USDA Lawrence M lawrence@cvm.msstate.edu Bacteria Proteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia chaffeensis BACTERIAL Ehrlichia chaffeensis Sapulpa ABI Genome PROTEOBACTERIA-ALPHA Draft incomplete Pathogen, Obligate intracellular parasite Medical, Human Pathogen Ehrlichiosis, Human monocytic ehrlichiosis Host, Monocytes, Macrophage Patient in Oklahoma, US, with severe ehrlichiosis USA 30 Public Gi00215 001006_GCAT 332415 13916 638341079 1005 805 NZ_AAIF00000000 NCBI, Joint Genome Institute Joint Genome Institute, Univ of Texas DOE Richardson P microbes@cuba.jgi-psf.org Bacteria unclassified unclassified unclassified unclassified unclassified BACTERIAL Endomicrobium trichonymphae Termite flagellates Metagenome ENDOMICROBIA incomplete Symbiont Evolutionary None Host USA Public Gi01566 001007_GCAT Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria candidate division TG1 unclassified unclassified unclassified uncultured Endomicrobia bacterium BACTERIAL Elusimicrobium minutum Pei191 Protists Genome ENDOMICROBIA incomplete Anaerobe, Symbiont Evolutionary None Host USA Public Gi01567 001008_GCAT 74152 19701 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae unclassified primary endosymbiont of Sitophilus zeamais BACTERIAL Endosymbiont of Sitophilus zeamais Sitophilus zeamais Genome PROTEOBACTERIA-GAMMA incomplete Endosymbiont None Host USA Public Gi01239 001009_GCAT 2341 Univ of Utah NSF Dale C http://www.biology.utah.edu/faculty2.php?inum=110 Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae unclassified primary endosymbiont of Sitophilus oryzae BACTERIAL Endosymbiont of Sitophilus oryzae Sitophilus oryzae Genome PROTEOBACTERIA-GAMMA incomplete Endosymbiont USA Public Gi01240 001010_GCAT 2342 Univ of Utah NSF Dale C http://www.biology.utah.edu/faculty2.php?inum=110 Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Enterobacter Enterobacter cloacae BACTERIAL Enterobacter cloacae Genome PROTEOBACTERIA-GAMMA complete Facultative, Rod-shaped, Pathogen, Motile Medical, Human Pathogen Nosocomial infection Host USA Proprietary Gi00225 001011_GCAT 550 13379 PathoGenome-TM Genome Therapeutics Bacteria Firmicutes Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis Genome FIRMICUTES complete Pathogen, Nonmotile, Anaerobe, Halotolerant Medical, Human Pathogen Nosocomial infection, Endocarditis Wastewater, Gastrointestinal tract USA Proprietary Gi00226 001012_GCAT 1351 PathoGenome-TM Genome Therapeutics Bacteria Firmicutes Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium BACTERIAL Enterococcus faecium ATCC 35667 Genome FIRMICUTES incomplete complete Pathogen, Facultative, Nonmotile, Chemoorganotroph, Halotolerant Medical, Human Pathogen Urinary infection, Bacteremia, Endocarditis Soil, Aquatic, Wastewater USA 37 Proprietary Gi00228 001013_GCAT 1352 2092 2000 Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Bacteria Firmicutes Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium BACTERIAL Enterococcus faecium DO ABI Draft-Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Nonmotile, Chemoorganotroph, Halotolerant Medical, Human Pathogen Urinary infection, Bacteremia, Endocarditis Host, Wastewater USA 37 Public Gi00229 001014_GCAT 333849 71 638341080 2980 2869 NZ_AAAK00000000 NCBI, Joint Genome Institute, ORNL, BCM-HGSC Joint Genome Institute, BCM-HGSC DOE, NIH-NIAID Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium BACTERIAL Enterococcus faecium Genome FIRMICUTES complete Pathogen, Facultative, Nonmotile, Chemoorganotroph, Halotolerant Medical, Human Pathogen Wastewater USA 37 Proprietary Gi00227 001015_GCAT 1352 PathoGenome-TM Genome Therapeutics Bacteria Firmicutes Clostridiales unclassified Epulopiscium Epulopiscium sp. 'N.t. morphotype B' BACTERIAL Epulopiscium sp. N.t. morphotype B Fish Genome FIRMICUTES Draft incomplete Heterotroph, Symbiont, Anaerobe, Sporulating, Rod-shaped Biotechnological None Host USA 38 Public Gi00231 001016_GCAT 420336 20181 2686 NZ_ABEQ00000000 NCBI J Craig Venter Institute NSF Nelson KE kenelson@tigr.org Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Erwinia Erwinia amylovora BACTERIAL Erwinia (Micrococcus) amylovora Ea273 Genome PROTEOBACTERIA-GAMMA complete Facultative, Motile, Pathogen, Rod-shaped, Nonsporulating Agricultural, Plant Pathogen Fire blight Host USA Public Gi00233 001017_GCAT 552 12610 3700 Sanger Institute Cornell Univ, Univ of Wisconsin, Sanger Institute USDA Beer SV http://ppathw3.cals.cornell.edu/ppath/facultyinfo/Beer.html Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Dickeya Erwinia chrysanthemi BACTERIAL Erwinia (Pectobacterium) chrysanthemi 3937 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Facultative, Motile, Rod-shaped Agricultural, Plant Pathogen Soft rot Host 27 - 30 USA Public Gi00235 001018_GCAT 198628 30 3700 Univ of Wisconsin Univ of Wisconsin, TIGR USDA Perna N perna@svm.vetmed.wisc.edu Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Erwinia Erwinia tasmaniensis BACTERIAL Erwinia tasmaniensis Et1/99 DSM 17950 Genome PROTEOBACTERIA-GAMMA incomplete Facultative, Motile, Rod-shaped, Non-Pathogen, Epiphytic Agricultural None Germany 53 Public Gi01608 001019_GCAT 338565 3900 Max Planck Institute Max Planck Society Kube M kube@molgen.mpg.de Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Erwinia Erwinia billingiae BACTERIAL Erwinia billingiae Eb661 Genome PROTEOBACTERIA-GAMMA incomplete Facultative, Motile, Rod-shaped, Epiphytic Agricultural None Germany 55 Public Gi01609 001020_GCAT 182337 4100 Max Planck Institute Max Planck Society Kube M kube@molgen.mpg.de Bacteria Proteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter sp. NAP1 BACTERIAL Erythrobacter sp NAP1 ABI Genome PROTEOBACTERIA-ALPHA Draft incomplete Aerobe, Phototroph, Nonsporulating, Motile, Rod-shaped Environmental, MMI None Surface water, Marine 32 Surface waters of the Northwest Atlantic Ocean USA 61 Public Gi00841 001021_GCAT 237727 13512 638341081 3264 3177 NZ_AAMW00000000 NCBI, JCVI J Craig Venter Institute, Rutgers Univ Moore Foundation Falkowski PG http://marine.rutgers.edu/faculty_pfalkowski.html Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia blattae BACTERIAL Escherichia blattae DSM 4481 Genome PROTEOBACTERIA-GAMMA incomplete Facultative, Motile, Non-Pathogen None Host, Hind-gut of cockroaches Germany Public Gi00236 001022_GCAT 563 4140 Competence Network, Goettingen Genomics Laboratory Gottschalk G ggottsc@gwdg.de Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O8 IAI 1 O8 Genome PROTEOBACTERIA-GAMMA incomplete Non-Pathogen, Facultative, Motile, Rod-shaped, Nonsporulating Medical None Host, Human intestinal microflora Faeces of a healthy man in the 1980s in France France Public Gi01070 001023_GCAT 562 Genoscope Genoscope Barbe V vbarbe@genoscope.cns.fr Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli 55989 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Facultative, Motile, Rod-shaped, Nonsporulating Medical, Human Pathogen Diarrhea Host, Human intestinal microflora France Public Gi01071 001024_GCAT 562 Genoscope Genoscope Barbe V vbarbe@genoscope.cns.fr Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli BL21(DE3) Genome PROTEOBACTERIA-GAMMA incomplete incomplete Non-Pathogen, Facultative, Motile, Rod-shaped, Nonsporulating, Mesophile Biotechnological, Recombinant protein expression None Host, Human intestinal microflora 37 Derivative of E. coli strain B Korea Public Gi02360 003088_GCAT 469008 20713 KRIBB Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O7:K1 IAI 39 O7:K1 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Motile, Facultative, Nonsporulating, Rod-shaped Medical, Human Pathogen Urinary infection Host, Human intestinal microflora Urine of a patient with urinary tract infection in France in the 1980s France Public Gi01072 001025_GCAT 562 Genoscope Genoscope Barbe V vbarbe@genoscope.cns.fr Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O17:K52:H18 UMN026 O17:K52:H18 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Highly Virulent, Facultative, Motile, Rod-shaped, Nonsporulating Medical, Human Pathogen Urinary infection Host, Human intestinal microflora Woman with uncomplicated acute cystitis in Minnesota in 1999 France Public Gi01073 001026_GCAT 562 Genoscope Genoscope Barbe V vbarbe@genoscope.cns.fr Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O81 ED1a O81 Genome PROTEOBACTERIA-GAMMA incomplete Non-Pathogen, Facultative, Motile, Rod-shaped, Nonsporulating Medical None Host, Human intestinal microflora Faeces of a healthy man in 2000 in France France Public Gi01074 001027_GCAT 562 Genoscope Genoscope Barbe V vbarbe@genoscope.cns.fr Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O45:K1 S88 O45:K1 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Highly Virulent, Facultative, Motile, Rod-shaped, Nonsporulating Medical, Human Pathogen Meningitis Host, Human intestinal microflora Cerebro-spinal fluid of a late onset neonatal meningitis case in France in 1999 France Public Gi01075 001028_GCAT 562 Genoscope Genoscope Barbe V vbarbe@genoscope.cns.fr Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia fergusonii BACTERIAL Escherichia fergusonii UMN026 ATCC 35469 Genome PROTEOBACTERIA-GAMMA incomplete Non-Pathogen Medical None Host France Public Gi01076 001029_GCAT 564 Genoscope Genoscope Barbe V vbarbe@genoscope.cns.fr Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O144 53638 O144 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Rod-shaped, Motile, Nonsporulating, Facultative, Nonsporulating Medical, Human Pathogen Dysenteria Host, Human intestinal microflora 37 USA 51 Public Gi01134 001031_GCAT 344610 15639 638341083 5289 4783 NZ_AAKB00000000 NCBI TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli E22 (EPEC) ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Rod-shaped, Motile, Nonsporulating, Facultative, Enteropathogenic Medical, Human Pathogen Diarrhea Host, Human intestinal microflora USA 50 Public Gi01135 001032_GCAT 340185 15577 638341087 5516 4788 NZ_AAJV00000000 NCBI TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O139:H28 F11 (ETEC) O139:H28 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Rod-shaped, Motile, Facultative, Enterotoxigenic, Nonsporulating Medical, Human Pathogen Human cystitis, Diarrhea Host, Human intestinal microflora Woman with a case of cystitis with bacteriuria USA 50 Public Gi01136 001033_GCAT 340197 15576 638341089 5206 4467 NZ_AAJU00000000 NCBI TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O148:H28 B7A (CS6:LT+:ST+)(ETEC) O148:H28 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Rod-shaped, Facultative, Motile, Enterotoxigenic, Nonsporulating Medical, Human Pathogen Diarrhea Host American soldier who had diarrhea in Viet Nam USA 50 Public Gi01137 001034_GCAT 340184 15572 638341085 5202 4637 NZ_AAJT00000000 NCBI TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O111:H9 E110019 (EPEC) O111:H9 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Rod-shaped, Motile, Facultative, Enteropathogenic, Nonsporulating Medical, Human Pathogen Diarrhea Host, Human intestinal microflora Oubreak of diarrhea in 1987 in Finland USA 50 Public Gi01138 001035_GCAT 340186 15578 638341086 5384 4746 NZ_AAJW00000000 NCBI TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O111:NM B171 (EPEC2) O111:NM ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Rod-shaped, Facultative, Motile, Enteropathogenic, Nonsporulating Medical, Human Pathogen Diarrhea Host, Human intestinal microflora USA 50 Public Gi01139 001036_GCAT 344601 15630 638341084 5299 4792 1 1 NZ_AAJX00000000 NCBI TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli H8 Genome PROTEOBACTERIA-GAMMA incomplete Rod-shaped, Motile, Facultative, Pathogen, Nonsporulating Medical, Human Pathogen Diarrhea Host, Human intestinal microflora USA Public Gi00941 001038_GCAT 562 TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli 101-1 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Enteroaggregative, Pathogen, Facultative, Motile, Rod-shaped, Nonsporulating Medical, Human Pathogen Diarrhea Host, Human intestinal microflora Outbreak in Japan USA Public Gi01272 001039_GCAT 358709 16193 638341082 4880 4238 NZ_AAMK00000000 NCBI TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli Nissle 1917 Genome PROTEOBACTERIA-GAMMA incomplete Facultative, Motile, Non-Pathogen, Rod-shaped, Nonsporulating Medical None Host, Human intestinal microflora Germany Public Gi00842 001040_GCAT 316435 Bielefeld Univ Bielefeld Univ BMBF Puhler A puehler@genetik.uni-bielefeld.de Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O26:H11 O26:H11 Genome PROTEOBACTERIA-GAMMA incomplete Rod-shaped, Motile, Facultative, Pathogen, Nonsporulating Medical, Human Pathogen Diarrhea Host, Human intestinal microflora Japan 40 Public Gi00828 001041_GCAT 244319 Kitasato Univ Kitasato Univ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O111:H O111:H Genome PROTEOBACTERIA-GAMMA incomplete Facultative, Motile, Pathogen, Rod-shaped, Nonsporulating Medical, Human Pathogen Diarrhea Host, Human intestinal microflora Japan 40 Public Gi00829 001042_GCAT 168927 Kitasato Univ Kitasato Univ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O103:H2 O103:H2 Genome PROTEOBACTERIA-GAMMA incomplete Facultative, Motile, Pathogen, Rod-shaped, Nonsporulating Medical, Human Pathogen Diarrhea Host, Human intestinal microflora Japan 40 Public Gi00830 001043_GCAT 376725 Kitasato Univ Kitasato Univ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli 789 AC/1 Genome PROTEOBACTERIA-GAMMA complete Facultative, Motile, Pathogen, Rod-shaped, Nonsporulating Medical, Human Pathogen Diarrhea Host, Human intestinal microflora Germany Public Gi01515 001044_GCAT 562 4800 Goettingen Genomics Laboratory, Univ of Wuerzburg, Tel Aviv Univ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli DH10B ABI 25.6x Genome PROTEOBACTERIA-GAMMA incomplete incomplete Facultative, Motile, Pathogen, Rod-shaped, Nonsporulating Medical, Human Pathogen Diarrhea Host, Human intestinal microflora USA Public Gi00237 001045_GCAT 316385 20079 4640 BCM-HGSC BCM-HGSC NIH-NHGRI Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli 042 (EAEC) Genome PROTEOBACTERIA-GAMMA complete Facultative, Motile, Pathogen, Rod-shaped, Nonsporulating Medical, Human Pathogen Diarrhea Host, Human intestinal microflora European Consortium Public Gi00238 001046_GCAT 216592 340 Sanger Institute Sanger Institute, Institut Pasteur Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli E2348/69 (EPEC) Genome PROTEOBACTERIA-GAMMA incomplete Facultative, Motile, Pathogen, Rod-shaped, Enteropathogenic, Nonsporulating Medical, Human Pathogen Diarrhea Host, Human intestinal microflora European Consortium Public Gi00239 001047_GCAT 216593 341 Sanger Institute Sanger Institute, Institut Pasteur Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli H10407 (ETEC) Genome PROTEOBACTERIA-GAMMA incomplete Facultative, Motile, Pathogen, Rod-shaped, Nonsporulating Medical, Animal Pathogen, Swine Pathogen Diarrhea Host, Human intestinal microflora USA Public Gi00240 001048_GCAT 562 Univ of Wisconsin Univ of Wisconsin NIH-NIAID Blattner FR http://www.genetics.wisc.edu/research/blattner/blattner_f.html Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O18ac:H7:K1 RS218 (NMEC) O18ac:H7:K1 Genome PROTEOBACTERIA-GAMMA incomplete Facultative, Motile, Pathogen, Rod-shaped, Nonsporulating Medical, Human Pathogen Neonatal meningitis, Septicemia, Urinary infection Host, Human intestinal microflora USA Public Gi00243 001049_GCAT 439184 19411 Univ of Wisconsin Univ of Wisconsin, BCM-HGSC NIH-NIAID Blattner FR http://www.genetics.wisc.edu/research/blattner/blattner_f.html Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli non-K1 invasive clinical isolate Genome PROTEOBACTERIA-GAMMA incomplete Facultative, Motile, Pathogen, Rod-shaped, Nonsporulating Medical, Human Pathogen Diarrhea Host, Human intestinal microflora European Consortium Public Gi00242 001050_GCAT 562 Sanger Institute Sanger Institute, Institut Pasteur Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Firmicutes Clostridiales Eubacteriaceae Eubacterium Eubacterium eligens BACTERIAL Eubacterium eligens ATCC27750 ATCC27750 Genome FIRMICUTES incomplete Anaerobe, Rod-shaped Biotechnological, Medical None Host, Intestinal microflora, Soil Human feces USA Public Gi00245 001051_GCAT 39485 13226 Washington Univ Washington Univ NSF Gordon JI jgordon@molecool.wustl.edu Bacteria Firmicutes Clostridiales Eubacteriaceae Eubacterium Eubacterium rectale BACTERIAL Eubacterium rectale ATCC33656 ATCC33656 Genome FIRMICUTES incomplete Anaerobe Biotechnological None Host, Intestinal microflora USA Public Gi01743 001052_GCAT 39491 Washington Univ Washington Univ NSF Clifton S sclifton@watson.wustl.edu) Bacteria Firmicutes unclassified unclassified unclassified Eubacterium dolichum BACTERIAL Eubacterium dolichum DSM 3991 ABI, 454 11.6x ATCC 29143, DSM 3991 Genome FIRMICUTES Draft incomplete Anaerobe, Rod-shaped Medical None Host, Intestinal microflora 37 Human feces USA 38.1 Public Gi01923 002547_GCAT 428127 18927 2200 NZ_ABAW00000000 Washington Univ Washington Univ NSF Clifton S sclifton@watson.wustl.edu) Bacteria Firmicutes Bacillales Bacillaceae Exiguobacterium Exiguobacterium sibiricum BACTERIAL Exiguobacterium sibiricum 255-15 ABI Draft-Genome FIRMICUTES Draft incomplete Psychrophile, Rod-shaped, Facultative, Nonsporulating Biotechnological, Astrobiological None Permafrost sediment 2-3 million-year permafrost core in Siberia Russia USA 47.8 Public Gi00247 001053_GCAT 262543 10649 638341091 3030 2977 NZ_AADW00000000 NCBI, Joint Genome Institute, MSU Joint Genome Institute, Michigan State Univ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Bacillales Bacillaceae Exiguobacterium Exiguobacterium sp. AT1b BACTERIAL Exiguobacterium sp. AT1b Genome FIRMICUTES incomplete Psychrophile, Rod-shaped, Facultative, Nonsporulating Biotechnological, Astrobiological None Permafrost sediment USA 47.8 Public Gi02005 002634_GCAT 360911 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Fibrobacteres Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter succinogenes BACTERIAL Fibrobacter succinogenes S85 Genome FIBROBACTERES incomplete Cellulolytic, Anaerobe, Nonmotile, Nonsporulating Biotechnological None Host 37 USA Public Gi00251 001055_GCAT 59374 47 3600 TIGR, NACRB USDA Nelson KE http://www.tigr.org/~kenelson/ Bacteria Bacteroidetes Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium psychrophilum BACTERIAL Flavobacterium psychrophilum Genome BACTEROIDETES incomplete Psychrophile, Pathogen, Aerobe, Motile, Rod-shaped Medical, Fish Pathogen Bacterial cold water, Rainbow trout fry syndrome Aquatic USA Public Gi00252 001057_GCAT 96345 13227 NCCCWA, Integrated Genomics Inc USDA Wiens G gwiens@ncccwa.ars.usda.gov Bacteria Bacteroidetes Flavobacteriales Flavobacteriaceae Leeuwenhoekiella Leeuwenhoekiella blandensis BACTERIAL Leeuwenhoekiella blandensis MED217 ABI Genome BACTEROIDETES Draft incomplete Environmental, MMI None Marine NW Mediterranean Sea at a depth of 1m USA 39 Public Gi00843 001058_GCAT 398720 13573 638341115 4238 3735 NZ_AANC00000000 NCBI, JCVI J Craig Venter Institute, Kalmar Univ Moore Foundation Pinhassi J http://halia.hik.se/start.jsp?page=members/jarone%20pinhassi Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella philomiragia BACTERIAL Francisella philomiragia ATCC 25017 ATCC 25017 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Rod-shaped, Nonmotile, Aerobe Medical, Biothreat, Human Pathogen, Animal Pathogen Pneumonia, Septicemia Host USA 34 Public Gi00253 001059_GCAT 28110 16089 LLNL Joint Genome Institute, Lawrence Livermore National Lab, CDC Garcia E garcia12@llnl.gov Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis OR-960463 Genome PROTEOBACTERIA-GAMMA complete Pathogen, Rod-shaped, Nonmotile, Aerobe Medical, Human Pathogen, Animal Pathogen, Biothreat Tularemia Host, Aquatic USA Public Gi01516 001060_GCAT 263 Joint Genome Institute Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella philomiragia BACTERIAL Francisella philomirangia ATCC25015 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Rod-shaped, Nonmotile, Aerobe Medical, Biothreat, Human Pathogen, Animal Pathogen Pneumonia, Septicemia Host USA Public Gi01178 001062_GCAT 28110 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis ATCC6223 24x Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Rod-shaped, Nonmotile, Aerobe Medical, Biothreat, Human Pathogen, Animal Pathogen Pneumonia, Septicemia Host, Aquatic USA Public Gi01179 001063_GCAT 263 BCM-HGSC BCM-HGSC Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis KO971026 24.5x Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Rod-shaped, Nonmotile, Aerobe Medical, Biothreat, Human Pathogen, Animal Pathogen Pneumonia, Septicemia Host, Aquatic USA Public Gi01856 001064_GCAT 263 BCM-HGSC BCM-HGSC Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis MI001730 32.5x Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Rod-shaped, Nonmotile, Aerobe Medical, Biothreat, Human Pathogen, Animal Pathogen Pneumonia, Septicemia Host, Aquatic USA Public Gi01857 001065_GCAT 263 BCM-HGSC BCM-HGSC Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis OR96246 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Rod-shaped, Nonmotile, Aerobe Medical, Biothreat, Human Pathogen, Animal Pathogen Pneumonia, Septicemia Host, Aquatic USA Public Gi01858 001066_GCAT 263 BCM-HGSC BCM-HGSC Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis RC503 27.7x Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Rod-shaped, Nonmotile, Aerobe Medical, Biothreat, Human Pathogen, Animal Pathogen Pneumonia, Septicemia Host, Aquatic USA Public Gi01859 001067_GCAT 263 BCM-HGSC BCM-HGSC Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Bacteria Cyanobacteria Nostocales Microchaetaceae Microchaete Fremyella diplosiphon BACTERIAL Fremyella diplosiphon UTEX 481 Genome CYANOBACTERIA incomplete Filament-shaped Quorum sensing None Aquatic, Fresh water USA Public Gi01860 001068_GCAT 1197 12000 BCM-HGSC BCM-HGSC NSF Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Bacteria Fusobacteria Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum BACTERIAL Fusobacterium nucleatum ATCC23726 ATCC 23726 Genome FUSOBACTERIA incomplete Filament-shaped, Anaerobe, Pathogen, Nonmotile, Nonsporulating Medical, Human Pathogen Periodontal infection Host, Oral microflora USA Public Gi01861 001069_GCAT 851 BCM-HGSC BCM-HGSC Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Bacteria Firmicutes Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus reuteri BACTERIAL Lactobacillus reuteri MM4-1 28x Genome FIRMICUTES incomplete Probiotic, Non-Pathogen, Rod-shaped, Facultative, Nonmotile Food industry, Biotechnological None Host, Human intestinal microflora, Mammalian intestinal microflora, Birds intestinal microflora USA Public Gi01862 001070_GCAT 1598 BCM-HGSC BCM-HGSC Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Bacteria Firmicutes Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus reuteri BACTERIAL Lactobacillus reuteri SD2112 17.8x ATCC 55730 Genome FIRMICUTES incomplete Probiotic, Non-Pathogen, Rod-shaped, Facultative, Nonmotile Food industry, Biotechnological None Host, Human intestinal microflora, Mammalian intestinal microflora, Birds intestinal microflora USA Public Gi01863 001071_GCAT 1598 BCM-HGSC BCM-HGSC Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Bacteria Proteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia prowazekii BACTERIAL Rickettsia prowazekii Madrid E (virulent ancestor) Genome PROTEOBACTERIA-ALPHA incomplete Pathogen, Aerobe, Nonmotile, Nonsporulating, Obligate parasite Medical, Biothreat, Human Pathogen Typhus, Rocky Mountain Spotted Fever Host USA Public Gi01864 001072_GCAT 272947 1300 BCM-HGSC BCM-HGSC NIH-NIAID Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Bacteria Proteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia prowazekii BACTERIAL Rickettsia prowazekii Nuevo Leon Amblyomma tick 52x Genome PROTEOBACTERIA-ALPHA incomplete Pathogen, Aerobe, Nonmotile, Nonsporulating, Obligate parasite Medical, Biothreat, Human Pathogen Typhus, Rocky Mountain Spotted Fever Host Mexican tick USA Public Gi01865 001073_GCAT 782 BCM-HGSC BCM-HGSC Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Bacteria Proteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia prowazekii BACTERIAL Rickettsia prowazekii RP22 Genome PROTEOBACTERIA-ALPHA incomplete incomplete Pathogen, Aerobe, Nonmotile, Nonsporulating, Obligate parasite Medical, Biothreat, Human Pathogen Typhus, Rocky Mountain Spotted Fever Host France Public Gi02334 003056_GCAT 449216 19813 CNRS Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus MRSA USA300_TCH1516 Genome FIRMICUTES incomplete Coccus-shaped, Nonsporulating, Nonmotile, Facultative, Pathogen, Meticillin resistant Medical, Human Pathogen Septicemia, Pneumonia Host 30 - 37 USA Public Gi01866 001074_GCAT 367830 19489 BCM-HGSC BCM-HGSC Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus USA300_TCH959 Genome FIRMICUTES incomplete incomplete Coccus-shaped, Nonsporulating, Nonmotile, Facultative, Pathogen, Meticillin resistant Medical, Human Pathogen Septicemia, Pneumonia Host 30 - 37 USA Public Gi02336 003058_GCAT 450394 19921 BCM-HGSC BCM-HGSC Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus MSSA Genome FIRMICUTES incomplete Coccus-shaped, Nonsporulating, Nonmotile, Facultative, Pathogen, Meticillin resistant Medical, Human Pathogen Septicemia, Pneumonia Host 30 - 37 USA Public Gi01867 001075_GCAT 1280 BCM-HGSC BCM-HGSC Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus equinus BACTERIAL Streptococcus bovis Genome FIRMICUTES incomplete Pathogen, Nonmotile, Nonsporulating, Facultative Medical, Human Pathogen, Swine Pathogen, Animal Pathogen Meningitis, Endocarditis, Septicemia, Arthritis Host USA Public Gi01868 001076_GCAT 1335 BCM-HGSC BCM-HGSC NIH-NIAID Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Bacteria Spirochaetes Spirochaetales Spirochaetaceae Treponema Treponema pallidum BACTERIAL Treponema pallidum pallidum Dallas1 54.1x Genome SPIROCHAETES incomplete Pathogen, Anaerobe, Motile, Spiral-shaped, Motile Medical, Human Pathogen Syphilis Host USA Public Gi01869 001077_GCAT 161 BCM-HGSC BCM-HGSC NIH-NIAID Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Bacteria Spirochaetes Spirochaetales Spirochaetaceae Treponema Treponema pallidum BACTERIAL Treponema pallidum pallidum SS14 48.8x Genome SPIROCHAETES incomplete Pathogen, Anaerobe, Motile, Spiral-shaped, Motile Medical, Human Pathogen Syphilis Host USA Public Gi01870 001078_GCAT 161 20067 BCM-HGSC BCM-HGSC NIH-NIAID Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Bacteria Spirochaetes Spirochaetales Spirochaetaceae Treponema Treponema pallidum BACTERIAL Treponema pallidum pertenue CDC2 42.7x Genome SPIROCHAETES incomplete Pathogen, Anaerobe, Motile, Spiral-shaped, Motile Medical, Human Pathogen Yaws Host USA Public Gi01871 001079_GCAT 168 BCM-HGSC BCM-HGSC NIH-NIAID Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Bacteria Spirochaetes Spirochaetales Spirochaetaceae Treponema Treponema pallidum BACTERIAL Treponema pallidum pertenue Gauthier 48.1x Genome SPIROCHAETES incomplete Pathogen, Anaerobe, Motile, Spiral-shaped, Motile Medical, Human Pathogen Yaws Host USA Public Gi01872 001080_GCAT 168 BCM-HGSC BCM-HGSC NIH-NIAID Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Bacteria Spirochaetes Spirochaetales Spirochaetaceae Treponema Treponema pallidum BACTERIAL Treponema pallidum pertenue Samoan D 30.6x Genome SPIROCHAETES incomplete Pathogen, Anaerobe, Motile, Spiral-shaped, Motile Medical, Human Pathogen Yaws Host USA Public Gi01873 001081_GCAT 168 BCM-HGSC BCM-HGSC NIH-NIAID Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Bacteria Spirochaetes Spirochaetales Spirochaetaceae Treponema Treponema paraluiscuniculi BACTERIAL Treponema paraluiscuniculi 59.1x Genome SPIROCHAETES incomplete Pathogen, Anaerobe, Motile, Spiral-shaped, Motile Medical, Human Pathogen Host USA Public Gi01874 001082_GCAT 53435 BCM-HGSC BCM-HGSC NIH-NIAID Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis holarctica FSC022 Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Rod-shaped, Nonmotile, Aerobe Medical, Biothreat, Human Pathogen, Animal Pathogen Pneumonia, Septicemia Host, Aquatic USA 32.1 Public Gi01180 001083_GCAT 263 19015 1900 NZ_AAYD00000000 NCBI, Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis tularensis FSC033 Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Rod-shaped, Nonmotile, Aerobe, Rod-shaped Medical, Biothreat, Human Pathogen, Animal Pathogen Pneumonia, Septicemia Host, Aquatic USA Public Gi01181 001084_GCAT 263 19017 1844 NZ_AAYE00000000 NCBI, Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis holarctica FSC257 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Rod-shaped, Nonmotile, Aerobe Medical, Biothreat, Human Pathogen, Animal Pathogen Pneumonia, Septicemia Host, Aquatic USA Public Gi01182 001085_GCAT 263 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis tularensis MA00-2987 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Rod-shaped, Nonmotile, Aerobe Medical, Biothreat, Human Pathogen, Animal Pathogen Pneumonia, Septicemia Host, Aquatic USA Public Gi01183 001086_GCAT 263 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis novicida UT01-4992 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Halophile, Nonmotile, Aerobe Medical, Human Pathogen, Biothreat Tularemia Host, Aquatic USA Public Gi00256 001087_GCAT 264 LLNL Lawrence Livermore National Lab, CDC Garcia E garcia12@llnl.gov Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis novicida GA99-3548 Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Halophile, Nonmotile, Aerobe Medical, Human Pathogen, Biothreat Tularemia Host, Aquatic USA Public Gi01184 001088_GCAT 442346 19573 1845 NZ_ABAH00000000 NCBI, Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella philomiragia BACTERIAL Francisella philomiragia ATCC25015 ATCC 25015 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Rod-shaped, Nonmotile, Aerobe Medical, Human Pathogen, Biothreat Pneumonia, Septicemia Host USA Public Gi01903 002536_GCAT 28110 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis novicida GA99-3549 Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Halophile, Nonmotile, Aerobe, Rod-shaped Medical, Human Pathogen, Biothreat Tularemia Host, Aquatic USA Public Gi01185 001089_GCAT 430558 19019 1897 NZ_AAYF00000000 NCBI, Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis holarctica FSC200 Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Nonmotile, Aerobe Medical, Human Pathogen, Biothreat Tularemia Host, Aquatic Patient with type B tularemia USA 32 Public Gi01160 001090_GCAT 351581 16087 2000 NZ_AASP00000000 Univ of Washington Univ of Washington Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 305 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Motile, Aerobe, Rod-shaped Medical, Human Pathogen, Animal Pathogen Melioidosis Soil Autopsy sample from the brain of a fatal melioidosis encephalomyelitis case at the Royal Darwin Hospital, Northern Territory, Australia USA 67 Public Gi02290 003012_GCAT 425067 18775 640612222 7453 7371 NZ_AAYX00000000 NCBI Los Alamos National Laboratory Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium liflandii BACTERIAL Mycobacterium liflandii 128FXT ABI Genome ACTINOBACTERIA incomplete incomplete Pathogen, Nonmotile, Aerobe, Rod-shaped, Nonsporulating Medical, Animal Pathogen, Frog Pathogen Systemic disease Host 32 Colony of African clawed frogs Australia Public Gi02288 003010_GCAT 459424 20227 Monash Univ Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium marinum BACTERIAL Mycobacterium marinum DL240490 ABI Genome ACTINOBACTERIA incomplete incomplete Pathogen, Nonmotile, Aerobe, Rod-shaped, Nonsporulating Medical, Fish Pathogen, Human Pathogen Fish Tuberculosis-like infection, Skin infection Host 32 European seabass, Dicentrarchus labrax from the Red Sea Australia Public Gi02289 003011_GCAT 459420 20229 Monash Univ Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium ulcerans BACTERIAL Mycobacterium ulcerans 1615 ABI Genome ACTINOBACTERIA incomplete incomplete Pathogen, Nonmotile, Aerobe, Rod-shaped, Nonsporulating Medical, Human Pathogen Buruli ulcer Host 32 Malaysia Australia Public Gi02291 003013_GCAT 459428 20231 Monash Univ Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus lentus BACTERIAL Bacillus lentus PS5 ABI Genome FIRMICUTES incomplete incomplete Alkaliphile, Rod-shaped, Sporulating Biotechnological Iran Public Gi02292 003014_GCAT 456487 19977 Boo Ali sina Univ Bacteria Actinobacteria Actinomycetales Frankiaceae Frankia Frankia sp. BACTERIAL Frankia sp. cluster 2 Plants Genome ACTINOBACTERIA incomplete Filament-shaped, Nitrogen fixation Agricultural None Soil USA Public Gi01571 001092_GCAT 1855 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Aurantimonadaceae Fulvimarina Fulvimarina pelagi BACTERIAL Fulvimarina pelagi HTCC2506 Genome PROTEOBACTERIA-ALPHA Draft incomplete Aerobe, Chemoheterotroph, Nonmotile, Rod-shaped Environmental, MMI None Marine 30 Seawater collected from a depth of 10m at the Bermuda Atlantic Time Series station in the Sargasso Sea USA 61 Public Gi00844 001093_GCAT 314231 13506 639857001 3800 3754 NZ_AATP00000000 NCBI, Oregon State Univ, JCVI J Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm Bacteria Fusobacteria Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum BACTERIAL Fusobacterium nucleatum polymorphum ATCC10953 13x ATCC 10953 Genome FUSOBACTERIA Draft incomplete Chemoorganotroph, Nonmotile, Pathogen, Anaerobe, Nonsporulating, Filament-shaped Medical, Human Pathogen Periodontal infection Host, Oral microflora USA 27 Public Gi00264 001094_GCAT 76857 17261 2400 NZ_AARG00000000 NCBI, BCM-HGSC BCM-HGSC, UCLA NIH-NIDCR Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Bacteria Fusobacteria Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum BACTERIAL Fusobacterium nucleatum vincentii ATCC 49256 ABI ATCC 49256 Genome FUSOBACTERIA Draft incomplete Chemoorganotroph, Nonmotile, Pathogen, Anaerobe, Nonsporulating, Filament-shaped Medical, Human Pathogen Periodontal infection Host, Oral microflora USA 27 Public Gi00265 001095_GCAT 209882 1419 638341097 2118 2277 NZ_AABF00000000 NCBI, Entrez Integrated Genomics Inc NIH Bacteria Proteobacteria Nitrosomonadales Gallionellaceae Gallionella Gallionella ferruginea BACTERIAL Gallionella ferruginea capsiferriformans TW-2 Genome PROTEOBACTERIA-BETA incomplete Aerobe, Iron oxidizer, Chemolithoautotroph Biotechnological, Bioremediation, Environmental None Soil USA Public Gi01557 001096_GCAT 370405 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Nitrosomonadales Gallionellaceae Gallionella Gallionella ferruginea BACTERIAL Gallionella ferruginea capsiferriformans ES-2 Genome PROTEOBACTERIA-BETA incomplete Aerobe, Iron oxidizer, Chemolithoautotroph Biotechnological, Bioremediation, Environmental None Soil USA Public Gi02007 002636_GCAT 370405 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis BACTERIAL Gardnerella vaginalis 594 ATCC 14018, NCTC 10287 Genome ACTINOBACTERIA incomplete Anaerobe, Rod-shaped, Fastidious Medical, Human Pathogen Bacterial vaginosis Host, Vaginal microflora Vaginal secretions USA Public Gi01273 001097_GCAT 2702 Stanford GTC Stanford Univ Ellison Medical Foundation Hyman R rhyman@stanford.edu Bacteria Planctomycetes Planctomycetales Planctomycetaceae Gemmata Gemmata sp. Wa1-1 BACTERIAL Gemmata sp. Wa1-1 Genome PLANCTOMYCETES incomplete Aerobe, Chemoheterotroph, Lack-peptidoglycan Biotechnological, Wastewater treatment None USA Proprietary Gi00271 001098_GCAT 235140 Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Bacteria Planctomycetes Planctomycetales Planctomycetaceae Gemmata Gemmata obscuriglobus BACTERIAL Gemmata obscuriglobus UQM 2246 Genome PLANCTOMYCETES incomplete Aerobe, Chemoheterotroph, Lack-peptidoglycan, Nonsporulating, Motile, Sphere-shaped Biotechnological, Wastewater treatment, Evolutionary None Aquatic Early 1980's from the surface waters of a freshwater dam in Queensland Australia USA 64.4 Public Gi00270 001099_GCAT 214688 338 9000 TIGR DOE Ward N nward@tigr.org Bacteria Deferribacteres Deferribacterales Deferribacteraceae Geovibrio Geovibrio thiophilus BACTERIAL Geovibrio thiophilus AAFu3T DSM 11263, ATCC BAA-311 Genome DEFERRIBACTERES complete Sulfur reducer, Nonsporulating, Spiral-shaped, Motile Evolutionary None Methanogenic mixed culture growing with acetone USA 50.2 Public Gi01619 001100_GCAT 139438 TIGR Bacteria Gemmatimonadetes Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca BACTERIAL Gemmatimonas aurantiaca T-27T JCM 11422T, DSM 14586T, NBRC 100505 Genome GEMMATIMONADETES complete Aerobe, EBPR, Rod-shaped Biotechnological, Wastewater treatment None 6.5-9.5 25 - 35 Anaerobic-aerobic sequential batch reactor under enhanced biological phosphorus removal conditions for wastewater treatment Japan 66 Public Gi01301 001101_GCAT 379066 NITE NITE Fujita N fujita-nobuyuki@nite.go.jp Bacteria Proteobacteria Desulfuromonadales Geobacteraceae Geobacter Geobacter sp. FRC-32 BACTERIAL Geobacter sp FRC-32 ABI 10x Genome PROTEOBACTERIA-DELTA Draft incomplete Rod-shaped, Motile, Anaerobe, Iron reducer, Uranium reducer, Chemolithotroph Bioremediation, Environmental, Biotechnological None Aquatic, Soil, Sediment Uranium-contaminated subsurface at US USA 53 Public Gi00944 001102_GCAT 316067 16263 638341098 3982 3396 NZ_AASH00000000 NCBI Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Desulfuromonadales Geobacteraceae Geobacter Geobacter bemidjiensis BACTERIAL Geobacter bemidjiensis Bem ABI 11x ATCC BAA-1014, DSM 16622 Genome PROTEOBACTERIA-DELTA Draft incomplete Rod-shaped, Nonmotile, Anaerobe, Iron reducer, Chemolithotroph Bioremediation, Environmental, Biotechnological None Soil, Sediment 30 Subsurface sediments collected in Bemidji Minnesotta USA 60.3 Public Gi01650 001103_GCAT 404380 17707 640612212 4539 3862 NZ_AAZA00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Bacillales Bacillaceae Geobacillus Geobacillus stearothermophilus BACTERIAL Geobacillus stearothermophilus L14 Genome FIRMICUTES incomplete Rod-shaped, Sporulating, Anaerobe, Thermophile, Motile Bioremediation, Environmental, Biotechnological None Soil Iran Public Gi01651 001104_GCAT 405537 17695 Tarbiat Modares Univ Bacteria Acidobacteria Acidobacteriales Acidobacteriaceae Geothrix Geothrix fermentans BACTERIAL Geothrix fermentans Genome ACIDOBACTERIA incomplete Iron reducer, Anaerobe Biotechnological None Soil, Groundwater Iron-reducing zone of petroleum-contaminated sediment USA Public Gi00808 001107_GCAT 44676 13380 Joint Genome Institute, Univ of Massachusetts Amherst DOE Bacteria Cyanobacteria Chroococcales unclassified Gloeothece Gloeothece membranacea BACTERIAL Gloeothece sp PCC 6909 ATCC27152 Genome CYANOBACTERIA incomplete Rod-shaped, Aerobe Environmental, MMI None Marine Cave wall in St. Kitts in Eastern Caribbean USA Public Gi00845 001108_GCAT 197232 13575 2500 JCVI J Craig Venter Institute, UCSC Moore Foundation Zehr JP http://oceansci.ucsc.edu/faculty/zehr.html Bacteria Proteobacteria Rhodospirillales Acetobacteraceae Gluconacetobacter Gluconacetobacter diazotrophicus BACTERIAL Gluconacetobacter diazotrophicus PAL5 Plants Genome PROTEOBACTERIA-ALPHA incomplete Nitrogen fixation, Acetic-acid, Diazotroph, Rod-shaped, Motile, Nonsporulating, Aerobe Agricultural None Host Brazil Public Gi00277 001109_GCAT 272568 377 4300 Riogene UFRJ, LNCC/MCT, AGROBIOLOGIA, UENF, UERJ FAPERJ, CNPq, MCT Ferreira PCG paulof@bioqmed.ufrj.br Bacteria Proteobacteria Rhodospirillales Acetobacteraceae Gluconacetobacter Gluconacetobacter diazotrophicus BACTERIAL Gluconacetobacter diazotrophicus PAL5 ATCC 49037 Genome PROTEOBACTERIA-ALPHA incomplete Nitrogen fixation, Acetic-acid, Diazotroph, Rod-shaped, Motile, Nonsporulating, Aerobe Agricultural None Host 30 USA Public Gi00278 001110_GCAT 272568 2700 Univ of Wisconsin Univ of Wisconsin Herlache T tcherlache@facstaff.wisc.edu Bacteria Proteobacteria Rhodospirillales Acetobacteraceae Gluconacetobacter Gluconacetobacter diazotrophicus BACTERIAL Gluconacetobacter diazotrophicus PAL5 ATCC 49037 Genome PROTEOBACTERIA-ALPHA incomplete Nitrogen fixation, Acetic-acid, Diazotroph, Rod-shaped, Motile, Nonsporulating, Aerobe Agricultural None Host 30 sugarcane roots in Brazil USA Public Gi02011 002640_GCAT 272568 21071 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Pasteurellales Pasteurellaceae Aggregatibacter Aggregatibacter aphrophilus BACTERIAL Haemophilus aphrophilus Genome PROTEOBACTERIA-GAMMA incomplete Non-Pathogen, Facultative, Nonmotile Medical None Host, Oral microflora USA 44 Public Gi00945 001111_GCAT 732 2000 American Museum of Natural History DOE Di Bonaventura MP bonavent@amnh.org Bacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi PittDD Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Facultative, Nonmotile, Rod-shaped Medical, Human Pathogen Meningitis, Septicemia, Otitis media, Sinusitis, Chronic bronchitis Host Middle-ear effusion of a child in Pittsburgh USA 37.9 Public Gi01490 001112_GCAT 374834 16392 1760 Center for Genomic Sciences Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa PK6 Genome PROTEOBACTERIA-GAMMA incomplete Rod-shaped, Motile, Aerobe, Pathogen, Heterotroph, Mesophile Medical, Human Pathogen, Animal Pathogen Opportunistic infection Host, Soil, Aquatic 25 - 30 Mutant derivative of Pseudomonas aeruginosa strain PA01 USA Public Gi01695 001113_GCAT 419110 18571 Center for Genomic Sciences Bacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi 22.1-21, ST176 454 25x Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Facultative, Nonmotile, Rod-shaped Medical, Human Pathogen Meningitis, Septicemia, Otitis media, Sinusitis, Chronic bronchitis Host Nasopharynx of a healthy child USA 37.9 Public Gi01491 001114_GCAT 374927 16398 640612215 1850 2224 NZ_AAZD00000000 NCBI Center for Genomic Sciences Bacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi PittAA 454 Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Facultative, Nonmotile, Rod-shaped Medical, Human Pathogen Meningitis, Septicemia, Otitis media, Sinusitis, Chronic bronchitis Host Middle-ear effusion of a child in Pittsburgh USA 38.2 Public Gi01492 001115_GCAT 374928 16399 640612218 1900 1981 NZ_AAZG00000000 NCBI Center for Genomic Sciences Bacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi PittBB Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Facultative, Nonmotile, Rod-shaped Medical, Human Pathogen Meningitis, Septicemia, Otitis media, Sinusitis, Chronic bronchitis Host Middle-ear effusion of a child in Pittsburgh USA Public Gi01495 001118_GCAT 374929 16402 Center for Genomic Sciences Bacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi PittCC Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Facultative, Nonmotile, Rod-shaped Medical, Human Pathogen Meningitis, Septicemia, Otitis media, Sinusitis, Chronic bronchitis Host Middle-ear effusion of a child in Pittsburgh USA Public Gi01696 001119_GCAT 410252 18099 Center for Genomic Sciences Bacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi PittFF Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Facultative, Nonmotile, Rod-shaped Medical, Human Pathogen Meningitis, Septicemia, Otitis media, Sinusitis, Chronic bronchitis Host External auditory canal of an otorrheic child in Pittsburgh who had spontaneously perforated his tympanic membrane USA Public Gi01697 001120_GCAT 410253 18101 Center for Genomic Sciences Bacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi PittJJ Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Facultative, Nonmotile, Rod-shaped Medical, Human Pathogen Meningitis, Septicemia, Otitis media, Sinusitis, Chronic bronchitis Host Middle-ear effusion of a child in Pittsburgh USA Public Gi01698 001121_GCAT 410254 18103 Center for Genomic Sciences Bacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi 3655 454 25x Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Facultative, Nonmotile, Rod-shaped Medical, Human Pathogen Meningitis, Septicemia, Otitis media, Sinusitis, Chronic bronchitis Host Middle ear effusion of a child in Missouri with acute otitis media USA 38 Public Gi01496 001122_GCAT 375177 16395 640612217 1850 1929 NZ_AAZF00000000 NCBI Center for Genomic Sciences Bacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi 22.4-21, ST165 454 25x Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Facultative, Nonmotile, Rod-shaped Medical, Human Pathogen Meningitis, Septicemia, Otitis media, Sinusitis, Chronic bronchitis Host Nasopharynx of the same healthy child USA 37.9 Public Gi01497 001123_GCAT 375063 16396 640612216 1890 NZ_AAZE00000000 NCBI Center for Genomic Sciences Bacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi PittHH 454 35x Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Facultative, Nonmotile Medical, Human Pathogen Meningitis, Septicemia, Otitis media, Sinusitis, Chronic bronchitis Host Middle-ear effusion of a child in Pittsburgh USA 38 Public Gi01498 001124_GCAT 374932 16403 640612207 1830 1977 NZ_AAZH00000000 NCBI Center for Genomic Sciences Bacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi PittII Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Facultative, Nonmotile, Rod-shaped Medical, Human Pathogen Meningitis, Septicemia, Otitis media, Sinusitis, Chronic bronchitis Host Middle-ear effusion of a child in Pittsburgh USA 38 Public Gi01499 001125_GCAT 374933 16404 640612208 1954 2028 NZ_AAZI00000000 NCBI Center for Genomic Sciences Bacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi R3021 Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Facultative, Nonmotile, Rod-shaped Medical, Human Pathogen Meningitis, Septicemia, Otitis media, Sinusitis, Chronic bronchitis Host Nasopharynx of a healthy individual USA 38 Public Gi01500 001126_GCAT 375432 16423 640612209 1851 2307 NZ_AAZJ00000000 NCBI Center for Genomic Sciences Bacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi 3224A Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Facultative, Nonmotile, Rod-shaped Medical, Human Pathogen Meningitis, Septicemia, Otitis media, Sinusitis, Chronic bronchitis Host USA Public Gi00284 001127_GCAT 727 Ohio State Univ, Microgen Ohio State Univ NIH-NIDCD Dyer D david-dyer@ouhsc.edu Bacteria Bacteroidetes Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium columnare BACTERIAL Flavobacterium columnare ATCC 49512 ATCC 49512 Genome BACTEROIDETES incomplete Pathogen, Aerobe, Motile, Rod-shaped Fish Pathogen Columnaris disease Aquatic USA 32 Public Gi01994 002623_GCAT 996 Microgen Mississippi State Univ USDA/CSREES Dyer D david-dyer@ouhsc.edu Bacteria Bacteroidetes Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium branchiophilum BACTERIAL Flavobacterium branchiophilum FL15 ABI Genome BACTEROIDETES incomplete incomplete Pathogen, Aerobe, Motile, Rod-shaped Fish Pathogen Gill disease Aquatic France Public Gi02340 003062_GCAT 55197 2800 Genoscope Genoscope, INRA Barbe V vbarbe@genoscope.cns.fr Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium sticklandii BACTERIAL Flavobacterium sticklandii DSM 519 ABI 12x DSM 519, ATCC 12662, NCIB 10654 Genome FIRMICUTES Draft incomplete Anaerobe, Sporulating, Rod-shaped, Motile, Mesophile Biotechnological None Aquatic, Soil, Host 30-37 Mud water France Public Gi02341 003063_GCAT 1511 6000 Genoscope Genoscope Fonknechten N fonk@genoscope.cns.fr Bacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae R2846 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Facultative, Nonmotile, Rod-shaped Medical, Human Pathogen Meningitis, Septicemia, Otitis media, Sinusitis Host Middle ear fluid of a child with acute otitis media USA 38 Public Gi00282 001128_GCAT 262727 9620 638341100 1800 1691 NZ_AADO00000000 NCBI, Univ of Washington Univ of Washington, SBRI Smith A http://www.sbri.org/research/a_smith.asp Bacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae R2866 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Facultative, Nonmotile, Rod-shaped Medical, Human Pathogen Meningitis, Septicemia, Otitis media, Sinusitis Host Blood of a child with meningitis USA 38.1 Public Gi00283 001129_GCAT 262728 9621 638341101 1890 1817 NZ_AADP00000000 NCBI, Univ of Washington Univ of Washington, SBRI Smith A http://www.sbri.org/research/a_smith.asp Bacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae serotype B 10810 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Facultative, Nonmotile, Rod-shaped Medical, Human Pathogen Meningitis, Respiratory infection Host United Kingdom Public Gi00819 001130_GCAT 727 2100 Sanger Institute Sanger Institute, Univ of Oxford Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus parainfluenzae BACTERIAL Haemophilus parainfluenzae T3T1 Genome PROTEOBACTERIA-GAMMA incomplete Facultative, Nonmotile, Rod-shaped, Non-Pathogen None United Kingdom Public Gi00820 001131_GCAT 729 2000 Sanger Institute Sanger Institute, Univ of Oxford Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Pasteurellales Pasteurellaceae Histophilus Histophilus somni BACTERIAL Haemophilus somnus 2336 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Rod-shaped, Facultative Medical, Human Pathogen, Animal Pathogen Pneumonia, Arthritis, Myocarditis Host USA 37.4 Public Gi00287 001132_GCAT 228400 388 638341102 2247 2081 NZ_AACJ00000000 NCBI, Microgen Univ of Oklahoma, Virginia Polytechnic Institute USDA/CSREES Dyer D david-dyer@ouhsc.edu Bacteria Proteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter mustelae BACTERIAL Helicobacter mustelae ATCC 43772 Genome PROTEOBACTERIA-EPSILON complete Pathogen, Motile, Aerobe, Spiral-shaped Medical, Human Pathogen Gastric Ulcerations Host Gastric mucosa of a ferret United Kingdom Public Gi00294 001133_GCAT 217 13426 1690 Sanger Institute Sanger Institute, Univ College Cork Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori gastric cancer1 Genome PROTEOBACTERIA-EPSILON incomplete Pathogen, Motile, Aerobe, Spiral-shaped Medical, Human Pathogen Ulcer, Gastric inflammation Host, Human stomach Sweden Public Gi00571 001134_GCAT 210 Karolinska Institute, Univ of Uppsala SSF Bacteria Proteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori gastric cancer2 Genome PROTEOBACTERIA-EPSILON incomplete Pathogen, Motile, Aerobe, Spiral-shaped Medical, Human Pathogen Ulcer, Gastric inflammation Host, Human stomach Sweden Public Gi00572 001135_GCAT 210 Karolinska Institute, Univ of Uppsala SSF Bacteria Proteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori duodenal ulcer Genome PROTEOBACTERIA-EPSILON incomplete Pathogen, Motile, Aerobe, Spiral-shaped Medical, Human Pathogen Ulcer, Gastric inflammation Host, Human stomach Sweden Public Gi00295 001136_GCAT 210 Karolinska Institute, Univ of Uppsala SSF Bacteria Firmicutes Clostridiales Heliobacteriaceae Heliobacillus Heliobacillus mobilis BACTERIAL Heliobacillus mobilis Genome FIRMICUTES incomplete Photosynthetic, Rod-shaped, Motile, Anaerobe, Phototroph, Sporulating Biotechnological None Soil USA 50.3 Proprietary Gi00296 001137_GCAT 28064 13236 4200 4500 Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Bacteria Firmicutes Clostridiales Heliobacteriaceae Heliobacterium Heliobacterium modesticaldum BACTERIAL Heliobacterium modesticaldum 16.9x Genome FIRMICUTES complete incomplete Photosynthetic, Phototroph, Anaerobe, Motile, Sporulating Environmental None Aquatic, Hot spring, Soil hot spring microbial mats and volcanic soil USA Public Gi00725 001138_GCAT 35701 13427 3055 1 0 TGen Arizona State Univ, TGen NSF Blankenship RE Blankenship@asu.edu Bacteria Chloroflexi Chloroflexales Chloroflexaceae Heliothrix Heliothrix oregonensis BACTERIAL Heliothrix oregonensis Genome CHLOROFLEXI incomplete Filament-shaped, Photosynthetic, Facultative, Halophile, Phototroph, Motile Biotechnological None Aquatic, Hot spring Alkaline hot springs USA Public Gi00946 001139_GCAT 1110 5000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Oxalobacteraceae Herbaspirillum Herbaspirillum seropedicae BACTERIAL Herbaspirillum seropedicae Z67 ATCC35892 Genome PROTEOBACTERIA-BETA incomplete Nitrogen fixation, Spiral-shaped, Motile, Aerobe Biotechnological None Soil, Host Roots of rice plants Brazil Public Gi01013 001140_GCAT 964 15704 Genopar Genopar Consortium Pedrosa FO fpedrosa@bio.ufpr.br Bacteria Actinobacteria Actinomycetales Intrasporangiaceae Janibacter Janibacter sp. HTCC2649 BACTERIAL Janibacter sp. HTCC2649 ABI HTCC2649 Genome ACTINOBACTERIA Draft incomplete Environmental, MMI None Marine Sargasso Sea at a depth of 10m USA 68.4 Public Gi00846 001143_GCAT 313589 13546 638341107 4228 4100 NZ_AAMN00000000 NCBI, Oregon State Univ, JCVI J Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Klebsiella Klebsiella oxytoca BACTERIAL Klebsiella oxytoca M5al VJSK009 Genome PROTEOBACTERIA-GAMMA incomplete Facultative, Nonmotile, Dinitrogen-fixing, Non-Pathogen, Prototrophic, Pathogen Biotechnological, Medical, Human Pathogen Spontaneous infectious spondylodiscitis Intestinal microflora Early 1950's from a 2-3 butanediol fermentation USA Public Gi00304 001146_GCAT 290337 12627 6000 Washington Univ Washington Univ NIH-NIAID Clifton S sclifton@watson.wustl.edu Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Klebsiella Klebsiella pneumoniae BACTERIAL Klebsiella pneumoniae Kp342 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Facultative, Nonmotile, Rod-shaped, Lactose fermenting Medical, Animal Pathogen, Cattle Pathogen Pneumonia, Urinary tract infection, Bacteremia Host, Aquatic, Soil, Mouth microflora, Skin microflora, Intestinal microflora USA Public Gi01252 001148_GCAT 573 TIGR Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Klebsiella Klebsiella pneumoniae BACTERIAL Klebsiella pneumoniae Genome PROTEOBACTERIA-GAMMA complete Pathogen, Facultative, Nonmotile, Rod-shaped, Lactose fermenting Medical, Animal Pathogen, Cattle Pathogen Pneumonia, Urinary tract infection, Bacteremia Host, Aquatic, Soil, Mouth microflora, Skin microflora, Intestinal microflora USA 40 Proprietary Gi00305 001149_GCAT 573 PathoGenome-TM Genome Therapeutics Bacteria Firmicutes Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus helveticus BACTERIAL Lactobacillus helveticus CNRZ32 Genome FIRMICUTES incomplete Probiotic, Rod-shaped, Facultative, Nonmotile Food industry, Biotechnological None Intestinal microflora USA Public Gi00315 001150_GCAT 326425 13430 2300 Univ of Wisconsin, Utah State Univ Steele J http://www.wisc.edu/foodsci/faculty/steele/ Bacteria Firmicutes Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus helveticus BACTERIAL Lactobacillus helveticus DPC 4571 Genome FIRMICUTES incomplete Probiotic, Rod-shaped, Facultative, Nonmotile Food industry, Biotechnological None Intestinal microflora Ireland Public Gi01652 001151_GCAT 405566 17811 Teagasc Bacteria Firmicutes Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus reuteri BACTERIAL Lactobacillus reuteri 100-23 ABI 11x Genome FIRMICUTES Draft incomplete Probiotic, Non-Pathogen, Rod-shaped, Facultative, Nonmotile Food industry, Biotechnological None Host, Human intestinal microflora, Mammalian intestinal microflora, Birds intestinal microflora USA 38 Public Gi00762 001152_GCAT 349123 13431 638341112 2174 1972 NZ_AAPZ00000000 NCBI Joint Genome Institute, Univ of Otago DOE Tannock G gerald.tannock@stonebow.otago.ac.nz Bacteria Firmicutes Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus rhamnosus BACTERIAL Lactobacillus rhamnosus HN001 Genome FIRMICUTES incomplete Probiotic, Non-Pathogen, Rod-shaped, Facultative, Nonmotile Food industry, Biotechnological None Intestinal microflora New Zealand Public Gi00316 001154_GCAT 47715 13434 New Zealand Dairy Board Bacteria Firmicutes Lactobacillales Streptococcaceae Lactococcus Lactococcus garvieae BACTERIAL Lactococcus garvieae ATCC 49156 ATCC 49156 Genome FIRMICUTES complete incomplete Pathogen, Facultative, Coccus-shaped Medical, Human Pathogen, Fish Pathogen, Mammal Pathogen Lactococcosis, Mastitis Host Japan Public Gi01892 001155_GCAT 420889 18705 Kitasato Univ Bacteria Firmicutes Lactobacillales Streptococcaceae Lactococcus Lactococcus garvieae BACTERIAL Lactococcus garvieae Lg2 Genome FIRMICUTES complete incomplete Pathogen, Facultative, Coccus-shaped Medical, Human Pathogen, Fish Pathogen, Mammal Pathogen Lactococcosis, Mastitis Host Japan Public Gi01893 001156_GCAT 420890 18707 Kitasato Univ Bacteria Proteobacteria Legionellales Legionellaceae Tatlockia Tatlockia micdadei BACTERIAL Legionella micdadei Genome PROTEOBACTERIA-GAMMA complete Pathogen Medical, Human Pathogen Pneumonia Aquatic Germany Public Gi00825 001157_GCAT 451 IMB, Jena Gloeckner G gernot@imb-jena.de Bacteria Proteobacteria Legionellales Legionellaceae Legionella Legionella longbeachae BACTERIAL Legionella longbeachae Genome PROTEOBACTERIA-GAMMA complete Pathogen, Rod-shaped, Motile, Aerobe Medical, Human Pathogen Pneumonia, Legionellosis Host, Aquatic, Soil France Public Gi01014 001158_GCAT 450 16090 Institut Pasteur Bacteria Proteobacteria Legionellales Legionellaceae Legionella Legionella anisa BACTERIAL Legionella anisa Genome PROTEOBACTERIA-GAMMA complete Non-Pathogen Medical None Aquatic France Public Gi01015 001159_GCAT 28082 Institut Pasteur Bacteria Proteobacteria Legionellales Legionellaceae Legionella Legionella hackeliae BACTERIAL Legionella hackeliae LLAP10 Genome PROTEOBACTERIA-GAMMA complete Pathogen, Rod-shaped, Aerobe Medical, Human Pathogen Pneumonia, Respiratory infection Host, Aquatic Germany Public Gi00826 001160_GCAT 449 13436 IMB, Jena Gloeckner G gernot@imb-jena.de Bacteria Proteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila BACTERIAL Legionella pneumophila 2300/99 1 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Rod-shaped, Motile, Aerobe Medical, Human Pathogen Legionnaire's disease Host, Soil, Fresh water, Biofilm Spain Public Gi01894 001162_GCAT 423212 18743 Valencia Univ Bacteria Lentisphaerae Lentisphaerales unclassified Lentisphaera Lentisphaera araneosa BACTERIAL Lentisphaera araneosa HTCC2155 HTCC2155 Genome LENTISPHAERAE Draft incomplete Sphere-shaped, Nonmotile, Nonsporulating, Aerobe, Chemoheterotroph Evolutionary, Environmental, MMI None Marine, Coastal Coastal Pacific Ocean near Newport Oregon at a depth of 10m USA 48.3 Public Gi00847 001163_GCAT 313628 13437 640963040 6021 5104 NZ_ABCK00000000 Oregon State Univ, JCVI J Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm Bacteria Spirochaetes Spirochaetales Leptospiraceae Leptospira Leptospira interrogans BACTERIAL Leptospira interrogans pomona pomona Genome SPIROCHAETES incomplete Pathogen, Aerobe Medical, Animal Pathogen Leptospirosis Host, Soil, Aquatic USA Public Gi00848 001164_GCAT 44276 5000 Univ of Oklahoma Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Bacteria Spirochaetes Spirochaetales Leptospiraceae Leptospira Leptospira biflexa BACTERIAL Leptospira biflexa Patoc 1 Patoc ATCC 23582 Genome SPIROCHAETES incomplete incomplete Pathogen, Aerobe, Nonsporulating, Motile Medical, Animal Pathogen Leptospirosis Host, Soil, Aquatic France Public Gi01016 001165_GCAT 456481 20133 5000 Institut Pasteur Picardeau M mpicard@pasteur.fr Bacteria Nitrospirae Nitrospirales Nitrospiraceae Leptospirillum Leptospirillum ferriphilum BACTERIAL Leptospirillum sp. Group II UBA ABI Metagenome NITROSPIRAE incomplete incomplete Iron oxidizer, Acidophile, Pink-colored, Biofilm Biotechnological None Aquatic Richmond Mine, Iron Mountain CA from the Ultra Back A (UBA) site in June 2005 USA Public Gi00328 001166_GCAT 419542 18795 960 NCBI Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales unclassified Leptothrix Leptothrix cholodnii BACTERIAL Leptothrix cholodnii SP-6 Genome PROTEOBACTERIA-BETA incomplete incomplete Aerobe, Iron oxidizer, Heterotroph, Filament-shaped, Motile Biotechnological, Bioremediation, Environmental None Soil, Aquatic Water and flocculent from an artificial iron seep in Ithaca, NY USA Public Gi01560 001167_GCAT 395495 20039 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Lactobacillales Leuconostocaceae Leuconostoc Leuconostoc citreum BACTERIAL Leuconostoc citreum KM20 Genome FIRMICUTES incomplete Psychrotrophic, Facultative, Antimicrobial activities, Nonsporulating Biotechnological, Lactic acid production, Ethanol production, Acetate production, Food industry None Korea Public Gi00329 001168_GCAT 33964 13439 2000 GEM KRIBB Bacteria Firmicutes Lactobacillales Leuconostocaceae Leuconostoc Leuconostoc gasicomitatum BACTERIAL Leuconostoc gasicomitatum LMG 18811 Genome FIRMICUTES complete incomplete Psychrotrophic, Facultative, Antimicrobial activities, Nonsporulating, Rod-shaped Biotechnological, Lactic acid production, Ethanol production, Acetate production, Food industry None 4.5 4, 15 Finland 37 Public Gi01159 001169_GCAT 115778 15732 2000 1906 Univ of Helsinki Univ of Helsinki Paulin L http://www.biocenter.helsinki.fi/bi/DNA/contact.htm Bacteria Cyanobacteria Oscillatoriales unclassified Leptolyngbya Leptolyngbya valderiana BACTERIAL Leptolyngbya valderiana BDU 20041 Genome CYANOBACTERIA Draft incomplete Filament-shaped None Aquatic Bay of Bengal, at Point Calimare India 53.1 Public Gi01982 002609_GCAT 322866 19525 640963043 NZ_AAZV00000000 NFMC NFMC office@nfmc.res.in Bacteria Cyanobacteria Oscillatoriales unclassified Lyngbya Lyngbya sp. PCC 8106 BACTERIAL Lyngbya aestuarii CCY9616 PCC8106 Genome CYANOBACTERIA Draft incomplete Environmental, MMI None Aquatic, Marine, Salt marsh Intertidal zone in Mellum Germany USA 41 Public Gi00849 001170_GCAT 313612 13409 639857035 7036 6142 NZ_AAVU00000000 NCBI, JCVI Netherlands Institute of Ecology, J Craig Venter Institute Moore Foundation Stal LJ http://www.nioo.nl/PPAGES/lstal/ Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria ivanovii BACTERIAL Listeria ivanovii PAM55 Genome FIRMICUTES complete Pathogen, Facultative, Parasite, Motile, Nonsporulating, Rod-shaped Medical, Human Pathogen, Animal Pathogen Abortion, Stillbirth Host Infected ewe European Consortium Public Gi00331 001171_GCAT 1638 13441 3000 Institut Pasteur Institut Pasteur, Univ of Wuerzburg, Univ de Leon, AGOWA Glaser P http://www.dlvlaw.com/equipeeng/Philippe_Glaser.html Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes H7858 (meat isolate) 4b ABI Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Animal Pathogen, Cattle Pathogen, Swine Pathogen, Poultry Pathogen, Human Pathogen Listeriosis, Food poisoning Soil, Intestinal microflora, Food 30 - 37 Hot dog during an outbreak of listeriosis that occurred in multiple states in the USA in 1998-1999 USA 38 Public Gi00333 001172_GCAT 267410 10752 638341118 2972 3111 NZ_AADR00000000 NCBI TIGR USDA Nelson KE http://www.tigr.org/~kenelson/ Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes F6854, frankfurter isolate 1/2a ABI Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Animal Pathogen, Cattle Pathogen, Swine Pathogen, Poultry Pathogen Food poisoning Soil, Aquatic, Intestinal microflora, Food 30 - 37 USA 37.8 Public Gi00332 001173_GCAT 267409 10753 638341117 2953 2973 NZ_AADQ00000000 NCBI TIGR USDA Nelson KE http://www.tigr.org/~kenelson/ Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria seeligeri BACTERIAL Listeria seeligeri Genome FIRMICUTES complete Non-Pathogen, Rod-shaped, Nonsporulating, Motile, Facultative Medical None Germany 36 Public Gi00801 001174_GCAT 1640 13442 2797 GenDB-Bielefeld Univ Univ of Giessen, Univ of Wuerzburg, Qiagen, AGOWA BMBF Chakraborty T Trinad.Chakraborty@mikrobio.med.uni-giessen.de Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes serotype 4a 4a Genome FIRMICUTES incomplete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Animal Pathogen, Cattle Pathogen, Swine Pathogen, Poultry Pathogen, Human Pathogen Listeriosis, Food poisoning Soil, Aquatic, Intestinal microflora, Food Germany Public Gi00802 001175_GCAT 1639 3000 GenDB-Bielefeld Univ Univ of Giessen, Univ of Wuerzburg, AGOWA BMBF Chakraborty T Trinad.Chakraborty@mikrobio.med.uni-giessen.de Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes 10403S Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Animal Pathogen, Cattle Pathogen, Swine Pathogen, Poultry Pathogen, Human Pathogen Listeriosis, Food poisoning Soil, Aquatic, Intestinal microflora, Food, Host Mice USA 37 Public Gi01186 001176_GCAT 1639 17495 640963064 2866 NZ_AARZ00000000 NCBI, Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes F6900 Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Animal Pathogen, Cattle Pathogen, Swine Pathogen, Poultry Pathogen, Human Pathogen Listeriosis, Food poisoning Soil, Aquatic, Intestinal microflora, Food USA Public Gi01187 001177_GCAT 1639 17321 640963061 3000 2564 NZ_AARU00000000 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes Finland 1988 Genome FIRMICUTES incomplete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Animal Pathogen, Cattle Pathogen, Swine Pathogen, Poultry Pathogen, Human Pathogen Listeriosis, Food poisoning Soil, Aquatic, Intestinal microflora, Food USA Public Gi01188 001178_GCAT 1639 17319 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes FSL J1-194 Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Animal Pathogen, Cattle Pathogen, Swine Pathogen, Poultry Pathogen, Human Pathogen Listeriosis, Food poisoning Soil, Aquatic, Intestinal microflora, Food USA 37.8 Public Gi01190 001180_GCAT 1639 17299 3000 NZ_AARJ00000000 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes FSL J1-208 Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Animal Pathogen, Cattle Pathogen, Swine Pathogen, Poultry Pathogen, Human Pathogen Listeriosis, Food poisoning Soil, Aquatic, Intestinal microflora, Food USA 37.7 Public Gi01191 001181_GCAT 1639 17303 2300 NZ_AARL00000000 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes FSL J2-064 Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Animal Pathogen, Cattle Pathogen, Swine Pathogen, Poultry Pathogen, Human Pathogen Listeriosis, Food poisoning Soil, Aquatic, Intestinal microflora, Food 1 - 45 USA 37.9 Public Gi01192 001182_GCAT 1639 17309 2900 NZ_AARO00000000 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes FSL J2-071 Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Animal Pathogen, Cattle Pathogen, Swine Pathogen, Poultry Pathogen, Human Pathogen Listeriosis, Food poisoning Soil, Aquatic, Intestinal microflora, Food USA Public Gi01193 001183_GCAT 1639 17307 2900 NZ_AARN00000000 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes FSL N1-017 Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Animal Pathogen, Cattle Pathogen, Swine Pathogen, Poultry Pathogen, Human Pathogen Listeriosis, Food poisoning Soil, Aquatic, Intestinal microflora, Food 1 - 45 USA 37.8 Public Gi01194 001184_GCAT 1639 17311 640963059 3100 2789 NZ_AARP00000000 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes J0161, FSL R2-499 1/2a A503E, ILSI-35, LMB503 Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Animal Pathogen, Cattle Pathogen, Swine Pathogen, Poultry Pathogen, Human Pathogen Listeriosis, Food poisoning Soil, Aquatic, Intestinal microflora, Food A deli in the United States in 2000 during an epidemic outbreak USA 37 Public Gi01195 001185_GCAT 1639 17493 640963062 3051 NZ_AARW00000000 NCBI, Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes FSL R2-503 Genome FIRMICUTES incomplete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Animal Pathogen, Cattle Pathogen, Swine Pathogen, Poultry Pathogen, Human Pathogen Listeriosis, Food poisoning Soil, Aquatic, Intestinal microflora, Food USA Public Gi01196 001186_GCAT 1639 17315 3001 NZ_AARR00000000 NCBI, Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes FSL J1-175 Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Animal Pathogen, Cattle Pathogen, Swine Pathogen, Poultry Pathogen, Human Pathogen Listeriosis, Food poisoning Soil, Aquatic, Intestinal microflora, Food 30 - 37 Water USA 37 Public Gi02328 001187_GCAT 393118 17301 2902 NZ_AARK00000000 NCBI, Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes FSL R2-561 Genome FIRMICUTES incomplete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Animal Pathogen, Cattle Pathogen, Swine Pathogen, Poultry Pathogen, Human Pathogen Listeriosis, Food poisoning Soil, Intestinal microflora, Food, Aquatic USA Public Gi01197 001188_GCAT 1639 17317 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes FSL F2-515 Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Animal Pathogen, Cattle Pathogen, Swine Pathogen, Poultry Pathogen, Human Pathogen Listeriosis, Food poisoning Soil, Intestinal microflora, Food, Aquatic USA Public Gi01198 001189_GCAT 1639 17297 2586 NZ_AARI00000000 NCBI, Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes FSL J2-003 Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Animal Pathogen, Cattle Pathogen, Swine Pathogen, Poultry Pathogen, Human Pathogen Listeriosis, Food poisoning Soil, Intestinal microflora, Food, Aquatic 30 - 37 USA 37 Public Gi01199 001190_GCAT 1639 17305 2878 NZ_AARM00000000 NCBI, Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes FSL N3-165 Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Animal Pathogen, Cattle Pathogen, Swine Pathogen, Poultry Pathogen, Human Pathogen Listeriosis, Food poisoning Soil, Intestinal microflora, Food, Aquatic 30 - 37 USA 37.8 Public Gi01200 001191_GCAT 1639 17313 640963060 2886 NZ_AARQ00000000 NCBI, Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes Italy 1997 Genome FIRMICUTES incomplete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Animal Pathogen, Cattle Pathogen, Swine Pathogen, Poultry Pathogen, Human Pathogen Listeriosis, Food poisoning Soil, Intestinal microflora, Food, Aquatic USA Public Gi01201 001192_GCAT 1639 17323 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes Aureli1997 Genome FIRMICUTES incomplete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Animal Pathogen, Cattle Pathogen, Swine Pathogen, Poultry Pathogen, Human Pathogen Listeriosis, Food poisoning Soil, Intestinal microflora, Food, Aquatic USA Public Gi01653 001193_GCAT 1639 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes J2818 Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Animal Pathogen, Cattle Pathogen, Swine Pathogen, Poultry Pathogen, Human Pathogen Listeriosis, Food poisoning Soil, Intestinal microflora, Food, Aquatic 30 - 37 USA 37.8 Public Gi01202 001194_GCAT 1639 17327 640963063 2971 NZ_AARX00000000 NCBI, Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes LO28 Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Animal Pathogen, Cattle Pathogen, Swine Pathogen, Poultry Pathogen, Human Pathogen Listeriosis, Food poisoning Soil, Intestinal microflora, Food, Aquatic 30 - 37 USA 37 Public Gi01203 001195_GCAT 1639 17329 2910 NZ_AARY00000000 NCBI, Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes HPB2262 4b Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Animal Pathogen, Cattle Pathogen, Swine Pathogen, Poultry Pathogen, Human Pathogen Listeriosis, Food poisoning Soil, Intestinal microflora, Food, Aquatic 30 - 37 Case of febrile gastrointestinal illness among students and staff who had eaten at one of two school cafeterias in Northern Italy in 1997 USA 37.8 Public Gi01699 001196_GCAT 401650 17597 640963047 3006 NZ_AATL00000000 NCBI, Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Firmicutes Bacillales Listeriaceae Listeria Listeria grayi BACTERIAL Listeria grayi murrayi CLIP12515 Genome FIRMICUTES incomplete Nitrate reducer, Non-Pathogen, Rod-shaped, Motile, Facultative Biotechnological None 37 France 42 Public Gi00821 001198_GCAT 1641 13440 2600 Institut Pasteur, Univ of Wurzburg BMBF Kunst F fkunst@pasteur.fr Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Loktanella Loktanella vestfoldensis BACTERIAL Loktanella vestfoldensis SKA53 ABI Genome PROTEOBACTERIA-ALPHA Draft incomplete Aerobe, Chemoheterotroph, Nonmotile, Rod-shaped Environmental, MMI None Marine Seawater taken at a depth of 2-5m from the North Atlantic Ocean USA 60 Public Gi00850 001199_GCAT 314232 13444 638341119 3065 3068 NZ_AAMS00000000 NCBI, JCVI J Craig Venter Institute, Univ of Kalmar Moore Foundation Hagstrom A http://halia.hik.se/start.jsp?page=members/ake%20hagstrom Bacteria Proteobacteria Rhodospirillales Rhodospirillaceae Magnetospirillum Magnetospirillum magnetotacticum BACTERIAL Magnetospirillum magnetotacticum MS-1 ABI ATCC 31632 Draft-Genome PROTEOBACTERIA-ALPHA Draft complete Iron reducer, Magnetite production, Spiral-shaped, Motile, Aerobe, Heterotroph, Mesophile Biotechnological None Aquatic, Marine, Sediment Microaerobic zones from freshwater sediments USA 66.4 Public Gi00344 001200_GCAT 272627 6 638341121 9211 10146 NZ_AAAP00000000 NCBI, Joint Genome Institute Joint Genome Institute, CalTech DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhodospirillales Rhodospirillaceae Magnetospirillum Magnetospirillum gryphiswaldense BACTERIAL Magnetospirillum gryphiswaldense MSR-1 Genome PROTEOBACTERIA-ALPHA incomplete Iron reducer, Magnetite production, Spiral-shaped, Motile, Aerobe, Heterotroph, Mesophile Biotechnological None Aquatic Germany 66.4 Public Gi01955 002581_GCAT 431944 19063 Max Planck Institute Bacteria Proteobacteria Pasteurellales Pasteurellaceae Mannheimia Mannheimia haemolytica BACTERIAL Mannheimia (Pasteurella) haemolytica 2.4 Genome PROTEOBACTERIA-GAMMA complete Pathogen, Facultative, Coccus-shaped Medical, Animal Pathogen, Cattle Pathogen, Poultry, Pathogen, Agricultural Respiratory disease, Pasteurellosis, Ovine mastitis Host 37 Germany 41 Proprietary Gi00346 001201_GCAT 75985 2400 LION Bioscience AG, Intervet GmbH BMBF/ HRVet Bacteria Proteobacteria Pasteurellales Pasteurellaceae Mannheimia Mannheimia haemolytica BACTERIAL Mannheimia (Pasteurella) haemolytica PHL213 (ST1) 8.4x Genome PROTEOBACTERIA-GAMMA complete Pathogen, Facultative, Coccus-shaped Medical, Animal Pathogen, Cattle Pathogen, Poultry, Pathogen, Agricultural Respiratory disease, Pasteurellosis, Ovine mastitis Host 37 USA 41.1 Public Gi00347 001202_GCAT 272629 221 2569 NZ_AASA00000000 NCBI, BCM-HGSC BCM-HGSC USDA, NRICGP Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Bacteria Thermotogae Thermotogales Thermotogaceae Marinitoga Marinitoga camini BACTERIAL Marinitoga camini MV1075 Genome THERMOTOGAE incomplete Rod-shaped, Thermophile, Anaerobe, Halotolerant, Motile, Nonsporulating Evolutionary, Biotechnological None Aquatic, Hydrothermal vent 55 Mid-Atlantic Ridge hydrothermal vent chimney USA 29 Public Gi01018 001203_GCAT 106262 15680 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Alteromonadales Alteromonadaceae Marinobacter Marinobacter hydrocarbonoclasticus BACTERIAL Marinobacter hydrocarbonoclasticus ATCC49840 ATCC49840 Genome PROTEOBACTERIA-GAMMA incomplete Halophile, Oil degrading, Iron oxidizer, Rod-shaped, Motile, Facultative, Hydrocarbon degrading, Heterotroph Biotechnological, Environmental, Bioremediation, Detoxification None Aquatic France Public Gi01519 001204_GCAT 2743 Genoscope Genoscope Barbe V vbarbe@genoscope.cns.fr Bacteria Proteobacteria Alteromonadales Alteromonadaceae Marinobacter Marinobacter sp. F02 BACTERIAL Marinobacter sp FO2 Genome PROTEOBACTERIA-GAMMA incomplete Iron oxidizer, Autotroph, Chemolithoautotroph Environmental, MMI None Marine Juan de Fuca Ridge Middle Valley Vent at a depth of 2400 meters USA Public Gi00851 001205_GCAT 314342 13586 2600 JCVI J Craig Venter Institute, Woods Hole Oceanographic Institute Moore Foundation Edwards KJ http://www.whoi.edu/science/MCG/edwards/ Bacteria Proteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas sp. MED121 BACTERIAL Marinomonas sp. MED121 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Motile, Aerobe Environmental, MMI None Marine Northwest Mediterranean Sea at a depth of 1m USA 41 Public Gi00852 001206_GCAT 314277 13587 638341124 5121 4820 NZ_AANE00000000 NCBI, JCVI J Craig Venter Institute, Kalmar Univ Moore Foundation Pinhassi J http://halia.hik.se/start.jsp?page=members/jarone%20pinhassi Bacteria Proteobacteria Methylophilales Methylophilaceae Methylobacillus Methylobacillus flagellatus BACTERIAL Methylobacillus flagellatus KT Genome PROTEOBACTERIA-BETA incomplete Rod-shaped, Motile, Aerobe Bioremediation, Energy production, Biotechnological, Wastewater treatment, Environmental None Sludge Activated sludge found at the wastewater treatment plant in Moscow Russia USA 55.8 Proprietary Gi00367 001207_GCAT 265072 2884 2608 Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Bacteria Proteobacteria Rhizobiales Methylobacteriaceae Methylobacterium Methylobacterium extorquens BACTERIAL Methylobacterium extorquens AM1 Genome PROTEOBACTERIA-ALPHA incomplete Aerobe, Motile, Rod-shaped Biotechnological, Methanol production None 25 - 30 USA 65 Public Gi00369 001208_GCAT 272630 20 6000 Univ of Washington, Integrated Genomics Inc Univ of Washington, Integrated Genomics Inc Lidstrom M http://faculty.washington.edu/lidstrom/Mary_Lidstrom/mary_lidstrom.html Bacteria Proteobacteria Rhizobiales Methylobacteriaceae Methylobacterium Methylobacterium dichloromethanicum BACTERIAL Methylobacterium dichloromethanicum DM4 Genome PROTEOBACTERIA-ALPHA incomplete Aerobe, Motile, Rod-shaped, Methylotroph Biotechnological, Methanol production None Soil contaminated with halogenated (chlorine-containing) hydrocarbons France Public Gi01019 001209_GCAT 119024 16093 7000 Genoscope Genoscope Bacteria Proteobacteria Methylococcales Methylococcaceae Methylomonas Methylomonas sp. 16a BACTERIAL Methylomonas sp 16a Genome PROTEOBACTERIA-GAMMA complete Aerobe Biotechnological None USA Proprietary Gi00371 001210_GCAT 318114 4000 4000 DuPont Bacteria Proteobacteria Thiotrichales Piscirickettsiaceae Methylophaga Methylophaga thalassica BACTERIAL Methylophaga thalassica S1 Genome PROTEOBACTERIA-GAMMA incomplete Methylotroph, Rod-shaped, Aerobe Biotechnological None USA Proprietary Gi00372 001211_GCAT 40223 13471 Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Bacteria Cyanobacteria Chroococcales unclassified Microcystis Microcystis aeruginosa BACTERIAL Microcystis aeruginosa PCC 7806 Genome CYANOBACTERIA incomplete Pathogen, Hepatotoxins synthesis, Aerobe Medical, Fish Pathogen, Human Pathogen, Animal Pathogen Cyanobacterial hepatotoxicosis, Gastrointestinal disease, Skin irritation Host, Aquatic, Gastrointestinal tract, Soil France Public Gi00374 001212_GCAT 267872 15702 4800 Institut Pasteur Institut Pasteur de Marsac NT NTMarsac@Pasteur.Fr Bacteria Bacteroidetes Sphingobacteriales Flexibacteraceae Microscilla Microscilla marina BACTERIAL Microscilla marina ATCC 23134 ABI ATCC 23134 Genome BACTEROIDETES Draft incomplete Filament-shaped, Motile, Aerobe Environmental, MMI None Marine Marine aquarium outflow USA 41 Public Gi00853 001213_GCAT 313606 13411 640196209 9771 8319 NZ_AAWS00000000 NCBI, JCVI J Craig Venter Institute, Kalmar Univ Moore Foundation Haygood M http://mbrd.ucsd.edu/researchers/people_detail.cfm?state=%26%29%2E%3B%2ET%5C%3FX%0A Bacteria Proteobacteria Pseudomonadales Moraxellaceae Moraxella Moraxella bovis BACTERIAL Moraxella bovis Epp63 ABI, 454 25x Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Coccus-shaped Medical, Animal Pathogen, Cattle Pathogen, Dairy industry Keratoconjunctivitis Host USA Public Gi00948 001214_GCAT 476 16829 2000 BCM-HGSC BCM-HGSC USDA Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Bacteria Proteobacteria Pseudomonadales Moraxellaceae Moraxella Moraxella catarrhalis BACTERIAL Moraxella catarrhalis Genome PROTEOBACTERIA-GAMMA incomplete Aerobe, Pathogen, Nonmotile Medical, Fish Pathogen Furunculosis Host 37 Canada Public Gi00377 001215_GCAT 480 13412 1900 NRC-IMB NRC Bacteria Proteobacteria Pseudomonadales Moraxellaceae Moraxella Moraxella catarrhalis BACTERIAL Moraxella catarrhalis Genome PROTEOBACTERIA-GAMMA complete Aerobe, Pathogen Medical, Fish Pathogen Furunculosis Aquatic USA Proprietary Gi00378 001216_GCAT 480 PathoGenome-TM Genome Therapeutics Bacteria Proteobacteria Alteromonadales Moritellaceae Moritella Moritella sp. PE36 BACTERIAL Moritella sp PE36 Genome PROTEOBACTERIA-GAMMA Draft incomplete Piezophile, Heterotroph Environmental, MMI None Marine, Deep sea Pacific Ocean at 288Km from the coast of San Diego USA 42 Public Gi00854 001217_GCAT 58051 13535 640963028 5164 4695 NZ_ABCQ00000000 JCVI J Craig Venter Institute, Scripps Institute of Oceanography Moore Foundation, NSF Yayanos AA http://mbrd.ucsd.edu/labpages/yayanos_lab.cfm Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium abscessus BACTERIAL Mycobacterium abscessus CIP 104536 ABI 12x ATCC 19977 Genome ACTINOBACTERIA incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile, Nonsporulating Medical, Human Pathogen Broncho-pulmonary infection, Respiratory infection Host 37 France Public Gi00949 001218_GCAT 36809 15691 Genoscope Genoscope Barbe V vbarbe@genoscope.cns.fr Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium bovis BACTERIAL Mycobacterium bovis BCG Moreau RDJ Genome ACTINOBACTERIA incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile, Nonsporulating Medical, Animal Pathogen, Cattle Pathogen, Human Pathogen Tuberculosis Host Brazil Public Gi01688 001219_GCAT 413996 18279 4400 FENAM FAP Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium chelonae BACTERIAL Mycobacterium chelonae CIP 104535 ABI 12x ATCC 35752 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile, Nonsporulating Medical, Human Pathogen Broncho-pulmonary infection, Respiratory infection Host 37 France Public Gi00950 001220_GCAT 1774 15692 Genoscope Genoscope Barbe V vbarbe@genoscope.cns.fr Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium marinum BACTERIAL Mycobacterium marinum M Genome ACTINOBACTERIA complete Pathogen, Rod-shaped, Nonmotile, Aerobe Medical, Human Pathogen, Animal Pathogen Tuberculosis Host International 65 Public Gi00382 001223_GCAT 216594 6000 NCBI, Sanger Institute Sanger Institute, Univ of Washington, Institut Pasteur Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium africanum BACTERIAL Mycobacterium africanum GM041182 Genome ACTINOBACTERIA incomplete Pathogen, Nonmotile, Aerobe Medical, Human Pathogen, Cattle Pathogen, Animal Pathogen Tuberculosis, Pulmonary tuberculosis Host United Kingdom Public Gi01689 001224_GCAT 33894 3283 Sanger Institute Sanger Institute Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium canettii BACTERIAL Mycobacterium canetti CIPT140010059 Genome ACTINOBACTERIA incomplete Pathogen, Nonmotile, Aerobe Medical, Human Pathogen, Cattle Pathogen, Animal Pathogen Tuberculosis, Pulmonary tuberculosis Host Tuberculosis patients in East Africa United Kingdom Public Gi01992 002621_GCAT 78331 Sanger Institute Sanger Institute Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium microti BACTERIAL Mycobacterium microti OV254 Genome ACTINOBACTERIA incomplete Pathogen, Nonmotile, Aerobe Medical, Human Pathogen, Cattle Pathogen, Animal Pathogen Tuberculosis Host European Consortium Public Gi00383 001225_GCAT 1806 12623 4300 Institut Pasteur, Sanger Institute Institut Pasteur, Sanger Institute DEFRA Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis 210 Genome ACTINOBACTERIA complete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host Tuberculosis outbreak in Texas USA Public Gi00385 001226_GCAT 164513 273 4447 TIGR NIH-NIAID Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis A1 Genome ACTINOBACTERIA incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi01204 001228_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis C ABI 6.7x Genome ACTINOBACTERIA Draft incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile, Nonsporulating Medical, Human Pathogen Tuberculosis Host Drug-susceptible strain that has caused a large proportion of new tuberculosis cases in New York USA 65 Public Gi01205 001229_GCAT 348776 16172 638341130 4276 4039 NZ_AAKR00000000 NCBI, Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis Ekat-4 Genome ACTINOBACTERIA incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi01227 001230_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis Haarlem ABI 14.57x Genome ACTINOBACTERIA Draft incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host 37 USA 65.3 Public Gi01206 001231_GCAT 395095 17353 4347 NZ_AASN00000000 NCBI, Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis Peruvian1 Genome ACTINOBACTERIA incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi01207 001232_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis Peruvian2 Genome ACTINOBACTERIA incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi01208 001233_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis W-148 Genome ACTINOBACTERIA incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi01209 001234_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis K37 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02496 003222_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis 4783_04 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02496 003223_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis GM_1503 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02498 003224_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis SG1 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02499 003225_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis 91_0079 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02500 003226_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis K49 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02501 003227_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis K100 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02502 003228_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis 94_M4241A Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02503 003229_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis M4100A Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02504 003230_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis 98_1833 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02505 003231_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis 93_1117 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02506 003232_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis 02_1987 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02507 003233_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis 00_1695 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02508 003234_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis T67 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02509 003235_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis T85 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02510 003236_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis T17 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02511 003237_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis T46 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02512 003238_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis T92 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02513 003239_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis 95_0545 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02514 003240_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis T83 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02515 003241_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis K21 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02516 003242_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis K67 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02517 003243_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis K93 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02518 003244_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis EAS054 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02519 003245_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis 11821_03 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02520 003246_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis 5444_04 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02521 003247_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis CPHL_A Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02521 003247_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis K85 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02522 003248_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis 4141_04 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02523 003249_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis GM_0981 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02524 003250_GCAT 1773 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium canettii BACTERIAL Mycobacterium canettii K116 Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile Medical, Human Pathogen Tuberculosis Host USA Public Gi02525 003251_GCAT 78331 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis KZN 605 (XDR) Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile, Nonsporulating, Mesophile Medical, Human Pathogen Tuberculosis Host 37 Patient in KwaZulu-Natal, South Africa USA Public Gi01904 002537_GCAT 478435 21057 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis KZN 1435 (MDR) Genome ACTINOBACTERIA incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile, Mesophile, Nonsporulating Medical, Human Pathogen Tuberculosis Host 37 Patient in KwaZulu-Natal, South Africa USA Public Gi01905 002538_GCAT 478434 21055 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis KZN 4207 (DS) Genome ACTINOBACTERIA incomplete incomplete Pathogen, Aerobe, Chemoorganotroph, Rod-shaped, Nonmotile, Nonsporulating, Mesophile Medical, Human Pathogen Tuberculosis Host 37 Patient in KwaZulu-Natal, South Africa USA Public Gi01906 002539_GCAT 478433 21053 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium ulcerans BACTERIAL Mycobacterium ulcerans Genome ACTINOBACTERIA incomplete Pathogen Medical, Human Pathogen Buruli ulcer Host USA Public Gi00951 001236_GCAT 1809 4400 CUGI Clemson Univ Clemson Univ CUGI jtmkns@clemson.edu Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma agalactiae BACTERIAL Mycoplasma agalactiae 5632 Genome FIRMICUTES incomplete Pathogen, Sphere-shaped, Nonmotile, Facultative Medical, Animal Pathogen Mycoplasmosis, Pneumonia, Mastitis, Arthritis Host France Public Gi01078 001238_GCAT 347258 16096 950 Genoscope Genoscope Barbe V vbarbe@genoscope.cns.fr Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma alligatoris BACTERIAL Mycoplasma alligatoris Genome FIRMICUTES incomplete Pathogen Medical, Animal Pathogen Mycoplasmosis Host USA Public Gi00387 001239_GCAT 47687 13414 Univ of Florida NIH Brown RD brownd@mail.vetmed.ufl.edu Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma amphoriforme BACTERIAL Mycoplasma amphoriforme A39 NCTC 11740, ATCC BAA-992 Genome FIRMICUTES incomplete Pathogen Medical, Human Pathogen Respiratory infection Host Sputum of an immunodeficient patient with recurrent bronchitis United Kingdom Public Gi01369 001240_GCAT 273136 1000 Sanger Institute Sanger Institute Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma arthritidis BACTERIAL Mycoplasma arthritidis 158L3-1 Genome FIRMICUTES complete Pathogen, Nonmotile, Nonsporulating, Facultative, Sphere-shaped Medical, Human Pathogen, Animal Pathogen Arthritis Host 37 USA Public Gi00388 001241_GCAT 243272 1422 NCBI TIGR NIH Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma bovis BACTERIAL Mycoplasma bovis Donetta PG45 Genome FIRMICUTES complete Pathogen, Facultative, Sphere-shaped, Nonsporulating Medical, Animal Pathogen, Cattle Pathogen Respiratory disease, Mastitis, Arthritis Host 37 USA Public Gi00575 001242_GCAT 289397 12525 TIGR, Univ of Missouri USDA Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma capricolum BACTERIAL Mycoplasma capricolum Genome FIRMICUTES incomplete Pathogen, Facultative, Nonmotile, Nonsporulating, Sphere-shaped Medical, Animal Pathogen, Goat Pathogen Caprine mycoplasma, Arthritis, Septicemia Host 37 Germany Public Gi00389 001243_GCAT 2095 1200 Max Planck Institute Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma capricolum BACTERIAL Mycoplasma capricolum capricolum Genome FIRMICUTES incomplete Pathogen, Facultative, Nonmotile, Nonsporulating, Sphere-shaped Medical, Animal Pathogen, Goat Pathogen Caprine mycoplasma, Arthritis, Septicemia Host 37 USA Public Gi00577 001244_GCAT 40479 1200 Institute for Systems Biology USDA Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma capricolum BACTERIAL Mycoplasma capricolum 959 Genome FIRMICUTES incomplete Pathogen, Facultative, Nonmotile, Nonsporulating, Sphere-shaped Medical, Animal Pathogen, Goat Pathogen Caprine mycoplasma, Arthritis, Septicemia Host 37 USA Public Gi02337 003059_GCAT 2095 96 George Mason Univ Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma gallisepticum BACTERIAL Mycoplasma gallisepticum #1 Genome FIRMICUTES incomplete incomplete Pathogen, Facultative, Nonmotile, Nonsporulating, Sphere-shaped, Mesophile Medical, Animal Pathogen Respiratory infection Host 37 12-Year Epizootic in House Finche populations starting in Washington, D. C. in 1994 USA Public Gi02347 003073_GCAT 2096 Univ of Connecticut NSF Geary S steven.geary@uconn.edu Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma gallisepticum BACTERIAL Mycoplasma gallisepticum #2 Genome FIRMICUTES incomplete incomplete Pathogen, Facultative, Nonmotile, Nonsporulating, Sphere-shaped, Mesophile Medical, Animal Pathogen Respiratory infection Host 37 12-Year Epizootic in House Finche populations starting in Washington, D. C. in 1994 USA Public Gi02348 003074_GCAT 2096 Univ of Connecticut NSF Geary S steven.geary@uconn.edu Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma gallisepticum BACTERIAL Mycoplasma gallisepticum #3 Genome FIRMICUTES incomplete incomplete Pathogen, Facultative, Nonmotile, Nonsporulating, Sphere-shaped, Mesophile Medical, Animal Pathogen Respiratory infection Host 37 12-Year Epizootic in House Finche populations starting in Washington, D. C. in 1994 USA Public Gi02349 003075_GCAT 2096 Univ of Connecticut NSF Geary S steven.geary@uconn.edu Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma gallisepticum BACTERIAL Mycoplasma gallisepticum #4 Genome FIRMICUTES incomplete incomplete Pathogen, Facultative, Nonmotile, Nonsporulating, Sphere-shaped, Mesophile Medical, Animal Pathogen Respiratory infection Host 37 12-Year Epizootic in House Finche populations starting in Washington, D. C. in 1994 USA Public Gi02350 003076_GCAT 2096 Univ of Connecticut NSF Geary S steven.geary@uconn.edu Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma gallisepticum BACTERIAL Mycoplasma gallisepticum #5 Genome FIRMICUTES incomplete incomplete Pathogen, Facultative, Nonmotile, Nonsporulating, Sphere-shaped, Mesophile Medical, Animal Pathogen Respiratory infection Host 37 12-Year Epizootic in House Finche populations starting in Washington, D. C. in 1994 USA Public Gi02351 003077_GCAT 2096 Univ of Connecticut NSF Geary S steven.geary@uconn.edu Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma fermentans BACTERIAL Mycoplasma fermentans Genome FIRMICUTES incomplete Pathogen, Sphere-shaped, Nonmotile, Nonsporulating, Facultative Medical, Human Pathogen Respiratory disease, Arthritis Host Taiwan Public Gi00390 001245_GCAT 2115 13415 1100 Yang-Ming Univ, Taiwan Yang-Ming Univ, Taiwan Shiao M-S msshiao@vghtpe.gov.tw Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma fermentans BACTERIAL Mycoplasma fermentans Genome FIRMICUTES incomplete Pathogen, Sphere-shaped, Motile, Facultative Medical, Human Pathogen Urogenital infection, Respiratory infection Host Germany 31 Public Gi01520 001247_GCAT 2115 900 Goettingen Genomics Laboratory, Hebrew Univ Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma genitalium BACTERIAL Mycoplasma genitalium G-37 454 ATCC 33530 Genome FIRMICUTES Draft incomplete Facultative, Pathogen, Motile, Nonsporulating, Parasite Medical, Human Pathogen, Animal Pathogen Urogenital infection, Respiratory infection, Non-gonococcal urethritis Urogenital tract, Host Urethral specimen from a male patient with nongonococcal urethritis USA 31.7 Public Gi01392 001248_GCAT 243273 13924 638341133 560 858 1 0 NZ_AAGX00000000 NCBI 454 Life Sciences Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma haemofelis BACTERIAL Mycoplasma haemofelis Genome FIRMICUTES incomplete Pathogen, Nonmotile, Coccus-shaped Medical, Animal Pathogen Haemobartonellosis, Feline infectious anemia Host USA Public Gi00391 001249_GCAT 29501 13416 Univ of Illinois Messick JB jmessick@cvm.uiuc.edu Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma hominis BACTERIAL Mycoplasma hominis PG21 Genome FIRMICUTES incomplete Pathogen Medical, Human Pathogen Genital infection Host France 29 Public Gi01079 001250_GCAT 2098 700 Genoscope Genoscope Barbe V vbarbe@genoscope.cns.fr Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma mycoides BACTERIAL Mycoplasma mycoides mycoides LC Genome FIRMICUTES incomplete Pathogen, Sphere-shaped, Nonsporulating, Nonmotile, Anaerobe Medical, Animal Pathogen Mammitis, Pneumonia, Arthritis Host 37 France Public Gi01080 001251_GCAT 44100 1200 Genoscope Genoscope Barbe V vbarbe@genoscope.cns.fr Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma mycoides BACTERIAL Mycoplasma mycoides mycoides LC GM12 Genome FIRMICUTES Draft incomplete Pathogen, Sphere-shaped, Nonsporulating, Nonmotile, Anaerobe Medical, Animal Pathogen Mammitis, Pneumonia, Arthritis Host 37 USA 23.8 Public Gi01956 002582_GCAT 436113 19245 1100 NZ_AAZK00000000 J Craig Venter Institute Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma orale BACTERIAL Mycoplasma orale Genome FIRMICUTES incomplete Pathogen Medical, Human Pathogen Respiratory infection Oral microflora, Host Taiwan Public Gi00578 001252_GCAT 2121 13417 675 Yang-Ming Univ, Taiwan Yang-Ming Univ, Taiwan Shiao M-S msshiao@vghtpe.gov.tw Bacteria Proteobacteria Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus BACTERIAL Myxococcus xanthus. Genome PROTEOBACTERIA-DELTA incomplete Obligate aerobe, Motile, Chemoorganotroph, Rod-shaped, Sporulating Biotechnological None Soil USA Public Gi00396 001253_GCAT 34 9450 7500 Cereon Cereon Genomics, Stanford Univ Archaea Euryarchaeota Halobacteriales Halobacteriaceae Natrialba Natrialba asiatica ARCHAEAL Natrialba asiatica Genome EURYARCHAEOTA-HALOBACTERIA incomplete Halophile, Aerobe, Motile, Nonsporulating, Rod-shaped Biotechnological None Aquatic Beach in Japan USA Public Gi00719 001254_GCAT 64602 13382 UMBI, Institute for Systems Biology NSF Goo Y ygoo@systemsbiology.org Bacteria Proteobacteria Nautiliales Nautiliaceae Nautilia Nautilia sp. Am-H BACTERIAL Nautilia sp Am-H Genome PROTEOBACTERIA-EPSILON Draft incomplete Carbon cycle, Chemoautotroph, Motile, Anaerobe, Rod-shaped, Thermophile Environmental, Biotechnological None Aquatic, Hydrothermal vent 45 Epidermis of Alvinella pompejana USA Public Gi00397 001255_GCAT 244787 13240 Univ of Delaware, TIGR NSF Cary C caryc@udel.edu Bacteria Proteobacteria Neisseriales Neisseriaceae Neisseria Neisseria lactamica BACTERIAL Neisseria lactamica ST-640 Genome PROTEOBACTERIA-BETA incomplete Aerobe, Non-Pathogen None United Kingdom Public Gi00399 001256_GCAT 486 2300 Sanger Institute Sanger Institute, Univ of Oxford Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis BACTERIAL Neisseria meningitidis ST-53 a-14 Genome PROTEOBACTERIA-BETA complete Pathogen, Coccus-shaped, Aerobe Medical, Human Pathogen Meningitis, Septicemia Host Germany Public Gi01081 001257_GCAT 487 2146 1960 Univ of Wuerzburg, MWG-Biotech Frosch M mfrosch@hygiene.uni-wuerzburg.de Bacteria Proteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis BACTERIAL Neisseria meningitidis ST-136 Genome PROTEOBACTERIA-BETA incomplete Pathogen, Coccus-shaped, Aerobe Medical, Human Pathogen Meningitis, Septicemia Host Germany Public Gi01082 001258_GCAT 487 Univ of Wuerzburg, MWG-Biotech Frosch M mfrosch@hygiene.uni-wuerzburg.de Bacteria Proteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis BACTERIAL Neisseria meningitidis ST-22 Genome PROTEOBACTERIA-BETA incomplete Pathogen, Coccus-shaped, Aerobe Medical, Human Pathogen Meningitis, Septicemia Host Germany Public Gi01296 001259_GCAT 487 Univ of Wuerzburg, MWG-Biotech Frosch M mfrosch@hygiene.uni-wuerzburg.de Bacteria Proteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis BACTERIAL Neisseria meningitidis ST-60 Genome PROTEOBACTERIA-BETA incomplete Pathogen, Coccus-shaped, Aerobe Medical, Human Pathogen Meningitis, Septicemia Host Germany Public Gi01297 001260_GCAT 487 Univ of Wuerzburg, MWG-Biotech Frosch M mfrosch@hygiene.uni-wuerzburg.de Bacteria Proteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis BACTERIAL Neisseria meningitidis serogroup C, 8013 Genome PROTEOBACTERIA-BETA incomplete Pathogen, Aerobe, Nonmotile Medical, Human Pathogen Meningitis, Septicemia France Public Gi00401 001261_GCAT 135720 2100 Institut Pasteur Institut Pasteur Glaser P pglaser@pasteur.fr Bacteria Proteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis BACTERIAL Neisseria meningitidis Genome PROTEOBACTERIA-BETA complete Pathogen, Aerobe, Nonmotile Medical, Human Pathogen Meningitis, Septicemia USA Proprietary Gi00400 001262_GCAT 487 PathoGenome-TM Genome Therapeutics Bacteria Proteobacteria Rhizobiales Bradyrhizobiaceae Nitrobacter Nitrobacter sp. Nb-311A BACTERIAL Nitrobacter sp Nb-311A ABI Genome PROTEOBACTERIA-ALPHA Draft incomplete Nitrite-oxidizer, Rod-shaped, Facultative, Lithotroph Environmental, Wastewater treatment, MMI None Aquatic, Soil, Surface water, Marine Surface water in the Eastern Atlantic Ocean USA 62 Public Gi00855 001263_GCAT 314253 13538 638341134 4104 4256 NZ_AAMY00000000 NCBI, JCVI J Craig Venter Institute, Woods Hole Oceanographic Institute Moore Foundation Waterbury JB http://www.whoi.edu/scitech/staff.jsp?id=4 Bacteria Proteobacteria Chromatiales Ectothiorhodospiraceae Nitrococcus Nitrococcus mobilis BACTERIAL Nitrococcus mobilis Nb-231 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Nitrite-oxidizer, Sphere-shaped, Motile, Aerobe, Chemolithotroph Environmental, MMI None Surface water, Marine Equatorial Pacific surface waters USA 60 Public Gi00856 001264_GCAT 314278 13475 638341135 3617 3503 NZ_AAOF00000000 NCBI, JCVI J Craig Venter Institute, Woods Hole Oceanographic Institute Moore Foundation Waterbury JB http://www.whoi.edu/scitech/staff.jsp?id=4 Bacteria Proteobacteria Chromatiales Chromatiaceae Nitrosococcus Nitrosococcus oceani BACTERIAL Nitrosococcus oceani AFC-27 (= Nc9) Genome PROTEOBACTERIA-GAMMA incomplete Ammonia-oxidizer, Motile, Aerobe, Chemolithotroph Environmental, MMI None Marine, Surface water 1964 in Barbados Harbor from surface waters USA Public Gi00857 001265_GCAT 314279 13547 5000 JCVI J Craig Venter Institute, Univ of Louisville Moore Foundation Klotz MG http://www.louisville.edu/%7emgklot01/klotz.htm Bacteria Proteobacteria Chromatiales Chromatiaceae Nitrosococcus Candidatus Nitrosococcus watsoni BACTERIAL Nitrosococcus sp Genome PROTEOBACTERIA-GAMMA incomplete Ammonia-oxidizer, Nitrifying, Motile, Aerobe, Chemolithotroph Biotechnological, Environmental None Aquatic USA Public Gi00769 001266_GCAT 1227 Univ of Louisville, TIGR NSF Klotz MG http://mgklotz.com/ Bacteria Proteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas sp. BACTERIAL Nitrosomonas sp Genome PROTEOBACTERIA-BETA incomplete Ammonia-oxidizer, Nitrifying, Motile, Aerobe, Lithotroph Biotechnological, Environmental None Aquatic USA Public Gi00770 001267_GCAT 42353 Univ of Louisville, TIGR NSF Klotz MG http://mgklotz.com/ Bacteria Proteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas sp. 17 BACTERIAL Nitrosomonas sp 17 Genome PROTEOBACTERIA-BETA incomplete Ammonia-oxidizer, Nitrifying, Motile, Aerobe, Lithotroph Environmental, Biotechnological, MMI None Marine Galapagos Islands in Ecuador USA Public Gi00858 001268_GCAT 314272 13517 JCVI J Craig Venter Institute, Woods Hole Oceanographic Institute Moore Foundation Waterbury JB http://www.whoi.edu/scitech/staff.jsp?id=4 Bacteria Proteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas oligotropha BACTERIAL Nitrosomonas oligotropha Nm45 Genome PROTEOBACTERIA-BETA incomplete Oligotroph, Nitrifying, Lithotroph Biotechnological None Soil USA Public Gi01025 001269_GCAT 42354 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas sp. BACTERIAL Nitrosomonas sp IS-79 Genome PROTEOBACTERIA-BETA incomplete Oligotroph, Nitrifying, Lithotroph Biotechnological None Soil USA Public Gi01026 001270_GCAT 42353 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Nitrospirae Nitrospirales Nitrospiraceae Nitrospira Nitrospira marina BACTERIAL Nitrospira marina Nb-295 Genome NITROSPIRAE incomplete Nitrite-oxidizer Environmental, MMI None Marine, Surface water Surface waters of the Gulf of Maine USA Public Gi00859 001271_GCAT 35815 13446 JCVI J Craig Venter Institute, Woods Hole Oceanographic Institute Moore Foundation Waterbury JB http://www.whoi.edu/scitech/staff.jsp?id=4 Bacteria Nitrospirae Nitrospirales Nitrospiraceae Nitrospira Candidatus Nitrospira defluvii BACTERIAL Nitrospira defluvii Genome NITROSPIRAE incomplete Nitrite-oxidizer Environmental None Aquatic, Surface water France Public Gi01879 001272_GCAT 330214 Univ of Vienna Univ of Vienna, Genoscope Daims H http://www.microbial-ecology.net/daims.asp Bacteria Proteobacteria Desulfobacterales Nitrospinaceae Nitrospina Nitrospina gracilis BACTERIAL Nitrospina gracilis Nb-211 Genome PROTEOBACTERIA-DELTA incomplete Nitrite-oxidizer, Rod-shaped, Facultative Environmental, Wastewater treatment, MMI None Marine, Surface water Surface water of the western Atlantic Ocean USA Public Gi00860 001273_GCAT 314274 13445 JCVI J Craig Venter Institute, Woods Hole Oceanographic Institute Moore Foundation Waterbury JB http://www.whoi.edu/scitech/staff.jsp?id=4 Bacteria Cyanobacteria Nostocales Nostocaceae Nodularia Nodularia spumigena BACTERIAL Nodularia spumigena CCY9414 ABI Genome CYANOBACTERIA Draft incomplete Aerobe, Filament-shaped, Nitrogen fixation, Toxic, Bloom forming Environmental, MMI None Surface water, Marine Surface waters of the Baltic Sea USA 42 Public Gi00861 001274_GCAT 313624 13447 639857037 5314 4860 NZ_AAVW00000000 NCBI, JCVI J Craig Venter Institute, Netherlands Institute of Ecology Moore Foundation Stal LJ http://www.nioo.nl/PPAGES/lstal/ Bacteria Cyanobacteria Nostocales Nostocaceae Nostoc Nostoc punctiforme BACTERIAL Nostoc punctiforme ATCC 29133 ABI ATCC 29133, PCC 73102 Genome CYANOBACTERIA Draft incomplete Carbon dioxide fixation, Nitrogen fixation, Acidophile, Filament-shaped, Motile, Aerobe Biotechnological, Environmental None Aquatic, Soil USA 41 Public Gi00414 001275_GCAT 63737 216 638341137 9020 7672 NZ_AAAY00000000 NCBI, Joint Genome Institute, report Joint Genome Institute, Univ of Louisville DOE Chain P chain2@llnl.gov Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Oceanicola Oceanicola batsensis BACTERIAL Oceanicola batsensis HTCC2597 ABI HTCC2597 Genome PROTEOBACTERIA-ALPHA Draft incomplete Aerobe, Chemoheterotroph, Nonmotile, Rod-shaped Environmental, MMI None Marine Seawater collected from a depth of 10m at the Bermuda Atlantic Time Series station in the Sargasso Sea USA 67.3 Public Gi00862 001276_GCAT 252305 13449 638341139 4436 4212 NZ_AAMO00000000 NCBI, Oregon State Univ, JCVI J Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Oceanicola Oceanicola granulosus BACTERIAL Oceanicola granulosus HTCC2516 ABI HTCC2516 Genome PROTEOBACTERIA-ALPHA Draft incomplete Aerobe, Chemoheterotroph, Nonmotile, Rod-shaped Environmental, MMI None Marine Seawater collected from a depth of 10m at the Bermuda Atlantic Time Series station in the Sargasso Sea USA 70 Public Gi00863 001277_GCAT 314256 13450 638341140 4039 3792 NZ_AAOT00000000 Oregon State Univ, NCBI, JCVI J Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm Bacteria Proteobacteria Rhodobacterales Hyphomonadaceae Oceanicaulis Oceanicaulis alexandrii BACTERIAL Oceanicaulis alexandrii HTCC2633 ABI HTCC2633 Genome PROTEOBACTERIA-ALPHA Draft incomplete Aerobe, Rod-shaped Environmental, MMI None Marine Seawater collected from 10m depth at the Bermuda Atlantic Time Series station in the Sargasso Sea USA 64 Public Gi00864 001278_GCAT 314254 13448 638341138 3166 3029 NZ_AAMQ00000000 Oregon State Univ, NCBI, JCVI J Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm Bacteria Proteobacteria Oceanospirillales Oceanospirillaceae Oceanobacter Oceanobacter sp. RED65 BACTERIAL Oceanobacter sp. RED65 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Aerobe, Rod-shaped, Nonsporulating, Motile Environmental, MMI None Red Sea, Marine Red Sea at a depth of 1 m USA 45 Public Gi00865 001279_GCAT 207949 13562 638341141 3519 3314 NZ_AAQH00000000 NCBI, JCVI J Craig Venter Institute, Kalmar Univ Moore Foundation Pinhassi J http://halia.hik.se/start.jsp?page=members/jarone%20pinhassi Bacteria Proteobacteria Oceanospirillales Oceanospirillaceae Neptuniibacter Neptuniibacter caesariensis BACTERIAL Neptuniibacter (Oceanospirillum) caesariensis MED92 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Motile, Helical-shaped, Aerobe Environmental, MMI None Marine 25 - 32 Eastern Mediterranean Sea at a depth of 1m USA 47 Public Gi00866 001280_GCAT 207954 13561 638341142 3873 3688 NZ_AAOW00000000 NCBI, JCVI J Craig Venter Institute, Kalmar Univ Moore Foundation Pinhassi J http://halia.hik.se/start.jsp?page=members/jarone%20pinhassi Bacteria Proteobacteria Rhizobiales Brucellaceae Ochrobactrum Ochrobactrum anthropi BACTERIAL Ochrobactrum anthropi Genome PROTEOBACTERIA-ALPHA incomplete Pathogen, Rod-shaped, Motile, Aerobe Medical, Human Pathogen Meningitis Host, Soil, Sludge USA Public Gi00415 001281_GCAT 529 13383 4800 2 Clemson Univ Tomkins JP jtmkns@clemson.edu Bacteria Firmicutes Lactobacillales Leuconostocaceae Oenococcus Oenococcus oeni BACTERIAL Oenococcus (Leuconostoc) oeni ATCC BAA-1163 ATCC BAA-1163 Genome FIRMICUTES Draft incomplete Facultative, Coccus-shaped, Nonsporulating, Nonmotile Food industry, Biotechnological None Marsh 22 - 26 France 37.9 Public Gi00416 001282_GCAT 379360 16668 639857018 1800 1398 NZ_AAUV00000000 NCBI Genome Express, INRA ANVAR Bacteria Proteobacteria unclassified unclassified unclassified Olavius algarvensis sulfate-reducing endosymbiont MICROBIAL Olavius algarvensis (gutless worm) microbiome from Mediterranean sea Metagenome ENDOBIOTIC-WORMS complete complete Sulfate reducer, Symbiont Biotechnological None Sediment Silicate sediments in a bay off Capo di Sant' Andrea, Elba Italy USA Public Gm00017 001283_GCAT 146479 17779 29883 21154 AASZ00000000 IMG/M, IMG/M, IMG/M, IMG/M, Joint Genome Institute Joint Genome Institute, Max Planck Institute DOE Nature 443, 950-5 October 19, 2006 Dubilier N ndubilie@mpi-bremen.de unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil microbial communities from Alaska Metagenome ENVIRONMENTAL-SOIL incomplete Evolutionary, Environmental None Soil USA Public Gm00019 001284_GCAT 8000 Joint Genome Institute DOE Handelsman Jo http://www.plantpath.wisc.edu/fac/joh/joh.htm unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine Bacterioplankton communities from Antarctic Metagenome ENVIRONMENTAL-MARINE incomplete Psychrophile Evolutionary, Environmental None Marine, Antarctic Late winter and summer Antarctic waters USA Public Gm00006 001285_GCAT 12000 Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Sponge microbiome from Conch Reef, Key Largo Florida Metagenome ENDOBIOTIC incomplete incomplete Evolutionary, Environmental None Aquatic, Host Conch Reef at Key Largo in Florida USA Public Gm00014 001286_GCAT Center of Marine Biotechnology, Indiana Univ NSF Hill R http://www.umbi.umd.edu/%7Ecomb/faculty/hill/hill.html unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial communities from Monterey Bay Metagenome ENVIRONMENTAL-MARINE incomplete Evolutionary, Environmental None Marine Monterey Bay California USA Public Gm00018 001287_GCAT MIT, Joint Genome Institute NSF DeLong EF http://web.mit.edu/be/people/delong.htm unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Oral microbiome of Human Homo sapiens Metagenome ENDOBIOTIC-HUMAN incomplete incomplete Medical None Host, Oral microflora USA Public Gm00029 001288_GCAT TIGR NIH-NIDCR unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Aquatic archaeal communities from Nevada Hot Springs Metagenome ENVIRONMENTAL-EXTREME incomplete Thermophile Evolutionary, Environmental None Nevada hot springs USA Public Gm00030 001289_GCAT Univ of Georgia NSF unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial community from Georgetown SC saltmarsh estuary Metagenome ENVIRONMENTAL-MARINE incomplete Evolutionary, Environmental None Marine North Inlet Saltmarsh Estuary near Georgetown SC USA Public Gm00031 001290_GCAT Purdue Univ NSF Lovell CR http://www.biol.sc.edu/faculty/lovell.html unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine oligotrophic communities from Northwestern Sargasso Sea Metagenome ENVIRONMENTAL-MARINE incomplete Evolutionary, Environmental None Marine Northwestern Sargasso Sea off Bermuda USA Public Gm00032 001291_GCAT UCSB, Oregon State Univ NSF Carlson C http://www.lifesci.ucsb.edu/eemb/faculty/carlson/ unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Aquatic microbial community from Yellowstone Hot Springs Red Layer Microbial Observatory Metagenome ENVIRONMENTAL-EXTREME incomplete Evolutionary, Environmental None Extreme, Hot spring 45 - 60 Yellowstone National Park USA Public Gm00033 001292_GCAT Western Oregon Univ NSF Boomer S boomers@wou.edu unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Aquatic microbial communities from Cedars Ultrabasic Springs Metagenome ENVIRONMENTAL-AQUATIC incomplete Environmental None USA Public Gm00035 001294_GCAT Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Gut viriome of Human Metagenome ENDOBIOTIC-VIRAL incomplete Medical USA Public Gm00036 001295_GCAT SDSU, Univ of Southern California NSF Rohwer F http://phage.sdsu.edu/ unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Thermal and Saline microbial communities from China and UK Metagenome ENVIRONMENTAL-EXTREME incomplete Environmental USA Public Gm00037 001296_GCAT Univ of Leicester Heaphy S http://www.le.ac.uk/iii/sh1/sh1.html unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Aquatic crenarchaeal communities from the Hishikari Goldmine Hot Springs subsurface hot water Metagenome ENVIRONMENTAL-EXTREME incomplete Thermophile Environmental None Aquatic Subsurface hot water stream of the Hishikari gold mine in Japan Japan Public Gm00038 001297_GCAT JAMSTEC Nunoura T takuron@jamstec.go.jp unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Gut microbiome of Human healthy adults Homo sapiens Metagenome ENDOBIOTIC-HUMAN incomplete incomplete None International Public Gm00039 001298_GCAT International Collaboration Ehrlich D Dusko.Ehrlich@jouy.inra.fr unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Sulfur spring microbial communities from Zodletone Oklahoma Metagenome ENVIRONMENTAL-AQUATIC incomplete Mesophile, Anaerobe Environmental None Aquatic, Sulfur spring, Sediment Anaerobic sediments of a mesophilic sulfur spring USA Public Gm00040 001299_GCAT Univ of Oklahoma Elshahed MS Mostafa@ou.edu unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Aquatic hyperthermophilic communities from Arctic Springs Metagenome ENVIRONMENTAL-EXTREME incomplete Hyperthermophile Environmental None Norway Public Gm00041 001300_GCAT Univ of Bergen Schleper C Christa.Schleper@bio.uib.no unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Aquatic microbial communities from Drinking-water networks Metagenome ENVIRONMENTAL-AQUATIC complete Environmental None Aquatic three biofilm samples were collected within the drinking water networks of a town in the northwestern part of Germany in the state of North Rhine-Westphalia Germany Public Gm00042 001301_GCAT Univ of Goettingen Appl Environ Microbiol 69, 7298-309 December 1, 2003 Streit WR wstreit@gwdg.de unclassified unclassified unclassified unclassified unclassified marine metagenome MICROBIAL Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) Metagenome ENVIRONMENTAL-MARINE complete complete Biotechnological, Environmental, Ecological, Bioremediation None Marine North Pacific Ocean at depths of 10m to 4000m at the Hawaii open-ocean time-series station USA Public Gm00054 001323_GCAT 408172 16339 2000000 ABEF00000000 CAMERA Joint Genome Institute DOE Science 311, 496-503 January 27, 2006 DeLong EF delong@mit.edu unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Aquatic microbial communities from Soudan Mine in Minnesota 454 Metagenome ENVIRONMENTAL-EXTREME incomplete Biotechnological, Environmental None Groundwater, Aquatic Groundwater seeping from the Soudan Mine in Minnesota USA Public Gm00043 001303_GCAT 17725 SDSU BMC Genomics 7, 57 March 20, 2006 Edwards RA redwards@salmonella.org unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Endophytic microbiomes from Poplar Poplar Metagenome ENDOBIOTIC-PLANTS incomplete incomplete Biotechnological, Agricultural None Host USA Public Gm00045 001304_GCAT 37300 Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Endophytic microbiome from Rice Rice Metagenome ENDOBIOTIC-PLANTS incomplete incomplete Biotechnological, Agricultural None Host USA Public Gm00046 001305_GCAT 100000 Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Benzene-Degrading Methanogenic communities Metagenome ENVIRONMENTAL incomplete Methanogen, Benzene degradation, Lithotroph Biotechnological, Bioremediation, Environmental None Soil USA Public Gm00047 001306_GCAT 192000 Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Aquatic dechlorinating community (KB-1) Metagenome ENVIRONMENTAL-AQUATIC incomplete Dechlorinates Tetrachloroethene, Anaerobe Biotechnological, Bioremediation, Environmental None Groundwater, Aquatic USA Public Gm00048 001307_GCAT 200000 Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Wastewater treatment plant Plasmid pool Metagenome ENVIRONMENTAL-AQUATIC incomplete Biotechnological, Environmental None Wastewater treatment plant, Aquatic USA Public Gm00049 001308_GCAT 120000 Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial communities from Near-Shore Anoxic Basin of Saanich Inlet of Vancouver Metagenome ENVIRONMENTAL-MARINE incomplete Biotechnological, Environmental, Energy production, Wastewater treatment None Marine Near-shore anoxic basin of Saanich Inlet of British Columbia Canada USA Public Gm00050 001309_GCAT 235000 Joint Genome Institute, Univ of British Columbia DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Aquatic microbial community from New Orleans Floodwaters Metagenome ENVIRONMENTAL-AQUATIC incomplete None USA Public Gm00064 001310_GCAT 10000 Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Aquatic microbial community from Columbia River Metagenome ENVIRONMENTAL-AQUATIC incomplete None USA Public Gm00065 001311_GCAT 5000 Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil microbial community from Tallgrass Prairie Metagenome ENVIRONMENTAL-SOIL incomplete Biotechnological, Energy production, Bioenergy None USA Public Gm00066 001312_GCAT 10000 Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Poplar biomass decaying microbial community Metagenome ENVIRONMENTAL-PLANTS incomplete Biotechnological, Energy production, Bioenergy None USA Public Gm00067 001313_GCAT 200000 Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Gut microbiome of Anoplophora glabripennis Anoplophora glabripennis Metagenome ENDOBIOTIC-INSECTS incomplete incomplete Biotechnological, Energy production, Bioenergy None USA Public Gm00068 001314_GCAT Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Gut microbiome of Tipula abdominalis Tipula abdominalis Metagenome ENDOBIOTIC-INSECTS incomplete incomplete Biotechnological, Energy production, Bioenergy None USA Public Gm00069 001315_GCAT Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Elephant Grass decomposer microbial community Metagenome ENVIRONMENTAL-PLANTS incomplete Biotechnological, Energy production, Bioenergy None USA Public Gm00070 001316_GCAT Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Gut microbiome of Macropus eugenii Macropus eugenii Metagenome ENDOBIOTIC-ANIMALS incomplete incomplete Biotechnological, Energy production, Bioenergy None USA Public Gm00074 002669_GCAT Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fossil microbiome from Neanderthal Metagenome ENVIRONMENTAL-FOSSIL incomplete None 38,000-year old specimen from Vindija Croatia USA Public Gm00075 002670_GCAT 18311 65 DX935178-DX936503 Joint Genome Institute, Max Planck Institute DOE Science 314(5802):1113-8 November 17, 2006 Rubin EM http://www-gsd.lbl.gov/ unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fossil microbiome from Neanderthal 454 Metagenome ENVIRONMENTAL-FOSSIL incomplete None Vi-80 Neanderthal bone from Vindija Croatia USA Public Gm00076 002671_GCAT 18313 CAAN01000000 Max Planck Institute Nature 444, 330-6 November 17, 2006 Green RE green@eva.mpg.de unclassified unclassified unclassified unclassified unclassified hot springs metagenome MICROBIAL Aquatic viral communities from Yellowstone Hot Springs Metagenome ENVIRONMENTAL-AQUATIC incomplete Thermophile, Alkaline None Hot spring, Aquatic 74-93 Alkaline hot springs in Yellowstone National Park USA Public Gm00077 002672_GCAT 433727 20821 Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified human lung metagenome MICROBIAL Lung microbiome of Human Homo sapiens Metagenome ENDOBIOTIC-HUMAN incomplete incomplete Host, Endotracheal tract Patients whose airways were colonized with P. aeruginosa during mechanical ventilation USA Public Gm00079 002674_GCAT 433733 19103 Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine viroplankton communities from surface and estuarine waters Metagenome ENVIRONMENTAL-MARINE incomplete None Marine USA Public Gm00072 001317_GCAT J Craig Venter Institute NSF Williamson S swilliamson@venterinstitute.org unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fungal communities from the Arctic Metagenome ENVIRONMENTAL incomplete Psychrophile None USA Public Gm00073 001318_GCAT Univ of Alaska Fairbanks NSF Taylor D fflt@uaf.edu unclassified unclassified unclassified unclassified unclassified mouse gut metagenome MICROBIAL Gut microbiome of Mouse lean and obese Mus musculus Metagenome ENDOBIOTIC-ANIMALS complete complete Medical None Host, Gut fecal contents from Mus musculus strain C57BL/6J USA Public Gm00071 001319_GCAT 410661 17385 199800 13892 AATF01000000 NCBI Washington Univ Nature 444, 1027-131 December 21, 2006 Gordon JI jgordon@wustl.edu unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Gut microbiome of Human healthy adults Homo sapiens Metagenome ENDOBIOTIC-HUMAN complete complete Medical None Host, Gut Fecal specimen of healthy human USA Public Gm00052 001321_GCAT 16729 72000 46503 AAQL01000000, AAQK00000000 TIGR, Washington Univ, Stanford univ NIH Science 312, 1355-9 June 2, 2006 Gill SR http://www.tigr.org/faculty/Gill_Steven/index.shtml unclassified unclassified unclassified unclassified unclassified marine metagenome MICROBIAL Marine viral communities from Chesapeake Bay Metagenome ENVIRONMENTAL-MARINE incomplete Marine Water samples from Chesapeake in September on 2002 USA Public Gm00053 001322_GCAT 408172 16522 4400 CAMERA, Univ of Delaware Univ of Delaware Wommack E http://www.virusecology.org/MOVE/K.%20Eric%20Wommack.html unclassified unclassified unclassified unclassified unclassified uncultured human fecal virus MICROBIAL Gut viriome of Human healthy adults Metagenome ENDOBIOTIC-VIRAL complete complete Host, Human fecal Three fecal samples from two healthy human individuals Singapore Public Gm00055 001324_GCAT 239364 16209 AAMI00000000, AAMH00000000, AAMG00000000 Genome Institute of Singapore Genome Institute of Singapore PLoS Biology 4, e3 January 1, 2006 Ruan Y ruanyj@gis.a-star.edu.sg unclassified unclassified unclassified unclassified unclassified uncultured marine RNA virus MICROBIAL Marine RNA viral communities from coastal samples Metagenome ENVIRONMENTAL-MARINE complete Marine Canada Public Gm00056 001325_GCAT 375198 17367 Univ of British Columbia Science 312, 1795-8 June 23, 2006 unclassified unclassified unclassified unclassified unclassified marine metagenome MICROBIAL Marine microbial communities from North Atlantic deep water Metagenome ENVIRONMENTAL-MARINE complete None Marine, Deep sea Seep water masses of the North Atlantic and diffuse flow hydrothermal vent USA Public Gm00057 001326_GCAT 408172 17381 Marine Biological Laboratory PNAS 103, 12115-20 August 8, 2006 Sogin M sogin@mbl.edu unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial communities from Bras del Port saltern in Santa Pola Spain crystallizer pond Metagenome ENVIRONMENTAL-EXTREME complete Marine solar slatern 30 Crystallizer pond CR30 in the multi-pond saltern "Bras del Port" located in Santa Pola (Alicante, Spain, 380 12' N, 00 36' W) in November 2002 Canada Public Gm00058 001327_GCAT 2400 DU824018-DU826964 CAMERA Univ Miguel Hernandez BMC Genomics 7, 171 July 4, 2006 Rodriguez-Valera F frvalera@umh.es unclassified unclassified unclassified unclassified unclassified marine metagenome MICROBIAL Marine Plankton communities from deep Mediterranean sea Ionian station Km3 Metagenome ENVIRONMENTAL-MARINE complete complete Marine 13.9 3010m depth in the Mediterranean Sea, Ionian Km3 Station (36 29 98 N, 15 39 97 E, salinity 38.75 PSU Spain 50 Public Gm00124 003216_GCAT 408172 19587 7200 EI942868-EI951915 Univ Miguel Hernandez PLoS ONE 2(9), e914 September 19, 2007 Rodriguez-Valera F frvalera@umh.es unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Aquatic microbial community from Contaminated Groundwater Metagenome ENVIRONMENTAL-EXTREME incomplete Acidophile Biotechnological, Environmental, Ecological, Bioremediation None Aquatic, Groundwater Natural and Accelerated Bioremediation Research (NABIR) Field Research Center (FRC), Well FW-010 USA Public Gm00007 001328_GCAT Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Acid Mine Drainage (ARMAN) euryarchaeal community from Richmond mine Metagenome ENVIRONMENTAL-EXTREME incomplete Acidophile Biotechnological, Environmental, Ecological None Aquatic USA Public Gm00008 001329_GCAT Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov Archaea Korarchaeota unclassified unclassified unclassified korarchaeote OPF1-KOR ARCHAEAL Korarchaeote sp. OPF1-KOR ABI Metagenome KORARCHAEA complete complete Evolutionary None USA Public Gi02262 Gm00010 001331_GCAT 374847 16525 Joint Genome Institute DOE Elkins J jelkins@ucsd.edu unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Endophytic crenarchaeal communities of Plant roots Metagenome ENDOBIOTIC-PLANTS incomplete incomplete Mesophile, Denitrifying Environmental, Ecological None USA Public Gm00011 001332_GCAT Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Wastewater Terephthalate-degrading communities from Bioreactor Metagenome SYNTHETIC-BIOREACTOR incomplete Thermophile Biotechnological, Wastewater treatment, Plastic production None 55 USA Public Gm00012 001333_GCAT Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified termite gut metagenome MICROBIAL Gut microbiome of termites Nasutitermes sp Metagenome ENDOBIOTIC-INSECTS incomplete incomplete Symbiont Biotechnological, Energy production None Host Proctodeal segment 3 (P3) gut lumen fluid collected from the termite Nasutitermes sp from Costa Rica (N10.11.260 W083.51.345) at 310 m altitude USA Public Gm00013 001334_GCAT 433724 19107 Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Wastewater EBPR microbial communities from Bioreactor Metagenome SYNTHETIC-BIOREACTOR complete Biotechnological, Wastewater treatment None Sludge 7-7.3 Activated sludge mixed liquor from Nine Springs Wastewater Treatment Plant Madison WI July 2004 USA Public Gm00015 001335_GCAT 17663 109657 64844 AATO01000000, AATN00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Nat. Biotechnol. 24, 1263-9 September 29, 2006 Hugenholtz P PHugenholtz@lbl.gov unclassified unclassified unclassified unclassified unclassified marine metagenome MICROBIAL Marine viral communities from ocean environments 454 Metagenome ENVIRONMENTAL-MARINE complete complete Environmental, MMI Marine 14.7 - 30.5 Environmental samples from four Oceanic regions collected over a decase USA Public Gm00060 000002_GCAT 408172 18225 179283 216746 SCUMS, CAMERA, SEED, SEED, SEED, SEED SDSU Moore Foundation PLoS Biology 4, e368 September 25, 2006 Edwards R http://phage.sdsu.edu/members/profile.php?user=rob Bacteria Proteobacteria Rickettsiales unclassified unclassified Oligobacter sp. SKA48 BACTERIAL Oligobacter sp SKA48 Genome PROTEOBACTERIA-ALPHA incomplete Oligotroph, Small, Slow growing Environmental, MMI None Marine Seawater obtained at a depth of 2-5m from the Skagerrak Sea in the North Atlantic Ocean USA Public Gi00867 001341_GCAT 314257 13565 2000 JCVI J Craig Venter Institute, Univ of Kalmar Moore Foundation Hagstrom A http://halia.hik.se/start.jsp?page=members/ake%20hagstrom Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Pseudovibrio Pseudovibrio sp. JE062 BACTERIAL Pseudovibrio sp. JE062 Mycale laxissima Genome PROTEOBACTERIA-ALPHA incomplete Symbiont, Facultative, Denitrifying Environmental, MMI None Marine, Host Key Largo Florida USA Public Gi01692 001342_GCAT 439495 19345 J Craig Venter Institute Moore Foundation Hill R http://www.umbi.umd.edu/%7Ecomb/faculty/hill/hill.html Bacteria Verrucomicrobia unclassified Opitutaceae Opitutus Opitutus terrae BACTERIAL Opitutus terrae Pb90-1 DSM 11246 Genome VERRUCOMICROBIA incomplete Anaerobe, Coccus-shaped, Motile, Nonsporulating Evolutionary None Soil USA 74 Public Gi01027 001343_GCAT 107709 16101 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Bacillales Paenibacillaceae Paenibacillus Paenibacillus larvae BACTERIAL Paenibacillus larvae BRL-230010 Genome FIRMICUTES Draft incomplete Pathogen, Sporulating, Rod-shaped Medical, Animal Pathogen, Insect Pathogen American foulbrood USA 44.1 Public Gi00422 001344_GCAT 392917 13476 4016 NZ_AARF00000000 BCM-HGSC BCM-HGSC NIH-NIAID Weinstock G http://www.bcm.tmc.edu/pa/weinstock.htm Bacteria Firmicutes Bacillales Paenibacillaceae Paenibacillus Paenibacillus polymyxa BACTERIAL Paenibacillus polymyxa E681 Genome FIRMICUTES incomplete Non-Pathogen, Plant-growth-promoting rhizobacteria, Antimicrobial activities, Biofertilizer Biotechnological None Korea Public Gi00423 001345_GCAT 349520 16065 5000 GEM KRIBB Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Pantoea Pantoea citrea BACTERIAL Pantoea citrea Genome PROTEOBACTERIA-GAMMA complete Pathogen, Facultative, Nonsporulating Agricultural, Plant Pathogen Pink disease Fruits, Soil USA Proprietary Gi00426 001346_GCAT 53336 Genencor Genencor Genencor Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Pantoea Pantoea stewartii BACTERIAL Pantoea stewartii stewartii DC283 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Nonmotile, Rod-shaped Agricultural, Plant Pathogen Stewart's bacterial wilt, Leaf blight Host USA Public Gi00428 001347_GCAT 66271 5000 BCM-HGSC BCM-HGSC, Univ of Connecticut USDA von Bodman S http://www.mcb.uconn.edu/fac/fac/vonbodman.htm Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Pantoea Pantoea stewartii BACTERIAL Pantoea strewartii DC283. Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Nonmotile, Rod-shaped Agricultural, Plant Pathogen Stewart's bacterial wilt, Leaf blight Host USA Public Gi00427 001348_GCAT 66269 5000 Univ of Wisconsin Univ of Wisconsin NSF Perna N perna@svm.vetmed.wisc.edu Bacteria Proteobacteria Parvularculales Parvularculaceae Parvularcula Parvularcula bermudensis BACTERIAL Parvularcula bermudensis HTCC2503 ABI HTCC2503 Genome PROTEOBACTERIA-ALPHA Draft incomplete Aerobe, Chemoheterotroph, Motile Environmental, MMI None Marine Seawater collected from a depth of 10m at the Bermuda Atlantic Time Series station in the Sargasso Sea USA 60.8 Public Gi00868 001349_GCAT 314260 13509 638341145 2907 2733 NZ_AAMU00000000 NCBI, Oregon State Univ, JCVI J Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm Bacteria Proteobacteria Pasteurellales Pasteurellaceae Pasteurella Pasteurella multocida BACTERIAL Pasteurella multocida P-3480 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Rod-shaped, Facultative, Nonmotile Medical, Animal Pathogen, Swine Pathogen, Cattle Pathogen, Poultry Pathogen, Human Pathogen, Agricultural Swine Progressive Atrophic Rhinitis (PAR), Porcine Pneumonic Pasteurellosis Host Pneumonic lesion of a pig USA Public Gi00433 001350_GCAT 747 Microgen Univ of Oklahoma USDA/CSREES Gillaspy AF allison-gillaspy@ouhsc.edu Bacteria Firmicutes Bacillales Alicyclobacillaceae Pasteuria Pasteuria nishizawae BACTERIAL Pasteuria nishizawae North American ABI Heterodera glycines Genome FIRMICUTES Draft incomplete Pathogen, Sporulating, Obligate parasite, Nematode parasite Agricultural, Biocontrol, Nematode pathogen Unknown Host USA 48.4 Public Gi00434 001351_GCAT 238030 441 638341146 NZ_AACR00000000 NCBI Univ of Illinois at Urbana-Champaign Bacteria Firmicutes Bacillales Alicyclobacillaceae Pasteuria Pasteuria penetrans BACTERIAL Pasteuria penetrans Genome FIRMICUTES incomplete Pathogen, Sporulating, Obligate parasite, Nematode parasite Agricultural, Nematode pathogen, Biocontrol Unknown Host USA Public Gi00435 001352_GCAT 86005 Univ of Florida USDA Preston J jpreston@ufl.edu Bacteria Firmicutes Bacillales Alicyclobacillaceae Pasteuria Pasteuria penetrans BACTERIAL Pasteuria penetrans. Genome FIRMICUTES incomplete Pathogen, Sporulating, Obligate parasite, Nematode parasite Agricultural, Nematode pathogen, Biocontrol Unknown Host USA Public Gi00436 001353_GCAT 86005 North Carolina State Univ, Rothamsted Research Ltd Davies K http://www.rothamsted.bbsrc.ac.uk/ppi/staff/kgd.html Bacteria Proteobacteria Rhizobiales Hyphomicrobiaceae Pedomicrobium Pedomicrobium manganicum BACTERIAL Pedomicrobium manganicum Genome PROTEOBACTERIA-ALPHA incomplete Radiation resistant Biotechnological, Bioremediation, Astrobiological None Surface of desert rocks, Aquatic, Soil USA Public Gi01552 001354_GCAT 47498 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Aquificae Aquificales Aquificaceae Hydrogenobaculum Hydrogenobaculum sp. Y04AAS1 BACTERIAL Hydrogenobaculum sp. Y04AAS1 ABI Genome AQUIFICAE Draft incomplete Rod-shaped, Motile, Nonsporulating Biotechnological, Bioremediation, Astrobiological None Aquatic 58 Acidic hot spring in Yellowstone National Park USA 34 Public Gi01926 002550_GCAT 380749 18891 640963045 1562 1590 NZ_ABFI00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Aquificae Aquificales Hydrogenothermaceae Persephonella Persephonella marina BACTERIAL Persephonella marina EX-H1 Genome AQUIFICAE complete Thermophile, Chemolithoautotroph, Hydrogen oxidizer, Motile, Nonsporulating, Rod-shaped Biotechnological None Aquatic, Hydrothermal vent Deep sea hydrothermal vent on the East Pacific Rise USA Public Gi00443 001355_GCAT 123214 12526 1930 Portland State Univ, TIGR NSF Reysenbach AL reysenbacha@pdx.edu Bacteria Thermotogae Thermotogales Thermotogaceae Petrotoga Petrotoga miotherma BACTERIAL Petrotoga miotherma ATCC 51224 Genome THERMOTOGAE incomplete incomplete Thermophile, Rod-shaped, Nonsporulating, Nonmotile, Anaerobe Oil industry, Biotechnological None Oil fields 55 USA Proprietary Gi00445 001357_GCAT 28237 13340 2177 2099 Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Bacteria Actinobacteria Actinomycetales Nocardiaceae Rhodococcus Rhodococcus equi BACTERIAL Rhodococcus equi ATCC 33701 Genome ACTINOBACTERIA incomplete Pathogen Medical, Animal Pathogen Pneumonia Canada Public Gi00509 001359_GCAT 43767 Univ of Guelph Bacteria Proteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium profundum BACTERIAL Photobacterium profundum 3TCK ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Rod-shaped, Motile, Facultative, Psychrophile, Barophile, Piezophile Environmental, MMI None Marine 15 San Diego Bay USA 42 Public Gi00869 001360_GCAT 314280 13563 638341150 6096 4089 NZ_AAPH00000000 NCBI, JCVI J Craig Venter Institute, Scripps Institute of Oceanography Moore Foundation, NSF Bartlett DH http://mbrdbeta.ucsd.edu/labpages/bartlett_lab.cfm Bacteria Proteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium sp. SKA34 BACTERIAL Photobacterium sp SKA34 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Environmental, MMI None Marine North Atlantic at a depth of 2-5m USA 39.6 Public Gi00870 001361_GCAT 121723 13566 638341151 4945 4567 NZ_AAOU00000000 NCBI, JCVI J Craig Venter Institute, Univ of Kalmar Moore Foundation Hagstrom A http://halia.hik.se/start.jsp?page=members/ake%20hagstrom Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Photorhabdus Photorhabdus asymbiotica BACTERIAL Photorhabdus asymbiotica ATCC43949 Nematode Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Bioluminescent, Nematode symbiont Medical, Human Pathogen Systemic infection, Soft tissue infection Host, Insect gut microflora, Soft tissue, Blood United Kingdom 42 Public Gi00448 001362_GCAT 291112 5500 Sanger Institute Sanger Institute, Univ of Bath BBSRC Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Planctomycetes Planctomycetales Planctomycetaceae Planctomyces Planctomyces maris BACTERIAL Planctomyces maris DSM 8797 DSM 8797 Genome PLANCTOMYCETES Draft incomplete Oval-shaped, Motile, Aerobe Biotechnological, Environmental, Ecological, Evolutionary, MMI None Marine, Coastal Puget Sound Washington USA 50 Proprietary Gi01149 001363_GCAT 344747 15662 640963032 7775 6481 NZ_ABCE00000000 JCVI J Craig Venter Institute, Max Planck Institute Moore Foundation Amann R http://www.mpi-bremen.de/en/Rudolf_Amann.html Bacteria Bacteroidetes Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter filamentus BACTERIAL Polaribacter filamentus Genome BACTEROIDETES incomplete Psychrophile, Aerobe, Nonmotile, Rod-shaped Biotechnological None Aquatic USA Proprietary Gi00476 001364_GCAT 53483 13335 4184 3969 Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Bacteria Bacteroidetes Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter irgensii BACTERIAL Polaribacter irgensii 23-P ABI ATCC 700398 Genome BACTEROIDETES Draft incomplete Psychrophile, Rod-shaped, Motile, Aerobe Environmental, MMI None Marine, Surface water surface water from the Penola Strait Antarctica USA 35 Public Gi00871 001365_GCAT 313594 13451 638341152 2745 2557 NZ_AAOG00000000 NCBI, JCVI J Craig Venter Institute, Desert Research Institute Moore Foundation Murray A http://www.dri.edu/People/alison/ Bacteria Bacteroidetes Bacteroidales Prevotellaceae Prevotella Prevotella intermedia BACTERIAL Prevotella intermedia 17 Genome BACTEROIDETES complete Anaerobe, Pathogen, Rod-shaped, Nonmotile Medical, Human Pathogen Periodontal infection Host Human periodontal pocket USA Public Gi00478 001366_GCAT 246198 175 2800 TIGR TIGR NIH-NIDCR Heidelberg JF jheidel@tigr.org Bacteria Bacteroidetes Bacteroidales Prevotellaceae Prevotella Prevotella ruminicola BACTERIAL Prevotella ruminicola 23 Genome BACTEROIDETES incomplete Anaerobe, Pathogen, Rod-shaped, Nonmotile Medical, Human Pathogen Periodontal infection Host USA Public Gi00479 001367_GCAT 264731 10619 Ohio State Univ, TIGR USDA Nelson KE http://www.tigr.org/~kenelson/ Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus HOT_152-C11 Genome CYANOBACTERIA incomplete incomplete Nonmotile, Carbon cycle Environmental None Aquatic, Surface water USA Public Gi01762 001371_GCAT 1219 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Cyanobacteria Prochlorales Prochloraceae Prochloron Prochloron didemni BACTERIAL Prochloron didemni Lissoclinum patella Genome CYANOBACTERIA incomplete Photosynthetic, Obligate symbiont, Patellamides producer Biotechnological None Aquatic USA Public Gi00723 001372_GCAT 1216 13452 TIGR, Univ of Utah, UCSD NSF Eisen JA http://www.tigr.org/~jeisen/ Bacteria Actinobacteria Actinomycetales Propionibacteriaceae Propionibacterium Propionibacterium acnes BACTERIAL Propionibacterium acnes Genome ACTINOBACTERIA complete Anaerobe, Nonsporulating, Pathogen, Rod-shaped, Nonmotile Medical, Human Pathogen Acne Host, Human skin France Proprietary Gi00481 001373_GCAT 1747 2800 Corixa, Genset Bacteria Actinobacteria Actinomycetales Propionibacteriaceae Propionibacterium Propionibacterium freudenreichii BACTERIAL Propionibacterium freudenreichii Genome ACTINOBACTERIA incomplete Nonmotile, Nonsporulating, Anaerobe, Rod-shaped Food industry, Biotechnological, Lactic acid production None Germany Proprietary Gi00483 001374_GCAT 1744 2640 QIAGEN DSM, FCDF Bacteria Actinobacteria Actinomycetales Propionibacteriaceae Propionibacterium Propionibacterium freudenreichii BACTERIAL Propionibacterium freudenreichii shermanii CIP 103027 ATCC9614 Genome ACTINOBACTERIA incomplete Nonmotile, Nonsporulating, Anaerobe, Rod-shaped Food industry, Biotechnological, Lactic acid production None France 67 Public Gi00772 001375_GCAT 380773 16705 2500 Genoscope INRA, Genoscope Dimova D dimova@labtechno.roazhon.inra.fr Bacteria Verrucomicrobia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter dejongeii BACTERIAL Prosthecobacter dejongeii ATCC 27091 ATCC 27091 Genome VERRUCOMICROBIA incomplete Nonmotile, Aerobe, Rod-shaped Evolutionary None Aquatic USA Proprietary Gi00484 001376_GCAT 48465 13453 4554 5003 Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Bacteria Chlorobi Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris aestuarii BACTERIAL Prosthecochloris aestuarii SK413 ABI DSM 271 Genome CHLOROBI Draft incomplete Nonmotile, Nitrogen fixation, Green sulfur, Photosynthetic, Coccus-shaped Biotechnological None Aquatic USA 50 Public Gi00485 001377_GCAT 290512 12749 638341155 2540 2313 NZ_AAIJ00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Chlorobi Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris sp. BACTERIAL Prosthecochloris spp. Genome CHLOROBI incomplete Nonmotile, Nitrogen fixation, Green sulfur, Photosynthetic, Oval-shaped Biotechnological None USA Public Gi00486 001378_GCAT 290513 12734 2400 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Proteus Proteus mirabilis BACTERIAL Proteus mirabilis Genome PROTEOBACTERIA-GAMMA complete Pathogen, Facultative, Motile, Rod-shaped, Nonsporulating Medical, Human Pathogen, Opportunistic Pathogen Encephalitis, Urinary tract infection, Surgical wound infection, Pyelonephritis, Pneumonia, Septicemia Host, Intestinal microflora 37 USA Proprietary Gi00487 001379_GCAT 584 PathoGenome-TM Genome Therapeutics Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Proteus Proteus mirabilis BACTERIAL Proteus mirabilis HI4320 Genome PROTEOBACTERIA-GAMMA complete Pathogen, Facultative, Motile, Rod-shaped, Nonsporulating Medical, Human Pathogen, Opportunistic Pathogen Encephalitis, Urinary tract infection, Surgical wound infection, Pyelonephritis, Pneumonia, Septicemia Host, Intestinal microflora 37 International Public Gi00488 001380_GCAT 584 12624 6000 Sanger Institute Sanger Institute, Univ of Maryland Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas tunicata BACTERIAL Pseudoalteromonas tunicata D2 ABI CCUG 26757 Genome PROTEOBACTERIA-GAMMA Draft incomplete Rod-shaped, Motile, Facultative Environmental, MMI None Marine 28 Adult tunicate surface at a depth of 10 m in Gullmarsfjorden off of the west coast of Sweden USA 40 Public Gi00876 001381_GCAT 314281 13456 638341157 4973 4504 NZ_AAOH00000000 NCBI, JCVI J Craig Venter Institute, Univ of Georgia Moore Foundation Moran MA http://alpha.marsci.uga.edu/directory/mmoran.htm Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa clinical isolates pacs416 (early) Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Aerobe, Motile, Rod-shaped, Heterotroph, Mesophile Medical, Human Pathogen, Animal Pathogen Cystic Fibrosis Host, Soil, Aquatic USA Public Gi01162 001383_GCAT 287 Univ of Washington, Pseudomonas Genome DBase Univ of Washington Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa clinical isolates pacs5296(late) Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Aerobe, Motile, Rod-shaped, Mesophile, Heterotroph Medical, Human Pathogen, Animal Pathogen Cystic Fibrosis, Opportunistic infection Host, Soil, Aquatic USA Public Gi01163 001384_GCAT 287 Univ of Washington, Pseudomonas Genome DBase Univ of Washington Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa PACS2 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Aerobe, Motile, Rod-shaped, Mesophile, Heterotroph Medical, Human Pathogen, Animal Pathogen Cystic Fibrosis, Nocosomial infection Host, Soil, Aquatic 37 Clinical isolate USA 66.3 Public Gi01646 001385_GCAT 388272 16851 638341161 6492 5676 NZ_AAQW00000000 NCBI Univ of Washington Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa 2192 ABI 9.5x Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Aerobe, Motile, Rod-shaped, Mesophile, Heterotroph Medical, Human Pathogen, Animal Pathogen Cystic Fibrosis, Opportunistic infection Host, Soil 25 - 30 Cystic fibrosis patient USA 66.2 Public Gi01210 001386_GCAT 350703 16171 638341158 6826 6157 NZ_AAKW00000000 NCBI, Broad Institute, Pseudomonas Genome DBase Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa C3719 ABI 9.5x Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Aerobe, Motile, Rod-shaped, Mesophile, Heterotroph Medical, Human Pathogen, Animal Pathogen Cystic Fibrosis Host, Soil, Aquatic Epidemic strain from Manchester, England USA 66.5 Public Gi01211 001387_GCAT 350704 16170 638341159 6147 5650 NZ_AAKV00000000 NCBI, Broad Institute, Pseudomonas Genome DBase Broad Institute NIH-NIAID MSC msc@broad.mit.edu Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa LES Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Aerobe, Motile, Rod-shaped, Mesophile, Heterotroph Medical, Human Pathogen, Animal Pathogen Cystic Fibrosis Host, Soil, Aquatic USA 66 Public Gi01253 001388_GCAT 287 6300 Sanger Institute, Pseudomonas Genome DBase Sanger Institute, Univ of Liverpool, Univ of British Columbia, Simon Fraser Univ Wellcome Trust Parkhill J parkhill@sanger.ac.uk Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. AM2(2007) BACTERIAL Pseudomonas anaerooleophila HD-1 Genome PROTEOBACTERIA-GAMMA complete Rod-shaped, Motile, Aerobe, Mesophile, Heterotroph Biotechnological, Petroleum production None Japan Public Gi00490 001389_GCAT 286 4500 5451 Dragon Genomics, Pseudomonas Genome DBase Takara Bio Inc, Kyoto Univ Kitagawa M kitagawam@takara-bio.co.jp Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens BACTERIAL Pseudomonas fluorescens SBW25 Genome PROTEOBACTERIA-GAMMA incomplete Aerobe, Motile, Rod-shaped, Non-Pathogen, Mesophile, Heterotroph Bioremediation, Environmental None United Kingdom 67 Public Gi00493 001390_GCAT 216595 343 6600 Sanger Institute, Pseudomonas Genome DBase Sanger Institute, Univ of Oxford, Univ of Birmingham BBSRC Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida BACTERIAL Pseudomonas putida PRS1 Genome PROTEOBACTERIA-GAMMA incomplete Aerobe, Motile, Rod-shaped, Non-Pathogen, Mesophile, Heterotroph Bioremediation, Environmental None Soil USA Public Gi00494 001391_GCAT 160489 268 6100 Pseudomonas Genome DBase TIGR DOE Nelson KE http://www.tigr.org/~kenelson/ Bacteria Bacteroidetes Flavobacteriales Flavobacteriaceae Psychroflexus Psychroflexus torquis BACTERIAL Psychroflexus torquis ATCC 700755 ABI ATCC 700755 Genome BACTEROIDETES Draft incomplete Psychrophile, Motile, Aerobe, Chemoheterotroph Environmental, MMI None Marine Prydz Bay, Antarctica from a sea-ice algal assemblage by enrichment on marine agar USA 35 Public Gi00877 001395_GCAT 313595 13542 638341165 4312 4026 NZ_AAPR00000000 NCBI, JCVI J Craig Venter Institute, Univ of Tasmania Moore Foundation Bowman J http://www.scieng.utas.edu.au/agsci/pagedetails.asp?lpersonId=111 Bacteria Proteobacteria Alteromonadales Psychromonadaceae Psychromonas Psychromonas sp. CNPT3 BACTERIAL Psychromonas sp CNPT3 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Piezophile, Heterotroph, Rod-shaped, Motile, Facultative, Psychrophile Environmental, MMI None Deep sea, Marine Central north Pacific Ocean at a depth of 5800m USA 39 Public Gi00878 001396_GCAT 314282 13583 638341167 2937 2727 NZ_AAPG00000000 NCBI, JCVI J Craig Venter Institute, Scripps Institute of Oceanography Moore Foundation, NSF Yayanos AA http://mbrd.ucsd.edu/labpages/yayanos_lab.cfm Bacteria Proteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia solanacearum BACTERIAL Ralstonia solanacearum UW551, R3B2 ABI Genome PROTEOBACTERIA-BETA Draft incomplete Pathogen, Rod-shaped, Aerobe, Motile, Heterotroph Agricultural, Plant Pathogen Plant rot, Wilting disease Soil Wisconsin from a wilted geranium that had been imported from Kenya USA 64 Public Gi01395 001397_GCAT 342110 15601 638341168 5895 4371 NZ_AAKL00000000 NCBI Univ of Florida Gabriel DW gabriel@biotech.ufl.edu Bacteria Proteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia solanacearum BACTERIAL Ralstonia solanacearum MolK2 Genome PROTEOBACTERIA-BETA incomplete Pathogen, Rod-shaped, Aerobe, Motile, Heterotroph Agricultural, Plant Pathogen Plant rot, Wilting disease Soil France Public Gi00954 001398_GCAT 305 Genoscope Genoscope Bacteria Proteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia solanacearum BACTERIAL Ralstonia solanacearum 1609 Genome PROTEOBACTERIA-BETA incomplete Pathogen, Rod-shaped, Aerobe, Motile, Heterotroph Agricultural, Plant Pathogen Plant rot, Wilting disease Soil France Public Gi00959 001399_GCAT 305 Genoscope Genoscope Bacteria Proteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus taiwanensis BACTERIAL Ralstonia (Cupriavidus) taiwanensis LMG19424 Mimosa pudica Genome PROTEOBACTERIA-BETA incomplete Nitrogen fixation, Rod-shaped, Motile, Facultative, Symbiont, Heterotroph, Mesophile Agricultural None Host, Root nodule Root nodule of the legume Mimosa pudica in Taiwan France Public Gi00956 001400_GCAT 164546 15733 3500 Genoscope Genoscope Bacteria Proteobacteria unclassified unclassified Reinekea Reinekea sp. MED297 BACTERIAL Reinekea sp. MED297 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Environmental, MMI None Marine NW Mediterranean Sea at a depth of 1m USA 52 Public Gi00879 001401_GCAT 314283 13534 638341169 4506 4238 NZ_AAOE00000000 NCBI, JCVI J Craig Venter Institute, Kalmar Univ Moore Foundation Pinhassi J http://halia.hik.se/start.jsp?page=members/jarone%20pinhassi Bacteria Actinobacteria Actinomycetales Micrococcaceae Renibacterium Renibacterium salmoninarum BACTERIAL Renibacterium salmoninarum ATCC 33209 Genome ACTINOBACTERIA incomplete Pathogen, Nonmotile, Facultative, Coccus-shaped, Nonsporulating Medical, Fish Pathogen Bacterial kidney disease Aquatic, Host 15 USA Public Gi00502 001402_GCAT 288705 19227 3400 NWFSC, Univ of Washington NWFSC, NCCCWA, Univ of Washington, Integrated Genomics Inc USDA Strom M http://www.nwfsc.noaa.gov/research/divisions/reutd/fhm/ Bacteria Proteobacteria Rhizobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum BACTERIAL Rhizobium leguminosarum trifolii WSM1325 trifolii ABI Perennial clovers Genome PROTEOBACTERIA-ALPHA incomplete Nitrogen fixation, Motile, Aerobe, Rod-shaped, Non-Pathogen Biotechnological, Agricultural None Host, Root nodule USA Public Gi01547 001403_GCAT 386 20097 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum BACTERIAL Rhizobium leguminosarum trifolii WSM2304 trifolii Clover plants Genome PROTEOBACTERIA-ALPHA incomplete incomplete Nitrogen fixation, Motile, Aerobe, Rod-shaped, Non-Pathogen Biotechnological, Agricultural None Host, Root nodule USA Public Gi01548 001404_GCAT 395492 20179 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Rhizobiaceae Rhizobium Rhizobium tropici BACTERIAL Rhizobium tropici PRF 81 Phaseolus vulgaris Genome PROTEOBACTERIA-ALPHA incomplete Aerobe, Thermotolerant, Rod-shaped, Motile Agricultural None Host, Root nodule Brazil Public Gi00505 001405_GCAT 363754 13459 Embrapa Embrapa Hungria m hungria@cnpso.embrapa.br Bacteria Proteobacteria Rhizobiales Bradyrhizobiaceae Bradyrhizobium Bradyrhizobium japonicum BACTERIAL Bradyrhizobium japonicum SEMIA 5079 Genome PROTEOBACTERIA-ALPHA incomplete incompleet Nitrogen fixation, Aerobe, Motile, Rod-shaped, Photosynthetic, Mesophile Agricultural, Biotechnological, Commercial inoculant None Host, Root nodule 25-30 Brazil Public Gi02461 003183_GCAT 476282 20963 Embrapa Embrapa Embrapa labinfo@lncc.br Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas pseudoalcaligenes BACTERIAL Pseudomonas pseudoalcaligenes MTCC 5210 Genome PROTEOBACTERIA-GAMMA incomplete incompleet Aerobe, Mesophile, Cyanotroph, Mesophile, Heterotroph Bioremediation None Soil India Public Gi02462 003184_GCAT 468557 20259 Central Leather Research Institute Bacteria Proteobacteria Rhizobiales Rhizobiaceae Rhizobium Rhizobium sp. BACTERIAL Rhizobium sp. NGR234 (ANU265) Genome PROTEOBACTERIA-ALPHA incomplete Motile, Stores polyhydroxybutyrate, Aerobe Biotechnological, Agricultural None Host, Root nodule Germany Public Gi00585 001406_GCAT 391 5600 Goettingen Genomics Laboratory, Univ of Geneva Streit W wstreit@gwdg.de Bacteria Actinobacteria Actinomycetales Nocardiaceae Rhodococcus Rhodococcus equi BACTERIAL Rhodococcus equi 103S Genome ACTINOBACTERIA incomplete Pathogen Medical, Animal Pathogen Bronchopneumonia Host United Kingdom 68 Public Gi01083 001407_GCAT 43767 4500 Sanger Institute Sanger Institute BBSRC Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Actinobacteria Actinomycetales Nocardiaceae Rhodococcus Rhodococcus erythropolis BACTERIAL Rhodococcus erythropolis RR4 Genome ACTINOBACTERIA incomplete Sulfate reducer, Magnetite production Biotechnological None Japan Public Gi00730 001408_GCAT 234621 NITE NITE Fujita N fujita-nobuyuki@nite.go.jp Bacteria Actinobacteria Actinomycetales Nocardiaceae Rhodococcus Rhodococcus opacus BACTERIAL Rhodococcus opacus B4 Genome ACTINOBACTERIA incomplete Aerobe Biotechnological None Japan Public Gi01302 001409_GCAT 37919 NITE NITE Fujita N fujita-nobuyuki@nite.go.jp Bacteria Actinobacteria Actinomycetales Nocardiaceae Rhodococcus Rhodococcus sp. I24 BACTERIAL Rhodococcus sp. I24 Genome ACTINOBACTERIA incomplete Biotechnological None USA Proprietary Gi00511 001410_GCAT 91380 5487 6103 Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Rhodobacter Rhodobacter capsulatus BACTERIAL Rhodobacter capsulatus SB1003 Genome PROTEOBACTERIA-ALPHA incomplete Phototroph, Rod-shaped, Motile, Facultative, Nonsporulating Biotechnological None 25 - 35 International Public Gi00507 001411_GCAT 272942 55 3700 2099 Institute of Molecular Genetics, Prague, Integrated Genomics Inc Univ of Chicago, Institute of Molecular Genetics, Prague, Integrated Genomics Inc Haselkorn R http://bmb.bsd.uchicago.edu/rHaselkorn.html Bacteria Proteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Polynucleobacter necessarius BACTERIAL Polynucleobacter necessarius STIR1 Euplotes aediculatus Genome PROTEOBACTERIA-BETA incomplete Endosymbiont, Heterotroph, Curved-shaped, Nonmotile, Aerobe Biotechnological, Ecological None Aquatic, Host, Fresh water USA 46 Public Gi01031 001414_GCAT 44014 19991 1700 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Bradyrhizobiaceae Rhodopseudomonas Rhodopseudomonas palustris BACTERIAL Rhodopseudomonas palustris TIE-1 Genome PROTEOBACTERIA-ALPHA incomplete Anaerobe, Iron oxidizer, Photolithoautotroph, Motile, Rod-shaped Biotechnological, Bioremediation, Environmental None Soil 25 - 30 Iron-rich mat from School Street Marsh in Woods Hole MA USA Public Gi01561 001416_GCAT 395960 20167 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Rhodobacter Rhodobacter sp. SW2 BACTERIAL Rhodobacter sp. SW2 Genome PROTEOBACTERIA-ALPHA incomplete Anaerobe, Iron oxidizer, Photolithoautotroph Biotechnological, Bioremediation, Environmental None Soil USA Public Gi01562 001417_GCAT 371731 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhodospirillales Rhodospirillaceae Rhodospirillum Rhodospirillum centenum BACTERIAL Rhodospirillum (Rhodocista) centenum (centenaria) SW 9.7x Genome PROTEOBACTERIA-ALPHA complete incomplete Photosynthetic, Spiral-shaped, Lithotroph Biotechnological None Aquatic 40 - 42 USA Public Gi00727 001418_GCAT 414684 18307 4355 1 0 TGen Arizona State Univ, TGen NSF Blankenship RE Blankenship@asu.edu Bacteria Proteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia africae BACTERIAL Rickettsia africae ESF-5 Genome PROTEOBACTERIA-ALPHA Draft incomplete Pathogen, Aerobe, Nonmotile, Nonsporulating, Obligate parasite Medical, Human Pathogen African Tick-Bite Fever Host Cattle tick Amblyomma variegatum collected in Ethiopia France 32.4 Public Gi00810 001419_GCAT 347255 18269 1300 NZ_AAUY00000000 CNRS CNRG Raoult D didier.raoult@medecine.univ-mrs.fr Bacteria Proteobacteria Legionellales Coxiellaceae Rickettsiella Rickettsiella grylli BACTERIAL Rickettsiella grylli ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Intracellular, Obligate parasite, Rod-shaped, Nonmotile, Facultative Evolutionary, Agricultural, Insect Pathogen, Biocontrol Soil, Host USA 37 Public Gi01275 001422_GCAT 59196 16722 638341179 1561 1410 NZ_AAQJ00000000 NCBI TIGR NIH-NIAID Bacteria Proteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia slovaca BACTERIAL Rickettsia slovaca 13-B Genome PROTEOBACTERIA-ALPHA incomplete Non-Pathogen, Aerobe, Nonmotile, Nonsporulating, Obligate parasite Medical, Human Pathogen Headache, Malaise Host France Public Gi00813 001424_GCAT 35794 15712 CNRS CNRG Raoult D didier.raoult@medecine.univ-mrs.fr Bacteria Proteobacteria Burkholderiales Comamonadaceae Ramlibacter Ramlibacter tataouinensis BACTERIAL Ramlibacter tataouinensis TTB310 DSM 14655, ATCC BAA-407, LMG 21543 Genome PROTEOBACTERIA-ALPHA incomplete Rod-shaped, Aerobe, Chemoorganotroph Evolutionary None Soil Subsurface desert soil from Tunisia France 69.6 Public Gi01393 001425_GCAT 365046 16294 CNRS CNRG Raoult D didier.raoult@medecine.univ-mrs.fr Bacteria Proteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia rickettsii BACTERIAL Rickettsia rickettsii Genome PROTEOBACTERIA-ALPHA complete complete Pathogen, Aerobe, Nonmotile, Nonsporulating, Obligate parasite Medical, Human Pathogen Rocky Mountain Spotted Fever Host 37 USA 32.5 Public Gi00512 001426_GCAT 783 9636 638341177 1257 1311 NZ_AADJ00000000 NCBI The Institute for Systems Biology NIH-NIAID Madan A amadan@systemsbiology.org Bacteria Proteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia rickettsii BACTERIAL Rickettsia rickettsii Iowa Genome PROTEOBACTERIA-ALPHA incomplete Pathogen, Aerobe, Nonmotile, Nonsporulating, Obligate parasite Medical, Human Pathogen Rocky Mountain Spotted Fever Host 37 USA Public Gi02173 002838_GCAT 452659 19943 RML-NIAID, Integrated Genomics Inc NIH Bacteria Proteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia rickettsii BACTERIAL Rickettsia rickettsii Sheila Smith Genome PROTEOBACTERIA-ALPHA complete Pathogen, Aerobe, Nonmotile, Nonsporulating, Obligate parasite Medical, Human Pathogen Rocky Mountain Spotted Fever Host Patient with Rocky Mountain spotted fever USA Public Gi01654 001427_GCAT 392021 17233 640753046 Univ of Iowa Bacteria Proteobacteria Rickettsiales Anaplasmataceae Neorickettsia Neorickettsia risticii BACTERIAL Neorickettsia risticii Illinois 454 Genome PROTEOBACTERIA-ALPHA complete Pathogen, Rod-shaped, Aerobe, Intracellular, Mesophile Medical, Human Pathogen Rocky Mountain Spotted Fever Host Patient with Rocky Mountain spotted fever USA Public Gi01957 002583_GCAT 434131 19099 Ohio State Univ, 454 Life Sciences Bacteria Bacteroidetes Flavobacteriales Flavobacteriaceae Robiginitalea Robiginitalea biformata BACTERIAL Robiginitalea biformata HTCC2501 ABI HTCC2501 Genome BACTEROIDETES Draft incomplete Aerobe, Chemoheterotroph, Nonmotile, Rod-shaped Environmental, MMI None Marine 30 Seawater taken at a depth of 10m from the Sargasso Sea USA 55 Public Gi00880 001428_GCAT 313596 13461 638341180 3533 3228 NZ_AAOI00000000 NCBI, Oregon State Univ, JCVI J Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Roseobacter Roseobacter denitrificans BACTERIAL Roseobacter denitrificans Shiba O Ch 114 Genome PROTEOBACTERIA-ALPHA incomplete Photosynthetic, Rod-shaped, Motile, Aerobe, Phototroph Biotechnological, Environmental None Aquatic USA Proprietary Gi00514 001431_GCAT 375451 Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Roseobacter Roseobacter sp. MED193 BACTERIAL Roseobacter sp. MED193 ABI Genome PROTEOBACTERIA-ALPHA Draft incomplete Photosynthetic, Rod-shaped, Motile, Aerobe, Phototroph Biotechnological, Environmental, MMI None Marine Northwest Mediterranean Sea at a depth of 1m USA 58 Public Gi00881 001432_GCAT 314262 13590 638341182 4663 4534 NZ_AANB00000000 NCBI, JCVI J Craig Venter Institute, Kalmar Univ Moore Foundation Pinhassi J http://halia.hik.se/start.jsp?page=members/jarone%20pinhassi Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Roseovarius Roseovarius sp. HTCC2601 BACTERIAL Roseovarius sp. HTCC2601 ABI HTCC2601 Genome PROTEOBACTERIA-ALPHA Draft incomplete Rod-shaped, Aerobe, Heterotroph Environmental, MMI None Marine Depth of 10m at the Bermuda Atlantic Time Series station in the Sargasso Sea USA 66 Public Gi00882 001433_GCAT 314265 13574 639857002 5425 5452 NZ_AATQ00000000 NCBI, Oregon State Univ, JCVI J Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Roseovarius Roseovarius aestuarii BACTERIAL Roseovarius sp. 217 ABI Genome PROTEOBACTERIA-ALPHA Draft incomplete Rod-shaped, Aerobe, Heterotroph Environmental, MMI None Aquatic, Marine Surface seawater collected near Plymouth England USA 61 Public Gi00883 001434_GCAT 74030 13576 638341184 4762 4772 NZ_AAMV00000000 NCBI, JCVI J Craig Venter Institute, Univ of Warwick Moore Foundation Murrell JC http://www.bio.warwick.ac.uk/res/frame.asp?ID=30 Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Roseovarius Roseovarius nubinhibens BACTERIAL Roseovarius nubinhibens ISM ABI ATCC BAA-591 Genome PROTEOBACTERIA-ALPHA Draft incomplete Rod-shaped, Aerobe, Mesophile, Heterotroph Environmental, MMI None Surface water, Marine Surface waters of the Caribbean Sea USA 65 Public Gi00884 001435_GCAT 89187 13464 638341183 3672 3547 NZ_AALY00000000 NCBI, RoseoBase, JCVI J Craig Venter Institute, Univ of Georgia Moore Foundation Moran MA http://alpha.marsci.uga.edu/directory/mmoran.htm Bacteria Firmicutes Clostridiales Lachnospiraceae Ruminococcus Ruminococcus albus BACTERIAL Ruminococcus albus 8 Genome FIRMICUTES incomplete Anaerobe, Cellulolytic, Motile, Coccus-shaped Biotechnological None Host 40 USA Public Gi00517 001436_GCAT 246199 62 4000 TIGR, NACRB USDA Nelson KE http://www.tigr.org/~kenelson/ Bacteria Firmicutes Clostridiales Lachnospiraceae Ruminococcus Ruminococcus flavefaciens BACTERIAL Ruminococcus flavefaciens FD-1 Genome FIRMICUTES incomplete Cellulolytic Biotechnological None USA Public Gi00518 001437_GCAT 1265 4440 Univ of Illinois at Urbana-Champaign Univ of Illinois at Urbana-Champaign White BA http://www.nutrsci.uiuc.edu/Faculty/bryan.a.white.html Bacteria Actinobacteria Actinomycetales Pseudonocardiaceae Saccharopolyspora Saccharopolyspora erythraea BACTERIAL Saccharopolyspora erythraea NRRL 23338 NRRL 23338 Genome ACTINOBACTERIA complete Sporulating, Aerobe Biotechnological, Antibiotic production, Erythromycin production None Italy Proprietary Gi00714 001438_GCAT 405948 17885 8200 8007 Aventis, Italy, Istituto Tecnologie Biomediche, MWG-Biotech Italian Ministry of Research Bacteria Bacteroidetes Sphingobacteriales unclassified Salinibacter Salinibacter ruber BACTERIAL Salinibacter ruber M8 ABI 12x Genome BACTEROIDETES incomplete Halophile, Heterotroph, Polymer degrader Biotechnological, Environmental None Aquatic France Public Gi01085 001439_GCAT 146919 3800 Genoscope Genoscope Barbe V vbarbe@genoscope.cns.fr Bacteria Actinobacteria Actinomycetales Micromonosporaceae Salinispora Salinispora arenicola BACTERIAL Salinispora arenicola CNH643 ATCC BAA-917, DSM 44819 Genome ACTINOBACTERIA incomplete Filament-shaped Biotechnological, Medical, Cancer treatment None Aquatic Beach sand at a depth of 1 meter from Sweetings Cay in the Bahamas USA 67 Public Gi01033 001440_GCAT 391967 15700 7700 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Micromonosporaceae Salinispora Salinispora tropica BACTERIAL Salinispora tropica ATCC BAA-916 ATCC BAA-916 Genome ACTINOBACTERIA incomplete Biotechnological, Medical, Cancer treatment None Aquatic USA 69 Public Gi01648 001443_GCAT 369750 15701 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella bongori BACTERIAL Salmonella bongori 12419 ATCC 43975 Genome PROTEOBACTERIA-GAMMA complete Facultative, Motile, Pathogen, Rod-shaped Medical, Animal Pathogen, Reptile-specific Pathogen Food poisoning, Salmonellosis Host United Kingdom 52 Public Gi00530 001444_GCAT 218493 351 4400 1 Sanger Institute Sanger Institute, PHLS Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica arizonae sv 62:z4,z23 RSK2980 ATCC BAA-731 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Facultative, Motile, Rod-shaped Medical, Human Pathogen, Animal Pathogen, Reptile Pathogen Food poisoning, Salmonellosis Host Cornsnake in 1986 in Oregon USA Public Gi00531 001445_GCAT 41514 13030 4800 Washington Univ Washington Univ NIH-NIAID Clifton S sclifton@watson.wustl.edu Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica diarizonae sv 61:1,v:1,5,(7) CDC 01-0005 ATCC BAA-639 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Facultative, Motile, Rod-shaped Medical, Human Pathogen, Animal Pathogen, Reptile Pathogen Food poisoning, Salmonellosis Host Patient in Indiana USA USA Public Gi00533 001446_GCAT 59204 13031 3600 Washington Univ Washington Univ NIH-NIAID Clifton S sclifton@watson.wustl.edu Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Dublin Dublin Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Facultative, Motile, Rod-shaped Medical, Human Pathogen, Animal Pathogen, Cattle Pathogen Food poisoning, Salmonellosis, Gastroenteritis Host, Bovine Intestinal microflora USA Public Gi00534 001447_GCAT 98360 240 8000 NCBI, Univ of Illinois Univ of Illinois at Urbana-Champaign USDA Maloy S http://www.sci.sdsu.edu/~smaloy/ unclassified unclassified unclassified unclassified unclassified unclassified BACTERIAL Salmonella enterica Paratyphi B SPB7 Paratyphi B Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Facultative, Motile, Rod-shaped Medical, Human Pathogen Paratyphoid fever, Salmonellosis, Food poisoning Host Patient in Malaysia in 2002 USA Public Gi00535 001448_GCAT 272994 209 4800 Washington Univ Washington Univ NIH-NIAID Clifton S sclifton@watson.wustl.edu Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Paratyphi C Paratyphi C Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Facultative, Motile, Rod-shaped, Mesophile Medical, Human Pathogen Salmonellosis, Food poisoning, Gastroenteritis, Paratyphoid fever Host 37 Canada Public Gi00814 001449_GCAT 57046 4800 Univ of Calgary, Univ of Illinois at Urbana-Champaign Liu, S-L http://www.med.ucalgary.ca/webs/bprg/Liu/Liu.html Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Paratyphi C RKS4594 Paratyphi C Genome PROTEOBACTERIA-GAMMA incomplete incomplete Pathogen, Facultative, Motile, Rod-shaped, Mesophile Medical, Human Pathogen Salmonellosis, Food poisoning, Gastroenteritis, Paratyphoid fever Host 37 China Public Gi02487 003212_GCAT 476213 20993 4800 Peking Univ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Pullorum Pullorum Genome PROTEOBACTERIA-GAMMA incomplete Facultative, Motile, Pathogen, Rod-shaped, Fowl-adapted Medical, Human Pathogen Gastroenteritis, Food poisoning, Salmonellosis, Dysenteria Host USA Public Gi00536 001450_GCAT 605 33 Univ of Illinois Univ of Illinois at Urbana-Champaign, Univ of Calgary USDA Maloy S http://www.sci.sdsu.edu/~smaloy/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Enteritidis LK5 Enteritidis Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Facultative, Motile, Rod-shaped Medical, Human Pathogen Gastroenteritis , Food poisoning, Salmonellosis Host Chicken USA Public Gi00538 001452_GCAT 272989 32 4500 Univ of Illinois, Keck Center, Univ of Illinois Univ of Illinois at Urbana-Champaign USDA Maloy S http://www.sci.sdsu.edu/~smaloy/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Enteritidis PT4 Enteritidis NCTC 13349 Genome PROTEOBACTERIA-GAMMA complete Pathogen, Facultative, Motile Medical, Human Pathogen Food poisoning, Salmonellosis, Gastroenteritis Host United Kingdom Public Gi00539 001453_GCAT 149539 Sanger Institute Sanger Institute Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Enteritidis PT8 Enteritidis Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Facultative, Motile, Rod-shaped Medical, Human Pathogen Food poisoning, Salmonellosis, Gastroenteritis Host International Public Gi00815 001454_GCAT 149539 Univ of Calgary, Univ of Illinois at Urbana-Champaign Liu, S-L http://www.med.ucalgary.ca/webs/bprg/Liu/Liu.html Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Gallinarum 287/91 Gallinarum NCTC 13346 Genome PROTEOBACTERIA-GAMMA incomplete Facultative, Motile, Pathogen Medical, Human Pathogen Food poisoning, Salmonellosis, Gastroenteritis Host United Kingdom Public Gi00540 001455_GCAT 594 5000 Sanger Institute Sanger Institute, PHLS Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella paratyphi BACTERIAL Salmonella enterica Paratyphi A AKU_12601 Paratyphi A Genome PROTEOBACTERIA-GAMMA complete Pathogen, Facultative, Motile, Rod-shaped Medical, Human Pathogen Typhoid fever, Food poisoning, Salmonellosis, Gastroenteritis Host United Kingdom 52.2 Public Gi00541 001456_GCAT 54388 4581 1 1 Sanger Institute Sanger Institute, Imperial College Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella typhimurium BACTERIAL Salmonella enterica Typhimurium DT104 Typhimurium NCTC 13348 Genome PROTEOBACTERIA-GAMMA complete Facultative, Motile, Chemoorganotroph, Pathogen, Rod-shaped Medical, Human Pathogen, Cattle Pathogen, Animal Pathogen Food poisoning, Salmonellosis, Gastroenteritis Host United Kingdom in 1998 United Kingdom Public Gi00543 001457_GCAT 85569 232 5000 Sanger Institute Sanger Institute Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella typhimurium BACTERIAL Salmonella enterica Typhimurium DT2 Typhimurium Genome PROTEOBACTERIA-GAMMA incomplete Facultative, Motile, Chemoorganotroph, Pathogen, Rod-shaped Medical, Human Pathogen, Cattle Pathogen, Animal Pathogen Food poisoning, Salmonellosis, Gastroenteritis Host United Kingdom Public Gi01230 001458_GCAT 602 4917 Sanger Institute Sanger Institute, Institute for Animal Health Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Infantis Infantis Genome PROTEOBACTERIA-GAMMA incomplete Facultative, Motile, Chemoorganotroph, Pathogen, Rod-shaped Medical, Human Pathogen Food poisoning, Salmonellosis, Gastroenteritis Host United Kingdom Public Gi01231 001459_GCAT 595 Sanger Institute Sanger Institute, Institute for Animal Health Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Hadar Hadar Genome PROTEOBACTERIA-GAMMA incomplete Facultative, Motile, Chemoorganotroph, Pathogen, Rod-shaped Medical, Human Pathogen Food poisoning, Salmonellosis, Gastroenteritis Host United Kingdom Public Gi01232 001460_GCAT 149385 Sanger Institute Sanger Institute, Institute for Animal Health Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella typhimurium BACTERIAL Salmonella enterica Typhimurium SL1344 Typhimurium NCTC 13347 Genome PROTEOBACTERIA-GAMMA complete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Human Pathogen Food poisoning, Salmonellosis, Gastroenteritis Host United Kingdom Public Gi00544 001461_GCAT 216597 345 5000 1 Sanger Institute Sanger Institute, Univ of Glasgow, Univ of Cambridge, Institute for Animal Health, PHLS Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella typhimurium BACTERIAL Salmonella enterica Typhimurium D23580 Typhimurium Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Human Pathogen Food poisoning, Salmonellosis, Gastroenteritis Host United Kingdom Public Gi01682 001462_GCAT 602 5466 Sanger Institute Sanger Institute, Institute for Animal Health Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Agona SL483 Agona Genome PROTEOBACTERIA-GAMMA Draft incomplete Facultative, Motile, Chemoorganotroph, Rod-shaped, Nontyphoidal Medical, Human Pathogen Salmonellosis, Food poisoning, Gastroenteritis Food, Soil, Aquatic, Host USA Public Gi01620 001463_GCAT 454166 20063 4800 NZ_ABEK00000000 TIGR TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Dublin CT_02021853 Dublin Genome PROTEOBACTERIA-GAMMA incomplete Facultative, Motile, Chemoorganotroph, Rod-shaped, Nontyphoidal Medical, Human Pathogen Salmonellosis, Food poisoning, Gastroenteritis Food, Soil, Aquatic, Host USA Public Gi01621 001464_GCAT 439851 19467 TIGR TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Hadar RI_05P066 Hadar ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Facultative, Motile, Chemoorganotroph, Rod-shaped, Nontyphoidal Medical, Human Pathogen Salmonellosis, Food poisoning, Gastroenteritis Food, Soil, Aquatic, Host USA 52 Public Gi01622 001465_GCAT 465516 20593 4793 NZ_ABFG00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Heidelberg SL476, CVM30485 Heidelberg Genome PROTEOBACTERIA-GAMMA Draft incomplete Facultative, Motile, Chemoorganotroph, Rod-shaped, Nontyphoidal Medical, Human Pathogen Salmonellosis, Food poisoning, Gastroenteritis Food, Soil, Aquatic, Host USA Public Gi01623 001466_GCAT 454169 20045 5100 NZ_ABEM00000000 TIGR TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Heidelberg SL486, CVM30485 Heidelberg Genome PROTEOBACTERIA-GAMMA Draft incomplete Facultative, Motile, Chemoorganotroph, Rod-shaped, Nontyphoidal Medical, Human Pathogen Salmonellosis, Food poisoning, Gastroenteritis Food, Soil, Aquatic, Host USA Public Gi01624 001467_GCAT 454164 20065 4700 NZ_ABEL00000000 TIGR TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica I CVM23701, S4,[5],12:i: I 4,[5],12:i: Genome PROTEOBACTERIA-GAMMA Draft incomplete Facultative, Motile, Chemoorganotroph, Rod-shaped, Nontyphoidal Medical, Human Pathogen Salmonellosis, Food poisoning, Gastroenteritis Food, Soil, Aquatic, Host USA 52.3 Public Gi01625 001468_GCAT 440534 19465 4900 NZ_ABAO00000000 TIGR TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Javiana GA_MM04042433 Javiana ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Facultative, Motile, Chemoorganotroph, Rod-shaped, Nontyphoidal Medical, Human Pathogen Salmonellosis, Food poisoning, Gastroenteritis Food, Soil, Aquatic, Host USA Public Gi01626 001469_GCAT 454167 20049 4600 NZ_ABEH00000000 TIGR TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Kentucky CDC 191 Kentucky ABI Genome PROTEOBACTERIA-GAMMA incomplete incomplete Facultative, Motile, Chemoorganotroph, Rod-shaped, Nontyphoidal Medical, Human Pathogen Salmonellosis, Food poisoning, Gastroenteritis Food, Soil, Aquatic, Host USA Public Gi01627 001470_GCAT 454231 20069 TIGR TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Kentucky CVM29188 Kentucky ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Facultative, Motile, Chemoorganotroph, Rod-shaped, Nontyphoidal Medical, Human Pathogen Salmonellosis, Food poisoning, Gastroenteritis Food, Soil, Aquatic, Host USA 51.9 Public Gi01628 001471_GCAT 439842 19457 5000 NZ_ABAK00000000 TIGR TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Newport SL254 Newport Genome PROTEOBACTERIA-GAMMA Draft incomplete Facultative, Motile, Chemoorganotroph, Rod-shaped, Nontyphoidal Medical, Human Pathogen Salmonellosis, Food poisoning, Gastroenteritis Food, Soil, Aquatic, Host MDR strain from one of two distinct lineages of the Newport serovar USA Public Gi01629 001472_GCAT 108619 18747 4800 NZ_ABEN00000000 TIGR TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Newport SL317 Newport Genome PROTEOBACTERIA-GAMMA Draft incomplete Facultative, Motile, Chemoorganotroph, Rod-shaped, Nontyphoidal Medical, Human Pathogen Salmonellosis, Food poisoning, Gastroenteritis Food, Soil, Aquatic, Host USA Public Gi01630 001473_GCAT 108619 20047 4900 NZ_ABEW00000000 TIGR TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Saint Paul SARA23 Saint Paul Genome PROTEOBACTERIA-GAMMA Draft incomplete Facultative, Motile, Chemoorganotroph, Rod-shaped, Nontyphoidal Medical, Human Pathogen Salmonellosis, Food poisoning, Gastroenteritis Food, Soil, Aquatic, Host USA 52.4 Public Gi01631 001474_GCAT 439846 19461 4800 NZ_ABAM00000000 TIGR TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Saint Paul SARA29 Saint Paul Genome PROTEOBACTERIA-GAMMA Draft incomplete Facultative, Motile, Chemoorganotroph, Rod-shaped, Nontyphoidal Medical, Human Pathogen Salmonellosis, Food poisoning, Gastroenteritis Food, Soil, Aquatic, Host USA 52.2 Public Gi01632 001475_GCAT 439847 19463 4900 NZ_ABAN00000000 TIGR TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Schwarzengrund CVM19633 Schwarzengrund Genome PROTEOBACTERIA-GAMMA Draft incomplete Facultative, Motile, Chemoorganotroph, Rod-shaped, Nontyphoidal Medical, Human Pathogen Salmonellosis, Food poisoning, Gastroenteritis Food, Soil, Aquatic, Host USA 52.9 Public Gi01633 001476_GCAT 439843 19459 4700 NZ_ABAL00000000 TIGR TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Schwarzengrund SL486 SL480 (DBS_GA_F25499) Schwarzengrund ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Facultative, Motile, Chemoorganotroph, Rod-shaped, Nontyphoidal Medical, Human Pathogen Salmonellosis, Food poisoning, Gastroenteritis Food, Soil, Aquatic, Host USA Public Gi01634 001477_GCAT 340190 20071 4800 NZ_ABEJ00000000 TIGR TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Virchow FCF_353617-2 Virchow Genome PROTEOBACTERIA-GAMMA Draft incomplete Facultative, Motile, Chemoorganotroph, Rod-shaped, Nontyphoidal Medical, Human Pathogen Salmonellosis, Food poisoning, Gastroenteritis, Bacteremia, Monoarthritis, Cholecystitis Food, Soil, Aquatic, Host USA Public Gi01635 001478_GCAT 48409 20595 4858 NZ_ABFH00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Weltevreden HI NO5-537 Weltevreden ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Facultative, Motile, Chemoorganotroph, Rod-shaped, Nontyphoidal Medical, Human Pathogen Salmonellosis, Food poisoning, Gastroenteritis, Foodborne nontyphoidal salmonellosis Food, Soil, Aquatic, Host USA 52 Public Gi01636 001479_GCAT 465518 20591 5047 NZ_ABFF00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella typhimurium BACTERIAL Salmonella enterica Typhimurium TR7095 Typhimurium Genome PROTEOBACTERIA-GAMMA incomplete Facultative, Motile, Chemoorganotroph, Rod-shaped Medical, Human Pathogen Salmonellosis, Food poisoning, Gastroenteritis Food, Soil, Aquatic, Host USA Public Gi00545 001480_GCAT 178328 280 4500 Washington Univ TIGR, Washington Univ WASHU webmaster@genome.wustl.edu Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Serratia Serratia marcescens BACTERIAL Serratia marcescens Db11 Genome PROTEOBACTERIA-GAMMA complete Pathogen, Facultative, Motile, Rod-shaped, Aerobe Medical, Human Pathogen Urinary infection, Respiratory infection, Nosocomial infection Intestinal microflora 37 United Kingdom 59 Public Gi00549 001481_GCAT 273526 406 4600 Sanger Institute Sanger Institute, CIML Wellcome Trust, CNRS Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Cyanobacteria Oscillatoriales unclassified Schizothrix Schizothrix sp. CCMEE 6131 BACTERIAL Schizothrix gebeleni A Genome CYANOBACTERIA incomplete Filament-shaped, Autotroph Environmental, Stromatolite formation, Biogeochemical None High-light region of stromatolites less than 30micrometer from the surface/water interface of the mat USA Public Gi01589 001482_GCAT 240294 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Cyanobacteria Oscillatoriales unclassified Schizothrix Schizothrix sp. CCMEE 6131 BACTERIAL Schizothrix gebeleni B Genome CYANOBACTERIA incomplete Filament-shaped, Autotroph Environmental, Stromatolite formation, Biogeochemical None Deeper 1mm depth lower-light regions of the stromatolite mat USA Public Gi01590 001483_GCAT 240294 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Cyanobacteria unclassified unclassified unclassified unclassified BACTERIAL Solentia sp Genome CYANOBACTERIA incomplete Foccus-shaped, Endolithic Environmental, Stromatolite formation, Biogeochemical None USA Public Gi01591 001484_GCAT Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria unclassified unclassified unclassified unclassified BACTERIAL Sulfate-Reducing Bacteria sp. A Genome PROTEOBACTERIA-DELTA incomplete Environmental, Stromatolite formation, Biogeochemical None USA Public Gi01592 001485_GCAT Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria unclassified unclassified unclassified unclassified BACTERIAL Sulfate-Reducing Bacterium sp. B Genome PROTEOBACTERIA-DELTA incomplete Environmental, Stromatolite formation, Biogeochemical None USA Public Gi01593 001486_GCAT Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria unclassified unclassified unclassified unclassified unclassified BACTERIAL Sulfur-Oxidizing Bacteria sp. Genome incomplete Sulfur oxidizer Environmental, Stromatolite formation, Biogeochemical None USA Public Gi01594 001487_GCAT Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella baltica BACTERIAL Shewanella baltica OS223 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Anaerobe, Rod-shaped, Motile, Facultative Biotechnological None Marine 4 Baltic Sea USA 46 Public Gi02027 002656_GCAT 407976 17985 640963050 5112 4235 NZ_ABAU00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Chloroflexi Chloroflexales Oscillochloridaceae Oscillochloris Oscillochloris sp. A19 BACTERIAL Oscillochloris sp. UdG9002 Genome CHLOROFLEXI incomplete Anaerobe, Rod-shaped, Phototroph Biotechnological None Aquatic USA Public Gi02028 002657_GCAT 104175 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Natranaerobiales Natranaerobiaceae Natranaerobius Natranaerobius thermophilus BACTERIAL Natranaerobius thermophilum JW/NM-WN-LFT Genome FIRMICUTES incomplete incomplete Anaerobe, Rod-shaped, Halophile, Alkaliphile, Thermophile Biotechnological None Aquatic Soda lakes of the Wadi An Natrun, Egypt USA Public Gi02029 002658_GCAT 375929 20207 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp. BACTERIAL Desulfovibrio sp H0407_12.1Lac Genome PROTEOBACTERIA-DELTA incomplete Anaerobe, Sulfate reducer, Rod-shaped, Motile Biotechnological, Bioremediation, Environmental None Aquatic USA Public Gi02030 002659_GCAT 885 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio desulfuricans BACTERIAL Desulfovibrio desulfuricans 27774 Genome PROTEOBACTERIA-DELTA incomplete Anaerobe, Sulfate reducer, Rod-shaped, Motile Biotechnological, Bioremediation, Environmental None Aquatic USA Public Gi02266 002982_GCAT 876 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio vulgaris BACTERIAL Desulfovibrio vulgaris Miyazaki F Genome PROTEOBACTERIA-DELTA incomplete Anaerobe, Sulfate reducer, Rod-shaped, Motile Biotechnological, Bioremediation, Environmental None Aquatic USA Public Gi02267 002983_GCAT 883 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria unclassified unclassified unclassified unclassified unclassified BACTERIAL Selenospirillum indicus S5 Genome incomplete Anaerobe, Selenate reducer Biotechnological, Bioremediation, Environmental None Aquatic USA Public Gi02042 002689_GCAT Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Pseudonocardiaceae Pseudonocardia Pseudonocardia dioxanivorans BACTERIAL Pseudonocardia dioxanivorans CB1190T ATCC 55486T, DSM 44775T Genome ACTINOBACTERIA incomplete Grows on ethers, Nitrogen fixation Biotechnological, Environmental, Bioremediation, Antibiotic production None Sludge, Aquatic Industrial sludge contaminated with 1,4-dioxane USA 74 Public Gi02043 002691_GCAT 240495 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Pseudonocardiaceae Pseudonocardia Pseudonocardia sp. BACTERIAL Pseudonocardia sp #1 Ants Genome ACTINOBACTERIA incomplete incomplete Symbiotic, Mesophile Biotechnological, Antibiotic production None Host USA Public Gi02343 003065_GCAT 60912 Univ of Wisconsin-Madison NSF Currie C currie@bact.wisc.edu Bacteria Actinobacteria Actinomycetales Pseudonocardiaceae Pseudonocardia Pseudonocardia sp. BACTERIAL Pseudonocardia sp #2 Ants Genome ACTINOBACTERIA incomplete incomplete Symbiotic, Mesophile Biotechnological, Antibiotic production None Host USA Public Gi02344 003066_GCAT 60912 Univ of Wisconsin-Madison NSF Currie C currie@bact.wisc.edu Bacteria Actinobacteria Actinomycetales Pseudonocardiaceae Pseudonocardia Pseudonocardia sp. BACTERIAL Pseudonocardia sp #3 Ants Genome ACTINOBACTERIA incomplete incomplete Symbiotic, Mesophile Biotechnological, Antibiotic production None Host USA Public Gi02345 003067_GCAT 60912 Univ of Wisconsin-Madison NSF Currie C currie@bact.wisc.edu Bacteria Actinobacteria Actinomycetales Pseudonocardiaceae Pseudonocardia Pseudonocardia saturnea BACTERIAL Pseudonocardia saturnea Ants Genome ACTINOBACTERIA incomplete incomplete Symbiotic, Mesophile Biotechnological, Antibiotic production None Host USA Public Gi02346 003068_GCAT 33909 Univ of Wisconsin-Madison NSF Currie C currie@bact.wisc.edu Archaea Euryarchaeota Methanococcales Methanococcaceae Methanothermococcus Methanothermococcus okinawensis ARCHAEAL Methanothermococcus okinawensis IH1T JCM 11175T, DSM 14208T Genome EURYARCHAEOTA-METHANOCOCCI incomplete Thermophile, Methanogen, Motile, Coccus-shaped, Anaerobe, Autotroph, Lithotroph Biotechnological None Hydrothermal vent, Aquatic, Deep sea 4.5-8.5 40 - 75 Deep-sea hydrothermal vent chimney at the Iheya Ridge in the Okinawa Trough Japan USA 33.5 Public Gi02044 002692_GCAT 155863 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Archaea Euryarchaeota Methanococcales Methanocaldococcaceae Methanotorris Methanotorris igneus ARCHAEAL Methanotorris igneus Kol5 DSM 5666 Genome EURYARCHAEOTA-METHANOCOCCI incomplete Thermophile, Hyperthermophile, Chemolithoautotroph, Methanogen, Lithotroph Biotechnological None Marine, Submarine 45 - 91 Shallow submarine vent system at the Kolbeinsey ridge Iceland USA Public Gi02045 002693_GCAT 2189 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Archaea Euryarchaeota Methanococcales Methanocaldococcaceae Methanotorris Methanotorris formicicus ARCHAEAL Methanotorris formicicus Mc-S-70 JCM 11930T, ATCC BAA-687T Genome EURYARCHAEOTA-METHANOCOCCI incomplete Thermophile, Hyperthermophile, Methanogen, Coccus-shaped, Anaerobe, Autotroph, Lithotroph Biotechnological None 6-8.5 55 - 83 Black smoker chimney at the Kairei field in the Central Indian Ridge USA 33.3 Public Gi02046 002694_GCAT 213185 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Archaea Euryarchaeota Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus fervens ARCHAEAL Methanocaldococcus fervens AG86T DSM 4213T Genome EURYARCHAEOTA-METHANOCOCCI incomplete Autotroph, Thermophile, Hyperthermophile, Methanogen, Piezophile, Coccus-shaped, Motile, Lithotroph Biotechnological None Deep sea, Aquatic, Marine 6.5 49 - 89 Deep-sea hydrothermal chimney sample collected on the East Pacific Rise at a depth of 2600m USA 31 Public Gi02047 002695_GCAT 83171 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Archaea Euryarchaeota Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus infernus ARCHAEAL Methanocaldococcus infernus ME DSM 11812T Genome EURYARCHAEOTA-METHANOCOCCI incomplete Autotroph, Thermophile, Hyperthermophile, Methanogen, Coccus-shaped, Motile, Lithotroph Biotechnological None Deep sea, Marine, Aquatic 6.5 55 - 91 Deep-sea hydrothermal chimney sample collected on the Mid-Atlantic Ridge at a depth of 3000m USA 33 Public Gi02048 002696_GCAT 67760 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Archaea Euryarchaeota Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus vulcanius ARCHAEAL Methanocaldococcus vulcanius M7 DSM 12094T Genome EURYARCHAEOTA-METHANOCOCCI incomplete Autotroph, Thermophile, Hyperthermophile, Coccus-shaped, Motile, Piezophile Biotechnological None Marine, Deep sea 6.5 49 - 89 Deep-sea hydrothermal chimney sample collected on the East Pacific Rise at a depth of 2600m USA 31 Public Gi02049 002697_GCAT 73913 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Archaea Euryarchaeota Methanococcales unclassified unclassified hyperthermophilic methanogen FS406-22 ARCHAEAL Methanocaldococcus sp FS406-22 Genome EURYARCHAEOTA-METHANOCOCCI incomplete Methanogen, Thermophile, Piezophile, Hyperthermophile, Nitrogen fixation, Lithotroph Biotechnological, Ecological None Deep sea, Hydrothermal vent, Marine 90 Deep-sea hydrothermal vent from Pacific Ocean Axial volcano on the Juan de Fuca Ridge USA Public Gi02050 002698_GCAT 412882 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Caulobacterales Caulobacteraceae Asticcacaulis Asticcacaulis biprosthecium BACTERIAL Asticcacaulis biprosthecium Genome PROTEOBACTERIA-ALPHA incomplete None Aquatic USA Public Gi02051 002699_GCAT 76891 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Caulobacterales Caulobacteraceae Asticcacaulis Asticcacaulis excentricus BACTERIAL Asticcacaulis excentricus Genome PROTEOBACTERIA-ALPHA incomplete None Aquatic USA Public Gi02052 002700_GCAT 78587 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas subvibrioides BACTERIAL Brevundimonas subvibrioides Genome PROTEOBACTERIA-ALPHA incomplete None Aquatic USA Public Gi02053 002701_GCAT 74313 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Hyphomicrobiaceae Ancalomicrobium Ancalomicrobium adetum BACTERIAL Ancalomicrobium adetum Genome PROTEOBACTERIA-ALPHA incomplete Aerobe, Chemoorganotroph None Aquatic USA Public Gi02054 002702_GCAT 213680 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Hyphomicrobiaceae Hyphomicrobium Hyphomicrobium denitrificans BACTERIAL Hyphomicrobium denitrificans Genome PROTEOBACTERIA-ALPHA incomplete None USA Public Gi02055 002703_GCAT 53399 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Hyphomicrobiaceae Rhodomicrobium Rhodomicrobium vannielii BACTERIAL Rhodomicrobium vannielii Genome PROTEOBACTERIA-ALPHA incomplete incomplete Photoheterotroph None USA Public Gi02056 002704_GCAT 1069 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Comamonadaceae Diaphorobacter Diaphorobacter sp. ZY-2006b BACTERIAL Diaphorobacter sp TPSY Genome PROTEOBACTERIA-BETA incomplete None USA Public Gi02057 002705_GCAT 238749 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Neisseriales Neisseriaceae Stenoxybacter Stenoxybacter acetivorans BACTERIAL Cosmobacter millennium 2002 Genome PROTEOBACTERIA-BETA incomplete Autotroph, Iron oxidizer, Anaerobe Biotechnological, Bioremediation None Soil 7.25 37 USA 63.8 Public Gi02058 002706_GCAT 206351 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhodocyclales Rhodocyclaceae Azospira Azospira sp. WST6-3 BACTERIAL Azospira suillum PS Genome PROTEOBACTERIA-BETA incomplete Diazotroph None USA Public Gi02059 002707_GCAT 146937 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Archaea Euryarchaeota Halobacteriales Halobacteriaceae Natrialba Natrialba magadii ARCHAEAL Natrialba magadii ATCC 43099 ATCC 43099 Genome EURYARCHAEOTA-HALOBACTERIA incomplete Alkaliphile None USA Public Gi02060 002708_GCAT 13769 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Aquificae Aquificales unclassified Thermovibrio Thermovibrio ammonificans BACTERIAL Thermovibrio ammonificans HB-1T DSM 15698 DSM 15698T, JCM 12110T Genome AQUIFICAE incomplete Thermophile, Anaerobe, Chemolithoautotroph, Motile, Rod-shaped Biotechnological None Aquatic, Marine, Deep sea, Hydrothermal vent 5-7 60 - 80 Walls of an active deep-sea hydrothermal vent chimney on the East Pacific Rise at 9 degrees 50'N USA 54.6 Public Gi02061 002709_GCAT 228745 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax paradoxus BACTERIAL Variovorax paradoxus S110 Genome PROTEOBACTERIA-BETA incomplete None USA Public Gi02062 002710_GCAT 34073 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax paradoxus BACTERIAL Variovorax paradoxus EPS Genome PROTEOBACTERIA-BETA incomplete None USA Public Gi02063 002711_GCAT 34073 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Actinosynnemataceae Actinosynnema Actinosynnema mirum BACTERIAL Actinosynnema mirum 101, DSM 43827 ABI, 454 DSM 43827 Genome ACTINOBACTERIA incomplete incomplete Nocardicin A producer GEBA, Biotechnological, Antibiotic production, Tree of Life None Soil 28 Blade of grass from Raritan River NJ USA USA Public Gi02064 002712_GCAT 446462 19705 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Nocardiopsaceae Nocardiopsis Nocardiopsis dassonvillei BACTERIAL Nocardiopsis dassonvillei dassonvillei DSM 43111 ABI, 454 Genome ACTINOBACTERIA incomplete Aerobe, Lacks Mycolic acids, Pathogen GEBA, Medical, Human Pathogen, Tree of Life Actinomycetoma, Pulmonary infection Host, Blood 28 USA 64 Public Gi02065 002713_GCAT 446468 19709 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Dermabacteraceae Brachybacterium Brachybacterium faecium BACTERIAL Brachybacterium faecium 6-10, DSM 4810 ABI, 454 Genome ACTINOBACTERIA Draft incomplete Aerobe, Rod-shaped GEBA, Tree of Life None Soil 30 Poultry deep litter USA Public Gi02066 002714_GCAT 446465 17026 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Cellulomonadaceae Cellulomonas Cellulomonas flavigena BACTERIAL Cellulomonas flavigena 134, DSM 20109 ABI, 454 DSM 20109 Genome ACTINOBACTERIA incomplete incomplete Cellulose degrader, Xylan degrader, Rod-shaped, Facultative, Motile GEBA, Biofuels, Energy production, Biotechnological, Bioenergy, Tree of Life None Soil 30 USA 72 Public Gi02067 002715_GCAT 446466 19707 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Glycomycetaceae Stackebrandtia Stackebrandtia nassauensis BACTERIAL Stackebrandtia nassauensis LLR-40K-21, DSM 44728 ABI, 454 DSM 44728 Genome ACTINOBACTERIA incomplete incomplete Nonmotile, Aerobe GEBA, Tree of Life None Soil 28 Soil sample from Nassau Bahamas USA Public Gi02068 002716_GCAT 446470 19713 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Promicromonosporaceae Xylanimonas Xylanimonas cellulosilytica BACTERIAL Xylanimonas cellulosilytica XIL07, DSM 15894 ABI, 454 DSM 15894 Genome ACTINOBACTERIA Draft incomplete Cellulose degrader, Xylan degrader, Aerobe, Nonmotile, Coccus-shaped, Lacks Mycolic acids GEBA, Tree of Life None Soil Decaying tree in Salamanca Spain USA 73 Public Gi02069 002717_GCAT 446471 19715 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Sanguibacteraceae Sanguibacter Sanguibacter keddieii BACTERIAL Sanguibacter keddieii DSM 10542 ABI, 454 DSM 10542 Genome ACTINOBACTERIA Draft incomplete Rod-shaped, Facultative, Nonmotile GEBA, Tree of Life None Host Bovine blood USA Public Gi02151 002802_GCAT 446469 19711 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Syntrophomonadaceae Dethiosulfovibrio Dethiosulfovibrio peptidovorans BACTERIAL Dethiosulfovibrio peptidovorans SEBR 4207, DSM 11002 ABI, 454 DSM 11002 Genome AMINANAEROBIA incomplete incomplete Anaerobe, Halophile, Thiosulfate reducer, Mesophile, Rod-shaped, Nonsporulating, Motile GEBA, Tree of Life None Oil fields, Aquatic 7 42 Corroding offshore oil well in Congo USA 56 Public Gi02152 002804_GCAT 469381 20741 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Archaea Euryarchaeota Halobacteriales Halobacteriaceae Halogeometricum Halogeometricum borinquense ARCHAEAL Halogeometricum borinquense PR3, DSM 11551 ABI, 454 DSM 11551, ATCC 700274, JCM 10706 Genome EURYARCHAEOTA-HALOBACTERIA Draft incomplete Halophile, Pleomorphic-shaped, Motile, Mesophile, Aerobe, Nonsporulating GEBA, Tree of Life None Solar saltern 37 Solar salterns of Cabo Rojo Puerto Rico USA 59 Public Gi02153 002805_GCAT 469382 20743 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Rubrobacterales Conexibacteraceae Conexibacter Conexibacter woesei BACTERIAL Conexibacter woesei ID131577, DSM 14684 ABI, 454 DSM 14684, JCM 11494 Genome ACTINOBACTERIA incomplete incomplete Rod-shaped, Motile, Aerobe, Mesophile, Nonsporulating GEBA, Tree of Life None Soil 28 Forest soil in Gerenzano Italy USA 71 Public Gi02154 002806_GCAT 469383 20745 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Bacteroidetes Sphingobacteriales Flexibacteraceae Dyadobacter Dyadobacter fermentans BACTERIAL Dyadobacter fermentans NS 114, DSM 18053 ABI, 454 DSM 18053 Genome BACTEROIDETES incomplete incomplete Aerobe, Nonmotile, Mesophile, Nonsporulating, Rod-shaped GEBA, Tree of Life None Soil, Host 28 Surface sterilized stems from Zea mays USA 48 Public Gi02155 002807_GCAT 471854 20829 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Rubrobacterales Patulibacteraceae Patulibacter Patulibacter minatonensis BACTERIAL Patulibacter minatonensis KV-614, DSM 18081 ABI, 454 DSM 18081, NRRL B-24346, JCM 12834, NBRC 100761 Genome ACTINOBACTERIA incomplete incomplete Rod-shaped, Motile, Aerobe GEBA, Tree of Life None Soil 28 USA 72 Public Gi02156 002808_GCAT 298163 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Coriobacteriales Coriobacteriaceae Slackia Slackia heliotrinireducens BACTERIAL Slackia heliotrinireducens RHS1, DSM 20476 ABI, 454 DSM 20476, ATCC 29202, NCTC 11029, JCM 14554 Genome ACTINOBACTERIA Draft incomplete Anaerobe, Pyrrolizidine alkaloids metabolizer, Nonmotile, Nonsporulating, Rod-shaped, Mesophile GEBA, Tree of Life None 37 Sheep rumen USA 36.1 Public Gi02157 002809_GCAT 471855 20831 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Bacteroidetes Bacteroidales Rikenellaceae Alistipes Alistipes putredinis BACTERIAL Alistipes putredinis DSM 17216 DSM 17216 Genome BACTEROIDETES incomplete Anaerobe, Nonmotile, Nonsporulating, Rod-shaped Medical, Human Pathogen, Animal Pathogen, HGMI Appendicitis, Abscesses, Ovine foot rot Soil, Host, Human intestinal microflora Human feces USA Public Gi02070 002718_GCAT 445970 19655 Washington Univ NIH Bacteria Firmicutes Clostridiales Eubacteriaceae Anaerofustis Anaerofustis stercorihominis BACTERIAL Anaerofustis stercorihominis DSM 17244 DSM 17244 Genome FIRMICUTES incomplete Anaerobe, Rod-shaped, Nonsporulating, Non-Pathogen HGMI, Medical None Host, Human intestinal microflora Human feces USA Public Gi02071 002719_GCAT 445971 19657 Washington Univ NIH Bacteria Firmicutes Clostridiales Clostridiaceae Anaerotruncus Anaerotruncus colihominis BACTERIAL Anaerotruncus colihominis DSM 17241 DSM 17241 Genome FIRMICUTES incomplete Nonmotile, Anaerobe, Rod-shaped HGMI, Medical None Host, Human intestinal microflora Feces from a child USA Public Gi02072 002720_GCAT 445972 19659 Washington Univ NIH Bacteria Spirochaetes Spirochaetales Spirochaetaceae Borrelia Borrelia afzelii BACTERIAL Borrelia afzelii ACA-1 Genome SPIROCHAETES Draft incomplete Pathogen, Spiral-shaped, Motile, Nonsporulating, Aerobe Medical, Human Pathogen Lyme disease, Acrodermatitis chronica atrophicans Host Skin lesion from a Lyme disease patient in Europe in 1993 USA 28 Public Gi02073 002721_GCAT 445986 19841 1400 NZ_ABCU00000000 TIGR TIGR NIH-NIAID Bacteria Spirochaetes Spirochaetales Spirochaetaceae Borrelia Borrelia garinii BACTERIAL Borrelia garinii PBr Genome SPIROCHAETES incomplete Pathogen, Spiral-shaped, Motile, Nonsporulating, Aerobe Medical, Human Pathogen Lyme disease Host USA Public Gi02074 002722_GCAT 29519 TIGR TIGR NIH-NIAID Bacteria Spirochaetes Spirochaetales Spirochaetaceae Borrelia Borrelia valaisiana BACTERIAL Borrelia valaisiana VS116 Genome SPIROCHAETES Draft incomplete Pathogen, Spiral-shaped, Motile, Nonsporulating, Aerobe Medical, Human Pathogen Lyme disease Host USA 27.7 Public Gi02075 002723_GCAT 445987 19843 1300 NZ_ABCY00000000 TIGR TIGR NIH-NIAID Bacteria Spirochaetes Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi 156a Genome SPIROCHAETES Draft incomplete Pathogen, Spiral-shaped, Motile, Nonsporulating, Aerobe Medical, Human Pathogen Lyme disease Host USA 28.1 Public Gi02076 002724_GCAT 445983 19835 1500 NZ_ABCV00000000 TIGR TIGR NIH-NIAID Bacteria Spirochaetes Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi 29805 ABI Genome SPIROCHAETES incomplete Pathogen, Spiral-shaped, Motile, Nonsporulating, Aerobe Medical, Human Pathogen Lyme disease Host USA Public Gi02077 002725_GCAT 139 TIGR TIGR NIH-NIAID Bacteria Spirochaetes Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi ZS7 Genome SPIROCHAETES Draft incomplete Pathogen, Spiral-shaped, Motile, Nonsporulating, Aerobe Medical, Human Pathogen Lyme disease Host USA 28 Public Gi02078 002726_GCAT 445985 19839 1340 NZ_ABCX00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Spirochaetes Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi 118a Genome SPIROCHAETES incomplete Pathogen, Spiral-shaped, Motile, Nonsporulating, Aerobe, Mesophile Medical, Human Pathogen Lyme disease Host, Human skin Human skin in New York USA Public Gi02079 002727_GCAT 139 21001 TIGR TIGR NIH-NIAID Bacteria Spirochaetes Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi 72a Genome SPIROCHAETES incomplete Pathogen, Spiral-shaped, Motile, Nonsporulating, Aerobe, Mesophile Medical, Human Pathogen Lyme disease Host, Human skin Human skin in New York USA Public Gi02080 002728_GCAT 139 21003 TIGR TIGR NIH-NIAID Bacteria Spirochaetes Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi WI91-23 Genome SPIROCHAETES incomplete Pathogen, Spiral-shaped, Motile, Nonsporulating, Aerobe Medical, Human Pathogen Lyme disease Host USA Public Gi02270 002987_GCAT 139 TIGR TIGR NIH-NIAID Bacteria Spirochaetes Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi CA-11.2a Genome SPIROCHAETES incomplete Pathogen, Spiral-shaped, Motile, Nonsporulating, Aerobe Medical, Human Pathogen Lyme disease Host USA Public Gi02269 002986_GCAT 139 TIGR TIGR NIH-NIAID Bacteria Spirochaetes Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi 80a Genome SPIROCHAETES incomplete Pathogen, Spiral-shaped, Motile, Nonsporulating, Aerobe Medical, Human Pathogen Lyme disease Host USA Public Gi02081 002729_GCAT 139 TIGR TIGR NIH-NIAID Bacteria Spirochaetes Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi 94a Genome SPIROCHAETES incomplete Pathogen, Spiral-shaped, Motile, Nonsporulating, Aerobe, Mesophile Medical, Human Pathogen Lyme disease Host, Human skin Human skin in New York USA Public Gi02082 002730_GCAT 139 20999 TIGR TIGR NIH-NIAID Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia ubonensis BACTERIAL Burkholderia ubonensis Bu Genome PROTEOBACTERIA-BETA Draft incomplete Aerobe, Rod-shaped, Motile, Nonsporulating None Soil Northern Australia USA 67.3 Public Gi02083 002731_GCAT 441166 19539 6900 ABBE01000000 Naval Medical Research Center Read T http://www.umbi.umd.edu/~mbc/pages/read.htm Bacteria Bacteroidetes Flavobacteriales unclassified Candidatus Sulcia Candidatus Sulcia muelleri BACTERIAL Sulcia muelleri GWSS Leafhopper Genome BACTEROIDETES incomplete Symbiont Agricultural None Host USA Public Gi02084 002732_GCAT 444179 19617 Univ of Arizona Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium bartlettii BACTERIAL Clostridium bartlettii DSM 16795 DSM 16795, ATCC 14880 Genome FIRMICUTES incomplete Rod-shaped, Sporulating, Anaerobe HGMI, Medical None Host, Human intestinal microflora Human feces USA Public Gi02085 002733_GCAT 445973 19661 Washington Univ NIH Bacteria Actinobacteria Coriobacteriales Coriobacteriaceae Collinsella Collinsella stercoris BACTERIAL Collinsella stercoris DSM 13279 DSM 13279 Genome ACTINOBACTERIA incomplete Rod-shaped, Anaerobe, Nonmotile, Nonsporulating Medical, HGMI None Host 37 Human feces USA Public Gi02086 002734_GCAT 445975 19665 Washington Univ NIH Bacteria Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides stercoris BACTERIAL Bacteroides stercoris ATCC 43183 ATCC 43183 Genome BACTEROIDETES incomplete Rod-shaped, Anaerobe, Nonsporulating Medical, HGMI None Host 37 Human feces USA Public Gi02147 002798_GCAT 449673 19859 Washington Univ NIH Bacteria Firmicutes Clostridiales Lachnospiraceae Catenibacterium Catenibacterium mitsuokai BACTERIAL Catenibacterium mitsuokai DSM 15897 DSM 15897, JCM 10609 Genome FIRMICUTES incomplete Rod-shaped, Anaerobe, Nonsporulating, Nonmotile Medical, HGMI None Host Human feces USA Public Gi02148 002799_GCAT 451640 19923 Washington Univ NIH Bacteria Firmicutes Clostridiales Lachnospiraceae Roseburia Roseburia faecis BACTERIAL Roseburia faecalis M72/1 DSM 16840, NCIMB 14031 Genome FIRMICUTES incomplete Rod-shaped, Anaerobe, Nonsporulating, Motile Medical, HGMI None Host 37 Human feces USA Public Gi02149 002800_GCAT 451638 19925 Washington Univ NIH Bacteria Firmicutes Clostridiales Lachnospiraceae Ruminococcus Ruminococcus sp. GM2/1 BACTERIAL Ruminococcus sp. GM2/1 Genome FIRMICUTES incomplete Coccus-shaped, Anaerobe Medical, HGMI None Host Human feces USA Public Gi02150 002801_GCAT 451639 19927 Washington Univ NIH Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 BACTERIAL Pseudomonas syringae tomato T1 Genome PROTEOBACTERIA-GAMMA incomplete Rod-shaped, Aerobe, Motile, Mesophile, Heterotroph Agricultural Host, Plants, Soil United Kingdom Public Gi02087 002735_GCAT 323 19697 The Sainsbury Laboratory Bacteria Actinobacteria Actinomycetales Frankiaceae Frankia Frankia sp. EuI1c BACTERIAL Frankia sp EuI1c Genome ACTINOBACTERIA incomplete Aerobe, Mesophile, Chemoorganotroph, Nitrogen fixation, Non-Pathogen, Plant symbiont, Nonmotile, Sporulating Biotechnological, Agricultural None Host, Soil USA Public Gi02088 002736_GCAT 298654 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Frankiaceae Frankia Frankia sp. BACTERIAL Frankia sp BCU110501 Genome ACTINOBACTERIA incomplete Aerobe, Mesophile, Chemoorganotroph, Nitrogen fixation, Non-Pathogen, Plant symbiont, Nonmotile, Sporulating Biotechnological, Agricultural None Host, Soil USA Public Gi02089 002737_GCAT 1855 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Frankiaceae Frankia Frankia sp. R43 BACTERIAL Frankia sp R43 Genome ACTINOBACTERIA incomplete Aerobe, Mesophile, Chemoorganotroph, Nitrogen fixation, Non-Pathogen, Plant symbiont, Nonmotile, Sporulating Biotechnological, Agricultural None Host, Soil USA Public Gi02090 002738_GCAT 269536 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Frankiaceae Frankia Frankia sp. BMG5.12 BACTERIAL Frankia sp BMG5.12 Genome ACTINOBACTERIA incomplete Aerobe, Mesophile, Chemoorganotroph, Nitrogen fixation, Non-Pathogen, Plant symbiont, Nonmotile, Sporulating Biotechnological, Agricultural None Host, Soil USA Public Gi02091 002739_GCAT 222534 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Frankiaceae Frankia Frankia sp. BACTERIAL Frankia sp AmMr Genome ACTINOBACTERIA incomplete Aerobe, Mesophile, Chemoorganotroph, Nitrogen fixation, Non-Pathogen, Plant symbiont, Nonmotile, Sporulating Biotechnological, Agricultural None Host, Soil USA Public Gi02092 002740_GCAT 1855 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes unclassified unclassified Dethiobacter Dethiobacter alkaliphilus BACTERIAL Dethiobacter alkaliphilus AHT1 Genome FIRMICUTES incomplete Halophile, Alkaliphile Biotechnological None Soda lakes USA Public Gi02093 002741_GCAT 427926 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Micromonosporaceae Micromonospora Micromonospora aurantiaca BACTERIAL Micromonospora aurantiaca Genome ACTINOBACTERIA incomplete Polyisoprene rubber degrader, Sporulating, Aerobe Biotechnological None Soil, Aquatic 37 USA Public Gi02094 002742_GCAT 47850 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Micromonosporaceae unclassified actinomycete L5 BACTERIAL Micromonospora sp L5 Genome ACTINOBACTERIA incomplete Sporulating, Aerobe Biotechnological None Soil, Aquatic USA Public Gi02096 002796_GCAT 264577 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Sphingomonadales Sphingomonadaceae Zymomonas Zymomonas mobilis BACTERIAL Zymomonas mobilis mobilis CP4 Genome PROTEOBACTERIA-ALPHA incomplete Facultative, Motile, Rod-shaped, Ethanol production Biotechnological, Energy production, Biofuels, Bioenergy None Fermenting sugarcane juice USA Public Gi02097 002744_GCAT 120045 2000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Sphingomonadales Sphingomonadaceae Zymomonas Zymomonas mobilis BACTERIAL Zymomonas mobilis mobilis ATCC 10988 ATCC 10988 Genome PROTEOBACTERIA-ALPHA incomplete Facultative, Motile, Rod-shaped, Ethanol production Biotechnological, Energy production, Biofuels, Bioenergy None Fermenting Agave juice USA 48.3 Public Gi02098 002745_GCAT 120045 2000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Sphingomonadales Sphingomonadaceae Zymomonas Zymomonas mobilis BACTERIAL Zymomonas mobilis mobilis ATCC 29191 ATCC 29191 Genome PROTEOBACTERIA-ALPHA incomplete Facultative, Motile, Rod-shaped, Ethanol production Biotechnological, Energy production, Biofuels, Bioenergy None Fermenting Elaeis palm sap USA Public Gi02099 002746_GCAT 120045 2000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Sphingomonadales Sphingomonadaceae Zymomonas Zymomonas mobilis BACTERIAL Zymomonas mobilis pomaceae ATCC 29192 ATCC 29192 Genome PROTEOBACTERIA-ALPHA incomplete Facultative, Motile, Rod-shaped, Ethanol production Biotechnological, Energy production, Biofuels, Bioenergy None Sick cider USA 47.7 Public Gi02100 002747_GCAT 120044 2000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Sphingomonadales Sphingomonadaceae Zymomonas Zymomonas mobilis BACTERIAL Zymomonas mobilis NCIB 11163 NCIB 11163 Genome PROTEOBACTERIA-ALPHA incomplete Facultative, Motile, Rod-shaped, Ethanol production Biotechnological, Energy production, Biofuels, Bioenergy None Spoiled beer USA 45.1 Public Gi02101 002748_GCAT 542 2000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Methylococcales Methylococcaceae Methylomicrobium Methylomicrobium album BACTERIAL Methylomicrobium album BG8 Genome PROTEOBACTERIA-GAMMA incomplete Methane oxidation, Hydrocarbon degrading, Methanotroph Biotechnological None Soil 30 USA Public Gi02102 002749_GCAT 39775 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Methylocystaceae Methylosinus Methylosinus trichosporium BACTERIAL Methylosinus trichosporium OB3b ATCC 35070 Genome PROTEOBACTERIA-ALPHA incomplete Methanotroph, Pollutant degrader, TCE degrader, Methane oxidation Biotechnological, Bioremediation, Environmental None Soil USA Public Gi02103 002750_GCAT 426 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Chromatiales Chromatiaceae Allochromatium Allochromatium vinosum BACTERIAL Allochromatium vinosum DSM 180T DSM 180 Genome PROTEOBACTERIA-GAMMA incomplete Anaerobe, Phototroph, Sulfur oxidizer Biotechnological, Environmental, Hydrogen production None Aquatic 25 Ditch water USA Public Gi02104 002751_GCAT 1049 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Chromatiales Halothiobacillaceae Halothiobacillus Halothiobacillus neapolitanus BACTERIAL Halothiobacillus neapolitanus c2, ATCC 23641 ATCC 23641 Genome PROTEOBACTERIA-GAMMA incomplete Chemolithoautotroph Biotechnological None Sulfide-rich natural spa USA Public Gi02105 002752_GCAT 927 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales unclassified Thiomonas Thiomonas intermedia BACTERIAL Thiomonas intermedia Genome PROTEOBACTERIA-BETA incomplete Mixotroph, Acidophile, Sulfur oxidizer Biotechnological None USA Public Gi02106 002753_GCAT 926 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae SP195 9V ABI Genome FIRMICUTES incomplete incomplete Facultative, Pathogen, Nonmotile, Nonsporulating, Coccus-shaped, Alpha-hemolytic Medical, Human Pathogen Pneumonia, Meningitis, Otitis media Host, Nasopharyngeal microflora 30 - 35 Clinical isolate from Toulouse, France USA Public Gi02117 002768_GCAT 453363 20541 TIGR TIGR NIH-NIAID Tettelin H http://www.tigr.org/faculty/Tettelin_Herve/index.shtml Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae CDC3059-06 ABI Genome FIRMICUTES incomplete incomplete Facultative, Pathogen, Nonmotile, Nonsporulating, Coccus-shaped, Alpha-hemolytic, Mesophile Medical, Human Pathogen Pneumonia, Meningitis, Otitis media Host, Nasopharyngeal microflora 30 - 35 USA Public Gi02118 002769_GCAT 453365 20543 TIGR TIGR NIH-NIAID Tettelin H http://www.tigr.org/faculty/Tettelin_Herve/index.shtml Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae CDC0288-04 ABI Genome FIRMICUTES incomplete incomplete Facultative, Pathogen, Nonmotile, Nonsporulating, Coccus-shaped, Alpha-hemolytic, Mesophile Medical, Human Pathogen Pneumonia, Meningitis, Otitis media Host, Nasopharyngeal microflora 30 - 35 USA Public Gi02119 002770_GCAT 453364 20545 TIGR TIGR NIH-NIAID Tettelin H http://www.tigr.org/faculty/Tettelin_Herve/index.shtml Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae CDC1087-00 ABI Genome FIRMICUTES incomplete incomplete Facultative, Pathogen, Nonmotile, Nonsporulating, Coccus-shaped, Alpha-hemolytic, Mesophile Medical, Human Pathogen Pneumonia, Meningitis, Otitis media Host, Nasopharyngeal microflora 30 - 35 USA Public Gi02120 002771_GCAT 453361 20777 TIGR TIGR NIH-NIAID Tettelin H http://www.tigr.org/faculty/Tettelin_Herve/index.shtml Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae CDC1873-00 ABI Genome FIRMICUTES incomplete incomplete Facultative, Pathogen, Nonmotile, Nonsporulating, Coccus-shaped, Alpha-hemolytic Medical, Human Pathogen Pneumonia, Meningitis, Otitis media Host, Nasopharyngeal microflora 30 - 35 USA Public Gi02121 002772_GCAT 453362 20775 TIGR TIGR NIH-NIAID Tettelin H http://www.tigr.org/faculty/Tettelin_Herve/index.shtml Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae MLV-016 ABI Genome FIRMICUTES incomplete incomplete Facultative, Pathogen, Nonmotile, Nonsporulating, Coccus-shaped, Alpha-hemolytic Medical, Human Pathogen Pneumonia, Meningitis, Otitis media Host, Nasopharyngeal microflora 30 - 35 USA Public Gi02122 002773_GCAT 453366 20967 TIGR TIGR NIH-NIAID Tettelin H http://www.tigr.org/faculty/Tettelin_Herve/index.shtml Bacteria Spirochaetes Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi Bol26 ABI Genome SPIROCHAETES Draft incomplete Pathogen, Spiral-shaped, Motile, Nonsporulating, Aerobe Medical, Human Pathogen Lyme disease Host USA 28 Public Gi02123 002774_GCAT 445984 19837 1328 NZ_ABCW00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli SECEC SMS-3-5 Genome PROTEOBACTERIA-GAMMA Draft incomplete Rod-shaped, Motile, Nonsporulating, Facultative, Ciprofloxacin resistant, Moxifloxacin resistant Medical, Human Pathogen Diarrhea Host, Human intestinal microflora 37 Toxic-metal contaminated site Shipyard Creek Charleston South Carolina USA 50.5 Public Gi02124 002775_GCAT 439855 19469 5300 NZ_ABAQ00000000 NCBI, TIGR TIGR NIH-NIAID Ravel J http://www.tigr.org/faculty/Ravel_Jacques/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 EC4024 Genome PROTEOBACTERIA-GAMMA incomplete Rod-shaped, Motile, Nonsporulating, Facultative Medical, Human Pathogen Diarrhea Host, Human intestinal microflora USA Public Gi02125 002776_GCAT 444454 TIGR NIH-NIAID Ravel J http://www.tigr.org/faculty/Ravel_Jacques/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 EC4042 Genome PROTEOBACTERIA-GAMMA incomplete Rod-shaped, Motile, Nonsporulating, Facultative Medical, Human Pathogen Diarrhea Host, Human intestinal microflora USA Public Gi02126 002777_GCAT 444449 TIGR NIH-NIAID Ravel J http://www.tigr.org/faculty/Ravel_Jacques/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 EC4045 Genome PROTEOBACTERIA-GAMMA incomplete Rod-shaped, Motile, Nonsporulating, Facultative Medical, Human Pathogen Diarrhea Host, Human intestinal microflora USA Public Gi02127 002778_GCAT 444448 TIGR NIH-NIAID Ravel J http://www.tigr.org/faculty/Ravel_Jacques/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 EC4076 Genome PROTEOBACTERIA-GAMMA incomplete Rod-shaped, Motile, Nonsporulating, Facultative Medical, Human Pathogen Diarrhea Host, Human intestinal microflora USA Public Gi02128 002779_GCAT 444453 TIGR NIH-NIAID Ravel J http://www.tigr.org/faculty/Ravel_Jacques/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 EC4113 Genome PROTEOBACTERIA-GAMMA incomplete Rod-shaped, Motile, Nonsporulating, Facultative Medical, Human Pathogen Diarrhea Host, Human intestinal microflora USA Public Gi02129 002780_GCAT 444452 TIGR NIH-NIAID Ravel J http://www.tigr.org/faculty/Ravel_Jacques/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 EC4115 Genome PROTEOBACTERIA-GAMMA incomplete Rod-shaped, Motile, Nonsporulating, Facultative Medical, Human Pathogen Diarrhea Host, Human intestinal microflora USA Public Gi02130 002781_GCAT 444450 TIGR NIH-NIAID Ravel J http://www.tigr.org/faculty/Ravel_Jacques/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 EC4196 Genome PROTEOBACTERIA-GAMMA incomplete Rod-shaped, Motile, Nonsporulating, Facultative Medical, Human Pathogen Diarrhea Host, Human intestinal microflora USA Public Gi02131 002782_GCAT 444451 TIGR NIH-NIAID Ravel J http://www.tigr.org/faculty/Ravel_Jacques/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 EC4206 Genome PROTEOBACTERIA-GAMMA incomplete Rod-shaped, Motile, Nonsporulating, Facultative Medical, Human Pathogen Diarrhea Host, Human intestinal microflora USA Public Gi02132 002783_GCAT 444447 TIGR NIH-NIAID Ravel J http://www.tigr.org/faculty/Ravel_Jacques/ Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium perfringens BACTERIAL Clostridium perfringens type B - ATCC 3626 ABI ATCC 3626 Genome FIRMICUTES Draft incomplete Pathogen, Anaerobe, Rod-shaped, Sporulating, Motile Medical, Human Pathogen, Biothreat, Animal Pathogen, Poultry Pathogen, Swine Pathogen Gas gangrene, Food poisoning, Enterocolitis, Dysenteria, Enterotoxemia Host, Soil 37 Intestinal contents of a lamb USA 28 Public Gi02133 002784_GCAT 451754 20027 3896 NZ_ABDV00000000 NCBI, TIGR TIGR NIH-NIAID Paulsen I http://www.tigr.org/faculty/Paulsen_Ian/index.shtml Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium perfringens BACTERIAL Clostridium perfringens type C - JGS1495 ABI Genome FIRMICUTES Draft incomplete Pathogen, Anaerobe, Rod-shaped, Sporulating, Motile Medical, Human Pathogen, Biothreat, Animal Pathogen, Poultry Pathogen, Swine Pathogen Gas gangrene, Food poisoning, Enterocolitis, Dysenteria, Enterotoxemia Host, Soil USA Public Gi02134 002785_GCAT 445334 20025 3700 NZ_ABDU00000000 TIGR TIGR NIH-NIAID Paulsen I http://www.tigr.org/faculty/Paulsen_Ian/index.shtml Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium perfringens BACTERIAL Clostridium perfringens CPE F4969 ABI Genome FIRMICUTES Draft incomplete Pathogen, Anaerobe, Rod-shaped, Sporulating, Motile Medical, Human Pathogen, Biothreat, Animal Pathogen, Poultry Pathogen, Swine Pathogen Gas gangrene, Food poisoning, Enterocolitis, Dysenteria, Enterotoxemia Host, Soil USA Public Gi02135 002786_GCAT 451756 20031 3500 NZ_ABDX00000000 TIGR TIGR NIH-NIAID Paulsen I http://www.tigr.org/faculty/Paulsen_Ian/index.shtml Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium perfringens BACTERIAL Clostridium perfringens type D - JGS1721 Genome FIRMICUTES incomplete Pathogen, Anaerobe, Rod-shaped, Sporulating, Motile Medical, Human Pathogen, Biothreat, Animal Pathogen, Poultry Pathogen, Swine Pathogen Gas gangrene, Food poisoning, Enterocolitis, Dysenteria, Enterotoxemia Host, Soil USA Public Gi02136 002787_GCAT 107819 TIGR TIGR NIH-NIAID Paulsen I http://www.tigr.org/faculty/Paulsen_Ian/index.shtml Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium perfringens BACTERIAL Clostridium perfringens type E - JGS1987 ABI Genome FIRMICUTES Draft incomplete Pathogen, Anaerobe, Rod-shaped, Sporulating, Motile Medical, Human Pathogen, Biothreat, Animal Pathogen, Poultry Pathogen, Swine Pathogen Gas gangrene, Food poisoning, Enterocolitis, Dysenteria, Enterotoxemia Host, Soil USA Public Gi02137 002788_GCAT 451755 20029 4100 NZ_ABDW00000000 TIGR TIGR NIH-NIAID Paulsen I http://www.tigr.org/faculty/Paulsen_Ian/index.shtml Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium perfringens BACTERIAL Clostridium perfringens NCTC 8239 ABI Genome FIRMICUTES Draft incomplete Pathogen, Anaerobe, Rod-shaped, Sporulating, Motile Medical, Human Pathogen, Biothreat, Animal Pathogen, Poultry Pathogen, Swine Pathogen Gas gangrene, Food poisoning, Enterocolitis, Dysenteria, Enterotoxemia Host, Soil USA Public Gi02138 002789_GCAT 451757 20033 3300 NZ_ABDY00000000 TIGR TIGR NIH-NIAID Paulsen I http://www.tigr.org/faculty/Paulsen_Ian/index.shtml Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum Bf Genome FIRMICUTES incomplete Pathogen, Obligate anaerobe, Sporulating, Motile, Chemoorganotroph, Rod-shaped Medical, Human Pathogen, Biothreat Botulism Food 37 USA Public Gi02139 002790_GCAT 445336 20015 TIGR TIGR NIH-NIAID Paulsen I http://www.tigr.org/faculty/Paulsen_Ian/index.shtml Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum Iwanei E Genome FIRMICUTES incomplete Pathogen, Obligate anaerobe, Sporulating, Motile, Chemoorganotroph, Rod-shaped Medical, Human Pathogen, Biothreat Botulism Food 37 USA Public Gi02140 002791_GCAT 445338 20019 TIGR TIGR NIH-NIAID Paulsen I http://www.tigr.org/faculty/Paulsen_Ian/index.shtml Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum NCTC 2916 ABI Genome FIRMICUTES Draft incomplete Pathogen, Obligate anaerobe, Sporulating, Motile, Chemoorganotroph, Rod-shaped Medical, Human Pathogen, Biothreat Botulism 37 USA Public Gi02141 002792_GCAT 445335 20013 4000 NZ_ABDO00000000 TIGR TIGR NIH-NIAID Paulsen I http://www.tigr.org/faculty/Paulsen_Ian/index.shtml Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum type C - Eklund Genome FIRMICUTES Draft incomplete Non-Pathogen, Obligate anaerobe, Sporulating, Motile, Chemoorganotroph, Rod-shaped Medical None 37 USA Public Gi02142 002793_GCAT 445337 20017 3000 NZ_ABDQ00000000 TIGR TIGR NIH-NIAID Paulsen I http://www.tigr.org/faculty/Paulsen_Ian/index.shtml Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum type G ABI Genome FIRMICUTES Draft incomplete Pathogen, Obligate anaerobe, Sporulating, Motile, Chemoorganotroph, Rod-shaped Medical, Human Pathogen, Biothreat Botulism 37 USA Public Gi02143 002794_GCAT 447213 20021 4000 NZ_ABDS00000000 TIGR TIGR NIH-NIAID Paulsen I http://www.tigr.org/faculty/Paulsen_Ian/index.shtml Bacteria Proteobacteria Caulobacterales Caulobacteraceae Phenylobacterium Phenylobacterium zucineum BACTERIAL Phenylobacterium zucineum HLK1 CGMCC 1.3786, DSM=18354 Genome PROTEOBACTERIA-ALPHA incomplete Rod-shaped, Motile, Aerobe, Nonfermentative Medical Unknown Host 6.5-7.5 37 Human erythroleukemia cell line K562 China 71.2 Public Gi02455 002795_GCAT 284016 19931 Beijing Genomics Institute Bacteria Firmicutes Clostridiales Peptococcaceae Desulfosporosinus Desulfosporosinus sp. M1 BACTERIAL Desulfosporosinus sp Genome FIRMICUTES incomplete Sulfate reducer, Sporulating Biotechnological, Bioremediation, Environmental None Aquatic USA Public Gi02031 002660_GCAT 79206 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella piezotolerans BACTERIAL Shewanella piezotolerans WP3 Genome PROTEOBACTERIA-GAMMA incomplete Piezophile, Psychrophile Biotechnological None Aquatic, Deep sea Deep-sea sediment collected in the west Pacific China Public Gi01656 001491_GCAT 225849 17675 Beijing Genomics Institute Bacteria Proteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella benthica BACTERIAL Shewanella benthica KT99 Genome PROTEOBACTERIA-GAMMA incomplete Piezophile, Heterotroph, Rod-shaped, Nonmotile, Facultative Environmental, MMI None Marine, Deep sea USA Public Gi00885 001492_GCAT 314608 13387 JCVI J Craig Venter Institute, Scripps Institute of Oceanography Moore Foundation, NSF Yayanos AA http://mbrd.ucsd.edu/labpages/yayanos_lab.cfm Bacteria Proteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella putrefaciens BACTERIAL Shewanella putrefaciens 200 ABI 13x Genome PROTEOBACTERIA-GAMMA Draft incomplete Iron reducer, Anaerobe, Pathogen, Rod-shaped, Motile Biotechnological, Medical, Human Pathogen Endocarditis, Pneumonia Aquatic, Soil USA 44.4 Public Gi00554 001493_GCAT 399804 13392 640196205 4700 4120 NZ_AAWY00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella violacea BACTERIAL Shewanella violacea DSS12 Genome PROTEOBACTERIA-GAMMA complete Piezophile, Psychrophile, Rod-shaped, Motile, Facultative Biotechnological None Mud Mud taken at a depth of 5110m from the Ryukyu Trench in the Philippine Sea Japan Public Gi00557 001498_GCAT 60217 15729 4900 Kinki Univ, JAMSTEC, Keio Univ Nakasone K nakasone@hiro.kindai.ac.jp Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Shigella Shigella boydii BACTERIAL Shigella boydii BS512 18 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Rod-shaped, Motile, Nonsporulating, Facultative Medical, Human Pathogen Food poisoning, Dysenteria Host 37 12-year-old boy in Arizona USA 51 Public Gi01141 001499_GCAT 344609 15637 638341195 4900 4680 NZ_AAKA00000000 NCBI TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Shigella Shigella dysenteriae BACTERIAL Shigella dysenteriae 1012 4 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Rod-shaped, Motile, Nonsporulating, Facultative Medical, Human Pathogen Food poisoning Host 37 Bangledesh USA 50.8 Public Gi01276 001500_GCAT 358708 16194 638341196 3013 2782 NZ_AAMJ00000000 NCBI TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Shigella Shigella dysenteriae BACTERIAL Shigella dysenteriae M131649 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Rod-shaped, Facultative Medical, Biothreat, Human Pathogen Food poisoning, Dysenteria Host 37 United Kingdom 50 Public Gi00558 001501_GCAT 216598 346 4771 NCBI, Sanger Institute Sanger Institute, Institut Pasteur Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Shigella Shigella sonnei BACTERIAL Shigella sonnei 53G Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Facultative, Nonmotile, Chemoorganotroph, Rod-shaped Medical, Human Pathogen Dysenteria, Food poisoning Host United Kingdom 50 Public Gi00559 001502_GCAT 216599 347 Sanger Institute Sanger Institute, Institut Pasteur Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Chlamydiae Chlamydiales Simkaniaceae Simkania Simkania negevensis BACTERIAL Simkania negevensis Z Genome CHLAMYDIAE incomplete Pathogen Medical, Human Pathogen Pneumonia, Respiratory infection, Bronchiolitis Host, Wastewater USA Public Gi00771 001503_GCAT 83561 12528 TIGR Bacteria Proteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium aromaticivorans BACTERIAL Sphingomonas (Novosphingobium) aromaticivorans SMCC F199 Genome PROTEOBACTERIA-ALPHA incomplete Obligate aerobe, Rod-shaped, Motile, Degrades aromatic hydrocarbons Biotechnological, Medical, Animal Pathogen, Human Pathogen Death of coral reefs Aquatic, Soil, Host 410m depth from a borehole sample that was drilled at the Savannah River Site in South Carolina USA 65.2 Public Gi00563 001505_GCAT 279238 3800 3324 Joint Genome Institute DOE Janecki T janecki1@llnl.gov Bacteria Proteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas elodea BACTERIAL Sphingomonas (Pseudomonas) elodea Genome PROTEOBACTERIA-ALPHA incomplete Aerobe, Motile, Rod-shaped, Nonsporulating Biotechnological None Aquatic Stone Valley Lake in Pennsylvania USA Public Gi00712 001506_GCAT 179878 15728 Monsanto, Hiram College Bacteria Proteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. SKA58 BACTERIAL Sphingomonas sp SKA58 ABI Genome PROTEOBACTERIA-ALPHA Draft incomplete Rod-shaped, Aerobe, Motile, Heterotroph Environmental, MMI None Marine Seawater taken at a depth of 2-5m from the north Atlantic Ocean USA 64 Public Gi00886 001507_GCAT 314266 13584 638341199 3948 3914 NZ_AAQG00000000 NCBI, JCVI J Craig Venter Institute, Univ of Kalmar Moore Foundation Hagstrom A http://halia.hik.se/start.jsp?page=members/ake%20hagstrom Bacteria Firmicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma citri BACTERIAL Spiroplasma citri Genome FIRMICUTES incomplete Pathogen, Spiral-shaped, Motile, Facultative Agricultural, Plant Pathogen Citrus stubborn Host USA Public Gi00565 001508_GCAT 2133 13401 Central Washington Univ Central Washington Univ USDA, NSF Verhey S http://www.cwu.edu/~biology/faculty/verhey.html Bacteria Firmicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma kunkelii BACTERIAL Spiroplasma kunkelii CR2-3x Genome FIRMICUTES incomplete Pathogen, Spiral-shaped, Motile, Facultative Agricultural, Plant Pathogen Corn stunt Host 30 - 32 Maize leaves from a plant naturally infected in Costa Rica USA Public Gi00566 001509_GCAT 273035 203 1600 NCBI, Univ of Oklahoma, USDA, Ohio State Univ Univ of Oklahoma USDA Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Bacteria Firmicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma kunkelii BACTERIAL Spiroplasma kunkelii NM2 Genome FIRMICUTES incomplete Pathogen, Spiral-shaped, Motile, Facultative Agricultural, Plant Pathogen Corn stunt Host 30 - 32 USA 26 Public Gi00567 001510_GCAT 47834 Ohio State Univ Ohio State Univ Hogenhout S http://iris.biosci.ohio-state.edu/osuent/personnel/hogenhout.html Bacteria Cyanobacteria Oscillatoriales unclassified Arthrospira Arthrospira platensis BACTERIAL Arthrospira (Spirulina) platensis Genome CYANOBACTERIA incomplete Spiral-shaped Food industry, Dietary supplement None Aquatic African and Central and South American alkaline salt lakes China Public Gi00588 001511_GCAT 118562 13465 Human Genome Center, Beijing Zhang C-C cczhang@ir2cbm.cnrs-mrs.fr Bacteria Cyanobacteria Oscillatoriales unclassified Arthrospira Arthrospira sp. PCC 8005 BACTERIAL Arthrospira (Spirulina) sp. PCC 8005 Genome CYANOBACTERIA incomplete Biotechnological, Environmental None Aquatic France Public Gi01522 001512_GCAT 376219 5700 Genoscope Genoscope Barbe V vbarbe@genoscope.cns.fr Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus 930131 Genome FIRMICUTES incomplete Pathogen, Facultative, Coccus-shaped, Nonsporulating, Nonmotile Medical, Human Pathogen, Animal Pathogen, Cattle Pathogen, Poultry Pathogen Toxic-shock syndrome, Staphylococcal scarlet fever Host 30 - 37 USA 37 Proprietary Gi00591 001513_GCAT 1280 2564 2654 Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus ATCC 29213 Genome FIRMICUTES incomplete Pathogen, Facultative, Coccus-shaped, Nonsporulating, Nonmotile Medical, Human Pathogen, Animal Pathogen, Cattle Pathogen, Poultry Pathogen Toxic-shock syndrome, Staphylococcal scarlet fever Host 30 - 37 USA 37 Proprietary Gi00592 001514_GCAT 1280 2621 2858 Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus Genome FIRMICUTES complete Pathogen, Facultative, Coccus-shaped, Nonsporulating, Nonmotile Medical, Human Pathogen, Animal Pathogen, Cattle Pathogen, Poultry Pathogen Toxic-shock syndrome, Staphylococcal scarlet fever Host 30 - 37 USA 37 Proprietary Gi00590 001515_GCAT 1280 PathoGenome-TM Genome Therapeutics Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus 0582 Genome FIRMICUTES incomplete Pathogen, Facultative, Coccus-shaped, Nonsporulating, Nonmotile Medical, Human Pathogen, Animal Pathogen, Cattle Pathogen, Poultry Pathogen Toxic-shock syndrome, Staphylococcal scarlet fever Host 30 - 37 United Kingdom Public Gi01683 001518_GCAT 1280 3000 Sanger Institute Sanger Institute, Guy's and St Thomas' Hospital, St George's Medical School Guy's & St Thomas' Charity Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus EMRSA15 Genome FIRMICUTES incomplete Pathogen, Facultative, Coccus-shaped, Nonsporulating, Nonmotile Medical, Human Pathogen, Animal Pathogen, Cattle Pathogen, Poultry Pathogen Toxic-shock syndrome, Staphylococcal scarlet fever Host 30 - 37 United Kingdom Public Gi01684 001519_GCAT 1280 2800 Sanger Institute Sanger Institute, Imperial College Department of Health Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus carnosus BACTERIAL Staphylococcus carnosus TM300 Genome FIRMICUTES incomplete Non-Pathogen None Germany Public Gi00598 001520_GCAT 1281 2400 Univ of Wuerzburg, MWG-Biotech Gotz F friedrich.goetz@uni-tuebingen.de Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis BACTERIAL Staphylococcus epidermidis ATCC 14990 Genome FIRMICUTES incomplete Pathogen, Coccus-shaped, Nonsporulating, Nonmotile, Facultative Medical, Human Pathogen Toxic-shock syndrome, Staphylococcal scarlet fever Host 30 - 37 USA Proprietary Gi00600 001521_GCAT 1282 2377 2394 Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis BACTERIAL Staphylococcus epidermidis Genome FIRMICUTES complete Pathogen, Coccus-shaped, Nonsporulating, Nonmotile, Facultative Medical, Human Pathogen Toxic-shock syndrome, Staphylococcal scarlet fever Host 30 - 37 USA 32 Proprietary Gi00599 001522_GCAT 1282 PathoGenome-TM Genome Therapeutics Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus xylosus BACTERIAL Staphylococcus xylosus C2a DSM 20267 Genome FIRMICUTES incomplete Opportunistic Pathogen, Coccus-shaped, Nonmotile, Aerobe, Nonsporulating Medical, Biotechnological, Food industry None Host, Skin microflora France Public Gi01086 001523_GCAT 1288 15714 2800 Genoscope Genoscope, INRA Wincker P pwincker@genoscope.cns.fr Bacteria Proteobacteria Xanthomonadales Xanthomonadaceae Stenotrophomonas Stenotrophomonas maltophilia BACTERIAL Stenotrophomonas maltophilia K279a Genome PROTEOBACTERIA-GAMMA complete Pathogen, Aerobe, Nonfermentative Medical, Human Pathogen Nosocomial infection, Pulmonary infection Aquatic, Host, Soil, Plants United Kingdom 66.3 Public Gi00603 001524_GCAT 40324 6000 Sanger Institute Sanger Institute, Univ of Bristol Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Myxococcales Cystobacteraceae Stigmatella Stigmatella aurantiaca BACTERIAL Stigmatella aurantiaca DW4 /3-1 Genome PROTEOBACTERIA-DELTA incomplete Biotechnological None USA Proprietary Gi00604 001526_GCAT 378806 639857000 Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Bacteria Proteobacteria Myxococcales Cystobacteraceae Stigmatella Stigmatella aurantiaca BACTERIAL Stigmatella aurantica DW4/3-1 ABI Genome PROTEOBACTERIA-DELTA Draft incomplete Rod-shaped, Sporulating, Motile, Aerobe Biotechnological None Soil USA 67.4 Public Gi01037 001527_GCAT 378806 15671 10265 8543 NZ_AAMD00000000 NCBI TIGR Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae BACTERIAL Streptococcus agalactiae 18RS21 ABI Genome FIRMICUTES Draft incomplete Facultative, Pathogen, Nonmotile, Nonsporulating, Coccus-shaped Medical, Human Pathogen Septicemia, Pneumonia, Meningitis Host 37 USA 36.9 Public Gi01165 001528_GCAT 342613 15605 638341202 2193 2146 NZ_AAJO00000000 NCBI TIGR Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae BACTERIAL Streptococcus agalactiae 515 ABI Genome FIRMICUTES Draft incomplete Facultative, Pathogen, Nonmotile, Nonsporulating, Coccus-shaped Medical, Human Pathogen Septicemia, Pneumonia, Meningitis Host 37 USA 35 Public Gi01166 001529_GCAT 342614 15606 638341203 2088 2275 NZ_AAJP00000000 NCBI TIGR Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae BACTERIAL Streptococcus agalactiae CJB111 ABI Genome FIRMICUTES Draft incomplete Facultative, Pathogen, Nonmotile, Nonsporulating, Coccus-shaped Medical, Human Pathogen Septicemia, Pneumonia, Meningitis Host 37 USA 35 Public Gi01167 001530_GCAT 342617 15607 638341204 2105 2197 NZ_AAJQ00000000 NCBI TIGR Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae BACTERIAL Streptococcus agalactiae COH1 ABI Genome FIRMICUTES Draft incomplete Facultative, Pathogen, Nonmotile, Nonsporulating, Coccus-shaped Medical, Human Pathogen Septicemia, Pneumonia, Meningitis Host 37 Infected newborn with sepsis USA 35 Public Gi01669 001531_GCAT 342616 15609 638341205 2205 2376 NZ_AAJR00000000 NCBI TIGR Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae BACTERIAL Streptococcus agalactiae H36B ABI Genome FIRMICUTES Draft incomplete Facultative, Pathogen, Nonmotile, Nonsporulating, Coccus-shaped Medical, Human Pathogen Septicemia, Pneumonia, Meningitis Host 37 USA 35 Public Gi01168 001532_GCAT 342615 15608 638341206 2201 2376 NZ_AAJS00000000 NCBI TIGR Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus canis BACTERIAL Streptococcus canis FSL Z3-227 Genome FIRMICUTES incomplete Facultative, Pathogen, Nonmotile, Nonsporulating, Coccus-shaped Medical, Animal Pathogen Septicemia Host USA Public Gi01604 001533_GCAT 1329 2235 454 Life Sciences, Cornell Univ Stanhope MJ mjs297@cornell.edu Bacteria Firmicutes Bacillales Staphylococcaceae Staphylococcus Staphylococcus simiae BACTERIAL Staphylococcus simiae 7213 CCM 7213, LMG 22723 Genome FIRMICUTES incomplete Facultative, Nonmotile, Nonsporulating Host Gastrointestinal tracts of South American squirrel monkeys USA Public Gi01605 001534_GCAT 308354 2587 454 Life Sciences, Cornell Univ Stanhope MJ mjs297@cornell.edu Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus equi BACTERIAL Streptococcus equi 4047 Genome FIRMICUTES incomplete Pathogen, Nonmotile, Nonsporulating, Facultative, Coccus-shaped Medical, Animal Pathogen Strangles Host 37 United Kingdom 41 Public Gi00606 001535_GCAT 1336 69 2300 Sanger Institute Sanger Institute, Univ of Newcastle, Univ of Cambridge The Home of Rest for Horses Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus gallolyticus BACTERIAL Streptococcus gallolyticus NEM2135 Genome FIRMICUTES incomplete Nonmotile, Nonsporulating, Anaerobe Biotechnological None France Public Gi01038 001536_GCAT 315405 Institut Pasteur Trieu-Cuot P http://www.pasteur.fr/recherche/RAR/RAR2006/Bbpgp-en.html Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus iniae BACTERIAL Streptococcus iniae 9117 28.1x Genome FIRMICUTES incomplete Endemic, Beta-hemolytic, Pathogen, Nonmotile, Nonsporulating, Facultative Medical, Fish Pathogen, Human Pathogen Meningitis, Skin infection, Cellulitis Host Human clinical isolate USA Public Gi01537 001538_GCAT 386894 16831 BCM-HGSC BCM-HGSC Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis BACTERIAL Streptococcus mitis B6 Genome FIRMICUTES incomplete Pathogen Medical, Human Pathogen Endocarditis Host, Oral microflora Germany 40 Public Gi00609 001539_GCAT 365659 2140 Univ of Wuerzburg, AGOWA Hakenbeck R Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis BACTERIAL Streptococcus mitis NCTC 12261 Genome FIRMICUTES incomplete Pathogen, Nonmotile, Nonsporulating, Facultative Medical, Human Pathogen Endocarditis Host, Oral microflora USA 40 Public Gi00610 001540_GCAT 246201 173 2200 TIGR TIGR NIH-NIDCR Banerjei LC banerjei@tigr.org Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae Genome FIRMICUTES complete Facultative, Pathogen Medical, Human Pathogen Pneumonia Host USA 40 Proprietary Gi00611 001541_GCAT 1313 PathoGenome-TM Genome Therapeutics Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae TIGR4 454 ATCC-BAA-334 Genome FIRMICUTES Draft incomplete Pathogen, Nonmotile, Nonsporulating, Facultative Medical, Human Pathogen Pneumonia Host, Nasopharyngeal microflora Blood of a 30 year old male patient in Kongsvinger Norway USA 39.7 Public Gi01670 001542_GCAT 170187 13923 638341207 2160 1878 NZ_AAGY00000000 NCBI 454 Life Sciences 454 Life Sciences Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae serotype 6 Genome FIRMICUTES incomplete Facultative, Pathogen Medical, Human Pathogen Pneumonia Host USA 40 Public Gi00614 001543_GCAT 1313 Univ of Alabama Univ of Alabama NIH-NIAID Contact http://genome.microbio.uab.edu/strep/info/contact.htm Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae 23F (Spanish 23F-1) Genome FIRMICUTES incomplete Facultative, Pathogen, Nonmotile, Nonsporulating Medical, Human Pathogen, Pneumonia Host United Kingdom 40 Public Gi00612 001544_GCAT 216600 348 2200 Sanger Institute Sanger Institute, Univ of Glasgow, Univ of Leicester Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae INV104B (ST 227, serotype 1) Genome FIRMICUTES incomplete Facultative, Pathogen, Nonmotile, Nonsporulating Medical, Human Pathogen, Pneumonia Host United Kingdom 40 Public Gi01087 001545_GCAT 1313 2200 Sanger Institute Sanger Institute, Univ of Glasgow, Univ of Leicester Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae INV200 (ST 9, serotype 14) Genome FIRMICUTES incomplete Facultative, Pathogen, Nonmotile, Nonsporulating Medical, Human Pathogen, Pneumonia Host United Kingdom 40 Public Gi01088 001546_GCAT 1313 2200 NCBI, Sanger Institute Sanger Institute, Univ of Glasgow, Univ of Leicester Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae OXC141 (ST 180, serotype 3) Genome FIRMICUTES incomplete Facultative, Pathogen, Nonmotile, Nonsporulating Medical, Human Pathogen, Pneumonia Host United Kingdom 40 Public Gi01089 001547_GCAT 1313 2200 Sanger Institute Sanger Institute, Univ of Glasgow, Univ of Leicester Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae 670-6B 6B Genome FIRMICUTES incomplete Facultative, Pathogen, Nonmotile, Nonsporulating, Coccus-shaped, Alpha-hemolytic Medical, Human Pathogen Pneumonia, Meningitis, Otitis media Host, Nasopharyngeal microflora 30 - 35 USA 40 Public Gi00613 001548_GCAT 189423 292 2100 TIGR NIH-NIAID Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae SP3-BS71 Genome FIRMICUTES Draft incomplete Facultative, Pathogen, Coccus-shaped, Nonmotile, Nonsporulating Medical, Human Pathogen Pneumonia Host, Normal nasopharyngeal microflora Nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh USA 39.8 Public Gi01657 001549_GCAT 406556 17957 640963042 2000 2378 NZ_AAZZ00000000 West Penn Allegheny Health System Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae SP6-BS73 Genome FIRMICUTES Draft incomplete Facultative, Pathogen, Coccus-shaped, Nonmotile, Nonsporulating Medical, Human Pathogen Pneumonia Host, Normal nasopharyngeal microflora Nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh USA 39.6 Public Gi01658 001550_GCAT 406557 17959 640963056 2200 2507 NZ_ABAA00000000 West Penn Allegheny Health System Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae SP19-BS75 Genome FIRMICUTES Draft incomplete Facultative, Pathogen, Coccus-shaped, Nonmotile, Nonsporulating Medical, Human Pathogen Pneumonia Host, Normal nasopharyngeal microflora Nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh USA 39.6 Public Gi01659 001551_GCAT 406562 17969 640963051 2100 2480 NZ_ABAF00000000 West Penn Allegheny Health System Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae SP9-BS68 Genome FIRMICUTES Draft incomplete Facultative, Pathogen, Coccus-shaped, Nonmotile, Nonsporulating Medical, Human Pathogen Pneumonia Host, Normal nasopharyngeal microflora Nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh USA 39.6 Public Gi01660 001552_GCAT 406558 17961 640963054 2100 2429 NZ_ABAB00000000 West Penn Allegheny Health System Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae SP11-BS70 Genome FIRMICUTES Draft incomplete Facultative, Pathogen, Coccus-shaped, Nonmotile, Nonsporulating Medical, Human Pathogen Pneumonia Host, Normal nasopharyngeal microflora Nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh USA 39.7 Public Gi01661 001553_GCAT 406559 17963 640963055 2100 2365 NZ_ABAC00000000 West Penn Allegheny Health System Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae SP14-BS69 Genome FIRMICUTES Draft incomplete Facultative, Pathogen, Coccus-shaped, Nonmotile, Nonsporulating Medical, Human Pathogen Pneumonia Host, Normal nasopharyngeal microflora Nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh USA 39.6 Public Gi01662 001554_GCAT 406560 17965 640963053 2100 2807 NZ_ABAD00000000 West Penn Allegheny Health System Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae SP18-BS74 Genome FIRMICUTES Draft incomplete Facultative, Pathogen, Coccus-shaped, Nonmotile, Nonsporulating Medical, Human Pathogen Pneumonia Host, Normal nasopharyngeal microflora Nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh USA 39.7 Public Gi01663 001555_GCAT 406561 17967 640963048 2100 2415 NZ_ABAE00000000 West Penn Allegheny Health System Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae SP23-BS72 Genome FIRMICUTES Draft incomplete Facultative, Pathogen, Coccus-shaped, Nonmotile, Nonsporulating Medical, Human Pathogen Pneumonia Host, Normal nasopharyngeal microflora Nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh USA 39.7 Public Gi01664 001556_GCAT 406563 17971 640963052 2100 2416 NZ_ABAG00000000 West Penn Allegheny Health System Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes M49 591 ABI Genome FIRMICUTES Draft incomplete Pathogen, Facultative, Coccus-shaped, Nonmotile, Nonsporulating Medical, Human Pathogen Rheumatic fever Host Patient with a skin infection Germany 38 Public Gi00804 001558_GCAT 294934 13286 638341208 1327 1365 NZ_AAFV00000000 NCBI, Univ Hospital Rostock Univ of Wuerzburg, Univ Hospital Rostock Podbielski A andreas.podbielski@med.uni-rostock.de Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus salivarius BACTERIAL Streptococcus salivarius JIM8777 Genome FIRMICUTES incomplete Non-Pathogen, Coccus-shaped, Facultative, Nonmotile, Nonsporulating Medical None Host, Oral microflora France Public Gi01039 001559_GCAT 347253 15715 1800 Genoscope Genoscope, INRA Wincker P pwincker@genoscope.cns.fr Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus salivarius BACTERIAL Streptococcus salivarius JIM8780 Genome FIRMICUTES incomplete Non-Pathogen, Coccus-shaped, Facultative, Nonmotile, Nonsporulating Medical None Host, Oral microflora France Public Gi01040 001560_GCAT 347254 15724 1800 Genoscope Genoscope, INRA Wincker P pwincker@genoscope.cns.fr Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus sobrinus BACTERIAL Streptococcus sobrinus 6715 Genome FIRMICUTES incomplete Pathogen, Nonmotile, Nonsporulating, Facultative, Acid-producing, Coccus-shaped, Mesophile Medical, Human Pathogen Dental caries, Endocarditis Oral microflora, Host 37 USA Public Gi00617 001561_GCAT 246202 1420 2200 TIGR NIH-NIDCR Nelson KE http://www.tigr.org/~kenelson/ Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus suis BACTERIAL Streptococcus suis P1/7 Genome FIRMICUTES incomplete Pathogen, Nonmotile, Nonsporulating, Facultative Medical, Animal Pathogen, Swine Pathogen, Human Pathogen Meningitis, Endocarditis, Septicemia, Arthritis Host United Kingdom 40 Public Gi00619 001562_GCAT 218494 352 1700 Sanger Institute Sanger Institute, Univ of Cambridge, Univ of Newcastle, Univ of Warwick Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus suis BACTERIAL Streptococcus suis BM407 Genome FIRMICUTES incomplete Pathogen, Nonmotile, Nonsporulating, Facultative Medical, Animal Pathogen, Swine Pathogen, Human Pathogen Meningitis, Endocarditis, Septicemia, Arthritis Host United Kingdom 40 Public Gi01370 001563_GCAT 1307 2000 Sanger Institute Sanger Institute, Univ of Cambridge, Univ of Oxford, Univ of Montreal Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus suis BACTERIAL Streptococcus suis SC84 Genome FIRMICUTES incomplete Pathogen, Nonmotile, Nonsporulating, Facultative Medical, Animal Pathogen, Swine Pathogen, Human Pathogen Meningitis, Endocarditis, Septicemia, Arthritis Host United Kingdom 40 Public Gi01371 001564_GCAT 1307 2000 Sanger Institute Sanger Institute, Univ of Cambridge, Univ of Oxford, Univ of Montreal Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus suis BACTERIAL Streptococcus suis 89/1591 ABI Genome FIRMICUTES Draft incomplete Pathogen, Nonmotile, Nonsporulating, Facultative Medical, Human Pathogen, Swine Pathogen, Animal Pathogen Meningitis, Endocarditis, Septicemia, Arthritis Host 37 North America USA 41 Public Gi00618 001565_GCAT 286604 12417 638341209 1980 1896 NZ_AAFA00000000 NCBI, Joint Genome Institute Joint Genome Institute, Univ of Montreal DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus suis BACTERIAL Streptococcus suis 05HAH33 Genome FIRMICUTES incomplete Pathogen, Nonmotile, Nonsporulating, Facultative Medical, Human Pathogen, Swine Pathogen, Animal Pathogen Meningitis, Endocarditis, Septicemia, Arthritis Host China Public Gi01542 001566_GCAT 391297 17157 Beijing Institute of Genomics Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus suis BACTERIAL Streptococcus suis GZ1 Genome FIRMICUTES incomplete Pathogen, Nonmotile, Nonsporulating, Facultative Medical, Human Pathogen, Swine Pathogen, Animal Pathogen Meningitis, Arthritis, Pneumonia Host 37 China Public Gi01897 001569_GCAT 423211 18737 Chinese CDC Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus thermophilus BACTERIAL Streptococcus thermophilus ATCC BAA-491 Genome FIRMICUTES incomplete Facultative, Thermotolerant Food industry, Biotechnological None USA Public Gi00621 001570_GCAT 1308 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus uberis BACTERIAL Streptococcus uberis 0140J Genome FIRMICUTES complete Pathogen, Nonmotile, Nonsporulating, Facultative, Coccus-shaped Medical, Animal Pathogen, Cattle Pathogen Mastitis Host 37 United Kingdom 40 Public Gi00625 001571_GCAT 218495 353 1700 Sanger Institute Sanger Institute, Univ of Cambridge, Univ of Newcastle, Univ of Warwick Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Firmicutes Lactobacillales Streptococcaceae Streptococcus Streptococcus equi BACTERIAL Streptococcus equi zooepidemicus Genome FIRMICUTES incomplete Pathogen, Nonmotile, Nonsporulating, Facultative, Coccus-shaped Medical, Animal Pathogen, Cattle Pathogen, Swine Pathogen Opportunistic infection Host 37 United Kingdom Public Gi00607 001572_GCAT 40041 12988 2300 Sanger Institute Sanger Institute, Univ of Cambridge, Animal Health Trust HBLB Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Actinobacteria Actinomycetales Streptomycetaceae Streptomyces Streptomyces ambofaciens BACTERIAL Streptomyces ambofaciens ATCC 23877 ATCC 23877 Genome ACTINOBACTERIA incomplete Nonmotile, Sporulating, Aerobe, Filament-shaped Antibiotic production, Biotechnological None Soil 25 - 35 wild-type France 72 Public Gi00626 001573_GCAT 278992 93 8000 Genoscope Genoscope Bacteria Actinobacteria Actinomycetales Streptomycetaceae Streptomyces Streptomyces venezuelae BACTERIAL Streptomyces diversa Genome ACTINOBACTERIA complete Nonmotile, Sporulating, Aerobe, Filament-shaped Antibiotic production, Biotechnological None Soil USA Proprietary Gi00627 001574_GCAT 54571 Diversa, Celera Genomics Diversa Bacteria Actinobacteria Actinomycetales Streptomycetaceae Streptomyces Streptomyces scabiei BACTERIAL Streptomyces scabies 87-22 Genome ACTINOBACTERIA incomplete Nonmotile, Sporulating, Aerobe, Pathogen, Filament-shaped Antibiotic production, Biotechnological, Medical, Plant Pathogen, Agricultural Scab disease Soil 28 USA Public Gi00630 001575_GCAT 1930 12985 8100 Sanger Institute Cornell Univ, Sanger Institute USDA, NSF Loria R rl21@cornell.edu Bacteria Actinobacteria Actinomycetales Streptomycetaceae Streptomyces Streptomyces noursei BACTERIAL Streptomyces noursei ATCC 11455 Genome ACTINOBACTERIA incomplete Nonmotile, Sporulating, Aerobe, Filament-shaped, Nystatin producer Antibiotic production, Biotechnological, Nystatin producer None Soil Germany Proprietary Gi00628 001576_GCAT 316284 13659 Norwegian Univ of Science and Technology, QIAGEN QIAGEN Zotchev SB http://www.biotech.ntnu.no/molgen/members2/sergey.html Bacteria Actinobacteria Actinomycetales Streptomycetaceae Streptomyces Streptomyces peucetius BACTERIAL Streptomyces peucetius ATCC 27952 ATCC 27952 Genome ACTINOBACTERIA incomplete Sporulating, Nonmotile, Aerobe, Filament-shaped Antibiotic production, Biotechnological None Soil Korea Public Gi00629 001577_GCAT 316280 13658 IBR, Sunmoon Univ, Gene Chem Inc. MIC Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Sulfitobacter Sulfitobacter sp. GAI-109 BACTERIAL Sulfitobacter sp. GAI-109 Genome PROTEOBACTERIA-ALPHA incomplete DMSP degrader, Aerobe, Mesophile, Rod-shaped Environmental, MMI None Marine Surface seawater obtained off the coast of Georgia USA Public Gi00887 001578_GCAT 314268 13560 5000 JCVI J Craig Venter Institute, Univ of Georgia Moore Foundation Moran MA http://alpha.marsci.uga.edu/directory/mmoran.htm Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Sulfitobacter Sulfitobacter sp. EE-36 BACTERIAL Sulfitobacter sp. EE-36 ABI Genome PROTEOBACTERIA-ALPHA Draft incomplete Environmental, MMI None Surface water, Marine Surface waters of coastal Georgia USA 61 Public Gi00888 001579_GCAT 52598 13501 638341211 3547 3474 NZ_AALV00000000 NCBI, RoseoBase, JCVI Univ of Georgia, J Craig Venter Institute Moore Foundation Moran MA http://alpha.marsci.uga.edu/directory/mmoran.htm Bacteria Proteobacteria Rhodobacterales Rhodobacteraceae Sulfitobacter Sulfitobacter sp. NAS-14.1 BACTERIAL Sulfitobacter sp. NAS-14.1 ABI Genome PROTEOBACTERIA-ALPHA Draft incomplete Aerobe, Rod-shaped, Motile Environmental, MMI None Surface water, Marine Surface waters of the North Atlantic Ocean USA 61 Public Gi00889 001580_GCAT 314267 13591 638341212 4003 3962 NZ_AALZ00000000 NCBI, RoseoBase, JCVI J Craig Venter Institute, Univ of Georgia Moore Foundation Moran MA http://alpha.marsci.uga.edu/directory/mmoran.htm Bacteria Aquificae Aquificales Hydrogenothermaceae Sulfurihydrogenibium Sulfurihydrogenibium azorense BACTERIAL Sulfurihydrogenibium azorense Az-Fu1 JCM 12773, OCM 840 Genome AQUIFICAE complete Thermophile, Sulfur oxidizer, Heterotroph, Rod-shaped, Motile, Facultative Biotechnological None Aquatic, Hot spring Terrestrial hot spring in the Azores USA Public Gi00634 001581_GCAT 204536 12529 1640 Portland State Univ, TIGR NSF Reysenbach AL reysenbacha@pdx.edu Bacteria Aquificae Aquificales Hydrogenothermaceae Sulfurihydrogenibium Sulfurihydrogenibium sp. YO3AOP1 BACTERIAL Sulfurihydrogenibium sp. YO3AOP1 Genome AQUIFICAE incomplete Thermophile, Sulfur oxidizer, Heterotroph, Rod-shaped, Motile, Facultative Biotechnological None Aquatic, Hot spring USA Public Gi01984 002611_GCAT 436114 18889 Joint Genome Institute Richardson P microbes@cuba.jgi-psf.org Bacteria Aquificae Aquificales Hydrogenothermaceae Sulfurihydrogenibium Sulfurihydrogenibium yellowstonense BACTERIAL Sulfurihydrogenibium yellowstonense SS-5 Genome AQUIFICAE incomplete Thermophile, Sulfur oxidizer, Heterotroph, Rod-shaped, Motile, Facultative Biotechnological None Aquatic, Hot spring 70 Calcite Hot Springs in Yellowstone National Park USA Public Gi01958 002584_GCAT 432331 19071 Portland State Univ, TIGR NSF Reysenbach AL reysenbacha@pdx.edu Bacteria Firmicutes Lactobacillales unclassified Symbiobacterium Symbiobacterium toebii BACTERIAL Symbiobacterium toebii Genome FIRMICUTES complete Thermophile, Symbiont, Nonmotile, Nonsporulating, Microaerophilic, Heterotroph, Rod-shaped Biotechnological None 60 Hay compost in Korea Korea Public Gi00636 001583_GCAT 120580 15726 3474 3942 KRIBB, Dragon Genomics MOST Moon-Hee S smoonhee@kribb.re.kr Bacteria Cyanobacteria Chroococcales unclassified Synechococcus Synechococcus sp. PCC 7002 BACTERIAL Synechococcus sp. PCC 7002 Genome CYANOBACTERIA incomplete Photosynthetic, Ocean carbon cycle, Motile, Photoautotroph Biotechnological None Marine, Mud 1961 from a mud sample that came from the fish pens from Magueyes Island in Puerto Rico China Public Gi00640 001584_GCAT 32049 186 3200 NCBI, PSU Beijing Univ, Penn State Univ Zhao J jzhao@pku.edu.cn Bacteria Cyanobacteria Chroococcales unclassified Synechococcus Synechococcus sp. WH 7805 BACTERIAL Synechococcus sp WH7805 ABI Genome CYANOBACTERIA Draft incomplete Photoautotroph Environmental, MMI None Marine USA 57.6 Public Gi00890 001587_GCAT 59931 13553 638341215 2607 2883 NZ_AAOK00000000 NCBI, JCVI J Craig Venter Institute, Univ of Warwick Moore Foundation Scanlan DJ http://www.bio.warwick.ac.uk/res/frame.asp?ID=60 Bacteria Cyanobacteria Chroococcales unclassified Synechococcus Synechococcus sp. WH 5701 BACTERIAL Synechococcus sp WH5701 ABI Genome CYANOBACTERIA Draft incomplete Photoautotroph Environmental, MMI None Marine Long Island Sound USA 65.4 Public Gi00891 001588_GCAT 69042 13554 638341214 3006 3346 NZ_AANO00000000 NCBI, JCVI J Craig Venter Institute, Univ of Warwick Moore Foundation Scanlan DJ http://www.bio.warwick.ac.uk/res/frame.asp?ID=60 Bacteria Cyanobacteria Chroococcales unclassified Synechococcus Synechococcus sp. RS9917 BACTERIAL Synechococcus sp RS9917 (= RCC556) ABI Genome CYANOBACTERIA Draft incomplete Mesophile, Photoautotroph Environmental, MMI None Aquatic, Marine Eliat in the Red Sea at a depth of 10m USA 64.5 Public Gi00892 001589_GCAT 221360 13555 638341213 2538 2770 NZ_AANP00000000 NCBI, JCVI J Craig Venter Institute, Univ of Warwick Moore Foundation Scanlan DJ http://www.bio.warwick.ac.uk/res/frame.asp?ID=60 Bacteria Cyanobacteria Chroococcales unclassified Synechococcus Synechococcus sp. RS9916 BACTERIAL Synechococcus sp RS9916 (= RCC555) ABI Genome CYANOBACTERIA Draft incomplete Mesophile, Photoautotroph Environmental, MMI None Marine, Red Sea Eliat Red Sea at a depth of 10 meters USA 59.8 Public Gi00893 001590_GCAT 221359 13557 639857007 2661 2961 NZ_AAUA00000000 NCBI, JCVI J Craig Venter Institute, Univ of Warwick Moore Foundation Scanlan DJ http://www.bio.warwick.ac.uk/res/frame.asp?ID=60 Bacteria Cyanobacteria Chroococcales unclassified Synechococcus Synechococcus sp. MIT S9220 BACTERIAL Synechococcus sp MITS9220 Genome CYANOBACTERIA incomplete Photoautotroph Environmental, MMI None Marine Tropical Atlantic at a depth of 105m USA Public Gi00894 001591_GCAT 166309 19375 2500 JCVI J Craig Venter Institute, Univ of Warwick Moore Foundation Scanlan DJ http://www.bio.warwick.ac.uk/res/frame.asp?ID=60 Bacteria Cyanobacteria Chroococcales unclassified Synechococcus Synechococcus sp. BL107 BACTERIAL Synechococcus sp BL107 ABI Genome CYANOBACTERIA Draft incomplete Mesophile, Photoautotroph Environmental, MMI None Marine Blanes Bay in the Mediterranean Sea at a depth of 100m USA 55 Public Gi00895 001592_GCAT 313625 13559 639857006 2283 2507 NZ_AATZ00000000 NCBI, JCVI J Craig Venter Institute, Univ of Warwick Moore Foundation Scanlan DJ http://www.bio.warwick.ac.uk/res/frame.asp?ID=60 Bacteria Proteobacteria Syntrophobacterales Syntrophaceae Syntrophus Syntrophus aciditrophicus BACTERIAL Syntrophus aciditrophicus Genome PROTEOBACTERIA-DELTA incomplete Anaerobe, Syntrophic Biotechnological None USA Public Gi00644 001594_GCAT 316277 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Syntrophomonadaceae Syntrophomonas Syntrophomonas zehnderi BACTERIAL Syntrophomonas zehnderi OL-4 DSM 17840, JCM 13948 Methanobacterium formicicum Genome FIRMICUTES incomplete Anaerobe, Syntrophic Biotechnological None Sludge bed reactor USA Public Gi01747 001595_GCAT 404335 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Peptococcaceae Pelotomaculum Pelotomaculum schinkii BACTERIAL Pelotomaculum schinkii HH ATCC BAA-615, DSM 15200 Methanospirillum hungatei Genome FIRMICUTES incomplete Anaerobe, Syntrophic, Propionate-oxidizing, Sporulating Biotechnological None Anaerobic sludge bed reactor USA Public Gi01748 001596_GCAT 78350 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Bacteroidetes Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter dokdonensis BACTERIAL Polaribacter (Tenacibaculum) dokdonensis MED152 ABI Genome BACTEROIDETES Draft incomplete Rod-shaped, Motile, Aerobe Environmental, MMI None Marine NW Mediterranean Sea from a sample taken at a depth of 1m USA 31 Public Gi00896 001597_GCAT 313598 13543 638341218 2956 2679 NZ_AANA00000000 NCBI, JCVI J Craig Venter Institute, Kalmar Univ Moore Foundation Pinhassi J http://halia.hik.se/start.jsp?page=members/jarone%20pinhassi Bacteria Proteobacteria Alteromonadales unclassified Teredinibacter Teredinibacter turnerae BACTERIAL Teredinibacter turnerae T7902 ATCC 39867, DSM 15152 Lyrodus pedicellatus Genome PROTEOBACTERIA-GAMMA incomplete Cellulolytic, Dinitrogen-fixing, Rod-shaped, Motile, Chemoheterotroph, Endosymbiont Biotechnological, Biofuels None Host Gill tissue of a wood-boring mollusc Lyrodus pedicellatus USA 50 Public Gi01476 001598_GCAT 377629 16649 Univ of Maine, TIGR NSF Distel DL http://www.umaine.edu/meem/faculty/distel.htm Bacteria Proteobacteria Rhodocyclales Rhodocyclaceae Thauera Thauera sp. MZ1T BACTERIAL Thauera sp. MZ1T Genome PROTEOBACTERIA-BETA incomplete Chemolithoautotroph, Carbon sequestration Environmental, Ecological, Biotechnological None Aquatic, Wastewater Wastewater treatment plant USA Public Gi01570 001599_GCAT 85643 20091 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Thermoanaerobacteriales Thermoanaerobacteriaceae Thermoanaerobacter Thermoanaerobacter ethanolicus BACTERIAL Thermoanaerobacter ethanolicus 39E ATCC 33223 Genome FIRMICUTES Draft incomplete Thermophile, Anaerobe, Rod-shaped, Motile Biotechnological None Aquatic, Hot spring Thermal springs in Yellowstone National Park USA 34.5 Public Gi00653 001600_GCAT 340099 13901 638341219 2282 2254 NZ_AAKQ00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Thermoanaerobacteriales Thermoanaerobacteriaceae Thermoanaerobacter Thermoanaerobacter ethanolicus BACTERIAL Thermoanaerobacter ethanolicus X514 ABI 11x Genome FIRMICUTES Draft incomplete Thermophile, Anaerobe, Rod-shaped, Motile Biotechnological None Aquatic 60 Deep subsurface location at the Piceance Basin, Colorado, USA USA 34 Public Gi01523 001601_GCAT 399726 16394 639857005 2275 2230 NZ_AATV00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Chromatiales Chromatiaceae Thermochromatium Thermochromatium tepidum BACTERIAL Thermochromatium tepidum MC ATCC 43061 Genome PROTEOBACTERIA-GAMMA incomplete Green sulfur, Nitrogen fixation, Photosynthetic Biotechnological None Aquatic, Hot spring Hot sulfur spring in Yellowstone National Park USA Proprietary Gi00655 001602_GCAT 316276 13652 3295 3375 Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Bacteria Thermodesulfobacteria Thermodesulfobacteriales Thermodesulfobacteriaceae Thermodesulfobacterium Thermodesulfobacterium commune BACTERIAL Thermodesulfobacterium commune DSM 2178 Genome THERMODESULFOBACTERIA complete Thermophile, Rod-shaped, Nonmotile, Anaerobe, Hyperthermophile Evolutionary None Aquatic 70 USA Public Gi00737 001603_GCAT 289377 12531 TIGR NSF Bacteria Nitrospirae Nitrospirales Nitrospiraceae Thermodesulfovibrio Thermodesulfovibrio yellowstonii BACTERIAL Thermodesulfovibrio yellowstonii DSM 11347 Genome NITROSPIRAE complete Thermophile, Sulfate reducer, Motile, Curved-shaped, Nonsporulating Evolutionary None 65 Thermal vent in Yellowstone Lake in Wyoming USA Public Gi00736 001604_GCAT 289376 12532 TIGR NSF Bacteria Firmicutes Thermolithobacterales Thermolithobacteraceae Thermolithobacter Thermolithobacter ferrireducens BACTERIAL Thermolithobacter (Ferribacter) ferrireducens (thermautotrophicus) JW/KA-2 ATCC 700985 Genome FIRMICUTES incomplete Anaerobe, Chemolithoautotroph, Iron reducer, Autotroph, Thermophile Biotechnological, Bioremediation None Soil 70 Yellowstone National Park on 1999 USA Public Gi01568 001605_GCAT 416555 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Chloroflexi Thermomicrobiales Thermomicrobiaceae Thermomicrobium Thermomicrobium roseum BACTERIAL Thermomicrobium roseum DSM 5159 Genome CHLOROFLEXI incomplete Thermophile, Nonmotile, Aerobe, Nonsporulating, Rod-shaped Evolutionary, Tree of Life None 70 Yellowstone National Park USA Public Gi00735 001606_GCAT 309801 12533 TIGR NSF Bacteria Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga neapolitana BACTERIAL Thermotoga neapolitana DSM 4359 ATCC 49045, DSM4359 Genome THERMOTOGAE incomplete Piezophile, Sulfur reducer, Rod-shaped, Hyperthermophile, Nonsporulating Biotechnological, Hydrogen production, Energy production None Aquatic 70-75 Black smoker in the bay near Naples Italy in 1986 USA Public Gi00657 001607_GCAT 309803 12534 1800 TIGR DOE Bacteria Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga neapolitana BACTERIAL Thermotoga neapolitana DSM 4359 ATCC 49045, DSM4359 Genome THERMOTOGAE incomplete incomplete Piezophile, Sulfur reducer, Rod-shaped, Hyperthermophile, Nonsporulating Biotechnological, Hydrogen production, Energy production None Aquatic 70-75 Black smoker in the bay near Naples Italy in 1986 Korea Proprietary Gi02531 003257_GCAT 309803 21023 Genotech Corp. Bacteria Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga sp. RQ2 BACTERIAL Thermotoga sp. RQ2 Genome THERMOTOGAE incomplete Rod-shaped, Thermophile, Hyperthermophile, Anaerobe, Motile, Nonsporulating Evolutionary, Biotechnological None Aquatic 76 - 82 Geothermally heated seafloor in the Azores USA Public Gi01985 002612_GCAT 126740 19543 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga naphthophila BACTERIAL Thermotoga naphthophila RKU-10 DSM 13996, JCM 10882 Genome THERMOTOGAE incomplete Rod-shaped, Thermophile, Hyperthermophile, Anaerobe, Motile, Nonsporulating, Heterotroph Evolutionary, Biotechnological None Aquatic 80 Production fluid of the Kubiki oil reservoir in Niigata Japan USA 46.1 Public Gi02015 002644_GCAT 93930 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Bacteroidetes Flavobacteriales Cryomorphaceae Sediminitomix Sediminitomix flava BACTERIAL Flavobacteria sp. MS024-2A Genome BACTEROIDETES incomplete Rod-shaped, Motile, Aerobe, Heterotroph Environmental None Aquatic USA Public Gi02016 002645_GCAT 117743 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Bacteroidetes Flavobacteriales Cryomorphaceae Sediminitomix Sediminitomix flava BACTERIAL Flavobacteria sp. MS0243-3C Genome BACTEROIDETES incomplete Rod-shaped, Motile, Aerobe, Heterotroph Environmental None Aquatic USA Public Gi02017 002646_GCAT 117743 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Bacteroidetes Flavobacteriales Cryomorphaceae Sediminitomix Sediminitomix flava BACTERIAL Flavobacteria sp. (pending) Genome BACTEROIDETES incomplete Rod-shaped, Motile, Aerobe, Heterotroph Environmental None Aquatic USA Public Gi02018 002647_GCAT 117743 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Bacteroidetes Flavobacteriales Cryomorphaceae Sediminitomix Sediminitomix flava BACTERIAL Flavobacteria sp. (pending) Genome BACTEROIDETES incomplete Rod-shaped, Motile, Aerobe, Heterotroph Environmental None Aquatic USA Public Gi02019 002648_GCAT 117743 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Bacteroidetes Flavobacteriales Cryomorphaceae Sediminitomix Sediminitomix flava BACTERIAL Flavobacteria sp. (pending) Genome BACTEROIDETES incomplete Rod-shaped, Motile, Aerobe, Heterotroph Environmental None Aquatic USA Public Gi02020 002649_GCAT 117743 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus buchneri BACTERIAL Lactobacillus buchneri B-30929 Genome FIRMICUTES incomplete Facultative, Probiotic, Rod-shaped Food industry, Biotechnological None Host, Intestinal microflora USA Public Gi02021 002650_GCAT 1581 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus buchneri BACTERIAL Lactobacillus buchneri NRRL B30929 Genome FIRMICUTES incomplete Facultative, Probiotic, Rod-shaped Food industry, Biotechnological None Host, Intestinal microflora USA Public Gi02022 002651_GCAT 1581 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Bacillales Paenibacillaceae Paenibacillus Paenibacillus sp. JDR-2 BACTERIAL Paenibacillus sp. JDR-2 Genome FIRMICUTES incomplete Sporulating, Rod-shaped, Methylglucuronoxylan utilization, Aerobe, Mesophile Biotechnological, Biofuels, Ethanol production None Wood, Host 30 Sweet gum stem wood buried in surface soil USA Public Gi02023 002652_GCAT 324057 20399 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Thermotogae Thermotogales Thermotogaceae Thermosipho Thermosipho africanus BACTERIAL Thermosipho africanus TBA5 Genome THERMOTOGAE incomplete Rod-shaped, Thermophile, Anaerobe Evolutionary, Biotechnological None Aquatic USA 30 Public Gi01046 001611_GCAT 2421 Genome Canada Doolittle WF ford@dal.ca Bacteria Deinococcus-Thermus Thermales Thermaceae Thermus Thermus thermophilus BACTERIAL Thermus thermophilus (flavus) Genome THERMI incomplete Thermophile, Aerobe, Nonmotile Biotechnological None 85 Thermal vent in Japan USA Proprietary Gi00658 001612_GCAT 274 Thermogene Bacteria Proteobacteria Chromatiales Ectothiorhodospiraceae Thioalkalivibrio uncultured Thioalkalivibrio sp. BACTERIAL Thioalkalivibrio sp HL-EbGR7 Genome PROTEOBACTERIA-GAMMA incomplete Sulfur oxidizer, Chemolithoautotroph, Facultative, Alkalophile Biotechnological, Environmental None Sulfide-oxidizing bioreactor USA Public Gi01555 001613_GCAT 106633 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Chromatiales Ectothiorhodospiraceae Thioalkalivibrio uncultured Thioalkalivibrio sp. BACTERIAL Thioalkalivibrio sp K90mix1 Genome PROTEOBACTERIA-GAMMA incomplete Sulfur oxidizer, Chemolithoautotroph, Facultative, Alkalophile, Halotolerant Biotechnological, Environmental None Soda lake sediment USA Public Gi01556 001614_GCAT 106633 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales unclassified Thiomonas Thiomonas sp. RAN4 BACTERIAL Thiomonas sp. Genome PROTEOBACTERIA-BETA incomplete Detoxification, Arsenic metabolizer Biotechnological None France Public Gi00788 001615_GCAT 32012 5000 Genoscope Genoscope Barbe V vbarbe@genoscope.cns.fr Bacteria Spirochaetes Spirochaetales Spirochaetaceae Treponema Treponema primitia BACTERIAL Treponema primitia ZAS1 Zootermopsis angusticollis Genome SPIROCHAETES incomplete Acetogen, Dinitrogen-fixing, Hydrogen metabolizer, Symbiont Biotechnological, Energy production None Host, Termite gut USA 60 Public Gi01248 001616_GCAT 88058 CalTech, TIGR NSF Leadbetter J http://www.its.caltech.edu/~jaredl/ Bacteria Spirochaetes Spirochaetales Spirochaetaceae Treponema Treponema azotonutricium BACTERIAL Treponema azotonutricium ZAS9 Zootermopsis angusticollis Genome SPIROCHAETES incomplete Acetogen, Dinitrogen-fixing, H2 Metabolizing, Symbiont Biotechnological, Energy production None Host, Termite gut USA 60 Public Gi01249 001617_GCAT 150829 CalTech, TIGR NSF Leadbetter J http://www.its.caltech.edu/~jaredl/ Bacteria Cyanobacteria Oscillatoriales unclassified Trichodesmium Trichodesmium thiebautii BACTERIAL Trichodesmium thiebautii II-3 Genome CYANOBACTERIA incomplete Diazotroph Environmental, MMI None Marine, Surface water Western subtropical Atlantic surface waters near Bermuda in 1999 USA Public Gi00897 001618_GCAT 306282 13552 8000 JCVI J Craig Venter Institute, Woods Hole Oceanographic Institute Moore Foundation Waterbury JB http://www.whoi.edu/scitech/staff.jsp?id=4 Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus selenitireducens BACTERIAL Bacillus selenitireducens MLMS-1 Genome FIRMICUTES incomplete incomplete Arsenic metabolizer, Carbon dioxide fixation Biotechnological, Environmental, Bioremediation None Mud Alkaline hypersaline arsenic-rich mud from Mono Lake California USA Public Gi00970 001619_GCAT 85683 3000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Bacteroidetes unclassified unclassified unclassified Flavobacteria bacterium BBFL7 BACTERIAL Flavobacteria sp BBFL7 ABI Genome BACTEROIDETES Draft incomplete Rod-shaped, Motile, Aerobe, Heterotroph Environmental, MMI None Marine USA 35 Public Gi00898 001620_GCAT 156586 13604 638341093 3083 2592 NZ_AAPD00000000 NCBI, JCVI J Craig Venter Institute, Scripps Institute of Oceanography Moore Foundation Azam http://siodev.ucsd.edu/rab/act_detail.cfm?state=%25%29%3EK%2DTLL%20%0A Bacteria Proteobacteria Rhodobacterales unclassified unclassified Rhodobacterales bacterium HTCC2654 BACTERIAL Rhodobacterales sp HTCC2654 ABI HTCC2654 Genome PROTEOBACTERIA-ALPHA Draft incomplete Environmental, MMI None Marine Sargasso Sea at the BATS station at a depth of 10m USA 65 Public Gi00899 001621_GCAT 314271 13614 638341172 4529 4712 NZ_AAMT00000000 NCBI, Oregon State Univ, JCVI J Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm Bacteria Proteobacteria Rhodobacterales unclassified unclassified Rhodobacterales bacterium HTCC2177 BACTERIAL Rhodobacterales sp HTCC2177 HTCC2177 Genome PROTEOBACTERIA-ALPHA incomplete Environmental, MMI None Marine, Coastal Coastal region near Newport Oregon at a depth of 10m USA Public Gi00900 001622_GCAT 314258 13613 Oregon State Univ, JCVI J Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm Bacteria Proteobacteria Rhodobacterales unclassified unclassified Rhodobacterales bacterium HTCC2083 BACTERIAL Rhodobacterales sp HTCC2083 HTCC2083 Genome PROTEOBACTERIA-ALPHA incomplete Environmental, MMI None Marine, Coastal Coastal region near Newport Oregon at a depth of 10m USA Public Gi00901 001623_GCAT 314270 13508 5000 Oregon State Univ, JCVI J Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm Bacteria Proteobacteria unclassified unclassified unclassified gamma proteobacterium HTCC2207 BACTERIAL Marine gamma proteobacterium sp HTCC2207 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Aerobe, Heterotroph Environmental, MMI None Marine, Coastal Coastal area near Newport Oregon at a depth of 10m USA 49.4 Public Gi00902 001624_GCAT 314287 16658 638341247 2620 2388 NZ_AAPI00000000 NCBI, Oregon State Univ, JCVI J Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm Bacteria Proteobacteria unclassified unclassified unclassified marine gamma proteobacterium HTCC2143 BACTERIAL Marine gamma proteobacterium sp HTCC2143 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Environmental, MMI None Marine, Coastal Coastal pacific ocean near Newport Oregon at a depth of 10m USA 47 Public Gi00903 001625_GCAT 247633 13605 639857034 3925 3662 NZ_AAVT00000000 NCBI, Oregon State Univ, JCVI J Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm Bacteria Bacteroidetes Flavobacteriales unclassified unclassified Flavobacteriales bacterium HTCC2170 BACTERIAL Flavobacteriales sp HTCC2170 ABI HTCC2170 Genome BACTEROIDETES Draft incomplete Rod-shaped, Motile, Aerobe, Heterotroph Environmental, MMI None Aquatic, Marine, Coastal Coastal area of Newport Oregon at a depth of 10m USA 37 Public Gi00904 001626_GCAT 313603 13595 638341094 3873 3498 NZ_AAOC00000000 NCBI, Oregon State Univ, JCVI J Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm Bacteria Proteobacteria unclassified unclassified unclassified beta proteobacterium KB13 BACTERIAL beta proteobacterium sp KB13 Genome PROTEOBACTERIA-BETA incomplete Environmental, MMI None Surface water, Marine Surface waters of Kaneohe Bay, Hawaii USA Public Gi00904 001627_GCAT 314607 13602 638341094 5000 JCVI J Craig Venter Institute, Univ of Hawaii Moore Foundation Rappe MS http://www.soest.hawaii.edu/oceanography/faculty_html/rappe.html Bacteria Proteobacteria unclassified unclassified Congregibacter Congregibacter litoralis BACTERIAL Congregibacter litoralis KT71 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Heterotroph Environmental, MMI None Marine, Surface water Surface waters of the North Sea near Helgoland Germany USA 58 Public Gi00905 000025_GCAT 314285 13585 638341070 4328 3941 NZ_AAOA00000000 NCBI, JCVI J Craig Venter Institute, Max Planck Institute Moore Foundation Amann R http://www.mpi-bremen.de/en/Department_of_Molecular_Ecology.html Bacteria Proteobacteria unclassified unclassified Mariprofundus Mariprofundus ferrooxydans BACTERIAL Siderooxidans (Mariprofundus) marinum (ferrooxydans) PV-1 ABI Genome PROTEOBACTERIA Draft incomplete Iron oxidizer Environmental, MMI None Marine Loihi Seamount Hawaii at a depth of 1100 meters USA 54 Public Gi00906 001629_GCAT 314345 13615 639857004 2869 2873 NZ_AATS00000000 NCBI, JCVI J Craig Venter Institute, Woods Hole Oceanographic Institute Moore Foundation Edwards KJ http://www.whoi.edu/science/MCG/edwards/ Bacteria Proteobacteria Xanthomonadales Xanthomonadaceae Siderooxidans Siderooxidans lithoautotrophicus BACTERIAL Siderooxidans (Sideroxydans) lithoautotrophicus (lithotrophicus) ES-1 Genome PROTEOBACTERIA-GAMMA incomplete Aerobe, Iron oxidizer, Chemolithoautotroph Biotechnological, Bioremediation, Environmental None Soil USA Public Gi01558 001630_GCAT 63745 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Aurantimonadaceae Aurantimonas Aurantimonas sp. SI85-9A1 BACTERIAL Aurantimonas sp SI85-9A1 ABI Genome PROTEOBACTERIA-ALPHA Draft incomplete Pathogen, Aerobe, Halophile, Rod-shaped, Chemoheterotroph Environmental, Coral Pathogen, MMI None Marine Saanich Inlet a seasonally anoxic fjord in British Columbia in Canada USA 66.7 Public Gi00907 001632_GCAT 314269 13607 638341009 4325 3650 NZ_AAPJ00000000 NCBI, JCVI J Craig Venter Institute, Scripps Institute of Oceanography Moore Foundation Tebo BM http://mbrdbeta.ucsd.edu/labpages/tebo_lab.cfm Bacteria Lentisphaerae unclassified Victivallaceae Victivallis Victivallis vadensis BACTERIAL Victivallis vadensis DSM 14823 ATCC BAA-548 Genome LENTISPHAERAE Draft incomplete Anaerobe, Cellobiose-degrading, Coccus-shaped, Nonmotile Evolutionary, Medical, Biotechnological None Host, Intestinal microflora 37 Human feces USA 59.2 Public Gi01047 001633_GCAT 340101 15583 640963013 4577 3541 NZ_ABDE00000000 NCBI Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rickettsiales Rickettsiaceae Wolbachia Wolbachia endosymbiont of Culex pipiens quinquefasciatus BACTERIAL Wolbachia pipientis (Culex quinquefasciatus) Culex quinquefasciatus Genome PROTEOBACTERIA-ALPHA incomplete Insect endosymbiont, Aerobe, Coccus-shaped Biotechnological None Host Ovarian tissue of a wild-caught Culex quinquefasciatus mosquito International Public Gi00680 001634_GCAT 368810 12626 1500 Sanger Institute Sanger Institute, Univ of Queensland, Liverpool School of Tropical Medicine Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Proteobacteria Rickettsiales Rickettsiaceae Wolbachia Wolbachia sp. wNo BACTERIAL Wolbachia sp. wNo Drosophila simulans Genome PROTEOBACTERIA-ALPHA incomplete Insect endosymbiont, Endosymbiont, Aerobe Biotechnological None Host European Consortium Public Gi00686 001635_GCAT 66080 638341233 1500 Univ of Uppsala, IMBB-FORTH Univ of Uppsala, Univ of Kopenhagen, IMBB-FORTH European Union Bourtzis K bourtzis@imbb.forth.gr Bacteria Proteobacteria Rickettsiales Rickettsiaceae Wolbachia Wolbachia sp. wUni BACTERIAL Wolbachia sp. wUni Muscidifurax uniraptor Genome PROTEOBACTERIA-ALPHA incomplete Insect endosymbiont, Aerobe Biotechnological None Host European Consortium Public Gi00687 001636_GCAT 66086 1500 Univ of Uppsala, IMBB-FORTH Univ of Uppsala, Univ of Kopenhagen, IMBB-FORTH European Union Bourtzis K bourtzis@imbb.forth.gr Bacteria Proteobacteria Rickettsiales Rickettsiaceae Wolbachia Wolbachia sp. wVul BACTERIAL Wolbachia sp. wVul Armadillidium vulgare Genome PROTEOBACTERIA-ALPHA incomplete Insect endosymbiont, Aerobe Biotechnological None Host European Consortium Public Gi00688 001637_GCAT 77824 1500 Univ of Uppsala, IMBB-FORTH Univ of Uppsala, Univ of Kopenhagen, IMBB-FORTH European Union Bourtzis K bourtzis@imbb.forth.gr Bacteria Proteobacteria Rickettsiales Rickettsiaceae Wolbachia Wolbachia endosymbiont of Dirofilaria immitis BACTERIAL Wolbachia sp. (Dirofilaria immitis) Dirofilaria immitis Genome PROTEOBACTERIA-ALPHA incomplete Insect endosymbiont, Aerobe Biotechnological None Host European Consortium Public Gi00684 001638_GCAT 82301 Univ of Milano, Univ of Uppsala, Univ of Kopenhagen, IMBB-FORTH Bandi C http://www.unimi.it/chiedove/persona.idc?matricola=13975 Bacteria Proteobacteria Rickettsiales Rickettsiaceae Wolbachia Wolbachia endosymbiont of Brugia malayi BACTERIAL Wolbachia sp (Brugia malayi) Brugia malayi Genome PROTEOBACTERIA-ALPHA incomplete Insect endosymbiont, Aerobe, Coccus-shaped Biotechnological None Host USA Public Gi00682 001639_GCAT 80849 12515 TIGR Bacteria Proteobacteria Rickettsiales Rickettsiaceae Wolbachia Wolbachia endosymbiont of Drosophila willistoni BACTERIAL Wolbachia sp (Drosophila willistoni TSC#14030-0811.24) Drosophila willistoni Genome PROTEOBACTERIA-ALPHA Draft incomplete Insect endosymbiont, Aerobe, Rod-shaped Biotechnological None Host USA 35 Public Gi01546 001640_GCAT 384035 16739 638341234 862 964 NZ_AAQP00000000 NCBI J Craig Venter Institute Bacteria Proteobacteria Rickettsiales Rickettsiaceae Wolbachia Wolbachia endosymbiont of Drosophila ananassae BACTERIAL Wolbachia sp (Drosophila ananassae) ABI Drosophila ananassae Genome PROTEOBACTERIA-ALPHA Draft incomplete Endosymbiont, Aerobe Biotechnological None Host USA 35 Public Gi01234 001641_GCAT 307502 13365 638341232 1440 1802 NZ_AAGB00000000 NCBI TIGR Bacteria Proteobacteria Rickettsiales Rickettsiaceae Wolbachia Wolbachia endosymbiont of Drosophila simulans BACTERIAL Wolbachia sp Drosophila simulans ABI Drosophila simulans Genome PROTEOBACTERIA-ALPHA Draft incomplete Endosymbiont, Aerobe Biotechnological None Host USA 35 Public Gi01235 001642_GCAT 77038 13364 638341233 1063 760 NZ_AAGC00000000 NCBI TIGR Bacteria Proteobacteria Rickettsiales Rickettsiaceae Wolbachia Wolbachia endosymbiont of Onchocerca volvulus BACTERIAL Wolbachia sp. (Onchocerca volvulus) Onchocerca volvulus Genome PROTEOBACTERIA-ALPHA incomplete Endosymbiont, Aerobe Biotechnological None Host International Public Gi00685 001643_GCAT 77551 12625 1100 Sanger Institute Sanger Institute, Univ of Edinburgh, Liverpool School of Tropical Medicine, New England Biolabs Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Bacteria Verrucomicrobia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium spinosum BACTERIAL Verrucomicrobium spinosum DSM 4136 Genome VERRUCOMICROBIA incomplete Heterotroph, Rod-shaped, Facultative Evolutionary, Environmental, Biotechnological None Soil from the Tama graveyard Tokyo in 1966 USA 58 Public Gi00677 001644_GCAT 240016 10620 8300 TIGR NSF Ward NL nward@tigr.org Bacteria Verrucomicrobia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium sp. Esz21t BACTERIAL Verrucomicrobium sp 2D6 Genome VERRUCOMICROBIA incomplete Evolutionary, Environmental, Biotechnological None Soil USA 60 Public Gi01048 001645_GCAT 2735 4000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Western X phytoplasma BACTERIAL Phytoplasma Western X disease Genome FIRMICUTES incomplete Pathogen, Aerobe, Obligate parasite Agricultural, Plant Pathogen Western X-disease USA Public Gi00456 001646_GCAT 37704 670 Univ of California, Davis Kirkpatrick BC bckirkpatrick@ucdavis.edu Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio alginolyticus BACTERIAL Vibrio alginolyticus 12G01 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Motile, Facultative, Curved-shaped Environmental, Medical, Human Pathogen, MMI Bacteremia, Soft tissue infection Surface water, Marine Surface waters from Plum Island Ecosystem-LTER USA USA 45 Public Gi00908 001647_GCAT 314288 13571 638341222 5152 4732 NZ_AAPS00000000 NCBI, JCVI J Craig Venter Institute, MIT Moore Foundation Polz M http://cee.mit.edu/index.pl?id=2366&isa=Category&op=show_printer_friendly Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio angustum BACTERIAL Vibrio angustum S14 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Copiotroph, Motile, Rod-shaped, Anaerobe Environmental, MMI None Surface water, Marine Botany Bay near Sydney Australia from surface waters USA 40 Public Gi00909 001648_GCAT 314292 13567 638341223 5082 4558 NZ_AAOJ00000000 NCBI, JCVI J Craig Venter Institute, Univ of New South Wales Moore Foundation Cavicchioli R http://www.babs.unsw.edu.au/research/ehm/lab_cavicchioli.html Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio campbellii BACTERIAL Vibrio campbellii AND4 Genome PROTEOBACTERIA-GAMMA incomplete Halophile Environmental, MMI None Marine Andaman Sea near Thailand at a depth of 2-5 m USA 45 Public Gi00910 001649_GCAT 314289 13564 54254 3935 JCVI J Craig Venter Institute, Univ of Kalmar Moore Foundation Hagstrom A http://halia.hik.se/start.jsp?page=members/ake%20hagstrom Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma parvum BACTERIAL Ureaplasma parvum serovar 1 1 ABI Genome FIRMICUTES Draft incomplete Pathogen, Nonmotile, Facultative, Sphere-shaped Medical, Human Pathogen Urinary tract infection, Respiratory infection Host USA Public Gi01764 001650_GCAT 95656 20245 750 NZ_ABES00000000 JCVI TIGR NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma parvum BACTERIAL Ureaplasma parvum serovar 3 3 Genome FIRMICUTES Draft incomplete Pathogen, Nonmotile, Facultative, Sphere-shaped Medical, Human Pathogen Urinary tract infection, Respiratory infection Host USA 25.9 Public Gi01765 001651_GCAT 38504 19087 770 NZ_AAYM00000000 NCBI, JCVI TIGR NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma parvum BACTERIAL Ureaplasma parvum serovar 6 6 Genome FIRMICUTES Draft incomplete Pathogen, Nonmotile, Facultative, Sphere-shaped Medical, Human Pathogen Urinary tract infection, Respiratory infection Host USA 25.8 Public Gi01766 001652_GCAT 95660 19413 770 NZ_AAZQ00000000 JCVI TIGR NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma urealyticum BACTERIAL Ureaplasma urealyticum 23, serovar 2 2 ATCC 27814 Genome FIRMICUTES incomplete Pathogen, Nonmotile, Facultative, Sphere-shaped, Mesophile Medical, Human Pathogen Non-specific urethritis (NSU), Infertility, Chorioamnioitis Host, Urogenital tract 37 Ppatient with nongonococcal urethritis USA Public Gi01767 001653_GCAT 95657 20687 JCVI TIGR NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma urealyticum BACTERIAL Ureaplasma urealyticum 354, serovar 5 5 Genome FIRMICUTES Draft incomplete Pathogen, Nonmotile, Facultative, Sphere-shaped, Mesophile Medical, Human Pathogen Non-specific urethritis (NSU), Infertility, Chorioamnioitis Host, Urogenital tract USA 26 Public Gi01768 001654_GCAT 95659 19415 880 NZ_AAZR00000000 JCVI TIGR NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma urealyticum BACTERIAL Ureaplasma urealyticum 58, serovar 4 4 Genome FIRMICUTES Draft incomplete Pathogen, Nonmotile, Facultative, Sphere-shaped, Mesophile Medical, Human Pathogen Non-specific urethritis (NSU), Infertility, Chorioamnioitis Host, Urogenital tract USA 26 Public Gi01769 001655_GCAT 95658 19091 850 NZ_AAYO00000000 NCBI, JCVI TIGR NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma urealyticum BACTERIAL Ureaplasma urealyticum Co, serovar 7 7 Genome FIRMICUTES Draft incomplete Pathogen, Nonmotile, Facultative, Sphere-shaped, Mesophile Medical, Human Pathogen Non-specific urethritis (NSU), Infertility, Chorioamnioitis Host, Urogenital tract USA 26.2 Public Gi01770 001656_GCAT 95661 19093 900 NZ_AAYP00000000 NCBI, JCVI TIGR NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma urealyticum BACTERIAL Ureaplasma urealyticum K2, serovar 11 11 Genome FIRMICUTES Draft incomplete Pathogen, Nonmotile, Facultative, Sphere-shaped, Mesophile Medical, Human Pathogen Non-specific urethritis (NSU), Infertility, Chorioamnioitis Host, Urogenital tract 37 USA 26.1 Public Gi01771 001657_GCAT 95665 19417 890 NZ_AAZS00000000 JCVI TIGR NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma urealyticum BACTERIAL Ureaplasma urealyticum T-strain 960, serovar 8 8 Genome FIRMICUTES Draft incomplete Pathogen, Nonmotile, Facultative, Sphere-shaped, Mesophile Medical, Human Pathogen Non-specific urethritis (NSU), Infertility, Chorioamnioitis Host, Urogenital tract 37 USA 26.3 Public Gi01772 001658_GCAT 95662 19089 980 NZ_AAYN00000000 NCBI, JCVI TIGR NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma urealyticum BACTERIAL Ureaplasma urealyticum U24, serovar 12 12 Genome FIRMICUTES Draft incomplete Pathogen, Nonmotile, Facultative, Sphere-shaped, Mesophile Medical, Human Pathogen Non-specific urethritis (NSU), Infertility, Chorioamnioitis Host, Urogenital tract 37 USA 25.9 Public Gi01773 001659_GCAT 95666 19419 840 NZ_AAZT00000000 JCVI TIGR NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma urealyticum BACTERIAL Ureaplasma urealyticum U38, serovar 13 13 ATTC 33698 Genome FIRMICUTES Draft incomplete Pathogen, Nonmotile, Facultative, Sphere-shaped, Mesophile Medical, Human Pathogen Non-specific urethritis (NSU), Infertility, Chorioamnioitis Host, Urogenital tract 37 Pregnant woman USA 25 Public Gi01774 001660_GCAT 95667 20405 846 NZ_ABEV00000000 NCBI, JCVI TIGR NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma urealyticum BACTERIAL Ureaplasma urealyticum Vancouver, serovar 9 9 Genome FIRMICUTES Draft incomplete Pathogen, Nonmotile, Facultative, Sphere-shaped Medical, Human Pathogen Non-specific urethritis (NSU), Infertility, Chorioamnioitis Host, Urogenital tract USA 26.3 Public Gi01775 001661_GCAT 95663 19095 970 NZ_AAYQ00000000 NCBI, JCVI TIGR NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma urealyticum BACTERIAL Ureaplasma urealyticum Western, serovar 10 10 Genome FIRMICUTES Draft incomplete Pathogen, Nonmotile, Facultative, Sphere-shaped Medical, Human Pathogen Non-specific urethritis (NSU), Infertility, Chorioamnioitis Host, Urogenital tract USA Public Gi01776 001662_GCAT 95664 20247 890 NZ_ABET00000000 JCVI TIGR NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml Bacteria Firmicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma parvum BACTERIAL Ureaplasma parvum U26, serovar 14 14 ABI Genome FIRMICUTES Draft incomplete Pathogen, Nonmotile, Facultative, Sphere-shaped Medical, Human Pathogen Urinary tract infection, Respiratory infection Host USA Public Gi01881 001663_GCAT 95668 20185 750 NZ_ABER00000000 JCVI TIGR NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae 1587 Genome PROTEOBACTERIA-GAMMA Draft incomplete Curved-shaped, Motile, Facultative, Nonsporulating Medical, Human Pathogen Cholera, Food poisoning Aquatic USA 47.5 Public Gi01637 001670_GCAT 412966 18265 640963020 4140 3758 NZ_AAUR00000000 NCBI TIGR NIH-NIAID Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae 2740-80 Genome PROTEOBACTERIA-GAMMA Draft incomplete Curved-shaped, Motile, Facultative, Non-Pathogen Medical None Aquatic Nontoxigenic environmental isolate from the Gulf Coast USA 47 Public Gi01638 001671_GCAT 412614 18253 640196212 3945 3771 NZ_AAUT00000000 NCBI TIGR NIH-NIAID Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae AM-19226 O39 Genome PROTEOBACTERIA-GAMMA Draft incomplete Curved-shaped, Motile, Facultative Medical, Human Pathogen Cholera, Food poisoning Aquatic Bangladesh patient USA 47.7 Public Gi01639 001672_GCAT 404974 17723 4056 NZ_AATY00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae MAK757 Genome PROTEOBACTERIA-GAMMA Draft incomplete Curved-shaped, Motile, Facultative Medical, Human Pathogen Cholera, Food poisoning Aquatic Mildly toxigenic strain of the El Tor biotype, serotype Ogawa USA 47.6 Public Gi01640 001673_GCAT 412967 18263 640963019 3920 3501 NZ_AAUS00000000 NCBI TIGR NIH-NIAID Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae MZO-3 Genome PROTEOBACTERIA-GAMMA Draft incomplete Curved-shaped, Motile, Facultative Medical, Human Pathogen Cholera, Food poisoning Aquatic Clinical isolated from Bangladesh USA 47.6 Public Gi01641 001674_GCAT 412883 18261 640963021 4150 NZ_AAUU00000000 NCBI TIGR NIH-NIAID Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio harveyi BACTERIAL Vibrio harveyi HY01 Genome PROTEOBACTERIA-GAMMA Draft incomplete Curved-shaped, Motile, Facultative, Rod-shaped Marine Pathogen Vibriosis Aquatic, Marine USA 45.6 Public Gi01642 001675_GCAT 410291 17467 640963010 5400 4327 NZ_AAWP00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. Ex25 BACTERIAL Vibrio sp. Ex25 062 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Curved-shaped, Motile, Facultative, Rod-shaped, Nonsporulating Biotechnological None Aquatic, Hydrothermal vent, Marine Deep-sea hydrothermal vent USA 44 Public Gi01643 001676_GCAT 150340 15693 638341229 4838 4425 NZ_AAKK00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae MO10 O139 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Curved-shaped, Motile, Facultative Medical, Human Pathogen Cholera, Food poisoning Aquatic Early isolate of O139 emergence USA Public Gi01150 001677_GCAT 345072 15666 638341224 4024 3441 NZ_AAKF00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae 623-39 Genome PROTEOBACTERIA-GAMMA Draft incomplete Curved-shaped, Motile, Facultative Medical, Human Pathogen Cholera, Food poisoning Aquatic USA 47.5 Public Gi01677 001678_GCAT 417397 18493 640963003 4000 3777 NZ_AAWG00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae B33 Genome PROTEOBACTERIA-GAMMA Draft incomplete Curved-shaped, Motile, Facultative Medical, Human Pathogen Cholera, Food poisoning Aquatic Beira, Mozambique in 2004 USA 47.5 Public Gi01678 001679_GCAT 417400 18499 640963005 4000 3677 NZ_AAWE00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus BACTERIAL Vibrio parahaemolyticus 16 Genome PROTEOBACTERIA-GAMMA incomplete Rod-shaped, Motile, Facultative Medical, Human Pathogen, MMI Cholera, Food poisoning Marine Tampa Bay USA Public Gi01685 001681_GCAT 670 19395 JCVI J Craig Venter Institute Moore Foundation Edwards R rob@salmonella.org Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae NCTC 8457 NCTC 8457 Genome PROTEOBACTERIA-GAMMA Draft incomplete Curved-shaped, Motile, Facultative Medical, Human Pathogen Cholera, Food poisoning Aquatic Clinical specimen in Saudi Arabia in 1910 USA 47.4 Public Gi01680 001682_GCAT 417399 18497 640963006 4100 3975 NZ_AAWD00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus BACTERIAL Vibrio parahaemolyticus AQ3810 Genome PROTEOBACTERIA-GAMMA Draft incomplete Rod-shaped, Motile, Facultative Medical, Human Pathogen Gastroenteritis, Food poisoning Aquatic 20 - 30 Clinical strain isolated isolated from a traveler returning to Japan from Singapore in 1983 USA 45.6 Public Gi01700 001683_GCAT 419109 18601 640963009 5800 5509 NZ_AAWQ00000000 TIGR TIGR NIH-NIAID Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae MZO-2 O14 Genome PROTEOBACTERIA-GAMMA Draft incomplete Rod-shaped, Motile, Facultative Medical, Human Pathogen Cholera, Food poisoning Aquatic Patients with diarrhea in Bangladesh in 2001 USA 47.6 Public Gi01681 001684_GCAT 417398 18495 640963004 3900 3425 NZ_AAWF00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae RC385 O135 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Curved-shaped, Motile, Facultative, Luminescent Medical, Human Pathogen Cholera, Food poisoning Aquatic, Marine 20 - 30 Persistent environmental isolate from Chesapeake Bay USA 47 Public Gi01152 001686_GCAT 345074 15668 638341226 3625 3229 NZ_AAKH00000000 NCBI, TIGR TIGR Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae V51 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Curved-shaped, Motile, Facultative Medical, Human Pathogen Gastrointestinal disease, Cholera, Food poisoning Aquatic, Host, Gastrointestinal tract 20 - 30 USA 47.5 Public Gi01153 001687_GCAT 345075 15669 638341227 3773 3323 NZ_AAKI00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae V52 O37 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Curved-shaped, Motile, Facultative, Pathogen Medical, Human Pathogen Cholera, Food poisoning Aquatic, Host, Gastrointestinal tract 20 - 30 Sudan isolate USA 47 Public Gi01154 001688_GCAT 345076 15670 638341228 3906 3815 NZ_AAKJ00000000 NCBI, TIGR TIGR NIH-NIAID Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae VTV2 Genome PROTEOBACTERIA-GAMMA incomplete Curved-shaped, Motile, Facultative Medical, Human Pathogen Cholera, Food poisoning Aquatic, Host USA 47 Public Gi01277 001689_GCAT 666 TIGR NIH-NIAID Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio harveyi BACTERIAL Vibrio harveyi ATCC BAA-1116 Genome PROTEOBACTERIA-GAMMA incomplete Bioluminescent, Rod-shaped, Motile, Facultative Environmental None Marine 20 - 30 Ocean on 1993 USA Public Gi01129 001690_GCAT 669 16347 640753058 5300 Naval Research Laboratory Office of Naval Research Vora GJ gvora@cbmse.nrl.navy.mil Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio lentus BACTERIAL Vibrio lentus MEL32 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Heterotroph, Rod-shaped, Facultative, Motile Medical, Molluscs Pathogen Juvenile oyster Aquatic Outbreak of juvenile oyster disease in France France Public Gi00764 001692_GCAT 344614 15641 Institut Pasteur Institut Pasteur Mazel D http://www.pasteur.fr/recherche/unites/pgb/vlentus/pgb_vlentus_contact.html Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio salmonicida BACTERIAL Vibrio salmonicida LFI1238 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Heterotroph, Rod-shaped, Facultative, Motile Medical, Fish Pathogen Hitra disease Aquatic European Consortium Public Gi00679 001693_GCAT 316275 13651 4200 PRG, Sanger Institute Univ of Tromso, NORSTRUCT, Sanger Institute Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio splendidus BACTERIAL Vibrio splendidus 12B01 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Heterotroph, Rod-shaped, Motile, Facultative Environmental, Oyester Pathogen, Fish Pathogen, MMI Vibriosis Marine, Surface water Surface waters from Plum Island Ecosystem-LTER USA USA 46 Public Gi00911 001694_GCAT 314291 13568 638341231 5596 5231 NZ_AAMR00000000 NCBI, JCVI J Craig Venter Institute, MIT Moore Foundation Polz M http://cee.mit.edu/index.pl?id=2366&isa=Category&op=show_printer_friendly Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio splendidus BACTERIAL Vibrio splendidus LGP 32 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Heterotroph, Rod-shaped, Motile, Facultative Environmental, Oyester Pathogen, Fish Pathogen Vibriosis Aquatic France Public Gi01155 001695_GCAT 29497 5000 Institut Pasteur Institut Pasteur Mazel D http://www.pasteur.fr/recherche/unites/pgb/pgb_team.html Bacteria Proteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. MED222 BACTERIAL Vibrio sp. MED222 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Motile, Facultative Environmental, MMI None Marine NW Mediterranean Sea at a depth of 1m USA 45 Public Gi00912 001696_GCAT 314290 13616 638341230 4882 4590 NZ_AAND00000000 NCBI, JCVI J Craig Venter Institute, Kalmar Univ Moore Foundation Pinhassi J http://halia.hik.se/start.jsp?page=members/jarone%20pinhassi Bacteria Proteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas albilineans BACTERIAL Xanthomonas albilineans GPE PC73 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Rod-shaped, Aerobe, Motile Agricultural, Plant Pathogen Leaf scald disease Host Guadeloupe France Public Gi01524 001698_GCAT 380358 16687 5000 Genoscope Genoscope Barbe V vbarbe@genoscope.cns.fr Bacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus coahuilensis BACTERIAL Bacillus coahuilensis m4-4 Genome FIRMICUTES incomplete Halophile None Aquatic Cuatro Cienegas Valley in Coahuila Mexico Mexico Public Gi01987 002616_GCAT 441769 19551 Cinvestav Campus Guanajuato Bacteria Actinobacteria Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium animalis BACTERIAL Bifidobacterium animalis lactis AD011 Genome ACTINOBACTERIA incomplete Probiotic, Anaerobe, Rod-shaped, Nonsporulating, Nonmotile, Non-Pathogen Biotechnological, Food industry None Host, Intestinal microflora 39 - 40 Korea Public Gi01988 002617_GCAT 442563 19423 KRIBB Bacteria Proteobacteria Campylobacterales Campylobacteraceae unclassified Candidatus Thioturbo danicus BACTERIAL Thioturbo danicus Td_Nivab1 Genome PROTEOBACTERIA-EPSILON incomplete Vibrio-shaped, Motile MMI None Marine Niva Bay Denmark USA Public Gi01989 002618_GCAT 439501 19385 J Craig Venter Institute Moore Foundation Bacteria Proteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis mediasiatica FSC147 Genome PROTEOBACTERIA-GAMMA incomplete Rod-shaped, Nonmotile, Aerobe, Pathogen Medical, Animal Pathogen, Human Pathogen, Biothreat Tularemia Host, Aquatic Gerbil in central Asia USA Public Gi01990 002619_GCAT 441952 19571 Joint Genome Institute, Los Alamos National Laboratory FOI Bacteria Proteobacteria Campylobacterales Helicobacteraceae Thiovulum Thiovulum majus BACTERIAL Thiovulum majus Tm_Nivab2 Genome PROTEOBACTERIA-EPSILON incomplete Sulfide oxidizer, Motile MMI None Marine USA Public Gi01991 002620_GCAT 439522 19387 J Craig Venter Institute Moore Foundation Bacteria unclassified unclassified unclassified unclassified candidate division TM7 genomosp. GTL1 BACTERIAL Candidate division TM7 GTL1 Metagenome TM7 Draft incomplete None Soil Soil from a rich moist site in Ramona CA USA 48 Public Gi01993 002622_GCAT 443342 19421 680 684 NZ_AAXS00000000 NCBI Diversa, TIGR Keller M kellerm@ornl.gov Bacteria Proteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas axonopodis BACTERIAL Xanthomonas axonopodis pv. aurantifolii B 11122 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Rod-shaped, Motile, Aerobe Agricultural, Plant Pathogen Citrus canker Host 25 - 30 Brazil 64 Public Gi00689 001699_GCAT 189395 18837 5000 Univ of Sao Paulo FAPESP, Univ of Sao Paulo FAPESP Contact bioinfo@citri.iq.usp.br Bacteria Proteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas axonopodis BACTERIAL Xanthomonas axonopodis pv. aurantifolii C 10535 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Rod-shaped, Motile, Aerobe Agricultural, Plant Pathogen Citrus canker Host 25 - 30 Brazil 64 Public Gi00690 001700_GCAT 189395 18835 5000 Univ of Sao Paulo FAPESP, Univ of Sao Paulo FAPESP Contact bioinfo@citri.iq.usp.br Bacteria Proteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas campestris BACTERIAL Xanthomonas campestris campestris B100 campestris Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Aerobe, Motile, Rod-shaped Agricultural, Plant Pathogen Black rot Host 25 - 30 Germany 64 Public Gi00692 001701_GCAT 340 5100 Bielefeld Univ Bielefeld Univ BMBF Puehler A ttp://www.cebitec.uni-bielefeld.de/~puehler Bacteria Proteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas sp. VB58 BACTERIAL Xanthomonas smithii citri Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Rod-shaped, Motile, Aerobe Agricultural, Plant Pathogen Citrus canker Host 38 Brazil Public Gi00694 001702_GCAT 346 13398 5000 Univ of Sao Paulo, FAPESP, UNICAMP FAPESP, Univ of Sao Paulo, UNICAMP FAPESP Contact bioinfo@citri.iq.usp.br Bacteria Proteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas oryzae BACTERIAL Xanthomonas oryzae BLS256 oryzicola Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Rod-shaped, Motile, Aerobe Agricultural, Plant Pathogen Bacterial streak disease Host USA 64 Public Gi01538 001703_GCAT 383407 16740 4831 NZ_AAQN00000000 NCBI TIGR Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Xenorhabdus Xenorhabdus bovienii BACTERIAL Xenorhabdus bovienii SS-2004 Steinernema species Genome PROTEOBACTERIA-GAMMA incomplete Symbiont, Nematode symbiont, Pathogen, Rod-shaped, Nonsporulating, Motile, Facultative Agricultural, Insect Pathogen, Biocontrol Host, Soil, Nematode gut USA Public Gi00698 001704_GCAT 406818 13399 Danforth Science Center Danforth Science Center NSF Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Xenorhabdus Xenorhabdus nematophila BACTERIAL Xenorhabdus nematophila ATCC19061 ATCC19061 Steinernema carpocapsae Genome PROTEOBACTERIA-GAMMA incomplete Symbiont, Nematode symbiont, Pathogen, Rod-shaped, Nonsporulating, Motile, Facultative Agricultural, Insect Pathogen, Biocontrol Host, Soil, Nematode gut USA Public Gi00699 001705_GCAT 406817 13400 Danforth Science Center Danforth Science Center, Monsanto, Hiram College NSF Goldman BS barry.s.goldman@monsanto.com Bacteria Proteobacteria Xanthomonadales Xanthomonadaceae Xylella Xylella fastidiosa BACTERIAL Xylella fastidiosa-almond Dixon ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Rod-shaped, Aerobe Agricultural, Plant Pathogen Almond leaf scorch Host 26 - 28 USA 52 Public Gi00701 001706_GCAT 155919 260 638341237 2600 2358 NZ_AAAL00000000 NCBI, Joint Genome Institute Joint Genome Institute, Univ of California, Berkeley DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Xanthomonadales Xanthomonadaceae Xylella Xylella fastidiosa BACTERIAL Xylella fastidiosa-oleander Ann-1 ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Rod-shaped, Aerobe Agricultural, Plant Pathogen Oleander leaf scorch Host USA 51 Public Gi00702 001707_GCAT 155920 261 638341236 5115 4660 NZ_AAAM00000000 NCBI, Joint Genome Institute Joint Genome Institute, Univ of California, Berkeley DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Xanthomonadales Xanthomonadaceae Xylella Xylella fastidiosa BACTERIAL Xylella fastidiosa M12 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Rod-shaped, Aerobe Agricultural, Plant Pathogen Citrus variegated chlorosis Host USA Public Gi01665 001708_GCAT 405440 17823 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Xanthomonadales Xanthomonadaceae Xylella Xylella fastidiosa BACTERIAL Xylella fastidiosa M23 Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Rod-shaped, Aerobe Agricultural, Plant Pathogen Citrus variegated chlorosis Host Almond tree in California USA 51 Public Gi01701 001709_GCAT 405441 18457 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Xanthomonadales Xanthomonadaceae Xylella Xylella fastidiosa BACTERIAL Xylella fastidiosa Pierce's Disease Strain Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Rod-shaped, Aerobe Agricultural, Plant Pathogen Pierces disease Host 26 - 28 Brazil 51 Public Gi00700 001710_GCAT 2371 2700 UNICAMP Univ of Campinas FAPESP, USDA van Sluys M-A mavsluys@usp.br Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia bercovieri BACTERIAL Yersinia bercovieri ATCC 43970 ABI ATCC 43970, CDC 2475-87, CNY 7506, WAIP 208 Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Facultative, Motile, Rod-shaped Medical, Human Pathogen Gastroenteritis, Food poisoning Host Human feces in France USA 48 Public Gi01169 001711_GCAT 349968 16104 638341238 4301 3579 NZ_AALC00000000 NCBI Naval Medical Research Center DOD Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia frederiksenii BACTERIAL Yersinia frederiksenii ATCC 33641 ABI ATCC 33641 Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Facultative, Motile, Rod-shaped Medical, Human Pathogen Gastroenteritis, Food poisoning Host USA 46 Public Gi01170 001712_GCAT 349966 16106 638341239 4845 4168 NZ_AALE00000000 NCBI Naval Medical Research Center DOD Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia intermedia BACTERIAL Yersinia intermedia ATCC 29909 ABI ATCC 29909 Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Facultative, Motile, Rod-shaped Medical, Human Pathogen Gastroenteritis, Food poisoning Host Hhuman urine USA 47 Public Gi01171 001713_GCAT 349965 16107 638341240 4672 3886 NZ_AALF00000000 NCBI Naval Medical Research Center DOD Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia mollaretii BACTERIAL Yersinia mollaretii ATCC 43969 ABI ATCC 43969, CDC 2465-87, CNY 7263, WAIP 204 Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Facultative, Motile, Rod-shaped Medical, Human Pathogen Gastroenteritis, Food poisoning Host, Aquatic, Food, Soil Soil in the USA USA 49 Public Gi01172 001714_GCAT 349967 16105 638341241 4527 3749 NZ_AALD00000000 NCBI Naval Medical Research Center DOD Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Angola Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Facultative, Motile, Rod-shaped Medical, Human Pathogen Gastroenteritis, Food poisoning, Bubonic plague Host USA 47 Public Gi01173 001715_GCAT 349746 16067 638341242 4360 NZ_AAKS00000000 NCBI TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Orientalis MG05-1020 Orientalis Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Facultative, Motile, Rod-shaped Medical, Human Pathogen, Animal Pathogen Bubonic plague Host Pus collected from a blister on the abdomen of an 8 year old male patient on 2005 USA 47 Public Gi01644 001716_GCAT 404217 17689 5000 NZ_AAYS00000000 TIGR TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Antiqua UG05-0454 Antiqua Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Facultative, Motile, Rod-shaped Medical, Human Pathogen, Animal Pathogen Bubonic plague Host Bubo aspirate from a 10 year old female patient on 2004 USA 47 Public Gi01645 001717_GCAT 404218 17691 4800 NZ_AAYR00000000 TIGR TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Antiqua B42003004 Antiqua Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Facultative, Motile, Rod-shaped Medical, Human Pathogen, Animal Pathogen Bubonic plague Host Gray marmot Marmota baibacina by Chinese plague experts during daily surveillance in Wenquan in China USA 47 Public Gi01278 001718_GCAT 404215 17685 4800 NZ_AAYU00000000 TIGR TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Antiqua E1979001 Antiqua Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Facultative, Motile, Rod-shaped Medical, Human Pathogen, Animal Pathogen Bubonic plague Host Oriental vole Eothenomys miletus by Chinese plague experts during daily surveillance in Jianchuan county in China USA 47 Public Gi01279 001719_GCAT 360099 17683 4800 NZ_AAYV00000000 TIGR TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Orientalis F1991016 Orientalis Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Facultative, Motile, Rod-shaped Medical, Human Pathogen, Animal Pathogen Bubonic plague Host Rattus flavipectus by Chinese plague experts during daily surveillance in Cangyuan county in China USA 47 Public Gi01280 001720_GCAT 404214 17681 4900 NZ_ABAT00000000 TIGR TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Mediaevalis K1973002 Mediaevalis Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Facultative, Motile, Rod-shaped Medical, Human Pathogen, Animal Pathogen Bubonic plague Host Himalayan marmot Marmota himalaya by Chinese plague experts during daily surveillance in Hetian county in China USA 47 Public Gi01281 001721_GCAT 404216 17687 4700 NZ_AAYT00000000 TIGR TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Madagascar Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Facultative, Motile, Rod-shaped Medical, Human Pathogen Bubonic and Pneumonic plague Host USA 47 Public Gi01282 001722_GCAT 632 TIGR TIGR NIH-NIAID Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis 195/P Genome PROTEOBACTERIA-GAMMA incomplete Pathogen, Aerobe, Motile, Rod-shaped Medical, Human Pathogen, Animal Pathogen, Biothreat Bubonic and Pneumonic plague Host USA 47 Public Gi01744 001724_GCAT 632 Univ of Washington Univ of Washington Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis FV-1 Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Aerobe, Motile, Rod-shaped Medical, Human Pathogen, Animal Pathogen, Biothreat Bubonic and Pneumonic plague Host USA 47.6 Public Gi01507 001725_GCAT 375450 16429 4500 NZ_AAUB00000000 Arizona State Univ Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis CA88-4125 Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Aerobe, Motile, Rod-shaped Medical, Human Pathogen, Animal Pathogen, Biothreat Bubonic and Pneumonic plague Host Monterey County California USA Public Gi01959 002585_GCAT 412420 18241 640963031 4700 3851 NZ_ABCD00000000 Joint Genome Institute Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Orientalis IP275 Orientalis ABI Genome PROTEOBACTERIA-GAMMA Draft incomplete Pathogen, Aerobe, Motile, Rod-shaped Medical, Human Pathogen, Animal Pathogen, Biothreat Bubonic and Pneumonic plague Host Madagascar in 1995 from a human case of bubonic plague USA 47 Public Gi01487 001727_GCAT 373665 16376 638341243 5081 4358 1 1 NZ_AAOS00000000 NCBI TIGR Bacteria Bacteroidetes Flavobacteriales Flavobacteriaceae Zobellia Zobellia galactanivorans BACTERIAL Zobellia galactanivorans DsijT ABI 12x Genome BACTEROIDETES incomplete Aerobe, Chemoorganotroph, Heterotroph, Polymer degrader, Rod-shaped, Nonsporulating, Motile Environmental None Aquatic France Public Gi01090 001728_GCAT 63186 16099 4100 Genoscope Genoscope Barbe V vbarbe@genoscope.cns.fr Bacteria Proteobacteria Sphingomonadales Sphingomonadaceae Zymomonas Zymomonas mobilis BACTERIAL Zymomonas mobilis Genome PROTEOBACTERIA-ALPHA incomplete Facultative, Motile, Rod-shaped, Ethanol production Biotechnological, Energy production, Biofuels, Bioenergy None USA Proprietary Gi00706 001729_GCAT 542 1833 1886 Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Bacteria Proteobacteria Myxococcales Myxococcaceae Anaeromyxobacter Anaeromyxobacter dehalogenans BACTERIAL Anaeromyxobacter dehalogenans 2CP-1 ATCC BAA-258 Genome PROTEOBACTERIA-DELTA incomplete Anaerobe, Motile, Sporulating, Rod-shaped, Heterotroph Environmental, Bioremediation None Soil, Sediment Stream sediment near Lansing, Michigan USA 74 Public Gi01321 001730_GCAT 161493 20095 5000 Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Myxococcales Myxococcaceae Anaeromyxobacter Anaeromyxobacter sp. K BACTERIAL Anaeromyxobacter sp K Genome PROTEOBACTERIA-DELTA Draft incomplete Anaerobe, Motile, Sporulating, Rod-shaped, Heterotroph Environmental, Bioremediation, Biotechnological None Soil USA 74 Public Gi01323 001732_GCAT 161492 19743 5000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia ambifaria BACTERIAL Burkholderia ambifaria MEX-5 Teosinte Genome PROTEOBACTERIA-BETA incomplete Rod-shaped, Nonsporulating, Motile, Facultative, Rhizosphere-colonizing, Nitrogen fixation, Pollutant degrader Biocontrol, Agricultural, Biotechnological None Host, Rhizosphere Mexico USA 67 Public Gi01586 001733_GCAT 152480 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia ambifaria BACTERIAL Burkholderia ambifaria IOP40-10 Grass Genome PROTEOBACTERIA-BETA incomplete incomplete Rod-shaped, Nonsporulating, Motile, Facultative, Rhizosphere-colonizing, Nitrogen fixation, Pollutant degrader, Mesophile Biocontrol, Agricultural, Biotechnological None Host, Rhizosphere 28 Rhizosphere of a native tall grass prairie in Iowa USA 67 Public Gi01587 001734_GCAT 396596 20669 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia graminis BACTERIAL Burkholderia graminis C4D1M Maize Genome PROTEOBACTERIA-BETA incomplete Rod-shaped, Nonsporulating, Motile, Facultative, Rhizosphere-colonizing, Nitrogen fixation, Pollutant degrader Biocontrol, Agricultural, Biotechnological None Host, Rhizosphere France USA 67 Public Gi01588 001735_GCAT 396598 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia ambifaria BACTERIAL Burkholderia ambifaria MC40-6 Genome PROTEOBACTERIA-BETA Draft incomplete Rod-shaped, Nonsporulating, Motile, Facultative, Rhizosphere-colonizing, Nitrogen fixation, Pollutant degrader Biocontrol, Agricultural, Biotechnological None Host, Rhizosphere USA 66.4 Public Gi01324 001736_GCAT 398577 17411 639857021 7400 7001 NZ_AAUZ00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cenocepacia BACTERIAL Burkholderia cenocepacia MC0-3 Genome PROTEOBACTERIA-BETA Draft incomplete Pathogen, Motile, Facultative, Rod-shaped, Nonsporulating Medical, Plant Pathogen, Human Pathogen, Agricultural Necrotizing Pneumonia, Chronic infection Host USA 66.6 Public Gi01325 001737_GCAT 406425 17929 639857022 7900 7474 NZ_AAVA00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia multivorans BACTERIAL Burkholderia multivorans ATCC 17616 ABI ATCC 17616 Genome PROTEOBACTERIA-BETA Draft incomplete Motile, Rod-shaped, Facultative, Nonsporulating Medical, Human Pathogen Cepacia syndrome Host 37 USA 66.7 Public Gi01326 001738_GCAT 87883 17407 639857023 6979 6604 NZ_AAVB00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia phymatum BACTERIAL Burkholderia phymatum STM815 ABI 11x Genome PROTEOBACTERIA-BETA Draft incomplete Motile, Rod-shaped, Facultative, Nonsporulating, Nitrogen fixation Agricultural None Host, Soil Root nodule of Machaerium lunatum in French Guiana USA 62.3 Public Gi01327 001739_GCAT 391038 17409 639857009 8900 7845 NZ_AAUG00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia phytofirmans BACTERIAL Burkholderia phytofirmans PsJN ABI 10.9x LMG 22146, CCUG 49060 Genome PROTEOBACTERIA-BETA Draft incomplete Nonsporulating, Rod-shaped, Motile, Facultative, Nitrogen fixation Agricultural None Host, Soil 30 Surface-sterilized onion roots USA 62 Public Gi01328 001740_GCAT 398527 17463 639857010 8088 7327 NZ_AAUH00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium cellulolyticum BACTERIAL Clostridium cellulolyticum H10 ABI, 454 11.5x ATCC 35319 Genome FIRMICUTES Draft incomplete Cellulolytic, Rod-shaped, Sporulating, Motile, Anaerobe Biotechnological, Energy production, Biofuels, Bioenergy None Soil Decayed grass compost USA 37 Public Gi01329 001741_GCAT 394503 17419 639857024 3968 3283 NZ_AAVC00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Clostridiaceae Clostridium Clostridium leptum BACTERIAL Clostridium leptum DSM 753 DSM 753, ATCC 29065 Genome FIRMICUTES Draft incomplete Rod-shaped, Sporulating, Motile, Anaerobe Medical None Host Human feces USA 68 Public Gi01921 002545_GCAT 428125 18923 7000 NZ_ABBR00000000 Washington Univ Washington Univ Bacteria Proteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas testosteroni BACTERIAL Comamonas (Pseudomonas) testosteroni KF-1 ABI 12.8x DSM14576 Genome PROTEOBACTERIA-BETA Draft incomplete Rod-shaped, Aerobe, Motile, Nonsporulating, Surfactant-degrading Biotechnological None Sludge Activated sludge USA 61.8 Public Gi01330 001742_GCAT 399795 17465 639857012 5906 5454 NZ_AAUJ00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Chloroflexi unclassified unclassified Dehalococcoides Dehalococcoides sp. enrichment culture clone pDehV1 BACTERIAL Dehalococcoides sp GT Genome CHLOROFLEXI incomplete Anaerobe, Dechlorinates Tetrachloroethene, Motile, Mesophile, Chemolithotroph Environmental, Ecological, Bioremediation, Biotechnological None Groundwater, Aquatic USA Public Gi01331 001743_GCAT 61434 1500 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Desulfobacterales Desulfobacteraceae Desulfatibacillum Desulfatibacillum alkenivorans BACTERIAL Desulfatibacillum alkenivorans AK-01 Genome PROTEOBACTERIA-DELTA incomplete Sulfate reducer, Alkane degrader, Nonmotile, Nonsporulating, Rod-shaped, Anaerobe Biotechnological, Environmental None Aquatic 26 - 28 Sediment from the Arthur Kill, NJ/NY waterway USA Public Gi01333 001745_GCAT 439235 19449 6000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Cyanobacteria Chroococcales unclassified Cyanobacterium Cyanobacterium sp. CR_23M BACTERIAL Cyanobacterium sp JSC-1 Genome CYANOBACTERIA incomplete Photosynthetic Biotechnological, Environmental None Aquatic USA Public Gi02032 002661_GCAT 102234 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Desulfobacterales Desulfobacteraceae Desulfobacterium Desulfobacterium zeppelinii BACTERIAL Desulfobacterium sp Genome PROTEOBACTERIA-DELTA incomplete Rod-shaped, Nonmotile, Anaerobe Biotechnological, Environmental None Aquatic USA Public Gi02033 002662_GCAT 2295 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Enterobacter Enterobacter sp. BACTERIAL Enterobacter sp R558-1 Genome PROTEOBACTERIA-GAMMA incomplete Facultative, Rod-shaped, Motile, Endophyte Agricultural None Host USA Public Gi02034 002663_GCAT 42895 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli B ATCC 11303 Genome PROTEOBACTERIA-GAMMA Draft incomplete Rod-shaped, Motile, Nonsporulating, Facultative, Non-Pathogen Medical None Host, Human intestinal microflora K-12 derivative USA 50 Public Gi01337 001749_GCAT 37762 18083 640196207 4651 4360 NZ_AAWW00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli B REL606 Genome PROTEOBACTERIA-GAMMA incomplete Rod-shaped, Motile, Nonsporulating, Facultative, Non-Pathogen Medical None Host, Human intestinal microflora International Public Gi01702 001750_GCAT 413997 18281 International E. coli B Consortium Bacteria Proteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 GZ-021210/cattle Genome PROTEOBACTERIA-GAMMA incomplete Rod-shaped, Motile, Nonsporulating, Facultative, Pathogen Medical, Human Pathogen Hemorrhagic colitis Host, Human intestinal microflora International Public Gi01703 001751_GCAT 410290 18005 South China Agricultural Univ Bacteria Proteobacteria Desulfuromonadales Geobacteraceae Geobacter Geobacter lovleyi BACTERIAL Geobacter lovleyi SZ DSM 17278, ATCC BAA-1151 Genome PROTEOBACTERIA-DELTA Draft incomplete Rod-shaped, Motile, Anaerobe, Metal reducer, Nonsporulating, Chemolithotroph Biotechnological None Aquatic, Soil, Sediment 6.8 35 Noncontaminated creek sediment in June 2002 near Seoul South Korea USA 54.8 Public Gi01338 001752_GCAT 398767 17423 639857028 3871 3476 NZ_AAVG00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Desulfuromonadales Geobacteraceae Geobacter Geobacter sp. M21 BACTERIAL Geobacter sp. M21 Genome PROTEOBACTERIA-DELTA incomplete incomplete Rod-shaped, Motile, Anaerobe, Metal reducer, Chemolithotroph Biotechnological None Aquatic, Soil, Sediment USA Public Gi02329 002983_GCAT 443144 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Nitrospirae Nitrospirales Nitrospiraceae Leptospirillum Leptospirillum ferrooxidans BACTERIAL Leptospirillum ferrooxidans Markosian L15 DSM 2705 Genome NITROSPIRAE incomplete Iron oxidizer, Acidophile Biotechnological None Aquatic USA Public Gi01339 001753_GCAT 180 2500 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Nitrospirae Nitrospirales Nitrospiraceae Leptospirillum Leptospirillum ferrooxidans BACTERIAL Leptospirillum ferrooxidans ATCC 53993 DSM 2705, ATCC 53993 Genome NITROSPIRAE incomplete Iron oxidizer, Acidophile, Spiral-shaped, Motile, Nonsporulating, Aerobe Biotechnological, Bioleaching None Aquatic 1.3-4.0 USA Public Gi01527 001754_GCAT 380394 16689 2500 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Methylobacteriaceae Methylobacterium Methylobacterium chloromethanicum BACTERIAL Methylobacterium chloromethanicum CM4 VKM B-2223, NCIMB 13688 Genome PROTEOBACTERIA-ALPHA Draft incomplete Aerobe, Methylotroph, Motile, Rod-shaped Biotechnological, Environmental None Soil 30 Soil at a petrochemical factory in Tatarstan Russia USA Public Gi01341 001756_GCAT 440085 19527 640963008 7000 5648 NZ_ABEX00000000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Methylobacteriaceae Methylobacterium Methylobacterium extorquens BACTERIAL Methylobacterium extorquens PA1 Genome PROTEOBACTERIA-ALPHA Draft incomplete Facultative, Methylotroph, Motile, Rod-shaped Biotechnological, Methanol production None 25 - 30 USA Public Gi01342 001757_GCAT 419610 18637 640963001 5000 4936 NZ_ABEC00000000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Methylobacteriaceae Methylobacterium Methylobacterium nodulans BACTERIAL Methylobacterium nodulans ORS2060 CNCM I 2342, LMG 21967 Crotalaria Genome PROTEOBACTERIA-ALPHA incomplete incomplete Aerobe, Methylotroph, Motile, Rod-shaped, Nitrogen fixation, Mesophile, Nonsporulating, Symbiont Biotechnological, Agricultural None Host Root nodules from the legume Crotalaria USA Public Gi01343 001758_GCAT 460265 20477 7000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Methylobacteriaceae Methylobacterium Methylobacterium populi BACTERIAL Methylobacterium populi BJ001 ATCC BAA-705, NCIMB 13946 Populus Genome PROTEOBACTERIA-ALPHA Draft incomplete Aerobe, Methylotroph, Motile, Rod-shaped, Nonsporulating, Endophyte Biotechnological, Agricultural None Host 20 - 30 USA 69.3 Public Gi01344 001759_GCAT 441620 19559 7000 ABFR00000000 Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Methylobacteriaceae Methylobacterium Methylobacterium radiotolerans BACTERIAL Methylobacterium radiotolerans JCM 2831T DSM 1819, ATCC 27329, JCM 2831 Legumes Genome PROTEOBACTERIA-ALPHA incomplete Aerobe, Methylotroph, Motile, Rod-shaped, Nitrogen fixation Biotechnological None Host USA Public Gi01345 001760_GCAT 426355 18817 7000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. 4-46 BACTERIAL Methylobacterium sp 4-46 Genome PROTEOBACTERIA-ALPHA Draft incomplete Aerobe, Methylotroph, Motile, Rod-shaped Biotechnological None USA 71.4 Public Gi01346 001761_GCAT 426117 18809 640963049 7900 7003 NZ_ABAY00000000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Beijerinckiaceae Methylocapsa Methylocapsa acidiphila BACTERIAL Methylocapsa acidiphila B2T DSM 13967, NCIMB 13765 Genome PROTEOBACTERIA-ALPHA incomplete Aerobe, Methylotroph, Nonmotile, Coccus-shaped, Methane oxidation, Acidophile, Psychrotolerant Biotechnological None 4.2-7.2 10 - 30 Acidic Sphagnum peat bog USA 63.1 Public Gi01550 001762_GCAT 395964 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Rhizobiales Beijerinckiaceae Methylocella Methylocella silvestris BACTERIAL Methylocella silvestris BL2 DSM 15510, NCIMB 13906 Genome PROTEOBACTERIA-ALPHA incomplete Aerobe, Methylotroph, Nonmotile, Rod-shaped, Methane oxidation, Acidophile, Psychrotolerant Biotechnological None 4.5-7 4 - 30 Acidic forest cambisol near Marburg Germany USA 60 Public Gi01549 001763_GCAT 395965 20635 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Desulfobacterales Desulfobulbaceae Desulfobulbus Desulfobulbus propionicus BACTERIAL Desulfobulbus propionicus Lindhorst, DSM 2032 DSM 2032, ATCC 33891 Genome PROTEOBACTERIA-DELTA incomplete incomplete Anaerobe, Mesophile GEBA None Aquatic, Marine, Sediment 6.6 - 7.5 37 Freshwater mud in Germany USA Public Gi02535 003262_GCAT 894 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Fusobacteria Fusobacteriales Fusobacteriaceae Ilyobacter Ilyobacter polytropus BACTERIAL Ilyobacter polytropus CuHBu1, DSM 2926 DSM 2926 Genome FUSOBACTERIA incomplete incomplete Anaerobe, Mesophile, Nonsporulating, Rod-shaped, Chemoorganotroph GEBA None Marine 30 Marine mud from Germany USA 32 Public Gi02536 003263_GCAT 167642 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Archaea Euryarchaeota Methanomicrobiales Methanomicrobiaceae Methanofollis Methanofollis liminatans ARCHAEAL Methanofollis liminatans GKZPZ, DSM 4140 DSM 4140 Genome EURYARCHAEOTA-METHANOMICROBIA incomplete incomplete Methanogen, Mesophile, Anaerobe GEBA None Wastewater 37 Industrial wastewater treatment plant from Germany USA 60 Public Gi02537 003264_GCAT 2201 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Planctomycetes Planctomycetales Planctomycetaceae Pirellula Pirellula staleyi BACTERIAL Pirellula staleyi DSM 6068 DSM 6068, ATCC 27377, ICPB 4128 Genome PLANCTOMYCETES incomplete incomplete Mesophile, Motile, Aerobe GEBA None Aquatic, Fresh water 26 USA Public Gi02538 003265_GCAT 125 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Coriobacteriales Coriobacteriaceae Olsenella Olsenella uli BACTERIAL Olsenella uli VPI, DSM 7084 DSM 7084, ATCC 49627 Genome ACINOBACTERIA incomplete incomplete Anaerobe GEBA None 37 Human gingival crevice USA Public Gi02539 003266_GCAT 133926 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Bacillales Alicyclobacillaceae Sulfobacillus Sulfobacillus thermosulfidooxidans BACTERIAL Sulfobacillus thermosulfidooxidans AT-1, DSM 9293 DSM 9293, VKM B-1269 Genome FIRMICUTES incomplete incomplete Thermophile, Sporulating, Acidophile, Iron oxidizer, Sulphide oxidizer, Autotroph, Mixotroph GEBA None 50 Spontaneously heated ore deposit from Eastern Kazakhstan USA Public Gi02540 003267_GCAT 28034 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Bacillales Alicyclobacillaceae Sulfobacillus Sulfobacillus acidophilus BACTERIAL Sulfobacillus acidophilus NAL, DSM 10332 DSM 10332 Genome FIRMICUTES incomplete incomplete Thermophile, Acidophile, Iron oxidizer, Sulphide oxidizer, Autotroph, Mixotroph, Sporulating GEBA None USA 56 Public Gi02541 003268_GCAT 53633 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Syntrophomonadaceae Aminomonas Aminomonas paucivorans BACTERIAL Aminomonas paucivorans GLU-3, DSM 12260 DSM 12260, ATCC BAA-6 Genome FIRMICUTES incomplete incomplete Aminoacid degrading, Obligate anaerobe, Nonsporulating, Rod-shaped, Mesophile GEBA None Aquatic 7.5 35 Anaerobic lagoon of a dairy wastewater treatment plant in Colombia USA 43 Public Gi02542 003269_GCAT 81412 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Thermoanaerobacteriales Thermoanaerobacteriaceae Mahella Mahella australiensis BACTERIAL Mahella australiensis 50-1 BON, DSM 15567 DSM 15567, CIP 107919 Genome FIRMICUTES incomplete incomplete Anaerobe, Thermophile, Sporulating, Rod-shaped, Motile GEBA None Oil fields 7.5 50 Riverslea oil field in the Bowen-Surat basin, Australia USA 55.5 Public Gi02543 003270_GCAT 252966 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Campylobacterales Helicobacteraceae Sulfurimonas Sulfurimonas autotrophica BACTERIAL Sulfurimonas autotrophica OK10, DSM 16294 DSM 16294, ATCC BAA-671, JCM 11897 Genome PROTEOBACTERIA-EPSILON incomplete incomplete Mesophile, Sulfur oxidizer, Rod-shaped, Motile GEBA None Marine, Sediment 4.5 - 9.0 24 Deep-sea sediments at the Hatoma Knoll in the Mid-Okinawa Trough hydrothermal field in Japan USA 35.2 Public Gi02544 003271_GCAT 202747 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Clostridiaceae Ethanoligenens Ethanoligenens harbinense BACTERIAL Ethanoligenens harbinense YUAN-3T, DSM 18485 DSM 18485, JCM 12961T, CGMCC 1.5033T Genome FIRMICUTES incomplete incomplete Obligate anaerobe, Nonsporulating, Mesophile, Motile, Rod-shaped GEBA None Sludge 3.5 - 9.0 20 - 44 Anaerobic activated sludge of molasses wastewater in a continuous stirred-tank reactor USA 47.8 Public Gi02545 003272_GCAT 253239 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Peptostreptococcaceae Peptoniphilus Peptoniphilus asaccharolyticus BACTERIAL Peptoniphilus asaccharolyticus UW 228, DSM 20463 DSM 20463, ATCC 14963, NCIB 10074 Genome FIRMICUTES incomplete incomplete Mesophile, Anaerobe GEBA None 37 USA Public Gi02546 003273_GCAT 1258 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Actinomycetales Actinomycetaceae Arcanobacterium Arcanobacterium haemolyticum BACTERIAL Arcanobacterium haemolyticum CCM, DSM 20595 DSM 20595, ATCC 9345, CCM 5947, NCTC 8452 Genome ACTINOBACTERIA incomplete incomplete Anaerobe, Mesophile, Rod-shaped, Nonmotile, Nonsporulating, Chemoorganotroph GEBA, Medical, Human Pathogen Sepsis, Osteomyelitis, Pharyngitis, Tonsillitis Host, Blood 37 USA Public Gi02547 003274_GCAT 28264 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Actinobacteria Coriobacteriales Coriobacteriaceae Coriobacterium Coriobacterium glomerans BACTERIAL Coriobacterium glomerans PW2, DSM 20642 DSM 20642, ATCC 49209, JCM 10262 Pyrrhocoris apterus Genome ACTINOBACTERIA incomplete incomplete Mesophile, Obligate anaerobe, Rod-shaped, Nonsporulating, Nonmotile, Chemoorganotroph GEBA None Host, Intestinal tract 30 Intestinal tract of the red soldier bug USA Public Gi02548 003275_GCAT 33871 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria BACTERIAL Sporichthya polymorpha DSM 43042 DSM 43042, ATCC 23823, IFO 12702, IMRU 3913, KCC A-0089, NBRC 12702 Genome ACTINOBACTERIA incomplete incomplete Motile GEBA None Soil 28 Greenhouse soil USA Public Gi02549 003276_GCAT 33871 Joint Genome Institute, DSMZ DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida BACTERIAL Pseudomonas putida GB-1 ABI 16x Genome PROTEOBACTERIA-GAMMA Draft incomplete Aerobe, Motile, Rod-shaped, Non-Pathogen, Mesophile, Heterotroph Bioremediation, Environmental None Soil USA 61 Public Gi01349 001766_GCAT 76869 17629 640196210 6053 5441 NZ_AAXR00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida BACTERIAL Pseudomonas putida W619 ABI 11x Populus trichocarpa x deltoides Genome PROTEOBACTERIA-GAMMA Draft incomplete Aerobe, Motile, Rod-shaped, Non-Pathogen, Endophyte, Mesophile, Heterotroph Bioremediation, Environmental, Agricultural None Soil, Host USA 61 Public Gi01350 001767_GCAT 390235 17053 639857038 5748 5185 NZ_AAVY00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia pickettii BACTERIAL Ralstonia pickettii 12J ABI 10x Genome PROTEOBACTERIA-BETA Draft incomplete Aerobe, Heterotroph, Rod-shaped, Pathogen, Motile, Heterotroph, Mesophile Medical, Human Pathogen Nosocomial infection Soil, Aquatic, Host USA 63.7 Public Gi01351 001768_GCAT 402626 17631 640196203 5300 4938 NZ_AAWK00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia pickettii BACTERIAL Ralstonia pickettii 12D ABI Genome PROTEOBACTERIA-BETA Draft incomplete Aerobe, Heterotroph, Rod-shaped, Pathogen, Motile, Mesophile Medical, Human Pathogen Nosocomial infection Soil, Aquatic, Host Copper-contaminated sediment from a lake in Michigan USA Public Gi01352 001769_GCAT 428406 18937 640963017 5641 5335 NZ_ABDZ00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella halifaxensis BACTERIAL Shewanella halifaxensis HAW-EB4T NCIMB 14093, DSM 17350 Genome PROTEOBACTERIA-GAMMA incomplete incomplete Facultative, Denitrifying, Psychrophile, Motile, Rod-shaped, Nonsporulating Biotechnological, Degrades RDX None Marine Sediment of the Emerald Basin at 215m depth offshore of Halifax Harbour in the Atlantic Ocean USA 45 Public Gi01354 001771_GCAT 458817 20241 5000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella woodyi BACTERIAL Shewanella woodyi MS32 ABI 12.4x ATCC 51908 Genome PROTEOBACTERIA-GAMMA Draft incomplete Facultative, Psychrophile, Motile, Rod-shaped Biotechnological, Degrades RDX None Marine 25 300m depth in the Alboran Sea USA 43.7 Public Gi01357 001774_GCAT 392500 17455 639857017 5813 4754 NZ_AAUO00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Xanthomonadales Xanthomonadaceae Stenotrophomonas Stenotrophomonas maltophilia BACTERIAL Stenotrophomonas maltophilia R551-3 ABI 12x Genome PROTEOBACTERIA-GAMMA Draft incomplete Aerobe, Pathogen, Rod-shaped, Nonfermentative Medical, Human Pathogen Nosocomial infection, Blood infection, Respiratory infection, Urinary infection Aquatic, Soil, Host, Plants USA 66 Public Gi01359 001776_GCAT 391008 17107 639857039 4544 4032 NZ_AAVZ00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Thermoanaerobacteriales Thermoanaerobacteriaceae Thermoanaerobacterium Thermoanaerobacterium saccharolyticum BACTERIAL Thermoanaerobacterium xylanolyticum LX11 DSM 7097 Genome FIRMICUTES incomplete Thermophile, Anaerobe, Saccharolytic, Rod-shaped, Motile, Sporulating Biotechnological None Aquatic USA Public Gi01360 001777_GCAT 28896 3000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Thermoanaerobacteriales Thermoanaerobacteriaceae Thermoanaerobacter Thermoanaerobacter italicus BACTERIAL Thermoanaerobacterium italicus Ab9 DSM9252 Genome FIRMICUTES incomplete Thermophile, Anaerobe, Saccharolytic, Rod-shaped, Motile, Sporulating Biotechnological None Aquatic 70 Thermal spa in Italy USA Public Gi02024 002653_GCAT 108150 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Thermoanaerobacteriales Thermoanaerobacteriaceae Thermacetogenium Thermacetogenium phaeum BACTERIAL Thermacetogenium phaeum PB DSM 2245B Genome FIRMICUTES incomplete Thermophile, Anaerobe, Syntrophic, Sporulating, Rod-shaped Biotechnological None Aquatic 6.8 58 thermophilic anaerobic methanogenic reactor USA 53.5 Public Gi02025 002654_GCAT 85874 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Proteobacteria Campylobacterales Campylobacteraceae Sulfurospirillum Sulfurospirillum cavolei BACTERIAL Sulfurospirillum sp. Genome PROTEOBACTERIA-EPSILON incomplete Sulfur reducer Biotechnological None Aquatic USA 53.5 Public Gi02026 002655_GCAT 57665 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Bacteria Firmicutes Clostridiales Acidaminococcaceae Thermosinus Thermosinus carboxydivorans BACTERIAL Thermosinus carboxydivorans Nor1 ABI 11x DSM 14886, VKM B-2281 Genome FIRMICUTES Draft incomplete Anaerobe, Thermophile, Carboxydotroph, Motile, Rod-shaped, Chemolithotroph, Carbon monoxide oxidizer Biotechnological None Aquatic, Hot spring 60 Hot spring at Norris Basin Yellowstone National Park USA 51.7 Public Gi01361 001778_GCAT 401526 17587 640196202 3000 2750 NZ_AAWL00000000 NCBI Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Archaea Crenarchaeota Sulfolobales Sulfolobaceae Acidianus Acidianus brierleyi ARCHAEAL Acidianus (Sulfolobus) brierleyi Genome CRENARCHAEOTA-THERMOPROTEI incomplete Facultative, Acidophile, Thermophile, Sulfur metabolizing, Nonmotile, Lithotroph Biotechnological, Bioleaching None Aquatic Denmark Public Gi00001 001779_GCAT 41673 199 1800 Univ of Copenhagen Garrett RA garrett@mermaid.molbio.ku.dk Archaea Crenarchaeota Cenarchaeales Cenarchaeaceae Cenarchaeum Cenarchaeum symbiosum ARCHAEAL Cenarchaeum symbiosum. Genome CRENARCHAEOTA-CENARCHAEA incomplete Psychrophile, Symbiont, Rod-shaped Evolutionary None Aquatic, Host USA Proprietary Gi00135 001780_GCAT 46770 2500 Diversa Diversa Archaea Euryarchaeota Thermoplasmatales Ferroplasmaceae Ferroplasma Ferroplasma acidarmanus ARCHAEAL Ferroplasma acidarmanus Fer1 ABI Metagenome EURYARCHAEOTA-THERMOPLASMATA Draft incomplete Acidophile, Facultative, Rod-shaped, Nonmotile Bioremediation, Environmental None 5-way CG region of Richmond Mine at Iron Mountain, CA USA 36.8 Public Gi00249 001781_GCAT 333146 239 638341092 1865 1695 NZ_AABC00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Archaea Euryarchaeota Halobacteriales Halobacteriaceae Halobacterium Halobacterium salinarum ARCHAEAL Halobacterium salinarum RI DSM671, ATCC 19700 Genome EURYARCHAEOTA-HALOBACTERIA incomplete Aerobe, Halophile, Motile, Rod-shaped, Thermophile Biotechnological None 50 Germany Public Gi00290 001782_GCAT 2242 106 2000 Max Planck Institute Max Planck Institute Pfeiffer F fpf@rzg.mpg.de Archaea Euryarchaeota Halobacteriales Halobacteriaceae Halobiforma Halobiforma lacisalsi ARCHAEAL Halobiforma lacisalsi AJ5 CGMCC 1.3738, JCM 12983 Genome EURYARCHAEOTA-HALOBACTERIA incomplete Facultative, Halophile, Motile, Neutrophilic Biotechnological None Aquatic Ayakekumsalt lake in Xinjian China at an altitude of 3880m China 64.9 Public Gi01397 001783_GCAT 358396 16192 Zhejiang Univ Archaea Euryarchaeota Halobacteriales Halobacteriaceae Halobaculum Halobaculum gomorrense ARCHAEAL Halobaculum gomorrense Genome EURYARCHAEOTA-HALOBACTERIA incomplete Halophile, Rod-shaped Biotechnological None Aquatic Dead Sea USA 70 Public Gi00721 001784_GCAT 43928 13229 UMBI, Institute for Systems Biology NSF Goo Y ygoo@systemsbiology.org Archaea Euryarchaeota Halobacteriales Halobacteriaceae Haloferax Haloferax volcanii ARCHAEAL Haloferax volcanii DS2 ATCC 29605 Genome EURYARCHAEOTA-HALOBACTERIA incomplete Disc-shaped, Chemoorganotroph, Halophile, Aerobe, Motile Biotechnological None Aquatic USA Public Gi00293 001785_GCAT 309800 4200 Univ of Scranton, report Univ of Scranton, Integrated Genomics Inc Delvecchio V Vimbm@aol.com Archaea Euryarchaeota Halobacteriales Halobacteriaceae Haloferax Haloferax volcanii ARCHAEAL Haloferax volcanii DS2 Genome EURYARCHAEOTA-HALOBACTERIA incomplete Disc-shaped, Chemoorganotroph, Halophile, Aerobe, Motile Biotechnological None Aquatic USA Public Gi00292 001786_GCAT 309800 12524 4200 TIGR NSF Eisen JA http://www.tigr.org/~jeisen/ Bacteria Proteobacteria Oceanospirillales Halomonadaceae Chromohalobacter Chromohalobacter salexigens BACTERIAL Halomonas elongata DSM 3043 DSM 3043 Genome PROTEOBACTERIA-GAMMA incomplete Halophile, Motile, Facultative, Rod-shaped, Nonsporulating Biotechnological, Environmental None Aquatic USA Public Gi00713 001787_GCAT 290398 13230 Hiram College, Purdue Univ, TIGR Bacteria Firmicutes Halanaerobiales Halanaerobiaceae Halothermothrix Halothermothrix orenii BACTERIAL Halothermothrix orenii H 168 ABI 12.5x DSM 9562 Genome FIRMICUTES complete complete Thermophile, Anaerobe, Halophile Biotechnological None Aquatic Salted lake sediment USA 39.6 Public Gi01049 001788_GCAT 373903 16377 638341104 2463 2273 NZ_AAOZ00000000 NCBI Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Archaea Euryarchaeota Halobacteriales Halobacteriaceae Halorubrum Halorubrum lacusprofundi ARCHAEAL Halorubrum lacusprofundi ATCC 49239 ATCC 49239 Genome EURYARCHAEOTA-HALOBACTERIA Draft incomplete Halophile, Psychrophile, Rod-shaped, Motile, Aerobe Biotechnological None Aquatic 31 - 37 USA 58 Public Gi01050 001789_GCAT 416348 18455 640963000 4300 2769 NZ_ABEB00000000 Joint Genome Institute DOE Anderson I IJAnderson@lbl.gov Archaea Euryarchaeota Halobacteriales Halobacteriaceae Halorubrum Halorubrum lacusprofundi ARCHAEAL Halorubrum lacusprofundi Genome-Regions EURYARCHAEOTA-HALOBACTERIA incomplete Halophile, Rod-shaped, Motile, Aerobe, Psychrophile Biotechnological None Aquatic USA Public Gi00720 001790_GCAT 2247 13235 Entrez UMBI, Institute for Systems Biology NSF Goo Y ygoo@systemsbiology.org Archaea Euryarchaeota Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter ruminantium ARCHAEAL Methanobrevibacter ruminantium Genome EURYARCHAEOTA-METHANOBACTERIA incomplete Methanogen, Lithotroph Biotechnological, Bioenergy None New Zealand Public Gi01112 001791_GCAT 83816 AgResearch Archaea Euryarchaeota Methanococcales Methanococcaceae Methanothermococcus Methanothermococcus thermolithotrophicus ARCHAEAL Methanothermococcus thermolithotrophicus Genome EURYARCHAEOTA-METHANOCOCCI incomplete Methanogen, Thermophile, Lithotroph, Anaerobe, Coccus-shaped, Motile, Lithotroph Energy production, Biotechnological None Aquatic 65 USA Proprietary Gi00357 001793_GCAT 2186 13627 Molecular Dynamics, Integrated Genomics Inc Molecular Dynamics Feldman RA robert.feldman@am.apbiotech.com Archaea Euryarchaeota Methanococcales Methanococcaceae Methanococcus Methanococcus voltae ARCHAEAL Methanococcus voltae Genome EURYARCHAEOTA-METHANOCOCCI incomplete Methanogen, Carbon cycle, Motile, Coccus-shaped, Anaerobe, Lithotroph Energy production, Biotechnological None Aquatic USA Proprietary Gi00358 001794_GCAT 2188 13632 Molecular Dynamics, Integrated Genomics Inc Molecular Dynamics Feldman RA robert.feldman@am.apbiotech.com Archaea Euryarchaeota Methanosarcinales Methanosarcinaceae Methanohalobium Methanohalobium evestigatum ARCHAEAL Methanohalobium evestigatum Halophiles Genome EURYARCHAEOTA-METHANOMICROBIA incomplete Autotroph, Halophile, Methanogen, Lithotroph Tree of Life None Aquatic 7 40 - 50 Microbial mat community in Crimea, Russia USA 37 Public Gi01749 001796_GCAT 2322 3000 Joint Genome Institute DOE Anderson I IJAnderson@lbl.gov Archaea Euryarchaeota Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum ARCHAEAL Methanobacterium formicicum MF Genome EURYARCHAEOTA-METHANOBACTERIA incomplete Methanogen, Lithotroph, Lithotroph Tree of Life None Aquatic, Host Sewage sludge digestor in Urbana Illinois USA 41 Public Gi01750 001797_GCAT 2162 1800 Joint Genome Institute DOE Anderson I IJAnderson@lbl.gov Archaea Euryarchaeota Archaeoglobales Archaeoglobaceae Ferroglobus Ferroglobus placidus ARCHAEAL Ferroglobus placidus Genome EURYARCHAEOTA-ARCHAEOGLOBI incomplete Coccus-shaped, Anaerobe, Iron oxidizer, Hyperthermophile Tree of Life None Aquatic, Hydrothermal vent 7 85 Hallow submarine hydrothermal system at Vulcano Italy USA 43 Public Gi01752 001799_GCAT 54261 1900 Joint Genome Institute DOE Anderson I IJAnderson@lbl.gov Archaea Crenarchaeota Sulfolobales Sulfolobaceae Acidianus Acidianus sulfidivorans ARCHAEAL Acidianus sp JP7 Genome CRENARCHAEOTA-THERMOPROTEI incomplete Thermophile, Acidophile, Iron oxidizer, Facultative Tree of Life, Biotechnological, Bioleaching None Aquatic 50 - 80 Hydrothermal site in Papua New Guinea USA 31.1 Public Gi01753 001800_GCAT 312539 1900 Joint Genome Institute DOE Anderson I IJAnderson@lbl.gov Archaea Euryarchaeota Methanomicrobiales Methanomicrobiaceae Methanogenium Methanogenium frigidum ARCHAEAL Methanogenium frigidum Ace-2 SMCC 459W Genome EURYARCHAEOTA-METHANOMICROBIA incomplete Methanogen, Psychrophile, Carbon cycle, Nonmotile, Coccus-shaped, Halophile, Lithotroph Energy production, Biotechnological None Aquatic 6.5-7.9 15 Ace Lake in Vestfold Hills Antarctica at a depth of 24m Australia Public Gi00359 001801_GCAT 313587 UNSW Univ of New South Wales, Australian Genome Research Facility, Molecular Dynamics Cavicchioli R http://www.babs.unsw.edu.au/research/ehm/lab_cavicchioli.html Archaea Euryarchaeota Methanomicrobiales Methanomicrobiaceae Methanogenium Methanogenium frigidum ARCHAEAL Methanogenium frigidum Ace-2 (=SMCC459W) Genome EURYARCHAEOTA-METHANOMICROBIA incomplete Methanogen, Psychrophile, Carbon cycle, Lithotroph Environmental, Energy production, Biotechnological, MMI None Marine Vestfold Hills in Antarctica at a depth of 24 meters USA Public Gi00913 001802_GCAT 313587 13497 5000 JCVI J Craig Venter Institute, Univ of New South Wales Moore Foundation Cavicchioli R http://www.babs.unsw.edu.au/research/ehm/lab_cavicchioli.html Archaea Euryarchaeota Methanosarcinales Methanosarcinaceae Methanimicrococcus Methanimicrococcus blatticola ARCHAEAL Methanimicrococcus blatticola PAT DSM 13328 Periplaneta americana Genome EURYARCHAEOTA-METHANOMICROBIA incomplete Methanogen, Coccus-shaped, Lithotroph Biotechnological, Energy production None Host, Hindgut 7.2-7.7 39 Hindgut of the cockroach Periplaneta americana USA Public Gi01583 001803_GCAT 91560 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Archaea Euryarchaeota Methanopyrales Methanopyraceae Methanopyrus Methanopyrus kandleri ARCHAEAL Methanopyrus kandleri Genome EURYARCHAEOTA-METHANOPYRI incomplete Methanogen, Hyperthermophile, Lithotroph Energy production, Biotechnological None USA Proprietary Gi00360 001804_GCAT 2320 Molecular Dynamics, Univ of Illinois at Urbana-Champaign, Integrated Genomics Inc Molecular Dynamics Feldman RA robert.feldman@am.apbiotech.com Archaea Euryarchaeota Methanosarcinales Methanosaetaceae Methanosaeta Methanosaeta concilii ARCHAEAL Methanosaeta concilii GP-6 Genome EURYARCHAEOTA-METHANOMICROBIA incomplete Methanogen, Lithotroph Biotechnological, Energy production None Aquatic USA Public Gi00081 001805_GCAT 2223 Univ of Washington Clemson Univ, Univ of Washington NSF Smith K http://www.clemson.edu/genbiochem/People-Faculty-SmithK.html Archaea Euryarchaeota Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina acetivorans ARCHAEAL Methanosarcina acetivorans Genome EURYARCHAEOTA-METHANOMICROBIA incomplete Methanogen, Carbon cycle, Nonsporulating, Nonmotile, Anaerobe, Lithotroph Energy production, Biotechnological None Aquatic Germany Public Gi00361 001807_GCAT 2214 Goettingen Genomics Laboratory Goettingen Genomics Laboratory Archaea Crenarchaeota Desulfurococcales Desulfurococcaceae Staphylothermus Staphylothermus hellenicus ARCHAEAL Staphylothermus hellenicus P8T DSM 12710T, JCM 10830T Genome CRENARCHAEOTA-THERMOPROTEI incomplete incomplete Hyperthermophile, Anaerobe, Heterotroph, Coccus-shaped Biotechnological, Tree of Life None Aquatic, Hydrothermal vent 6 85 Shallow hydrothermal vents off Palaeochori Bay, Milos, Greece USA 38 Public Gi02533 003259_GCAT 84599 1800 Joint Genome Institute DOE Anderson I IJAnderson@lbl.gov Archaea Crenarchaeota Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum aerophilum ARCHAEAL Pyrobaculum aerophilum Genome CRENARCHAEOTA-THERMOPROTEI incomplete Thermophile, Hyperthermophile, Autotroph, Aerobe, Motile, Rod-shaped, Nonsporulating Biotechnological None Aquatic USA 51 Public Gi01054 001810_GCAT 13773 2200 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Archaea Crenarchaeota Thermoproteales Thermoproteaceae Thermoproteus Thermoproteus neutrophilus ARCHAEAL Thermoproteus neutrophilus V24Sta Genome CRENARCHAEOTA-THERMOPROTEI incomplete Thermophile, Hyperthermophile, Autotroph, Anaerobe, Nonmotile, Nonsporulating, Rod-shaped Biotechnological None Aquatic 85 Hot spring in Iceland USA 56 Public Gi01058 001813_GCAT 70771 15645 2200 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Archaea Crenarchaeota Thermoproteales Thermoproteaceae Thermoproteus Thermoproteus tenax ARCHAEAL Thermoproteus tenax Kra1 DSM 2078 Genome CRENARCHAEOTA-THERMOPROTEI incomplete Thermophile, Hyperthermophile, Heterotroph, Chemolithoautotroph Biotechnological None Aquatic Germany 54 Public Gi01878 001814_GCAT 2271 639255502 Duisburg-Essen Univ Duisburg-Essen Univ, Epidauros Biotechnologie AG DFG Archaea Crenarchaeota Desulfurococcales Pyrodictiaceae Pyrolobus Pyrolobus fumarii ARCHAEAL Pyrolobus fumarii Genome CRENARCHAEOTA-THERMOPROTEI complete Thermophile, Hyperthermophile, Aerobe, Chemolithoautotroph, Coccus-shaped Biotechnological None Aquatic USA 53 Proprietary Gi00498 001816_GCAT 54252 13457 1850 2000 Diversa, Celera Genomics Diversa Archaea Crenarchaeota Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus metallicus ARCHAEAL Sulfolobus metallicus Genome CRENARCHAEOTA-THERMOPROTEI incomplete Facultative, Thermophile, Chemolithoautotroph, Acidophile, Lithotroph Biotechnological None Aquatic Denmark Public Gi01091 001817_GCAT 47303 Univ of Copenhagen Garrett RA garrett@mermaid.molbio.ku.dk Archaea Euryarchaeota Methanococcales Methanococcaceae Methanococcus Methanococcus voltae ARCHAEAL Methanococcus voltae A3 ATCC BAA-1334 Genome EURYARCHAEOTA-METHANOCOCCI incomplete Methanogen, Carbon cycle, Anaerobe, Motile, Nonsporulating, Coccus-shaped, Lithotroph Energy production, Biotechnological None Aquatic Salt marsh USA 28.6 Public Gi01310 001823_GCAT 456320 20131 2000 ABHB01000000 Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Archaea Crenarchaeota Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus maritimus ARCHAEAL Candidatus Nitrosopumilus maritimus SCM1 Genome CRENARCHAEOTA-CENARCHAEA Draft incomplete Autotroph, Ammonia-oxidizer, Aerobe, Chemolithoautotroph, Nonmotile, Rod-shaped, Mesophile Biotechnological, Ecological None Aquatic Salt-water aquarium USA 34 Public Gi01311 001825_GCAT 436308 19265 640963007 3000 2019 NZ_ABEO00000000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Archaea Crenarchaeota Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus islandicus ARCHAEAL Sulfolobus islandicus Kamchatka #1 Genome CRENARCHAEOTA-THERMOPROTEI incomplete Thermophile, Acidophile, Hyperthermophile, Facultative, Coccus-shaped, Aerobe, Lithotroph Biotechnological None Aquatic 75 - 85 Hot spring on the Kamchatka Penninsula in the Russian Far East USA Public Gi01312 001826_GCAT 427317 18871 3000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Archaea Crenarchaeota Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus islandicus ARCHAEAL Sulfolobus islandicus Kamchatka #2 Genome CRENARCHAEOTA-THERMOPROTEI incomplete Thermophile, Acidophile, Hyperthermophile, Facultative, Coccus-shaped, Aerobe, Lithotroph Biotechnological None Aquatic Hot spring on the Kamchatka Penninsula in the Russian Far East USA Public Gi01313 001827_GCAT 427318 18873 3000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Archaea Crenarchaeota Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus islandicus ARCHAEAL Sulfolobus islandicus Kamchatka #3 Genome CRENARCHAEOTA-THERMOPROTEI incomplete Thermophile, Acidophile, Hyperthermophile, Coccus-shaped, Aerobe, Lithotroph Biotechnological None Aquatic Hot spring on the Kamchatka Penninsula in the Russian Far East USA Public Gi01314 001828_GCAT 426118 18807 3000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Archaea Crenarchaeota Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus islandicus ARCHAEAL Sulfolobus islandicus Kamchatka #4 Genome CRENARCHAEOTA-THERMOPROTEI incomplete incomplete Thermophile, Acidophile, Hyperthermophile, Facultative, Coccus-shaped, Lithotroph Biotechnological None Aquatic 75 - 85 USA Public Gi01315 001829_GCAT 457571 20205 3000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Archaea Crenarchaeota Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus islandicus ARCHAEAL Sulfolobus islandicus Lassen National Park #1 Genome CRENARCHAEOTA-THERMOPROTEI incomplete Thermophile, Acidophile, Hyperthermophile, Facultative, Coccus-shaped, Aerobe, Lithotroph Biotechnological None Aquatic 75 - 85 Lassen National Park in California USA Public Gi01316 001830_GCAT 429572 18987 3000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Archaea Crenarchaeota Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus islandicus ARCHAEAL Sulfolobus islandicus Lassen National Park #2 Draft-Genome CRENARCHAEOTA-THERMOPROTEI incomplete Thermophile, Acidophile, Hyperthermophile, Coccus-shaped, Aerobe, Lithotroph Biotechnological None Aquatic Lassen National Park in California USA Public Gi01317 001831_GCAT 425944 18803 3000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Archaea Crenarchaeota Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus islandicus ARCHAEAL Sulfolobus islandicus Yellowstone #1 Genome CRENARCHAEOTA-THERMOPROTEI incomplete Thermophile, Acidophile, Hyperthermophile, Facultative, Coccus-shaped, Lithotroph Biotechnological None Aquatic, Hot spring 75 - 80 Hot spring in Yellowstone National Park USA Public Gi01318 001832_GCAT 43080 19487 3000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Archaea Crenarchaeota Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus islandicus ARCHAEAL Sulfolobus islandicus Yellowstone #2 Genome CRENARCHAEOTA-THERMOPROTEI incomplete Thermophile, Acidophile, Hyperthermophile, Facultative, Coccus-shaped, Nonsporulating, Nonmotile, Lithotroph Biotechnological None Aquatic, Hot spring 75 - 85 Hot spring at Yellowstone National Park USA Public Gi01319 001833_GCAT 419942 18651 3000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Archaea Crenarchaeota Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus islandicus ARCHAEAL Sulfolobus islandicus HVE10/4 Genome CRENARCHAEOTA-THERMOPROTEI incomplete Thermophile, Acidophile, Hyperthermophile, Facultative, Lithotroph Biotechnological None Aquatic Denmark Public Gi01320 001834_GCAT 43080 3000 Univ of Copenhagen Univ of Copenhagen European Union Garrett RA garrett@mermaid.molbio.ku.dk Bacteria Proteobacteria unclassified unclassified Endoriftia Endoriftia persephone BACTERIAL Endoriftia persephone Hot96_1+Hot96_2 Riftia pachyptila Metagenome ENDOBIOTIC-WORMS Draft incomplete Symbiont, Sulfur oxidizer collected between 9deg N and 13deg N of the East Pacific Rise (EPR) hydrothermal vent system during the HOT-96 cruise USA 57.9 Proprietary Gi02263 Gm00016 001835_GCAT 394104 16744 3203 NZ_AASF00000000 NCBI SymBio Corporation, Scripps Institute of Oceanography, Quorex Inc Molecular Dynamics Feldman RA robert.feldman@am.apbiotech.com Eukaryota unclassified unclassified unclassified Acanthamoeba Acanthamoeba castellanii EUKARYAL Acanthamoeba castellanii EST PROTISTS-ACANTHAMOEBIDAE incomplete Opportunistic Pathogen Medical Encephalitis, Keratitis Aquatic, Soil Canada Public Ge00082 001836_GCAT 5755 12783 13784 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified unclassified unclassified Acanthamoeba Acanthamoeba castellanii EUKARYAL Acanthamoeba castellanii Neff 454 13.75x Genome PROTISTS-ACANTHAMOEBIDAE incomplete Opportunistic Pathogen Medical Encephalitis, Keratitis Aquatic, Soil USA Public Gi00975 001837_GCAT 5755 20303 45000 NCBI, BCM-HGSC BCM-HGSC NIH-NHGRI Weinstock G http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Eukaryota Streptophyta Coniferales Cupressaceae Sequoia Sequoia sempervirens EUKARYAL Sequoia sempervirens Genome-Regions PLANTS-STREPTOPHYTA incomplete incomplete Agricultural USA Public Gi02281 003001_GCAT 28980 Univ of California, Davis Univ of California, Davis Neale DB http://dendrome.ucdavis.edu/NealeLab/overview.html Eukaryota Streptophyta Coniferales Pinaceae Pseudotsuga Pseudotsuga menziesii EUKARYAL Pseudotsuga menziesii Genome-Regions PLANTS-STREPTOPHYTA incomplete incomplete Agricultural USA Public Gi02282 003002_GCAT 3357 Univ of California, Davis Univ of California, Davis Neale DB http://dendrome.ucdavis.edu/NealeLab/overview.html Eukaryota unclassified unclassified unclassified Acanthamoeba Acanthamoeba castellanii EUKARYAL Acanthamoeba castellanii ABI Genome PROTISTS-ACANTHAMOEBIDAE incomplete Opportunistic Pathogen Medical Encephalitis, Keratitis Aquatic, Soil USA Public Gi02268 002985_GCAT 5755 NCBI J Craig Venter Institute Eukaryota unclassified Gonyaulacales Gonyaulacaceae Alexandrium Alexandrium tamarense EUKARYAL Alexandrium tamarense CCMP1598 EST PROTISTS-ALVEOLATA incomplete Photosynthetic USA Public Ge00001 001838_GCAT 2926 9505 Univ of Iowa Univ of Iowa NSF Bhattacharya D dbhattac@blue.weeg.uiowa.edu Eukaryota unclassified Gymnodiniales Gymnodiniaceae Karlodinium Karlodinium micrum EUKARYAL Karlodinium micrum EST PROTISTS-ALVEOLATA incomplete USA Public Ge00224 001839_GCAT 342587 Univ of Connecticut NSF Lin S senjie.lin@uconn.edu Eukaryota unclassified Gymnodiniales Gymnodiniaceae Amphidinium Amphidinium carterae EUKARYAL Amphidinium carterae EST PROTISTS-ALVEOLATA incomplete USA Public Ge00225 001840_GCAT 2961 Univ of Connecticut NSF Lin S senjie.lin@uconn.edu Eukaryota Blastocladiomycota Blastocladiales Blastocladiaceae Allomyces Allomyces macrogynus EUKARYAL Allomyces macrogynus EST FUNGI-CHYTRIDIOMYCOTA incomplete Canada Public Ge00002 001841_GCAT 28583 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified Gymnodiniales Gymnodiniaceae Amphidinium Amphidinium operculatum EUKARYAL Amphidinium operculatum EST PROTISTS-ALVEOLATA incomplete Canada Public Ge00003 001842_GCAT 107036 12781 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota Apicomplexa unclassified Babesiidae Babesia Babesia bovis EUKARYAL Babesia bovis C61411 EST PROTISTS-APICOMPLEXA incomplete United Kingdom Public Ge00004 001843_GCAT 5865 Sanger Institute Sanger Institute, Utrecht Univ WOTRO, NWO Berriman M mb4@sanger.ac.uk Eukaryota Apicomplexa unclassified Babesiidae Babesia Babesia bigemina EUKARYAL Babesia bigemina ABI 8x Genome PROTISTS-APICOMPLEXA complete incomplete Parasite Medical, Animal Pathogen Anemia, Hemoglobinuria virulent Australian isolate United Kingdom Public Gi01373 001844_GCAT 5866 10000 4 0 Sanger Institute Sanger Institute Wellcome Trust Berriman M mb4@sanger.ac.uk Eukaryota Apicomplexa unclassified Babesiidae Babesia Babesia bovis EUKARYAL Babesia bovis Texas Genome PROTISTS-APICOMPLEXA incomplete USA Public Gi00718 001845_GCAT 5865 Washington State Univ Washington State Univ USDA Eukaryota Apicomplexa unclassified Babesiidae Babesia Babesia microti EUKARYAL Babesia microti ABI 12x Genome PROTISTS-APICOMPLEXA incomplete incomplete Rodent Parasite, Pathogen Medical, Human Pathogen Babesiosis Host USA Public Gi02342 003064_GCAT 5868 5200 3 0 Genoscope Genoscope Wincker P pwincker@genoscope.cns.fr Eukaryota unclassified unclassified unclassified Blastocystis Blastocystis hominis EUKARYAL Blastocystis hominis EST PROTISTS-ALVEOLATA incomplete Canada Public Ge00005 001846_GCAT 12968 12785 12761 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified unclassified unclassified Blastocystis Blastocystis hominis EUKARYAL Blastocystis hominis Genome PROTISTS-ALVEOLATA incomplete France Public Gi01236 001847_GCAT 12968 10000 Genoscope Genoscope Wincker P pwincker@genoscope.cns.fr Eukaryota unclassified unclassified unclassified Carpediemonas Carpediemonas membranifera EUKARYAL Carpediemonas membranifera EST PROTISTS-DIPLOMONADIDA incomplete Canada Public Ge00006 001848_GCAT 201153 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified Cercomonadida Cercomonadidae Cercomonas Cercomonas sp. ATCC 50319 EUKARYAL Cercomonas sp. ATCC 50319 ATCC 50319 EST PROTISTS-CERCOZOA incomplete Canada Public Ge00280 001849_GCAT 45113 12789 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified Gymnodiniales Gymnodiniaceae Karenia Karenia brevis EUKARYAL Karenia brevis EST PROTISTS-ALVEOLATA incomplete USA Public Ge00007 001850_GCAT 156230 12967 Joint Genome Institute, Univ of Iowa, NOAA DOE Eukaryota Apicomplexa Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium parvum EUKARYAL Cryptosporidium parvum H- or genotype 1 isolate Genome PROTISTS-APICOMPLEXA incomplete Intracellular, Parasite, Pathogen Medical, Human Pathogen, Animal Pathogen Diarrhea USA Public Gi00181 001851_GCAT 5807 8 0 Virginia Commonwealth Univ Virginia Commonwealth Univ NIH-NIAID Buck GA http://www.vcu.edu/lifesci/education/buck.html Eukaryota Apicomplexa Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium muris EUKARYAL Cryptosporidium muris RN66 Genome PROTISTS-APICOMPLEXA Draft incomplete Intracellular, Parasite, Pathogen Medical, Human Pathogen, Animal Pathogen Diarrhea USA Public Gi02331 003053_GCAT 441375 19553 AAZY00000000 TIGR Eukaryota Apicomplexa Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium parvum EUKARYAL Cryptosporidium parvum Iowa isolate Genome PROTISTS-APICOMPLEXA incomplete Intracellular, Parasite, Pathogen Medical, Human Pathogen, Animal Pathogen Diarrhea USA Public Gi00183 001852_GCAT 414452 144 8 Stanford Univ Univ of Minnesota, Stanford Univ, Virginia Commonwealth Univ NIH-NIAID Nelson RG malaria@itsa.ucsf.edu Eukaryota Apicomplexa Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium parvum EUKARYAL Cryptosporidium parvum Iowa Genome PROTISTS-APICOMPLEXA incomplete Intracellular, Parasite, Pathogen Medical, Human Pathogen, Animal Pathogen Diarrhea United Kingdom Public Gi00182 001853_GCAT 414452 13873 6 0 MRC MRC Cambridge, UK, MWG-Biotech Eukaryota Apicomplexa Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium parvum EUKARYAL Cryptosporidium parvum EST PROTISTS-APICOMPLEXA incomplete Intracellular, Parasite, Pathogen Medical, Human Pathogen, Animal Pathogen Diarrhea USA Public Ge00008 001854_GCAT 5807 6 0 TIGR, UCSF UCSF TIGR tgi@tigr.org Eukaryota unclassified unclassified Cyanophoraceae Cyanophora Cyanophora paradoxa EUKARYAL Cyanophora paradoxa EST PROTISTS-GLAUCOCYSTOPHYCEAE incomplete Photosynthetic Canada Public Ge00009 001855_GCAT 2762 12793 27955 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified unclassified Cyanophoraceae Cyanophora Cyanophora paradoxa EUKARYAL Cyanophora paradoxa Genome PROTISTS-GLAUCOCYSTOPHYCEAE incomplete Photosynthetic USA Public Gi01763 001856_GCAT 2762 Univ of Iowa, SymBio Corporation NSF Bhattacharya D debashi-bhattacharya@uiowa.edu Eukaryota unclassified Suessiales Symbiodiniaceae Symbiodinium Symbiodinium sp. KB8 EUKARYAL Symbiodinium sp. EST PROTISTS-ALVEOLATA incomplete None USA Public Ge00219 001857_GCAT 230985 32000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota unclassified Suessiales Symbiodiniaceae Symbiodinium Symbiodinium sp. EUKARYAL Symbiodinium sp. Reef-building corals Genome PROTISTS-ALVEOLATA incomplete USA Public Gi01477 001858_GCAT 2950 Washington Univ Washington Univ Clifton S sclifton@watson.wustl.edu Eukaryota Apicomplexa Eucoccidiorida Eimeriidae Eimeria Eimeria tenella EUKARYAL Eimeria tenella Houghton EST PROTISTS-APICOMPLEXA incomplete USA Public Ge00010 001859_GCAT 413949 143 34143 Washington Univ, ParaDB, TIGR Washington Univ EST project est@watson.wustl.edu Eukaryota Apicomplexa Eucoccidiorida Eimeriidae Eimeria Eimeria tenella EUKARYAL Eimeria tenella EST PROTISTS-APICOMPLEXA incomplete Brazil Public Ge00271 002883_GCAT 5802 12354 ORESTES Univ of Sao Paulo Gruber A argruber@usp.br Eukaryota Apicomplexa Eucoccidiorida Eimeriidae Eimeria Eimeria maxima EUKARYAL Eimeria maxima EST PROTISTS-APICOMPLEXA incomplete Brazil Public Ge00272 002884_GCAT 5804 15637 ORESTES Univ of Sao Paulo Gruber A argruber@usp.br Eukaryota Apicomplexa Eucoccidiorida Eimeriidae Eimeria Eimeria acervulina EUKARYAL Eimeria acervulina EST PROTISTS-APICOMPLEXA incomplete Brazil Public Ge00273 002885_GCAT 5801 11696 ORESTES Univ of Sao Paulo Gruber A argruber@usp.br Eukaryota Apicomplexa Eucoccidiorida Eimeriidae Eimeria Eimeria tenella EUKARYAL Eimeria tenella Houghton ABI 8x Genome PROTISTS-APICOMPLEXA incomplete Pathogen Medical Coccidiosis United Kingdom 53 Public Gi00218 001860_GCAT 413949 364 60000 14 NCBI, Sanger Institute, BBSRC Sanger Institute, Institute of Animal Health BBSRC Shirley M shirley@bbsrc.ac.uk Eukaryota Apicomplexa Eucoccidiorida Eimeriidae Eimeria Eimeria maxima EUKARYAL Eimeria maxima Genome-Regions PROTISTS-APICOMPLEXA incomplete Pathogen Medical Coccidiosis United Kingdom 53 Public Gi02186 002886_GCAT 5804 Sanger Institute Sanger Institute, Institute of Animal Health BBSRC Eukaryota unclassified Kinetoplastida Trypanosomatidae Crithidia Crithidia deanei EUKARYAL Crithidia deanei ATCC 30255 4x ATCC 30255 Genome PROTISTS-EUGLENOZOA incomplete incomplete Parasite, Insect Parasite Host Zelus leucogrammus United Kingdom Public Gi02532 003258_GCAT 59799 Sanger Institute Sanger Institute Eukaryota unclassified unclassified unclassified Entamoeba Entamoeba dispar EUKARYAL Entamoeba dispar ABI Genome PROTISTS-ENTAMOEBIDAE incomplete complete United Kingdom Public Gi00220 001861_GCAT 46681 12916 200000 Sanger Institute Sanger Institute, LSHTM Wellcome Trust Berriman M mb4@sanger.ac.uk Eukaryota unclassified unclassified unclassified Entamoeba Entamoeba dispar EUKARYAL Entamoeba dispar SAW760 ABI 2x Genome PROTISTS-ENTAMOEBIDAE Draft incomplete USA Public Gi01940 002564_GCAT 370354 12914 AANV02000000 TIGR TIGR NIH TIGR enta@tigr.org Eukaryota unclassified unclassified unclassified Entamoeba Entamoeba invadens EUKARYAL Entamoeba invadens IP-1 ABI 2.8x Natrix cyclopion Genome-Survey PROTISTS-ENTAMOEBIDAE Draft complete Pathogen Medical, Human Pathogen Green Water Snake United Kingdom Public Gi00222 001862_GCAT 370355 12926 AANW02000000 Sanger Institute, TIGR Sanger Institute, LSHTM, TIGR Wellcome Trust Berriman M mb4@sanger.ac.uk Eukaryota unclassified unclassified unclassified Entamoeba Entamoeba moshkovskii EUKARYAL Entamoeba moshkovskii FIC ABI Genome-Survey PROTISTS-ENTAMOEBIDAE incomplete Sewage in Canada United Kingdom Public Gi00223 001863_GCAT 41668 12921 10000 Sanger Institute Sanger Institute, LSHTM Wellcome Trust Berriman M mb4@sanger.ac.uk Eukaryota unclassified unclassified unclassified Entamoeba Entamoeba terrapinae EUKARYAL Entamoeba terrapinae M ABI Chrysemys picta Genome-Survey PROTISTS-ENTAMOEBIDAE incomplete complete Painted Turtle United Kingdom Public Gi00224 001864_GCAT 110771 12918 30000 Sanger Institute Sanger Institute, LSHTM Wellcome Trust Berriman M mb4@sanger.ac.uk Eukaryota Euglenida Euglenales unclassified Euglena Euglena gracilis EUKARYAL Euglena gracilis EST PROTISTS-EUGLENOZOA incomplete Canada Public Ge00011 001865_GCAT 3039 12796 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified unclassified Goniomonadaceae Goniomonas Goniomonas sp. ATCC 50108 EUKARYAL Goniomonas sp. ATCC 50108 ATCC 50108 EST PROTISTS-CRYPTOPHYTA incomplete Canada Public Ge00012 001867_GCAT 234597 12798 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified unclassified unclassified Bigelowiella Bigelowiella natans EUKARYAL Bigelowiella natans CCMP2755 Genome PROTISTS-CERCOZOA incomplete None USA Public Gi01573 001868_GCAT 227086 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota unclassified unclassified Cryptomonadaceae Guillardia Guillardia theta EUKARYAL Guillardia theta Genome PROTISTS-CRYPTOPHYTA incomplete None USA Public Gi01572 001869_GCAT 55529 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota unclassified unclassified Cryptomonadaceae Guillardia Guillardia theta EUKARYAL Guillardia theta EST PROTISTS-CRYPTOPHYTA incomplete Canada Public Ge00013 001870_GCAT 55529 9566 14652 PEP, NCBI Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified Euamoebida Hartmannellidae Hartmannella Hartmannella vermiformis EUKARYAL Hartmannella vermiformis EST PROTISTS-LOBOSEA incomplete Canada Public Ge00014 001871_GCAT 5778 12801 9553 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified Peridiniales Heterocapsaceae Heterocapsa Heterocapsa triquetra EUKARYAL Heterocapsa triquetra EST PROTISTS-ALVEOLATA incomplete Canada Public Ge00016 001873_GCAT 66468 12802 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified Hymenostomatida unclassified Ichthyophthirius Ichthyophthirius multifiliis EUKARYAL Ichthyophthirius multifiliis G5 EST PROTISTS-ALVEOLATA incomplete USA Public Ge00017 001874_GCAT 5932 FUNGEN Cornell Univ NSF Clark T tgc3@cornell.edu Eukaryota unclassified Hymenostomatida unclassified Ichthyophthirius Ichthyophthirius multifiliis EUKARYAL Ichthyophthirius multifiliis NY1 EST PROTISTS-ALVEOLATA incomplete USA Public Ge00018 001875_GCAT 5932 FUNGEN Cornell Univ NSF Clark T tgc3@cornell.edu Eukaryota unclassified Isochrysidales Isochrysidaceae Isochrysis Isochrysis galbana EUKARYAL Isochrysis galbana CCMP 1323 EST PROTISTS-HAPTOPHYCEAE incomplete Canada Public Ge00019 001876_GCAT 37099 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified unclassified Jakobidae Jakoba Jakoba bahamiensis EUKARYAL Jakoba bahamiensis EST PROTISTS-JAKOBIDS incomplete Canada Public Ge00020 001877_GCAT 221721 12806 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified unclassified Jakobidae Jakoba Jakoba libera EUKARYAL Jakoba libera EST PROTISTS-JAKOBIDS incomplete Canada Public Ge00021 001878_GCAT 143017 12804 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified Kinetoplastida Trypanosomatidae Leishmania Leishmania donovani EUKARYAL Leishmania chagasi EST PROTISTS-EUGLENOZOA incomplete Brazil Public Ge00022 001879_GCAT 44271 35000 8500 PROGENE ProGeNe MCT, BNB, CNPq Andrade P bandolim@hotlink.com.br Eukaryota unclassified Kinetoplastida Trypanosomatidae Leishmania Leishmania braziliensis EUKARYAL Leishmania braziliensis MHOM/BR/75M2904 ABI 6x Genome PROTISTS-EUGLENOZOA incomplete incomplete Pathogen Medical, Human Pathogen Leishmaniasis Host United Kingdom Public Gi00914 001880_GCAT 420245 18663 33500 35 0 NCBI, Sanger Institute Sanger Institute, Imperial College Wellcome Trust Berriman M mb4@sanger.ac.uk Eukaryota unclassified Kinetoplastida Trypanosomatidae Leishmania Leishmania mexicana EUKARYAL Leishmania mexicana MHOM/GT/2001/U1103 ABI 5x Genome PROTISTS-EUGLENOZOA incomplete incomplete Pathogen Medical, Human Pathogen Leishmaniasis Host 30 year old male patient with a single ear lesion United Kingdom Public Gi02187 002887_GCAT 5665 33500 Sanger Institute Sanger Institute, Univ of York, Univ of Glasgow Wellcome Trust Berriman M mb4@sanger.ac.uk Eukaryota Apicomplexa Eucoccidiorida Sarcocystidae Neospora Neospora caninum EUKARYAL Neospora caninum ABI Genome PROTISTS-APICOMPLEXA incomplete incomplete United Kingdom Public Gi02188 002888_GCAT 29176 33500 Sanger Institute Sanger Institute, Univ of Liverpool BBSRC Berriman M mb4@sanger.ac.uk Eukaryota unclassified unclassified unclassified Lotharella Lotharella amoeboformis EUKARYAL Lotharella amoeboformis EST PROTISTS-CERCOZOA incomplete Canada Public Ge00023 001887_GCAT 168855 12808 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified unclassified Malawimonadidae Malawimonas Malawimonas californiana EUKARYAL Malawimonas californiana EST PROTISTS-MALAWIMONADIDAE incomplete Canada Public Ge00024 001888_GCAT 221722 12810 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified unclassified Malawimonadidae Malawimonas Malawimonas jakobiformis EUKARYAL Malawimonas jakobiformis EST PROTISTS-MALAWIMONADIDAE incomplete Canada Public Ge00025 001889_GCAT 136089 12814 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified unclassified Mastigamoebidae Mastigamoeba Mastigamoeba balamuthi EUKARYAL Mastigamoeba balamuthi EST PROTISTS-PELOBIONTIDA incomplete Canada Public Ge00026 001890_GCAT 108607 12697 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota Streptophyta Mesostigmatales Mesostigmataceae Mesostigma Mesostigma viride EUKARYAL Mesostigma viride EST PLANTS-STREPTOPHYTA incomplete Canada Public Ge00027 001891_GCAT 41882 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota Chytridiomycota Monoblepharidales Monoblepharidaceae Monoblepharella Monoblepharella sp. M33 EUKARYAL Monoblepharella EST FUNGI-CHYTRIDIOMYCOTA incomplete Canada Public Ge00028 001892_GCAT 79274 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified Schizopyrenida Vahlkampfiidae Naegleria Naegleria gruberi EUKARYAL Naegleria gruberi EST PROTISTS-HETEROLOBOSEA incomplete Canada Public Ge00029 001893_GCAT 5762 12693 5000 NCBI, Dalhousie Univ Dalhousie Univ Eukaryota unclassified Schizopyrenida Vahlkampfiidae Naegleria Naegleria gruberi EUKARYAL Naegleria gruberi NEG-M ABI 8.63x Genome PROTISTS-HETEROLOBOSEA incomplete Soil, Aquatic USA Public Gi00797 001894_GCAT 5762 14010 NCBI, Joint Genome Institute Joint Genome Institute, Univ of California, Berkeley DOE Cande Z http://mcb.berkeley.edu/labs/cande/ Eukaryota Apicomplexa Eucoccidiorida Sarcocystidae Neospora Neospora caninum EUKARYAL Neospora caninum EST PROTISTS-APICOMPLEXA incomplete Pathogen, Parasite, Obligate intracellular Medical, Animal Pathogen Neosporosis USA Public Ge00030 001895_GCAT 29176 12652 TIGR, Washington Univ Washington Univ, TIGR NRI Eukaryota Chlorophyta Pseudoscourfieldiales Pycnococcaceae Nephroselmis Nephroselmis olivacea EUKARYAL Nephroselmis olivacea EST PLANTS-CHLOROPHYTA incomplete Bean-shaped, Motile Aquatic, Fresh water Canada Public Ge00031 001896_GCAT 31312 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota Microsporidia unclassified Nosematidae Brachiola Brachiola algerae EUKARYAL Nosema (Brachiola) algerae Genome FUNGI-MICROSPORIDIA incomplete France Public Gi00976 001897_GCAT 33691 Genoscope Genoscope Eukaryota Microsporidia unclassified unclassified Antonospora Antonospora locustae EUKARYAL Nosema (Antonospora) locustae ABI 3x Genome FUNGI-MICROSPORIDIA incomplete Intracellular, Parasite USA Public Gi00412 001898_GCAT 278021 12903 2900 Marine Biological Laboratory Marine Biological Laboratory NSF Morrison HG morrison@mbl.edu Eukaryota Microsporidia unclassified unclassified Antonospora Antonospora locustae EUKARYAL Nosema locustae. EST FUNGI-MICROSPORIDIA incomplete Canada Public Ge00032 001899_GCAT 278021 2384 NCBI, PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified unclassified Nucleariidae Nuclearia Nuclearia sp. D5 EUKARYAL Nuclearia sp. EST PROTISTS incomplete Canada Public Ge00033 001900_GCAT 154967 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified Ochromonadales Ochromonadaceae Ochromonas Ochromonas danica EUKARYAL Ochromonas danica EST PROTISTS-STRAMENOPILES incomplete Canada Public Ge00034 001901_GCAT 2986 12714 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota Platyhelminthes Acoela Haploposthiidae Waminoa Waminoa sp. ACOELA45-2 EUKARYAL Isodiametra pulchra Genome PLATYHELMINTHES incomplete USA Public Gi01478 001902_GCAT 31265 Washington Univ Washington Univ NIH-NHGRI Clifton S sclifton@watson.wustl.edu Eukaryota unclassified Stichotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum EUKARYAL Oxytricha (Sterkiella) trifallax (histriomuscorum) ABI 4x Genome PROTISTS-ALVEOLATA incomplete USA Public Gi00751 001903_GCAT 94289 12857 NCBI, Washington Univ Washington Univ NIH-NHGRI Mardis E http://genome.wustl.edu/Bio/email_data.cgi?staff=Elaine%20Mardis Eukaryota unclassified Pavlovales Pavlovaceae Pavlova Pavlova lutheri EUKARYAL Pavlova lutheri EST PROTISTS-HAPTOPHYCEAE incomplete Canada Public Ge00035 001905_GCAT 2832 12699 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified Perkinsida Perkinsidae Perkinsus Perkinsus marinus EUKARYAL Perkinsus marinus PmCV4CB5 2B3 D4 ATCC 50983 Genome PROTISTS-ALVEOLATA Draft incomplete Parasite, Pathogen Molluscs Pathogen Dermo Host USA Public Gi00442 001906_GCAT 423536 12737 28000 AAXJ01000000 TIGR TIGR, COMB NSF Gardner MJ gardner@tigr.org Eukaryota Apicomplexa Haemosporida unclassified Plasmodium Plasmodium berghei EUKARYAL Plasmodium berghei ANKA ABI 3x Genome PROTISTS-APICOMPLEXA Draft incomplete Parasite, Pathogen Medical, Animal Pathogen Malaria Host USA Public Gi00462 001907_GCAT 5823 146 14 0 CAAI01000000 NCBI, Univ of Florida, PlasmoDB, TIGR Univ of Florida NIH Dame JB damej@mail.vetmed.ufl.edu Eukaryota Apicomplexa Haemosporida unclassified Plasmodium Plasmodium berghei EUKARYAL Plasmodium berghei ANKA ABI 8x Genome PROTISTS-APICOMPLEXA Draft incomplete Parasite, Pathogen Medical, Animal Pathogen Malaria Host Asynchronous bloodstages of clone 15cy1 of the ANKA strain of P. berghei United Kingdom Public Gi00463 001908_GCAT 5823 146 26000 14 0 CAAI01000000 NCBI, Sanger Institute Sanger Institute, Univ of Oxford Wellcome Trust Berriman M mb4@sanger.ac.uk Eukaryota Apicomplexa Haemosporida unclassified Plasmodium Plasmodium chabaudi EUKARYAL Plasmodium chabaudi AS ABI 8x Genome PROTISTS-APICOMPLEXA Draft incomplete Parasite, Pathogen Medical, Animal Pathogen, Rodent Pathogen Malaria Host United Kingdom Public Gi00464 001909_GCAT 31271 147 30000 14 0 CAAJ01000000, NCBI NCBI, Sanger Institute, Univ of Glasgow, PlasmoDB Sanger Institute, Univ of Glasgow Wellcome Trust Berriman M mb4@sanger.ac.uk Eukaryota Apicomplexa Haemosporida unclassified Plasmodium Plasmodium falciparum EUKARYAL Plasmodium falciparum Ghanaian clinical isolate ABI 8x Genome PROTISTS-APICOMPLEXA incomplete Parasite, Pathogen Medical, Human Pathogen Malaria Host United Kingdom Public Gi00915 001910_GCAT 5833 25000 14 0 Sanger Institute Sanger Institute, Univ of Oxford, Univ of London Wellcome Trust Berriman M mb4@sanger.ac.uk Eukaryota Apicomplexa Haemosporida unclassified Plasmodium Plasmodium falciparum EUKARYAL Plasmodium falciparum IT ABI 1x Genome PROTISTS-APICOMPLEXA incomplete Parasite, Pathogen Medical, Human Pathogen Malaria Host United Kingdom Public Gi00916 001911_GCAT 5833 23000 14 0 Sanger Institute Sanger Institute, Univ of Oxford, BiomalPar European Union Berriman M mb4@sanger.ac.uk Eukaryota Apicomplexa Haemosporida unclassified Plasmodium Plasmodium falciparum EUKARYAL Plasmodium falciparum Dd2 ABI Genome PROTISTS-ALVEOLATA Draft incomplete Pathogen Medical, Human Pathogen Malaria Host USA Public Gi00465 001912_GCAT 57267 17829 14 0 AASM01000000 NCBI, PlasmoDB Broad Institute, SBRI NIH-NIAID Eukaryota Apicomplexa Haemosporida unclassified Plasmodium Plasmodium falciparum EUKARYAL Plasmodium falciparum HB3 ABI Genome PROTISTS-ALVEOLATA Draft incomplete Parasite, Pathogen Medical, Human Pathogen Malaria Host USA Public Gi01212 001913_GCAT 137071 16340 23000 14 0 AANS01000000 NCBI Broad Institute NIH-NIAID MSC msc@broad.mit.edu Eukaryota Apicomplexa Haemosporida unclassified Plasmodium Plasmodium falciparum EUKARYAL Plasmodium falciparum IGH-CR14 ABI Genome PROTISTS-ALVEOLATA incomplete incomplete Parasite, Pathogen Medical, Human Pathogen Malaria Host USA Public Gi02493 003219_GCAT 5833 14 0 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Eukaryota Apicomplexa Haemosporida unclassified Plasmodium Plasmodium falciparum EUKARYAL Plasmodium falciparum JDP8 ABI Genome PROTISTS-ALVEOLATA incomplete incomplete Parasite, Pathogen Medical, Human Pathogen Malaria Host USA Public Gi02494 003220_GCAT 5833 14 0 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Eukaryota Apicomplexa Haemosporida unclassified Plasmodium Plasmodium falciparum EUKARYAL Plasmodium falciparum RAJ116 ABI Genome PROTISTS-ALVEOLATA incomplete incomplete Parasite, Pathogen Medical, Human Pathogen Malaria Host USA Public Gi02495 003221_GCAT 5833 14 0 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Eukaryota Apicomplexa Haemosporida unclassified Plasmodium Plasmodium falciparum EUKARYAL Plasmodium falciparum 87_239 ABI Genome PROTISTS-ALVEOLATA incomplete incomplete Parasite, Pathogen Medical, Human Pathogen Malaria Host USA Public Gi02496 003222_GCAT 5833 14 0 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Eukaryota Apicomplexa Haemosporida unclassified Plasmodium Plasmodium gallinaceum EUKARYAL Plasmodium gallinaceum ABI 3x Genome PROTISTS-ALVEOLATA incomplete Parasite, Pathogen Medical, Animal Pathogen, Avian Pathogen Malaria Host United Kingdom Public Gi00466 001914_GCAT 5849 12649 25000 14 0 NCBI, Sanger Institute, PlasmoDB Sanger Institute, Univ of Glasgow Wellcome Trust Berriman M mb4@sanger.ac.uk unclassified unclassified unclassified unclassified unclassified unclassified EUKARYAL Plasmodium knowlesi H ABI 8x Genome PROTISTS-ALVEOLATA complete incomplete Parasite, Pathogen Medical, Animal Pathogen, Nonhuman-Primates Pathogen Malaria Host United Kingdom Public Gi00467 001915_GCAT 5851 149 25000 14 0 NCBI, Sanger Institute, PlasmoDB Sanger Institute, Univ of Glasgow Wellcome Trust Berriman M mb4@sanger.ac.uk Eukaryota Apicomplexa Haemosporida unclassified Plasmodium Plasmodium reichenowi EUKARYAL Plasmodium reichenowi Dennis Genome PROTISTS-APICOMPLEXA incomplete Parasite, Pathogen Medical, Animal Pathogen, Chimpanzee Pathogen Malaria Host United Kingdom Public Gi00468 001916_GCAT 5854 12645 26000 14 0 NCBI, Sanger Institute, PlasmoDB Sanger Institute, Univ of Glasgow Wellcome Trust Berriman M mb4@sanger.ac.uk Eukaryota Apicomplexa Haemosporida unclassified Plasmodium Plasmodium reichenowi EUKARYAL Plasmodium reichenowi CDC1 Genome PROTISTS-APICOMPLEXA incomplete incomplete Parasite, Pathogen Medical, Animal Pathogen, Chimpanzee Pathogen, FGI Malaria Host USA Public Gi02492 003218_GCAT 5854 14 0 Broad Institute NIH-NIAID Eukaryota Apicomplexa Haemosporida unclassified Plasmodium Plasmodium vivax EUKARYAL Plasmodium vivax Genome-Regions PROTISTS-APICOMPLEXA incomplete complete Parasite, Pathogen Medical, Human Pathogen Malaria Host United Kingdom Public Gi00469 001917_GCAT 5855 9540 30000 14 0 Sanger Institute, Univ of Sao Paulo, Univ Heidelberg, PlasmoDB Sanger Institute Wellcome Trust Berriman M mb4@sanger.ac.uk Eukaryota Apicomplexa Haemosporida unclassified Plasmodium Plasmodium vivax EUKARYAL Plasmodium vivax Salvador I ABI 10x Genome PROTISTS-APICOMPLEXA Draft incomplete Parasite, Pathogen Medical, Human Pathogen Malaria Host naturally-infected honey bee colony at Weslaco, Texas USA Public Gi00470 001918_GCAT 126793 150 30000 14 0 AAKM01000000 NCBI, TIGR, PlasmoDB TIGR, NMRC DOD Eukaryota Chlorophyta Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii EUKARYAL Prototheca wickerhamii EST PLANTS-CHLOROPHYTA incomplete Canada Public Ge00036 001919_GCAT 3111 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified unclassified Jakobidae Reclinomonas Reclinomonas americana EUKARYAL Reclinomonas americana EST PROTISTS-JAKOBIDS incomplete Canada Public Ge00037 001920_GCAT 48483 12702 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified unclassified Retortamonadidae Retortamonas Retortamonas sp. EUKARYAL Retortamonas sp. EST PROTISTS-DIPLOMONADIDA incomplete Canada Public Ge00038 001921_GCAT 194531 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified Mucorales Mucoraceae Rhizopus Rhizopus stolonifer EUKARYAL Rhizopus stolonifer EST FUNGI-ZYGOMYCOTA incomplete Canada Public Ge00039 001922_GCAT 4846 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota Apicomplexa Eucoccidiorida Sarcocystidae Sarcocystis Sarcocystis neurona EUKARYAL Sarcocystis neurona EST PROTISTS-APICOMPLEXA incomplete USA Public Ge00040 001923_GCAT 42890 12629 Washington Univ, TIGR Washington Univ EST project est@watson.wustl.edu Eukaryota Chlorophyta Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus obliquus EUKARYAL Scenedesmus obliquus EST PLANTS-CHLOROPHYTA incomplete Canada Public Ge00041 001924_GCAT 3088 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified unclassified Jakobidae Seculamonas Seculamonas ecuadoriensis EUKARYAL Seculamonas ecuadoriensis EST PROTISTS-JAKOBIDS incomplete Canada Public Ge00042 001925_GCAT 221724 12746 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified unclassified Hexamitidae Spironucleus Spironucleus barkhanus EUKARYAL Spironucleus barkhanus EST PROTISTS-DIPLOMONADIDA incomplete Canada Public Ge00043 001926_GCAT 103874 12691 Dalhousie Univ Dalhousie Univ Eukaryota unclassified unclassified Hexamitidae Spironucleus Spironucleus vortens EUKARYAL Spironucleus vortens Genome PROTISTS-DIPLOMONADIDA incomplete Parasite, Fish parasite Medical, Fish Pathogen Hole-in-the-head disease USA Public Gi00766 001927_GCAT 58336 12928 NCBI Joint Genome Institute, Univ of California, Berkeley DOE Cande Z http://mcb.berkeley.edu/labs/cande/ Eukaryota Chytridiomycota Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus EUKARYAL Spizellomyces punctatus EST FUNGI-CHYTRIDIOMYCOTA incomplete Canada Public Ge00044 001928_GCAT 109760 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified Schizopyrenida Gruberellidae Stachyamoeba Stachyamoeba lipophora EUKARYAL Stachyamoeba lipophora EST PROTISTS-HETEROLOBOSEA incomplete Canada Public Ge00045 001929_GCAT 63594 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena sp. EUKARYAL Tetrahymena sp. Genome PROTISTS-ALVEOLATA incomplete Biotechnological, Protein production None Aquatic USA Public Gi00647 001930_GCAT 31278 220000 5 0 UCSB UCSB NIH-NHGRI Orias E http://www.lifesci.ucsb.edu/mcdb/emeriti/orias/ Eukaryota unclassified Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila EUKARYAL Tetrahymena thermophila EST PROTISTS-ALVEOLATA incomplete Biotechnological, Protein production None Aquatic Canada Public Ge00046 001931_GCAT 5911 16078 56000 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila EUKARYAL Tetrahymena thermophila. EST PROTISTS-ALVEOLATA incomplete Biotechnological, Protein production None Aquatic USA Public Ge00047 001932_GCAT 5911 12563 5 0 TIGR, Univ of Chicago Univ of Chicago Turkewitz A apturkew@midway.uchicago.edu Eukaryota Apicomplexa unclassified Theileriidae Theileria Theileria annulata EUKARYAL Theileria annulata EST PROTISTS-APICOMPLEXA incomplete complete Intracellular, Parasite, Pathogen Medical, Animal Pathogen Tropical theileriosis Host International Public Ge00048 001933_GCAT 5874 14001 10000 4 0 NCBI, Sanger Institute Utrecht Univ WOTRO, NWO Berriman M mb4@sanger.ac.uk Eukaryota Apicomplexa Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii EUKARYAL Toxoplasma gondii EST PROTISTS-ALVEOLATA incomplete USA Public Ge00049 001934_GCAT 5811 Washington Univ, ParaDB, TIGR Washington Univ WUSTL est@watson.wustl.edu Eukaryota Apicomplexa Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii EUKARYAL Toxoplasma gondii RH ABI Genome PROTISTS-APICOMPLEXA Draft incomplete USA Public Gi00662 001935_GCAT 383379 16727 80000 9 0 AAQM01000000 NCBI, TIGR TIGR NIH-NIAID, NIH-NIAID Eukaryota Apicomplexa Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii EUKARYAL Toxoplasma gondii VEG ABI Genome PROTISTS-APICOMPLEXA Draft incomplete USA Public Gi02483 003208_GCAT 432359 19097 9 0 AAYL01000000 TIGR TIGR NIH-NIAID Eukaryota Apicomplexa Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii EUKARYAL Toxoplasma gondii Genome PROTISTS-APICOMPLEXA incomplete United Kingdom Public Gi00663 001936_GCAT 5811 145 80000 9 0 NCBI, Sanger Institute Sanger Institute, Univ of Cambridge Beowulf Genomics Berriman M mb4@sanger.ac.uk Eukaryota unclassified Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis EUKARYAL Trichomonas vaginalis EST PROTISTS-PARABASALIDEA incomplete Pathogen Medical, Human Pathogen Trichomoniasis, Sexually transmitted disease Canada Public Ge00050 001937_GCAT 5722 12681 Dalhousie Univ Dalhousie Univ Eukaryota unclassified Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis EUKARYAL Trichomonas vaginalis EST PROTISTS-PARABASALIDEA incomplete Pathogen Medical, Human Pathogen Trichomoniasis, Sexually transmitted disease China Public Ge00051 001938_GCAT 5722 12683 TIGR Chang Gung Univ TIGR tgi@tigr.org Eukaryota unclassified Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis EUKARYAL Trichomonas vaginalis G3 Genome PROTISTS-PARABASALIDEA Quality Draft incomplete Pathogen, Parasite Medical, Human Pathogen Trichomoniasis, Sexually transmitted disease Host USA 32.8 Public Gi00667 001939_GCAT 412133 16084 180000 NZ_AAHC00000000 NCBI, TIGR TIGR NIH-NIAID Carlton JM jane.carlton@med.nyu.edu Eukaryota unclassified unclassified unclassified Trimastix Trimastix pyriformis ATCC50562 EUKARYAL Trimastix pyriformis EST PROTISTS incomplete Canada Public Ge00052 001940_GCAT 137420 12673 PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota unclassified Kinetoplastida Trypanosomatidae Trypanosoma Trypanosoma brucei EUKARYAL Trypanosoma brucei gambiense ABI 5x Genome PROTISTS-EUGLENOZOA incomplete Pathogen Medical, Human Pathogen, Animal Pathogen Sleeping sickness United Kingdom Public Gi00917 001941_GCAT 31285 25000 11 0 Sanger Institute Sanger Institute, Univ of Bristol Wellcome Trust Berriman M mb4@sanger.ac.uk Eukaryota unclassified Kinetoplastida Trypanosomatidae Trypanosoma Trypanosoma carassii EUKARYAL Trypanosoma carassii EST PROTISTS-EUGLENOZOA incomplete Argentina Public Ge00053 001942_GCAT 38249 IIB-UNSAM IIB-UNSAM NIH-NIAID Sanchez DO dsanchez@iib.unsam.edu.ar Eukaryota unclassified Kinetoplastida Trypanosomatidae Trypanosoma Trypanosoma congolense EUKARYAL Trypanosoma congolense IL3000 ABI 1x Genome PROTISTS-EUGLENOZOA incomplete United Kingdom Public Gi00670 001943_GCAT 5692 12958 Sanger Institute Sanger Institute, Glasgow Univ, Instituto Oswaldo Cruz, International Livestock Institute, Univ of Cambridge Wellcome Trust Berriman M mb4@sanger.ac.uk Eukaryota unclassified Kinetoplastida Trypanosomatidae Trypanosoma Trypanosoma rangeli EUKARYAL Trypanosoma rangeli SC-58, Choachi EST PROTISTS-EUGLENOZOA incomplete Parasite, Pathogen Medical, Animal Pathogen Brazil Public Ge00207 001944_GCAT 429131 18959 BiowebDB Univ Federal de Santa Catarina CNPq Grisard E grisard@ccb.ufsc.br Eukaryota unclassified Kinetoplastida Trypanosomatidae Trypanosoma Trypanosoma vivax EUKARYAL Trypanosoma vivax Y486 ABI 5x Genome PROTISTS-EUGLENOZOA incomplete Parasite, Pathogen Medical, Animal Pathogen United Kingdom Public Gi00672 001945_GCAT 5699 12957 NCBI, Sanger Institute Sanger Institute, Glasgow Univ, Instituto Oswaldo Cruz, International Livestock Institute, Univ of Cambridge Wellcome Trust Berriman M mb4@sanger.ac.uk Eukaryota Microsporidia unclassified Enterocytozoonidae Enterocytozoon Enterocytozoon bieneusi EUKARYAL Enterocytozoon bieneusi Genome FUNGI-MICROSPORIDIA incomplete USA Public Gi00230 001946_GCAT 31281 Tufts Univ NIH-NIAID Tzipori SV saul.tzipori@tufts.edu Eukaryota Basidiomycota Sporidiobolales unclassified Sporobolomyces Sporobolomyces roseus EUKARYAL Sporobolomyces roseus IAM 13481 Genome FUNGI-BASIDIOMYCOTA incomplete International Public Gi00767 001948_GCAT 40563 10000 Joint Genome Institute Joint Genome Institute, Trinity College, Dublin DOE Wolfe K http://www.tcd.ie/Genetics/staff/Ken_Wolfe.html Eukaryota Microsporidia unclassified Spraguidae Spraguea Spraguea lophii EUKARYAL Spraguea lophii Genome FUNGI-MICROSPORIDIA incomplete USA Public Gi00589 001949_GCAT 51541 6200 MBL Marine Biological Laboratory Sogin ML Sogin@mbl.edu Eukaryota Ascomycota Pleosporales Phaeosphaeriaceae Phaeosphaeria Phaeosphaeria nodorum EUKARYAL Stagonospora (Phaeosphaeria) nodorum SN15 ABI Genome FUNGI-ASCOMYCOTA Draft incomplete Pathogen Agricultural, Plant Pathogen, Wheat Pathogen, FGI Leaf and glume blotch USA Public Gi01060 001950_GCAT 321614 13754 37100 AAGI01000000 Broad Institute Broad Institute GRDC Oliver R roliver@murdoch.edu.au Eukaryota Ascomycota Pleosporales Pleosporaceae Alternaria Alternaria brassicicola EUKARYAL Alternaria brassicicola EGS 42-002, ATCC 96866 6.4x ATCC 96866 Genome FUNGI-ASCOMYCOTA incomplete USA Public Gi01061 001951_GCAT 29001 Washington Univ, Virginia Polytechnic Institute and State Univ Virginia Polytechnic Institute, Washington Univ USDA/ARS, USDA/ARS Lawrence, C https://www.vbi.vt.edu/article/articleview/304 Eukaryota Ascomycota Onygenales Ascosphaeraceae Ascosphaera Ascosphaera apis EUKARYAL Ascosphaera apis USDA-ARSEF 7405 ABI 4x Genome FUNGI-ASCOMYCOTA Draft incomplete USA Public Gi01092 001952_GCAT 392613 17285 24000 AARE00000000 NCBI, BCM-HGSC BCM-HGSC USDA/ARS Eukaryota Ascomycota Eurotiales Trichocomaceae Aspergillus Aspergillus flavus EUKARYAL Aspergillus flavus EST FUNGI-ASCOMYCOTA incomplete Pathogen, Aflatoxin producer Medical, Human Pathogen Aspergillosis USA Public Ge00054 001953_GCAT 5059 13175 1400 8 0 Univ of Oklahoma Univ of Oklahoma NSF/EPSCoR Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Eukaryota Ascomycota Eurotiales Trichocomaceae Aspergillus Aspergillus flavus EUKARYAL Aspergillus flavus NRRL3357 ABI 5x NRRL3357 Genome FUNGI-ASCOMYCOTA Draft incomplete Pathogen, Aflatoxin producer Medical, Human Pathogen, Plant Pathogen, Agricultural Aspergillosis USA Public Gi01283 001954_GCAT 332952 13284 36000 8 0 AAIH00000000 North Carolina State Univ, TIGR USDA Eukaryota Ascomycota Eurotiales Trichocomaceae Aspergillus Aspergillus flavus EUKARYAL Aspergillus flavus NRRL3357 NRRL3357 EST FUNGI-ASCOMYCOTA incomplete Pathogen, Aflatoxin producer Medical, Human Pathogen, Plant Pathogen, Agricultural Aspergillosis USA Public Ge00261 002862_GCAT 332952 13285 26110 USDA/ARS, TIGR Eukaryota Ascomycota Eurotiales Trichocomaceae Aspergillus Aspergillus fumigatus EUKARYAL Aspergillus fumigatus CEA10 or CBS144 ABI 10x Genome FUNGI-ASCOMYCOTA Draft incomplete Pathogen Medical, Human Pathogen, Animal Pathogen Aspergillosis USA Public Gi00037 001955_GCAT 5085 18733 30000 8 0 ABDB00000000 TIGR, Celera Genomics, Elitra Eukaryota Ascomycota Eurotiales Trichocomaceae Emericella Emericella nidulans EUKARYAL Aspergillus (Emericella) nidulans Genome FUNGI-ASCOMYCOTA incomplete Pathogen Medical, Human Pathogen Aspergillosis USA Proprietary Gi00039 001956_GCAT 162425 31000 8 0 Cereon Cereon Genomics Eukaryota Ascomycota Eurotiales Trichocomaceae Emericella Emericella nidulans EUKARYAL Aspergillus nidulans FGSC A26(biA1) EST FUNGI-ASCOMYCOTA incomplete Pathogen Medical, Human Pathogen Aspergillosis USA Public Ge00055 001957_GCAT 227321 362 14900 8 0 NCBI, Univ of Oklahoma, TIGR Univ of Oklahoma Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Eukaryota Ascomycota Eurotiales Trichocomaceae Aspergillus Aspergillus niger EUKARYAL Aspergillus niger NRRL3, DSM2466 DSM2466 Genome FUNGI-ASCOMYCOTA incomplete Filament-shaped Biotechnological, Fermentation None USA Proprietary Gi00042 001958_GCAT 5061 Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Eukaryota Ascomycota Eurotiales Trichocomaceae Aspergillus Aspergillus niger EUKARYAL Aspergillus niger ATCC 1015 ABI 8.9x Genome FUNGI-ASCOMYCOTA incomplete Filament-shaped Biotechnological, Fermentation None USA Public Gi00977 001959_GCAT 380704 15785 32000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Ascomycota Eurotiales Trichocomaceae Aspergillus Aspergillus niger EUKARYAL Aspergillus niger A733 (Wild-type A) EST FUNGI-ASCOMYCOTA incomplete Filament-shaped Biotechnological, Fermentation None USA Public Ge00245 002846_GCAT 5061 Fungal Genomics Concordia Univ NSERC Eukaryota Ascomycota unclassified Amorphothecaceae Amorphotheca Amorphotheca resinae EUKARYAL Amorphotheca resinae DAOM194228 DAOM194228 EST FUNGI-ASCOMYCOTA incomplete Biotechnological, Environmental None Soil 20 Canada Public Ge00246 002847_GCAT 5101 Fungal Genomics Concordia Univ Genome Canada Eukaryota Ascomycota unclassified Dothioraceae Aureobasidium Aureobasidium pullulans EUKARYAL Aureobasidium pullulans ATCC 62921 ATCC 62921, NRRL Y-2311-1 EST FUNGI-ASCOMYCOTA incomplete Pathogen Agricultural, Plant Pathogen Stigmatomycosis Soil 10 - 35 Canada Public Ge00247 002848_GCAT 5580 Fungal Genomics Concordia Univ Genome Canada Eukaryota Basidiomycota Tremellales unclassified Cryptococcus Cryptococcus laurentii EUKARYAL Cryptococcus laurentii UAMH 633 EST FUNGI-BASIDIOMYCOTA incomplete Canada Public Ge00248 002849_GCAT 5418 Fungal Genomics Concordia Univ Genome Canada Eukaryota unclassified Mucorales Cunninghamellaceae Cunninghamella Cunninghamella elegans EUKARYAL Cunninghamella elegans ATCC 36112 ATCC 36112 EST FUNGI incomplete Sygomycosis Soil Canada Public Ge00249 002850_GCAT 4853 Fungal Genomics Concordia Univ Genome Canada Eukaryota Ascomycota Onygenales unclassified Geomyces Geomyces pannorum EUKARYAL Geomyces pannorum UAMH 1568 UAMH 1568 EST FUNGI-ASCOMYCOTA incomplete Canada Public Ge00250 002851_GCAT 79858 Fungal Genomics Concordia Univ Genome Canada Eukaryota Basidiomycota Gloeophyllales Gloeophyllaceae Gloeophyllum Gloeophyllum trabeum EUKARYAL Gloeophyllum trabeum ATCC 11539 ATCC 11539 EST FUNGI-BASIDIOMYCOTA incomplete Lignin degrader, Cellulose degrader Wood Canada Public Ge00251 002852_GCAT 104355 Fungal Genomics Concordia Univ Genome Canada Eukaryota Basidiomycota Agaricales Tricholomataceae Lentinula Lentinula edodes EUKARYAL Lentinula edodes ATCC 48564 ATCC 48564 EST FUNGI-BASIDIOMYCOTA incomplete Food industry Canada Public Ge00252 002853_GCAT 5353 Fungal Genomics Concordia Univ Genome Canada Eukaryota Basidiomycota Leucosporidiales unclassified Leucosporidium Leucosporidium scottii EUKARYAL Leucosporidium scottii ATCC 90774 ATCC 90774 EST FUNGI-BASIDIOMYCOTA incomplete Psychrotolerant Soil, Snow, Aquatic, Antarctica 15 - 30 Canada Public Ge00253 002854_GCAT 5278 Fungal Genomics Concordia Univ Genome Canada Eukaryota Ascomycota Sordariales Chaetomiaceae Corynascus Corynascus heterothallicus EUKARYAL Myceliophthora thermophila ATCC 42464 ATCC 42464 EST FUNGI-ASCOMYCOTA incomplete Thermophile Soil 25 - 55 Canada Public Ge00254 002855_GCAT 78579 Fungal Genomics Concordia Univ Genome Canada Eukaryota Ascomycota Ophiostomatales Ophiostomataceae Ophiostoma Ophiostoma piliferum EUKARYAL Ophiostoma piliferum FCC 55A FCC 55A EST FUNGI-ASCOMYCOTA incomplete Canada Public Ge00255 002856_GCAT 38032 Fungal Genomics Concordia Univ Genome Canada Eukaryota Basidiomycota Corticiales Corticiaceae Phanerochaete Phanerochaete chrysosporium EUKARYAL Phanerochaete chrysosporium RP78 EST FUNGI-BASIDIOMYCOTA incomplete Canada Public Ge00256 002857_GCAT 5306 Fungal Genomics Concordia Univ Genome Canada Eukaryota Ascomycota unclassified unclassified Thermomyces Thermomyces lanuginosus EUKARYAL Thermomyces lanuginosus ATCC 200065 ATCC 200065 EST FUNGI-ASCOMYCOTA incomplete Thermophile Soil 30 - 55 Canada Public Ge00257 002858_GCAT 5541 Fungal Genomics Concordia Univ Genome Canada Eukaryota Basidiomycota Polyporales Coriolaceae Trametes Trametes versicolor EUKARYAL Trametes versicolor 52P, ATCC 20869 ATCC 20869 EST FUNGI-BASIDIOMYCOTA incomplete Cellulose degrader, Lignin degrader Soil Canada Public Ge00258 002859_GCAT 5325 Fungal Genomics Concordia Univ Genome Canada Eukaryota Ascomycota Eurotiales Trichocomaceae Aspergillus Aspergillus parasiticus EUKARYAL Aspergillus parasiticus Genome FUNGI-ASCOMYCOTA incomplete Aflatoxin producer Agricultural USA Public Gi00568 001960_GCAT 5067 129 NCBI, Univ of Oklahoma Univ of Oklahoma Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Eukaryota Ascomycota Eurotiales Trichocomaceae Aspergillus Aspergillus terreus EUKARYAL Aspergillus terreus ATCC 20542 ABI Genome FUNGI-ASCOMYCOTA Draft incomplete Statins producer Medical, Biotechnological, Pharmaceutical USA Public Gi00569 001961_GCAT 285217 187 35000 AABT01000000 NCBI Microbia Eukaryota Ascomycota Eurotiales Trichocomaceae Aspergillus Aspergillus terreus EUKARYAL Aspergillus terreus NIH 2624 ABI 11x Genome FUNGI-ASCOMYCOTA Draft incomplete Statins producer Medical, Biotechnological, Pharmaceutical, FGI USA Public Gi01062 001962_GCAT 341663 15631 640281008 35000 10556 AABT01000000 NCBI, Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Eukaryota Ascomycota Eurotiales Trichocomaceae Aspergillus Aspergillus clavatus EUKARYAL Aspergillus clavatus NRRL1 ABI 11.4x Genome FUNGI-ASCOMYCOTA Quality Draft Pathogen, Allergenic Medical, Human Pathogen, Animal Pathogen Soil, Animal manure USA 49.2 Public Gi01063 001963_GCAT 344612 15664 27850 NZ_AAKD00000000 NCBI, TIGR TIGR NIH-NIAID Eukaryota Ascomycota Eurotiales Trichocomaceae Neosartorya Neosartorya fischeri EUKARYAL Neosartorya fischeri NRRL 181 ABI Genome FUNGI-ASCOMYCOTA Draft incomplete Pathogen Medical, Human Pathogen Keratitis, Pulmonary aspergillosis Soil USA 49 Public Gi01064 001964_GCAT 331117 15672 32542 NZ_AAKE00000000 NCBI, TIGR TIGR NIH-NIAID Eukaryota Chytridiomycota Chytridiales unclassified Batrachochytrium Batrachochytrium dendrobatidis EUKARYAL Batrachochytrium dendrobatidis JEL423 ABI 7.4x Genome FUNGI-CHYTRIDIOMYCOTA incomplete Non-filamentous, Pathogen, Chytrid Medical, Animal Pathogen, Frog Pathogen, FGI Chytridiomycosis Aquatic USA 43 Public Gi00978 001965_GCAT 403673 13653 20000 20 0 AATT00000000 NCBI, Broad Institute Broad Institute NIH-NHGRI Eukaryota Chytridiomycota Chytridiales unclassified Batrachochytrium Batrachochytrium dendrobatidis EUKARYAL Batrachochytrium dendrobatidis JAM81 Genome FUNGI-CHYTRIDIOMYCOTA incomplete Non-filamentous, Pathogen, Chytrid Medical, Animal Pathogen, Frog Pathogen Chytridiomycosis Aquatic USA 43 Public Gi01093 001966_GCAT 109871 40000 20 0 Joint Genome Institute, Univ of California, Berkeley DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Ascomycota Hypocreales Cordycipitaceae Cordyceps Cordyceps bassiana EUKARYAL Beauveria (Cordyceps) bassiana EST FUNGI-ASCOMYCOTA incomplete USA Public Ge00222 001967_GCAT 176275 Univ of Florida NSF Keyhani NO keyhani@ufl.edu Eukaryota Ascomycota unclassified Erysiphaceae Blumeria Blumeria graminis EUKARYAL Blumeria graminis EST FUNGI-ASCOMYCOTA incomplete Pathogen Agricultural, Plant Pathogen International Public Ge00056 001968_GCAT 34373 Carlsberg Research Center Carlsberg Research Center, ACNFP Eukaryota Ascomycota Helotiales Sclerotiniaceae Botryotinia Botryotinia fuckeliana EUKARYAL Botryotinia fuckeliana EST FUNGI-ASCOMYCOTA incomplete Pathogen, Filament-shaped Agricultural, Plant Pathogen Gray mold rot, Botrytis blight New Zealand Proprietary Ge00058 001970_GCAT 40559 Genesis Genesis Eukaryota Ascomycota Helotiales Sclerotiniaceae Botryotinia Botryotinia fuckeliana EUKARYAL Botryotinia (Botrytis) fuckeliana (cinerea) B05.10 ABI 5.4x Genome FUNGI-ASCOMYCOTA Draft incomplete Pathogen, Filament-shaped Agricultural, Plant Pathogen, FGI Gray mold rot, Botrytis blight USA Public Gi00781 001971_GCAT 332648 15632 38000 AAID00000000 Broad Institute Syngenta AG, Broad Institute Eukaryota Blastocladiomycota Blastocladiales Blastocladiaceae Allomyces Allomyces macrogynus EUKARYAL Allomyces macrogynus ABI 6x Genome FUNGI-BLASTOCLADIOMYCOTA incomplete incomplete FGI USA Public Gi02368 003102_GCAT 28583 20563 30000 Broad Institute NIH-NHGRI Eukaryota unclassified Mortierellales Mortierellaceae Mortierella Mortierella verticillata EUKARYAL Mortierella verticillata ABI 2x Genome FUNGI incomplete incomplete FGI USA Public Gi02369 003103_GCAT 78898 20603 Broad Institute NIH-NHGRI Eukaryota Chytridiomycota Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus EUKARYAL Spizellomyces punctatus ABI 2x Genome FUNGI-CHYTRIDIOMYCOTA incomplete incomplete FGI USA Public Gi02370 003103_GCAT 109760 20573 Broad Institute NIH-NHGRI Eukaryota Basidiomycota Pucciniales Melampsoraceae Melampsora Melampsora laricis-populina EUKARYAL Melampsora laricis-populina 98AG31 Genome FUNGI-BASIDIOMYCOTA incomplete incomplete USA Public Gi02371 003105_GCAT 203908 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Ascomycota Onygenales Arthrodermataceae Trichophyton Trichophyton equinum EUKARYAL Trichophyton equinum CBS 109036 ABI 5x Genome FUNGI-ASCOMYCOTA incomplete incomplete Dermatophyte Medical, Horse Pathogen, FGI Ringworm USA Public Gi02372 003106_GCAT 63418 20577 22000 Broad Institute NIH-NHGRI Eukaryota Ascomycota Onygenales Arthrodermataceae Trichophyton Trichophyton rubrum EUKARYAL Trichophyton rubrum CBS 118892 ABI 8x Genome FUNGI-ASCOMYCOTA incomplete incomplete Dermatophyte Medical, Human Pathogen, FGI Skin infection USA Public Gi02373 003107_GCAT 5551 20589 22000 Broad Institute NIH-NHGRI Eukaryota Ascomycota Onygenales Arthrodermataceae Trichophyton Trichophyton tonsurans EUKARYAL Trichophyton tonsurans CBS 112817 ABI 5x Genome FUNGI-ASCOMYCOTA incomplete incomplete Dermatophyte Medical, Human Pathogen, FGI Scalp infection USA Public Gi02374 003108_GCAT 34387 20581 22000 Broad Institute NIH-NHGRI Eukaryota Ascomycota Onygenales Arthrodermataceae Microsporum Microsporum canis EUKARYAL Microsporum canis CBS 113480 ABI 8x Genome FUNGI-ASCOMYCOTA incomplete incomplete Dermatophyte medical, Human Pathogen, Animal Pathogen, FGI Tinea capitis, Ringworm USA Public Gi02375 003109_GCAT 82078 20567 22000 Broad Institute NIH-NHGRI Eukaryota Ascomycota Onygenales Arthrodermataceae Arthroderma Arthroderma gypseum EUKARYAL Microsporum (Arthroderma) gypseum CBS 118893 ABI 8x Genome FUNGI-ASCOMYCOTA incomplete incomplete Dermatophyte Medical, Human Pathogen, FGI Skin infection Soil USA Public Gi02376 003110_GCAT 63402 20599 22000 Broad Institute NIH-NHGRI Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae 273614X ABI 1.3x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Fecal sample from Newcastle UK United Kingdom Public Gi02377 003111_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae 322134S ABI 1.4x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Throat-sputum isolate from Newcastle, UK United Kingdom Public Gi02378 003112_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae 378604X ABI 1.4x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Sputum isolate from Newcastel UK United Kingdom Public Gi02379 003113_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae BC187 ABI 0.7x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Barrel fermentation from Napa Valley USA United Kingdom Public Gi02380 003114_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae DBVPG1106 ABI 1.1x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Grapes from Australia United Kingdom Public Gi02381 003115_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae DBVPG1373 ABI 1.4x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Soil Soil from the Netherlands United Kingdom Public Gi02382 003116_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae DBVPG1788 ABI 1.3x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Soil Soil from Finland United Kingdom Public Gi02383 003117_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae DBVPG1853 ABI 1x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Bili wine from West Africa United Kingdom Public Gi02384 003118_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae DBVPG6765 ABI 3.5x Genome FUNGI-ASCOMYCOTA incomplete SGRP United Kingdom Public Gi02385 003119_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae K11 ABI 1.3x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Shochu Sake strain United Kingdom Public Gi02386 003120_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae L-1374 ABI 1.1x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP From wine United Kingdom Public Gi02387 003121_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae L-1528 ABI 1.2x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP From Wine United Kingdom Public Gi02388 003122_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae NCYC110 ABI 1.3x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Ginger beer from Z. officinale United Kingdom Public Gi02389 003123_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae NCYC361 ABI 0.9x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Beer spoilage strain from wort United Kingdom Public Gi02390 003124_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae S288c ABI, 454 1.3x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Rotting fig from California USA United Kingdom Public Gi02391 003125_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae SK1 ABI, 454 3.8x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Soil Soil United Kingdom Public Gi02392 003125_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae UWOPS03-461.4 ABI 1.4x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Nectar, Bertam palm United Kingdom Public Gi02393 003127_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae UWOPS05-217.3 ABI 1.4x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Nectar, Bertam palm United Kingdom Public Gi02394 003128_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae UWOPS05-227.2 ABI 1.4x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Trigona, Bertam palm United Kingdom Public Gi02395 003129_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae UWOPS83-787.3 ABI 1.4x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Fruit, Opuntia stricta United Kingdom Public Gi02396 003130_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae UWOPS87-2421 ABI 1.4x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Cladode, Opuntia megacantha United Kingdom Public Gi02397 003131_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae W303 ABI, 454 3.7x Genome FUNGI-ASCOMYCOTA incomplete SGRP United Kingdom Public Gi02398 003132_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae Y12 (NRRL-Y12663) ABI 1.3x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Palm wine strain United Kingdom Public Gi02399 003133_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae Y55 ABI, 454 4.1x Genome FUNGI-ASCOMYCOTA incomplete SGRP Lab strain United Kingdom Public Gi02400 003134_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae Y9 (NRRL-Y5997) ABI 1.2x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Ragi from Japan United Kingdom Public Gi02401 003135_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae YGPM ABI 1.6x Genome FUNGI-ASCOMYCOTA incomplete SGRP Rotting fig United Kingdom Public Gi02402 003136_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae YIIc17-E5 ABI 1.5x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Wine from Sauternes, France United Kingdom Public Gi02403 003137_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae YJM975 ABI 1.5x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Vaginal isolate from Bergamo Italy United Kingdom Public Gi02404 003138_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae YJM978 ABI 1.5x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Vaginal isolate from Bergamo Italy United Kingdom Public Gi02405 003139_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae YJM981 ABI 1.3x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Vaginal isolate from Bergamo Italy United Kingdom Public Gi02406 003140_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae YPS128 ABI 1.4x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from Pennsylvania USA United Kingdom Public Gi02407 003141_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae YPS606 ABI 1.7x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from Pennsylvania USA United Kingdom Public Gi02408 003142_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae YS2 ABI 1.0x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Baker strain from Australia United Kingdom Public Gi02409 003143_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae YS4 ABI 1.5x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Baker strain from the Netherlands United Kingdom Public Gi02410 003144_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae YS9 ABI 1.5x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Baker strain from Singapore United Kingdom Public Gi02411 003145_GCAT 4932 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus A12 ABI 1.4x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from Canada United Kingdom Public Gi02412 003146_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus A4 ABI 1.4x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from Canada United Kingdom Public Gi02413 003147_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus CBS432 ABI 6.3x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from Russia United Kingdom Public Gi02414 003148_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus CBS5829 ABI 3x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Soil Soil from Denmark United Kingdom Public Gi02415 003149_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus DBVPG4650 ABI 1.6x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Guano from Italy United Kingdom Public Gi02416 003150_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus DBVPG6304 ABI 1.7x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Drosophila from California USA United Kingdom Public Gi02417 003151_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus IFO1804 ABI 1.2x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from Japan United Kingdom Public Gi02418 003152_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus KPN3828 ABI 1.2x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from Siberia United Kingdom Public Gi02419 003153_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus KPN3829 ABI 1.1x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from Siberia United Kingdom Public Gi02420 003154_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus N-17 ABI 3.2x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from Russia United Kingdom Public Gi02421 003155_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus N-43 ABI 1.7x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from far eastern Russia United Kingdom Public Gi02422 003156_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus N-44 ABI 1.4x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from far eastern Russia United Kingdom Public Gi02423 003157_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus N-45 ABI 3.7x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from far eastern Russia United Kingdom Public Gi02424 003158_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Q31.4 454 Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from London UK United Kingdom Public Gi02425 003159_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Q32.3 ABI 1.3x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP United Kingdom Public Gi02426 003160_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Q59.1 ABI 1.4x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak in London UK United Kingdom Public Gi02427 003161_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Q62.5 ABI 1.4x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from London UK United Kingdom Public Gi02428 003162_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Q69.8 454 Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from London UK United Kingdom Public Gi02429 003163_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Q74.4 454 Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from London UK United Kingdom Public Gi02430 003164_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Q89.8 ABI 0.9x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from London UK United Kingdom Public Gi02431 003165_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Q95.3 ABI 1.5x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from London UK United Kingdom Public Gi02432 003166_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus S36.7 ABI 0.7x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from London UK United Kingdom Public Gi02433 003167_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus T21.4 ABI 1.5x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from London UK United Kingdom Public Gi02434 003168_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus UFRJ50791 ABI 1.0x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Drosophila from Catalao Point Brazil United Kingdom Public Gi02435 003169_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus UFRJ50816 ABI 1.4x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Drosophila from Tijuca Forest Brazil United Kingdom Public Gi02436 003170_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus UWOPS91-917.1 ABI 3.0x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Flux, Myoporum from Hawaii United Kingdom Public Gi02437 003171_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus W7 454 Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from London UK United Kingdom Public Gi02438 003172_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Y6.5 ABI 1.1x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from London UK United Kingdom Public Gi02439 003173_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Y7 ABI 1.2x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from London UK United Kingdom Public Gi02440 003174_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Y8.1 454 Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from London UK United Kingdom Public Gi02441 003175_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Y8.5 454 Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from London UK United Kingdom Public Gi02442 003176_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Y9.6 454 Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from London UK United Kingdom Public Gi02443 003177_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus YPS138 ABI 1.4x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from Pennsylvania USA United Kingdom Public Gi02444 003178_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Z1 ABI Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from London UK United Kingdom Public Gi02445 003179_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Z1.1 ABI 1.0x Genome FUNGI-ASCOMYCOTA incomplete incomplete SGRP Oak from London UK United Kingdom Public Gi02446 003180_GCAT 27291 Sanger Institute Sanger Institute Carter D dmc@sanger.ac.uk Eukaryota Ascomycota Helotiales Sclerotiniaceae Botryotinia Botryotinia fuckeliana EUKARYAL Botryotinia (Botrytis) fuckeliana (cinerea) ABI 10x Genome FUNGI-ASCOMYCOTA incomplete Pathogen, Filament-shaped Agricultural, Plant Pathogen Gray mold rot, Botrytis blight France Public Gi01237 001972_GCAT 40559 16118 30000 Genoscope Genoscope, Bayer CropScience Wincker P pwincker@genoscope.cns.fr Eukaryota Microsporidia unclassified Nosematidae Brachiola Brachiola algerae EUKARYAL Brachiola algerae Genome FUNGI-MICROSPORIDIA incomplete France Public Gi01065 001973_GCAT 33691 10000 Genoscope Genoscope Eukaryota Ascomycota Saccharomycetales unclassified Candida Candida albicans EUKARYAL Candida albicans 1161 Genome FUNGI-ASCOMYCOTA incomplete Pathogen Medical, Human Pathogen Oral infection, Vaginal infection United Kingdom Public Gi00125 001974_GCAT 5476 10771 15000 8 0 Sanger Institute Sanger Institute, Univ of Aberdeen Beowulf Genomics Barrell B barrell@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales unclassified Candida Candida albicans EUKARYAL Candida albicans WO-1 ABI 10x Genome FUNGI-ASCOMYCOTA Quality-Draft incomplete Pathogen Medical, Human Pathogen, FGI Oral infection, Vaginal infection USA Public Gi00124 001976_GCAT 294748 16373 30000 6160 8 0 AAFO00000000 Broad Institute Broad Institute NIH-NHGRI Eukaryota Ascomycota Saccharomycetales unclassified Candida Candida dubliniensis EUKARYAL Candida dubliniensis CD36 ABI 8x Genome FUNGI-ASCOMYCOTA incomplete Pathogen Medical, Human Pathogen Oral candidosis United Kingdom Public Gi00355 001977_GCAT 42374 16000 Sanger Institute Sanger Institute, Univ of Aberdeen, Trinity College, Dublin Wellcome Trust Berriman M mb4@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales unclassified Candida Candida parapsilosis EUKARYAL Candida parapsilosis 317 ABI 9.2x Genome FUNGI-ASCOMYCOTA complete incomplete Pathogen Medical, Human Pathogen Nosocomial infection Hands of a hospital worker, who was the source for an outbreak of infection in a Mississippi community hospital in 2001 United Kingdom Public Gi01372 001978_GCAT 5480 13000 7 0 Sanger Institute Sanger Institute Wellcome Trust Berriman M mb4@sanger.ac.uk Eukaryota Ascomycota Saccharomycetales Metschnikowiaceae Clavispora Clavispora lusitaniae EUKARYAL Candida (Clavispora) lusitaniae ATCC 42720 ABI 9x ATCC 42720 Genome FUNGI-ASCOMYCOTA Draft incomplete Pathogen Medical, Human Pathogen, FGI Candidiasis, Candidemia USA Public Gi00129 001979_GCAT 306902 12753 16000 AAFT00000000 NHGRI, Broad Institute Broad Institute NIH-NHGRI Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Pichia Pichia guilliermondii EUKARYAL Candida (Pichia) guilliermondii ATCC 6260 ABI 12x ATCC 6260 Genome FUNGI-ASCOMYCOTA Draft incomplete Non-Pathogen FGI None USA Public Gi00130 001980_GCAT 294746 12729 12000 AAFM01000000 NHGRI, NCBI, Broad Institute Broad Institute NIH-NHGRI Eukaryota Ascomycota Ophiostomatales Ophiostomataceae Grosmannia Grosmannia clavigera EUKARYAL Grosmannia (Ophiostoma) clavigera Genome FUNGI-ASCOMYCOTA incomplete None USA Public Gi01924 002548_GCAT 226899 BCGSC Ministry of Forests and Range Eukaryota unclassified Gigartinales Gigartinaceae Chondrus Chondrus crispus EUKARYAL Chondrus crispus Genome PROTISTS-RHODOPHYTA incomplete Carrageenan producer Biotechnological None France Public Gi01925 002549_GCAT 2769 Genoscope CNRG Eukaryota Ascomycota Saccharomycetales unclassified Candida Candida tropicalis EUKARYAL Candida tropicalis CBS94 ABI 0.2x Genome-Regions FUNGI-ASCOMYCOTA incomplete Pathogen Medical, Human Pathogen Candidemia France Public Gi01909 001981_GCAT 5482 12497 15000 6 0 NCBI, Genolevures, PEDANT CNRS, Institut Pasteur BRG Ozier-Kalogeropoulos O odozier@pasteur.fr Eukaryota Ascomycota Saccharomycetales unclassified Candida Candida tropicalis EUKARYAL Candida tropicalis T1 MYA-3404 ABI 10x Genome FUNGI-ASCOMYCOTA Draft incomplete Pathogen Medical, Human Pathogen, FGI Candidemia USA Public Gi00128 001982_GCAT 294747 13675 15000 6 0 AAFN00000000 NCBI, Broad Institute Broad Institute NIH-NHGRI Eukaryota Ascomycota Sordariales Chaetomiaceae Chaetomium Chaetomium globosum EUKARYAL Chaetomium globosum CBS 148.51 ABI 7x Genome FUNGI-ASCOMYCOTA Draft incomplete Mycotoxin producer Medical, Human Pathogen, FGI Skin infection, Nail infection Cellulosic substrates USA 55.6 Public Gi00136 001983_GCAT 306901 12795 34336 NZ_AAFU00000000 NCBI, NHGRI, Broad Institute Broad Institute NIH-NHGRI Eukaryota Ascomycota Onygenales unclassified Chrysosporium Chrysosporium lucknowense EUKARYAL Chrysosporium lucknowense Genome FUNGI-ASCOMYCOTA incomplete USA Proprietary Gi00979 001984_GCAT 85845 Agencourt Bioscience, Dyadic International Eukaryota Ascomycota Onygenales unclassified Coccidioides Coccidioides posadasii EUKARYAL Coccidioides posadasii C735 ABI Genome FUNGI-ASCOMYCOTA incomplete Dimorphic, Pathogen Medical, Biothreat, Human Pathogen Coccidioidomycosis, Valley fever Soil USA Public Gi00166 001985_GCAT 222929 9616 28000 4 0 TIGR, NCBI TIGR NIH-NIAID Gardner MJ gardner@tigr.org Eukaryota Ascomycota Onygenales unclassified Coccidioides Coccidioides immitis EUKARYAL Coccidioides immitis RS ABI 14.4x Genome FUNGI-ASCOMYCOTA Draft incomplete Pathogen Medical, Human Pathogen, Biothreat, FGI Coccidioidomycosis, Valley fever Soil USA 46 Public Gi00165 001986_GCAT 246410 12883 28889 10457 NZ_AAEC00000000 Broad Institute, NCBI Broad Institute NIH-NHGRI MSC msc@broad.mit.edu Eukaryota Ascomycota Onygenales unclassified Coccidioides Coccidioides immitis EUKARYAL Coccidioides immitis H538.4 ABI 3.41x Genome FUNGI-ASCOMYCOTA complete Pathogen Medical, Human Pathogen, Biothreat, FGI Coccidioidomycosis, Valley fever Soil USA 46.9 Public Gi01213 001987_GCAT 396776 17355 27732 AASO00000000 Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Eukaryota Ascomycota Onygenales unclassified Coccidioides Coccidioides immitis EUKARYAL Coccidioides immitis RMSCC 2394 ABI 8.22x Genome FUNGI-ASCOMYCOTA Draft incomplete Pathogen Medical, Human Pathogen, Biothreat, FGI Coccidioidomycosis, Valley fever Soil USA 46 Public Gi01214 001988_GCAT 404692 17713 28817 NZ_AATX00000000 Broad Institute, NCBI Broad Institute NIH-NIAID MSC msc@broad.mit.edu Eukaryota Ascomycota Onygenales unclassified Coccidioides Coccidioides immitis EUKARYAL Coccidioides immitis RMSCC 3703 ABI 3x Genome FUNGI-ASCOMYCOTA Draft incomplete Pathogen Medical, Human Pathogen, Biothreat, FGI Coccidioidomycosis, Valley fever Soil USA Public Gi01215 001989_GCAT 5501 17761 27649 ABBC00000000 Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Eukaryota Ascomycota Onygenales unclassified Coccidioides Coccidioides posadasii EUKARYAL Coccidioides posadasii RMSCC 3700 ABI 3x Genome FUNGI-ASCOMYCOTA incomplete Pathogen Medical, Human Pathogen, Biothreat, FGI Coccidioidomycosis, Valley fever Soil USA Public Gi01216 001990_GCAT 199306 17781 4 0 Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Eukaryota Ascomycota Onygenales unclassified Coccidioides Coccidioides posadasii EUKARYAL Coccidioides posadasii Silveria ABI 5x Genome FUNGI-ASCOMYCOTA Draft incomplete Pathogen Medical, Human Pathogen, Biothreat, FGI Coccidioidomycosis, Valley fever Soil USA 46.8 Public Gi01900 002533_GCAT 443226 17787 26826 4 0 NZ_ABAI00000000 NCBI, Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Eukaryota Ascomycota Onygenales unclassified Coccidioides Coccidioides posadasii EUKARYAL Coccidioides posadasii RMSCC 3488 ABI 8x Genome FUNGI-ASCOMYCOTA incomplete Pathogen Medical, Human Pathogen, Biothreat, FGI Coccidioidomycosis, Valley fever Soil USA Public Gi01217 001991_GCAT 199306 17783 29000 4 0 Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Eukaryota Ascomycota Onygenales unclassified Coccidioides Coccidioides posadasii EUKARYAL Coccidioides posadasii RMSCC 1038 ABI 3x Genome FUNGI-ASCOMYCOTA incomplete Pathogen Medical, Human Pathogen, Biothreat, FGI Coccidioidomycosis, Valley fever Soil USA Public Gi01218 001992_GCAT 199306 17785 4 0 Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Eukaryota Ascomycota Onygenales unclassified Coccidioides Coccidioides posadasii EUKARYAL Coccidioides posadasii RMSCC 1040 ABI 3x Genome FUNGI-ASCOMYCOTA incomplete Pathogen Medical, Human Pathogen, Biothreat, FGI Coccidioidomycosis, Valley fever Soil USA Public Gi01219 001993_GCAT 199306 17789 4 0 Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Eukaryota Ascomycota Onygenales unclassified Coccidioides Coccidioides posadasii EUKARYAL Coccidioides posadasii RMSCC 1037 ABI 3x Genome FUNGI-ASCOMYCOTA incomplete Pathogen Medical, Human Pathogen, Biothreat, FGI Coccidioidomycosis, Valley fever Soil USA Public Gi01220 001994_GCAT 199306 17791 4 0 Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Eukaryota Ascomycota Onygenales unclassified Coccidioides Coccidioides posadasii EUKARYAL Coccidioides posadasii CPA 0001 ABI 3x Genome FUNGI-ASCOMYCOTA incomplete FGI Soil USA Public Gi01777 001995_GCAT 199306 17793 4 0 Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Eukaryota Ascomycota Onygenales unclassified Coccidioides Coccidioides posadasii EUKARYAL Coccidioides posadasii CPA 0020 ABI 3x Genome FUNGI-ASCOMYCOTA incomplete FGI Soil USA Public Gi01778 001996_GCAT 199306 17795 4 0 Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Eukaryota Ascomycota Onygenales unclassified Coccidioides Coccidioides posadasii EUKARYAL Coccidioides posadasii CPA 0066 ABI 3x Genome FUNGI-ASCOMYCOTA incomplete FGI Soil USA Public Gi01779 001997_GCAT 199306 17797 4 0 Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Eukaryota Ascomycota Onygenales unclassified Coccidioides Coccidioides posadasii EUKARYAL Coccidioides posadasii RMSCC 2133 ABI 8x Genome FUNGI-ASCOMYCOTA incomplete Pathogen Medical, Human Pathogen, Biothreat, FGI Coccidioidomycosis, Valley fever Soil USA Public Gi01222 001999_GCAT 199306 17763 4 0 Broad Institute Broad Institute NIH-NIAID MSC msc@broad.mit.edu Eukaryota Ascomycota Pleosporales Pleosporaceae Cochliobolus Cochliobolus heterostrophus EUKARYAL Cochliobolus heterostrophus C4 Genome FUNGI-ASCOMYCOTA incomplete Pathogen Agricultural, Plant Pathogen Leaf blight USA Proprietary Gi00779 002000_GCAT 5016 Syngenta AG Eukaryota Ascomycota Diaporthales Cryphonectriaceae Cryphonectria Cryphonectria parasitica EUKARYAL Cryphonectria parasitica EP155 Genome FUNGI-ASCOMYCOTA incomplete Pathogen Agricultural, Plant Pathogen Chestnut blight USA Public Gi01579 002001_GCAT 5116 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Basidiomycota Agaricales Psathyrellaceae Coprinopsis Coprinopsis cinerea EUKARYAL Coprinus (Coprinopsis) cinereus (cinerea) okayama7#130 ABI 10x Genome FUNGI-BASIDIOMYCOTA Draft incomplete Non-Pathogen, Multicellular, FGI Evolutionary None USA Public Gi01113 002002_GCAT 240176 1447 37500 13544 13 0 AACS00000000 NCBI, Broad Institute, Duke Univ Broad Institute NIH-NHGRI, NSF Broad Institute annotation-info@genome.wi.mit.edu Eukaryota Basidiomycota Agaricales Tricholomataceae Moniliophthora Moniliophthora perniciosa EUKARYAL Moniliophthora (Crinipellis) perniciosa Singer Genome FUNGI-BASIDIOMYCOTA incomplete Pathogen Agricultural, Plant Pathogen Witches' Broom Brazil Public Gi00175 002003_GCAT 153609 UNICAMP Univ of Campinas SEAGRI Goncalo AGP goncalo@unicamp.br Eukaryota Basidiomycota Tremellales Tremellaceae Filobasidiella Filobasidiella neoformans EUKARYAL Cryptococcus neoformans var. grubii serotypeA H99 A ABI 11x Genome FUNGI-BASIDIOMYCOTA Draft incomplete Bipolar, Heterothallic, Pathogen, FGI Medical, Human Pathogen Cryptococcosis Soil USA Public Gi00180 002004_GCAT 235443 411 14 0 AACO02000000 Broad Institute, Duke Center for Genome Technology Broad Institute, Duke Univ NIH-NHGRI Broad Institute annotation-info@genome.wi.mit.edu Eukaryota Basidiomycota Tremellales Tremellaceae Filobasidiella Filobasidiella neoformans EUKARYAL Cryptococcus neoformans gattii R265 serotypeB ABI 6x Genome FUNGI-BASIDIOMYCOTA Draft incomplete Bipolar, Heterothallic, Pathogen, FGI Medical, Human Pathogen Cryptococcosis Soil USA Public Gi00179 002005_GCAT 294750 13691 20000 14 0 AAFP00000000 NHGRI, Broad Institute Broad Institute NIH-NHGRI Eukaryota Basidiomycota Tremellales Tremellaceae Filobasidiella Filobasidiella neoformans EUKARYAL Cryptococcus (Filobasidiella) neoformans gattii WM276 (serotype B) ABI 6x Genome FUNGI-BASIDIOMYCOTA incomplete Bipolar, Heterothallic, Pathogen Medical, Human Pathogen, Animal Pathogen Meningoencephalitis, Cryptococcosis Soil Canada Public Gi01114 002006_GCAT 5207 13692 20000 14 0 Genome Sciences Centre Univ of British Columbia Genome Canada Eukaryota Basidiomycota Tremellales Tremellaceae Filobasidiella Filobasidiella neoformans EUKARYAL Cryptococcus neoformans grubii H99 A EST FUNGI-BASIDIOMYCOTA incomplete Bipolar, Heterothallic, Pathogen Medical, Human Pathogen Cryptococcosis Soil USA Public Ge00059 002007_GCAT 235443 15614 20000 14 0 NCBI, Univ of Oklahoma, Duke Univ, TIGR Univ of Oklahoma, Duke Univ Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Eukaryota Basidiomycota Tremellales Tremellaceae Filobasidiella Filobasidiella neoformans EUKARYAL Cryptococcus neoformans grubii 184A EST FUNGI-BASIDIOMYCOTA incomplete Bipolar, Heterothallic, Pathogen Medical, Human Pathogen Cryptococcosis Soil USA Public Ge00239 002841_GCAT 178876 15616 2525 NCBI, Univ of Oklahoma Univ of Oklahoma Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Eukaryota Basidiomycota Tremellales Tremellaceae Filobasidiella Filobasidiella neoformans EUKARYAL Cryptococcus neoformans neoformans B-3501A EST FUNGI-BASIDIOMYCOTA incomplete Bipolar, Heterothallic, Pathogen Medical, Human Pathogen Cryptococcosis Soil USA Public Ge00240 002842_GCAT 283643 15615 12000 NCBI, Univ of Oklahoma Univ of Oklahoma Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Eukaryota Basidiomycota Tremellales Tremellaceae Filobasidiella Filobasidiella neoformans EUKARYAL Cryptococcus neoformans B-3501A D ABI Genome FUNGI-BASIDIOMYCOTA Quality Draft incomplete Bipolar, Heterothallic, Pathogen Medical, Human Pathogen Cryptococcosis Soil International Public Gi00177 002008_GCAT 283643 12386 640281005 18519 6578 14 0 NZ_AAEY00000000 NCBI, Stanford Univ, Univ of Oklahoma, Univ of British Columbia, Integr8 Stanford Univ, Nagasaki Univ, Univ of British Columbia, Univ of Oklahoma NIH-NIAID, NSERC Hyman R hyman@sequence.stanford.edu Eukaryota Ascomycota Hypocreales Clavicipitaceae Epichloe Epichloe festucae EUKARYAL Epichloe festucae Grass plants Genome FUNGI-ASCOMYCOTA complete Symbiont, Plant symbiont Agricultural None USA Public Gi01241 002009_GCAT 35717 Univ of Kentucky NSF Schardl C http://www.ca.uky.edu/agcollege/plantpathology/schardl/schardl.htm Eukaryota Ascomycota Hypocreales Nectriaceae Gibberella Gibberella moniliformis EUKARYAL Fusarium (Gibberella) verticillioides (moniliformis) 7600 ABI 8x FRC M3125, NRRL 20956 Genome FUNGI-ASCOMYCOTA Draft incomplete Pathogen, Fumonisin producer Agricultural, Plant Pathogen, FGI Kernel, Ear rot USA Public Gi01066 002011_GCAT 334819 15553 46000 12 0 AAIM02000000 Broad Institute Broad Institute, Syngenta Webmaster annotation-info@genome.wi.mit.edu Eukaryota Ascomycota Hypocreales Nectriaceae Gibberella Gibberella moniliformis EUKARYAL Fusarium (Gibberella) verticillioides (moniliformis) Genome FUNGI-ASCOMYCOTA complete Pathogen Agricultural, Plant Pathogen Kernel, Ear rot USA Public Ge00244 002845_GCAT 117187 18359 87000 TIGR, USDA/ARS Brown DW browndw@ncaur.usda.gov Eukaryota Ascomycota Hypocreales Nectriaceae Gibberella Gibberella zeae EUKARYAL Fusarium (Gibberella) graminearum (zeae) Genome FUNGI-ASCOMYCOTA incomplete Pathogen Agricultural, Plant Pathogen Head blight USA Public Gi00262 002012_GCAT 5518 36000 4 0 Ceral Disease Laboratory Ceral Disease Laboratory USDA, NSF Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Eukaryota Ascomycota Hypocreales Nectriaceae Gibberella Gibberella zeae EUKARYAL Fusarium (Gibberella) graminearum (zeae) Genome FUNGI-ASCOMYCOTA incomplete Pathogen Agricultural, Plant Pathogen Head blight USA Proprietary Gi00780 002013_GCAT 5518 36000 4 0 Syngenta AG Eukaryota Ascomycota Hypocreales Nectriaceae Gibberella Fusarium proliferatum EUKARYAL Fusarium proliferatum Genome FUNGI-ASCOMYCOTA incomplete Pathogen Agricultural, Plant Pathogen Host Netherlands Proprietary Gi00261 002014_GCAT 42674 Greenomics Greenomics greenomics@plant.wag-ur.nl Eukaryota Ascomycota Hypocreales unclassified Fusarium Fusarium sporotrichioides EUKARYAL Fusarium sporotrichioides EST FUNGI-ASCOMYCOTA incomplete Trichothecenes producer, Filament-shaped, Toxin producer Agricultural, Medical, Plant Pathogen Food poisoning USA Public Ge00060 002015_GCAT 5514 9527 NCBI, Univ of Oklahoma Univ of Oklahoma Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Eukaryota Basidiomycota Polyporales Ganodermataceae Ganoderma Ganoderma lucidum EUKARYAL Ganoderma lucidum Genome FUNGI-BASIDIOMYCOTA incomplete Anti-inflammatory activity Medical, Pharmaceutical None Taiwan Public Gi00268 002016_GCAT 5315 Yang-Ming Univ, Taiwan Yang-Ming Univ, Taiwan, Veteran General Hospital-Taipei VGH-Taipei Chang Y-C d80106@mailsrv3.ym.edu.tw Eukaryota Glomeromycota Glomerales Glomeraceae Glomus Glomus intraradices EUKARYAL Glomus intraradices Populus trichocarpa Genome FUNGI-GLOMEROMYCOTA incomplete Symbiont, Endomycorrhizal Agricultural None Soil, Host, Plant root USA Public Gi00275 002017_GCAT 4876 16000 Joint Genome Institute, Symbiotic Fungi Genome Database Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Basidiomycota Tremellales Tremellaceae Tremella Tremella mesenterica EUKARYAL Tremella mesenterica Genome FUNGI-BASIDIOMYCOTA incomplete None USA Public Gi01960 002587_GCAT 5217 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Ascomycota Onygenales Ajellomycetaceae Ajellomyces Ajellomyces capsulatus EUKARYAL Ajellomyces (Histoplasma) capsulatus WU24 (NAmI) ABI 4x Genome FUNGI-ASCOMYCOTA incomplete Pathogen Medical, Human Pathogen, FGI Histoplasmosis Soil, Host USA Public Gi00980 002018_GCAT 339724 12654 7 0 NHGRI Broad Institute NIH-NHGRI Eukaryota Ascomycota Hypocreales unclassified Fusarium Fusarium oxysporum EUKARYAL Fusarium oxysporum lycopersici FGSC 4286 6.8x NRRL 34936 Genome FUNGI-ASCOMYCOTA Draft incomplete Pathogen Medical, Agricultural, Human Pathogen, Plant Pathogen, FGI Vascular wilts Host Infected tomato plant USA Public Gi01780 002019_GCAT 426428 18813 17000 AAXH00000000 Broad Institute Broad Institute NIH-NHGRI Eukaryota Ascomycota Onygenales Ajellomycetaceae Ajellomyces Ajellomyces capsulatus EUKARYAL Ajellomyces (Histoplasma) capsulatum G217B NAm1 ABI 8x Genome FUNGI-ASCOMYCOTA incomplete Pathogen Medical, Human Pathogen Histoplasmosis Host, Soil USA Public Gi00299 002020_GCAT 5037 12653 24000 7 0 AAJI00000000 Washington Univ Washington Univ, UCSF NIH-NIAID Eukaryota Ascomycota Onygenales Ajellomycetaceae Ajellomyces Ajellomyces capsulatus EUKARYAL Ajellomyces (Histoplasma) capsulatum G186AR ABI 2x Genome FUNGI-ASCOMYCOTA incomplete Pathogen Medical, Human Pathogen Histoplasmosis Host, Soil USA Public Gi01094 002021_GCAT 5037 12635 24000 7 0 NCBI, Washington Univ Washington Univ, UCSF NIH-NIAID Eukaryota Ascomycota Onygenales Ajellomycetaceae Ajellomyces Ajellomyces capsulatus EUKARYAL Ajellomyces (Histoplasma) capsulatum H88 Genome FUNGI-ASCOMYCOTA incomplete FGI Soil USA Public Gi01781 002022_GCAT 5037 Broad Institute NIH-NIAID Eukaryota Ascomycota Onygenales Ajellomycetaceae Ajellomyces Ajellomyces capsulatus EUKARYAL Ajellomyces (Histoplasma) capsulatum H143 Genome FUNGI-ASCOMYCOTA incomplete FGI Soil USA Public Gi01782 002023_GCAT 5037 Broad Institute NIH-NIAID Eukaryota Ascomycota Onygenales unclassified Lacazia Lacazia loboi EUKARYAL Lacazia (Paracoccidioides) loboi EDM7 Genome FUNGI-ASCOMYCOTA incomplete FGI USA Public Gi01783 002024_GCAT 121752 Broad Institute NIH-NIAID Eukaryota Ascomycota Onygenales unclassified Paracoccidioides Paracoccidioides brasiliensis EUKARYAL Paracoccidioides brasiliensis Pb01 Genome FUNGI-ASCOMYCOTA incomplete FGI USA Public Gi01784 002025_GCAT 121759 Broad Institute NIH-NIAID Eukaryota Ascomycota Onygenales unclassified Paracoccidioides Paracoccidioides brasiliensis EUKARYAL Paracoccidioides brasiliensis Pb03 Genome FUNGI-ASCOMYCOTA incomplete FGI USA Public Gi01785 002026_GCAT 121759 Broad Institute NIH-NIAID Eukaryota Ascomycota Onygenales unclassified Paracoccidioides Paracoccidioides brasiliensis EUKARYAL Paracoccidioides brasiliensis Pb18 Genome FUNGI-ASCOMYCOTA incomplete FGI USA Public Gi01786 002027_GCAT 121759 Broad Institute NIH-NIAID Eukaryota Ascomycota Onygenales Ajellomycetaceae Ajellomyces Ajellomyces dermatitidis EUKARYAL Ajellomyces dermatitidis ATCC 26199 ABI 3x ATCC 26199 Genome FUNGI-ASCOMYCOTA incomplete Pathogen Medical Blastomycosis Soil, Host USA Public Gi01095 002028_GCAT 5039 12672 28000 Washington Univ NIH-NIAID Eukaryota Ascomycota Onygenales Ajellomycetaceae Ajellomyces Ajellomyces dermatitidis EUKARYAL Ajellomyces (Blastomyces) dermatitidis ER-3 Genome FUNGI-ASCOMYCOTA incomplete incomplete FGI USA Public Gi01787 002029_GCAT 5039 28000 Broad Institute NIH-NIAID Eukaryota Ascomycota Onygenales Ajellomycetaceae Ajellomyces Ajellomyces dermatitidis EUKARYAL Ajellomyces (Blastomyces) dermatitidis SLH#14081 Genome FUNGI-ASCOMYCOTA incomplete incomplete FGI USA Public Gi01788 002030_GCAT 5039 28000 Broad Institute NIH-NIAID Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Kluyveromyces Kluyveromyces marxianus EUKARYAL Kluyveromyces marxianus var. marxianus CBS 712 ABI 0.2x Genome-Regions FUNGI-ASCOMYCOTA incomplete Homothalic Biotechnological, Food industry None Food France Public Gi01910 002031_GCAT 374272 12498 14000 10 0 PEDANT, Genolevures Univ Claude Bernard, Genoscope, Institut Pasteur BRG Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Kluyveromyces Kluyveromyces thermotolerans EUKARYAL Kluyveromyces thermotolerans CBS 6340 ABI 0.2x Genome-Regions FUNGI-ASCOMYCOTA incomplete Biotechnological, Food industry, Fermentation None France Public Gi01911 002032_GCAT 4916 12499 10600 7 0 PEDANT, Genolevures Univ Claude Bernard, Genoscope, Institut Pasteur BRG Eukaryota Basidiomycota Agaricales Amanitaceae Amanita Amanita bisporigera EUKARYAL Amanita bisporigera Forest trees Genome FUNGI-BASIDIOMYCOTA incomplete Symbiont, Poisoning Agricultural, Medical Food poisoning Host USA Public Gi01374 002034_GCAT 87325 Michigan State Univ, EctomycorrhizaDB Michigan State Univ Walton JD http://www.prl.msu.edu/walton.shtml Eukaryota Basidiomycota Agaricales Cortinariaceae Hebeloma Hebeloma cylindrosporum EUKARYAL Hebeloma cylindrosporum Pinus pinaster EST FUNGI-BASIDIOMYCOTA incomplete Symbiont Agricultural None Host France Public Ge00206 002035_GCAT 76867 EctomycorrhizaDB, INRA INRA Martin F fmartin@nancy.inra.fr Eukaryota Basidiomycota Russulales Bondarzewiaceae Heterobasidion Heterobasidion annosum EUKARYAL Heterobasidion annosum TC 32-1 Genome FUNGI-BASIDIOMYCOTA incomplete Pathogen, Necrotrophic Agricultural, Plant Pathogen USA Public Gi01578 002036_GCAT 13563 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Basidiomycota Agaricales Tricholomataceae Laccaria Laccaria bicolor EUKARYAL Laccaria bicolor S238N Forest trees EST FUNGI-BASIDIOMYCOTA incomplete Symbiont Agricultural None Host France Public Ge00061 002037_GCAT 29883 EctomycorrhizaDB INRA Martin F fmartin@nancy.inra.fr Eukaryota Basidiomycota Agaricales Tricholomataceae Laccaria Laccaria bicolor EUKARYAL Laccaria bicolor S238N-H82 Forest trees Genome FUNGI-BASIDIOMYCOTA incomplete Symbiont, Ectomycorrhizal Agricultural None Host USA Public Gi00308 002038_GCAT 29883 Joint Genome Institute, Symbiotic Fungi Genome Database Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Ascomycota Pleosporales Leptosphaeriaceae Leptosphaeria Leptosphaeria maculans EUKARYAL Leptosphaeria maculans Genome FUNGI-ASCOMYCOTA incomplete Pathogen, Parasite Agricultural, Plant Pathogen Blackleg Host France Public Gi00326 002039_GCAT 5022 Genoscope Genoscope Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Lodderomyces Lodderomyces elongisporus EUKARYAL Lodderomyces elongisporus NRRL YB-4239 ABI 8.7x Genome FUNGI-ASCOMYCOTA Draft incomplete Non-Pathogen FGI None USA 36.9 Public Gi00335 002040_GCAT 379508 12899 15460 NZ_AAPO00000000 NCBI, NHGRI Broad Institute NIH-NHGRI Eukaryota Ascomycota unclassified Magnaporthaceae Magnaporthe Magnaporthe grisea EUKARYAL Magnaporthe grisea EST FUNGI-ASCOMYCOTA incomplete Pathogen Agricultural, Plant Pathogen Rice blast USA Public Ge00062 002042_GCAT 148305 TIGR, Texas A&M Univ Texas A&M Univ NSF TIGR tgi@tigr.org Eukaryota Ascomycota Capnodiales Mycosphaerellaceae Mycosphaerella Mycosphaerella graminicola EUKARYAL Mycosphaerella graminicola Genome FUNGI-ASCOMYCOTA incomplete Pathogen Agricultural, Plant Pathogen Septoria leaf blotch United Kingdom Public Gi00394 002043_GCAT 54734 Greenomics Greenomics greenomics@plant.wag-ur.nl Eukaryota Ascomycota Capnodiales Mycosphaerellaceae Mycosphaerella Mycosphaerella graminicola EUKARYAL Mycosphaerella graminicola EST FUNGI-ASCOMYCOTA incomplete Pathogen Agricultural, Plant Pathogen Septoria leaf blotch USA Public Ge00209 002044_GCAT 54734 Syngenta Eukaryota Ascomycota Capnodiales Mycosphaerellaceae Mycosphaerella Mycosphaerella graminicola EUKARYAL Mycosphaerella graminicola. IPO323 Genome FUNGI-ASCOMYCOTA incomplete Pathogen Agricultural, Plant Pathogen Septoria leaf blotch USA Public Gi00795 002045_GCAT 336722 Joint Genome Institute Joint Genome Institute, USDA-ARS, Purdue Univ DOE Eukaryota Ascomycota Capnodiales Mycosphaerellaceae Mycosphaerella Mycosphaerella fijiensis EUKARYAL Mycosphaerella fijiensis CIRAD 86 Genome FUNGI-ASCOMYCOTA incomplete Pathogen Agricultural, Plant Pathogen Black Sigatoka USA Public Gi00796 002046_GCAT 383855 40000 Joint Genome Institute, USDA-ARS, Purdue Univ DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Ascomycota Hypocreales Nectriaceae Nectria Nectria haematococca EUKARYAL Nectria haematococca MPVI ABI 8.2x Genome FUNGI-ASCOMYCOTA incomplete Lignin degrader, Plastic degrader, Pesticide degrader Environmental, Bioremediation None USA Public Gi00981 002047_GCAT 70791 16586 40000 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Ascomycota Sordariales Sordariaceae Neurospora Neurospora crassa EUKARYAL Neurospora crassa EST FUNGI-ASCOMYCOTA incomplete Filament-shaped None USA 54 Public Ge00063 002049_GCAT 5141 43000 7 0 NGP Univ of New Mexico Eukaryota Ascomycota Sordariales Sordariaceae Neurospora Neurospora discreta EUKARYAL Neurospora discreta FGSC 8579 matA PS 4B Genome FUNGI-ASCOMYCOTA incomplete None USA Public Gi01601 002050_GCAT 29879 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Ascomycota Sordariales Sordariaceae Neurospora Neurospora tetrasperma EUKARYAL Neurospora tetrasperma FGSC 2508 matA Genome FUNGI-ASCOMYCOTA incomplete None USA Public Gi01602 002051_GCAT 40127 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Ascomycota Sordariales Sordariaceae Neurospora Neurospora discreta EUKARYAL Neurospora discreta FGSC 2509 mata Genome FUNGI-ASCOMYCOTA incomplete None USA Public Gi01603 002052_GCAT 29879 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Ascomycota Sordariales Sordariaceae Neurospora Neurospora crassa EUKARYAL Neurospora crassa 74-OR23-IVA Genome FUNGI-ASCOMYCOTA incomplete Filament-shaped None Germany Public Gi00404 002053_GCAT 5141 43000 MIPS Heinrich-Heine Univ, Duesseldorf DFG Schulte U uschulte@hs-bremen.de Eukaryota Ascomycota Onygenales unclassified Paracoccidioides Paracoccidioides brasiliensis EUKARYAL Paracoccidioides brasiliensis Pb01 ATCC-MYA-826 Genome FUNGI-ASCOMYCOTA incomplete Pathogen Medical, Human Pathogen Paracoccidioidomycosis Soil, Intestinal microflora Brazil Public Gi00430 002054_GCAT 121759 30000 Univ of Brasil Univ of Brasil, Federal Univ of Goias CT BRASIL, CNPq Eukaryota Basidiomycota Boletales Paxillaceae Paxillus Paxillus involutus EUKARYAL Paxillus involutus EST FUNGI-BASIDIOMYCOTA incomplete Poisoning Medical, Agricultural Food poisoning Sweden Public Ge00064 002055_GCAT 71150 Lund Univ Eukaryota Ascomycota Eurotiales Trichocomaceae Penicillium Penicillium chrysogenum EUKARYAL Penicillium chrysogenum Genome FUNGI-ASCOMYCOTA incomplete Medical, Biotechnological, Antibiotic production, Pharmaceutical None China Public Gi00441 002056_GCAT 5076 Beijing Genomics Institute Eukaryota Ascomycota Eurotiales Trichocomaceae Penicillium Penicillium marneffei EUKARYAL Penicillium marneffei ATCC 18224 ABI ATCC 18224 Genome FUNGI-ASCOMYCOTA Draft incomplete Pathogen Medical, Human Pathogen Penicilliosis Soil Viscera of a bamboo rat USA Public Gi01284 002057_GCAT 441960 19563 ABAR00000000 TIGR, Univ of Melbourne NIH-NIAID Andrianopoulos A http://www.hhmi.org/research/scholars/andrianopoulos_bio.html Eukaryota Basidiomycota Pucciniales Phakopsoraceae Phakopsora Phakopsora meibomiae EUKARYAL Phakopsora meibomiae ABI 8x Genome FUNGI-BASIDIOMYCOTA incomplete Pathogen Agricultural, Plant Pathogen Soybean rust USA Public Gi00581 002058_GCAT 169999 12905 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Basidiomycota Pucciniales Phakopsoraceae Phakopsora Phakopsora pachyrhizi EUKARYAL Phakopsora pachyrhizi HighCoT ABI 8x Genome FUNGI-BASIDIOMYCOTA incomplete Pathogen Agricultural, Plant Pathogen Soybean rust USA Public Gi00582 002059_GCAT 170000 12904 50000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota unclassified Mucorales Mucoraceae Phycomyces Phycomyces blakesleeanus EUKARYAL Phycomyces blakesleeanus NRRL1555, UBC21 ABI 7.5x Genome FUNGI-ZYGOMYCOTA Draft incomplete Filament-shaped None USA 50 Public Gi01096 002060_GCAT 4837 40000 Joint Genome Institute, Phycomyces Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota unclassified Physariida unclassified Physarum Physarum polycephalum EUKARYAL Physarum polycephalum ABI 6x Genome PROTISTS-MYCETOZOA incomplete Yellow-colored None USA Public Gi00750 002061_GCAT 5791 12851 NCBI, Washington Univ Washington Univ NIH-NHGRI Clifton S sclifton@watson.wustl.edu Eukaryota unclassified Physariida unclassified Physarum Physarum polycephalum EUKARYAL Physarum polycephalum EST PROTISTS-MYCETOZOA incomplete Yellow-colored None Canada Public Ge00065 002062_GCAT 5791 12701 9700 NCBI, PEP Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Pichia Pichia angusta EUKARYAL Pichia (Hansenula) angusta (polymorpha) Genome FUNGI-ASCOMYCOTA incomplete Methylotroph, Thermotolerant Biotechnological, Protein production None Soil Brazil Public Gi00459 002063_GCAT 4905 9000 6 0 UNICAMP Univ of Campinas Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Pichia Pichia angusta EUKARYAL Pichia (Hansenula) angusta (polymorpha) RB11 ABI 8x Genome FUNGI-ASCOMYCOTA Quality Draft Methylotroph, Thermotolerant Biotechnological, Protein production None Soil odc1 derivative of strain CBS 4732 Germany Proprietary Gi00460 002064_GCAT 4905 12565 9000 5933 6 0 NCBI QIAGEN Rhein Biotech Ramezani-Rad M ramezani@uni-duesseldorf.de Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Pichia Pichia angusta EUKARYAL Pichia (Hansenula) angusta (polymorpha) CBS4732 ABI 0.5x Genome-Regions FUNGI-ASCOMYCOTA incomplete Methylotroph, Thermotolerant Biotechnological, Protein production None Soil France Public Gi01912 002065_GCAT 4905 12500 9000 6 0 NCBI, Genolevures, PEDANT Institut Pasteur, Genoscope BRG Blandin G gblandin@pasteur.fr Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Pichia Pichia farinosa EUKARYAL Pichia farinosa (sorbitophila) CBS 7064 ABI 0.4x Genome-Regions FUNGI-ASCOMYCOTA Draft incomplete Halotolerant, Osmotolerant None France Public Gi01913 002066_GCAT 4920 12501 13900 7 0 AL414896, AL419724 NCBI, Genolevures, PEDANT Institut Pasteur, Genoscope BRG Potier S potier@gem.u-strasbg.fr Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Pichia Pichia pastoris EUKARYAL Pichia pastoris Genome FUNGI-ASCOMYCOTA incomplete Methylotroph Biotechnological, Protein production, Fermentation None USA Public Gi00457 002067_GCAT 4922 Integrated Genomics Inc, Keck Graduate Institute NIH Cregg J http://faculty.kgi.edu/cregg/ Eukaryota Neocallimastigomycota Neocallimastigales Neocallimastigaceae Piromyces Piromyces sp. E2 EUKARYAL Piromyces sp. E2 Genome FUNGI-CHYTRIDIOMYCOTA incomplete Anaerobe, Chytrid, Lacks mitochondria, Symbiont, Motile Biotechnological, Energy production, Hydrogen production, Evolutionary None USA Public Gi01097 002069_GCAT 73868 30000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Basidiomycota Boletales Pisolithaceae Pisolithus Pisolithus microcarpus EUKARYAL Pisolithus microcarpus 441 EST FUNGI-BASIDIOMYCOTA incomplete Ectomycorrhizal Agricultural None France Public Ge00066 002070_GCAT 178872 EctomycorrhizaDB INRA Martin F fmartin@nancy.inra.fr Eukaryota Ascomycota Pneumocystidales Pneumocystidaceae Pneumocystis Pneumocystis carinii EUKARYAL Pneumocystis carinii Genome FUNGI-ASCOMYCOTA incomplete Pathogen Medical, Human Pathogen Pneumocystis United Kingdom Public Gi00461 002071_GCAT 4754 7700 Sanger Institute Sanger Institute, Univ of Oxford Berriman M mb4@sanger.ac.uk Eukaryota Ascomycota Pneumocystidales Pneumocystidaceae Pneumocystis Pneumocystis carinii EUKARYAL Pneumocystis carinii carinii Genome FUNGI-ASCOMYCOTA incomplete Pathogen Medical, Human Pathogen Pneumocystis USA Public Gi00472 002072_GCAT 4754 125 7700 NCBI, Univ of Cincinnati, Univ of Kentucky Univ of Cincinnati NIH-NIAID Cushion MT http://ucimedweb.uc.edu/intmed/staff/Bios/facultydetails.cfm?ID=99 Eukaryota Ascomycota Pneumocystidales Pneumocystidaceae Pneumocystis Pneumocystis carinii EUKARYAL Pneumocystis carinii f. sp. mus Genome FUNGI-ASCOMYCOTA incomplete Pathogen Medical, Human Pathogen, FGI Pneumocystis USA Public Gi00471 002073_GCAT 4754 7500 NHGRI Broad Institute NIH-NHGRI Cushion MT http://ucimedweb.uc.edu/intmed/staff/Bios/facultydetails.cfm?ID=99 Eukaryota Basidiomycota Agaricales Pleurotaceae Pleurotus Pleurotus ostreatus EUKARYAL Pleurotus ostreatus N001 PC9 Genome FUNGI-BASIDIOMYCOTA incomplete Lignin degrader, Saprophyte Biotechnological None Aquatic USA Public Gi01576 002074_GCAT 5322 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Ascomycota Pneumocystidales Pneumocystidaceae Pneumocystis Pneumocystis jirovecii EUKARYAL Pneumocystis jiroveci (carinii hominis) ABI 10x Genome FUNGI-ASCOMYCOTA incomplete incomplete Pathogen Medical, Human Pathogen, FGI Pneumocystis USA Public Gi00473 002075_GCAT 42068 20529 7500 Univ of Cincinnati Univ of Cincinnati, Broad Institute Cushion MT http://ucimedweb.uc.edu/intmed/staff/Bios/facultydetails.cfm?ID=99 Eukaryota Ascomycota Pneumocystidales Pneumocystidaceae Pneumocystis Pneumocystis murina EUKARYAL Pneumocystis murina ABI 10x Genome FUNGI-ASCOMYCOTA incomplete incomplete Pathogen Medical, Human Pathogen, FGI Pneumocystis USA Public Gi02479 003204_GCAT 263815 20533 Broad Institute Eukaryota unclassified Ichthyophonida unclassified Sphaeroforma Sphaeroforma arctica EUKARYAL Sphaeroforma arctica Genome PROTISTS-CHOANOZOA incomplete incomplete USA Public Gi02480 003205_GCAT 72019 20463 Broad Institute Eukaryota Ascomycota Sordariales Lasiosphaeriaceae Podospora Podospora anserina EUKARYAL Podospora anserina S mat+ ABI 10x Genome-Regions FUNGI-ASCOMYCOTA incomplete complete Filament-shaped, Saprophyte Environmental None France Public Gi00475 002076_GCAT 5145 12954 7 0 NCBI, Genoscope Genoscope Eukaryota Ascomycota Sordariales Lasiosphaeriaceae Podospora Podospora anserina EUKARYAL Podospora anserina Genome FUNGI-ASCOMYCOTA incomplete Filament-shaped, Saprophyte, FGI Environmental None USA Public Gi00474 002077_GCAT 5145 12689 34000 7 0 NHGRI Broad Institute NIH-NHGRI Eukaryota Basidiomycota Polyporales Coriolaceae Postia Postia placenta EUKARYAL Postia placenta MAD 698-R ABI 7.5x Genome FUNGI-BASIDIOMYCOTA incomplete Brown-rot, Cellulose degrader None USA Public Gi01067 002078_GCAT 104341 19789 33000 17173 NCBI, Joint Genome Institute Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Basidiomycota Pucciniales Pucciniaceae Puccinia Puccinia graminis EUKARYAL Puccinia graminis tritici CRL 75-36-700-3 ABI 7.88x Genome FUNGI-BASIDIOMYCOTA Draft incomplete Pathogen, Parasite, FGI Agricultural, Plant Pathogen Stem rust USA Public Gi01690 002079_GCAT 418459 18535 67000 AAWC01000000 NCBI, Broad Institute, Univ of Minnesota Univ of Minnesota, Broad Institute NSF Szabo L lszabo@umn.edu Eukaryota unclassified Mucorales Mucoraceae Rhizopus Rhizopus oryzae EUKARYAL Rhizopus oryzae RA 99-880 ABI 10x Genome FUNGI-ZYGOMYCOTA Draft incomplete Pathogen, Agroclavine producer, FGI Medical, Human Pathogen Mucormycosis Soil, Food USA Public Gi00506 002080_GCAT 246409 13066 40000 AACW02000000 NCBI, Broad Institute Broad Institute NIH-NHGRI Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces bayanus EUKARYAL Saccharomyces bayanus uvarum CLIB 533, CBS7001 ABI 0.4x Genome-Regions FUNGI-ASCOMYCOTA Draft complete Biotechnological, Food industry None France Public Gi01914 002081_GCAT 4931 12477 11540 16 0 AL397139, AL402278 NCBI, Genolevures, PEDANT CNRS, Genoscope BRG Durrens P pascal.durrens@ibgc.u-bordeaux2.fr Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces bayanus EUKARYAL Saccharomyces bayanus 623-6C ABI 2.9x Genome FUNGI-ASCOMYCOTA Draft complete Biotechnological, Food industry None USA Public Gi00519 002082_GCAT 226231 1443 11540 16 0 AACG02000000 NCBI, Washington Univ Washington Univ Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces bayanus EUKARYAL Saccharomyces bayanus MCYC 623 ABI 6.4x Genome FUNGI-ASCOMYCOTA Quality Draft complete Biotechnological, Food industry None USA Public Gi00520 002083_GCAT 226127 1441 11540 16 0 AACA00000000 NCBI, Washington Univ Washington Univ Kellis M manoli@mit.edu Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces castellii EUKARYAL Saccharomyces (Naumovia) castellii NRRL Y-12630 ABI 3.9x Genome FUNGI-ASCOMYCOTA Quality Draft complete None USA Public Gi00521 002084_GCAT 226301 1444 11100 9 0 AACF00000000 NCBI, Washington Univ Washington Univ Johnston M mj@genetics.wustl.edu Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae RM11-1A ABI 10x Genome FUNGI-ASCOMYCOTA Quality Draft Biotechnological, Food industry, FGI None USA Public Gi00522 002085_GCAT 285006 13674 12000 16 0 AAEG01000000 NHGRI, NCBI, Broad Institute Broad Institute NIH-NHGRI Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae Kyokai no. 7 NBRC 101557 Genome FUNGI-ASCOMYCOTA incomplete Biotechnological, Food industry None Japan Public Gi01303 002086_GCAT 4932 12000 16 0 NITE NITE Fujita N fujita-nobuyuki@nite.go.jp Archaea Euryarchaeota unclassified unclassified unclassified methanogenic archaeon SANAE ARCHAEAL Euryachaeota sp. SANAE (Rice Cluster I) Genome EURYARCHAEOTA incomplete Methanogen, Lithotroph Biotechnological, Food industry None Japanese rice paddy soil Japan Public Gi01888 002087_GCAT 304371 NITE Imachi H imachi@vos.nagaokaut.ac.jp Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae EC1118 Genome FUNGI-ASCOMYCOTA incomplete None France Public Gi01789 002088_GCAT 4932 13000 Genoscope Genoscope Barbe V vbarbe@genoscope.cns.fr Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae YJM789 ABI 10x Genome FUNGI-ASCOMYCOTA Quality Draft Clinical isolate Biotechnological, Food industry, Medical None Lung of an AIDS patient USA Public Gi01285 002089_GCAT 307796 13304 12000 16 0 AAFW01000000 NCBI, Stanford Univ Stanford Univ Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Kazachstania Kazachstania exigua EUKARYAL Saccharomyces (Kazachstania) exiguus CBS 379 ABI 0.2x Genome-Regions FUNGI-ASCOMYCOTA incomplete None Soil France Public Gi01915 002090_GCAT 34358 12495 18000 16 0 Genolevures, PEDANT CNRS, Genoscope BRG Bon E ebon@grignon.inra.fr Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Lachancea Lachancea kluyveri EUKARYAL Saccharomyces kluyveri CBS3082 ABI 0.2x Genome-Regions FUNGI-ASCOMYCOTA incomplete None France Public Gi01916 002091_GCAT 4934 12483 12600 8 0 NCBI, Genolevures, PEDANT CNRS, Genoscope BRG Neuveglise C ncecile@grignon.inra.fr Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Lachancea Lachancea kluyveri EUKARYAL Saccharomyces kluyveri NRRL Y-12651 ABI 3.6x Genome FUNGI-ASCOMYCOTA Draft None USA Public Gi00523 002092_GCAT 226302 1445 12600 8 0 AACE00000000 NCBI, Washington Univ Washington Univ Johnston M mj@genetics.wustl.edu Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces kudriavzevii EUKARYAL Saccharomyces kudriavzevii IFO 1802 ABI 3.4x Genome FUNGI-ASCOMYCOTA Draft complete None USA Public Gi00524 002093_GCAT 226230 1442 1200 16 0 AACI00000000 NCBI, Washington Univ Washington Univ Johnston M mj@genetics.wustl.edu Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces mikatae EUKARYAL Saccharomyces mikatae IFO 1815 ABI 2.8x Genome FUNGI-ASCOMYCOTA Draft complete None USA Public Gi02172 002833_GCAT 226126 9601 12120 16 0 AACH01000000 NCBI Washington Univ Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces mikatae EUKARYAL Saccharomyces mikatae IFO 1815 ABI 5.9x Genome FUNGI-ASCOMYCOTA Quality Draft None USA Public Gi00525 002094_GCAT 226126 374 12120 16 0 AABZ00000000 NCBI, Broad Institute Broad Institute Kellis M manoli@mit.edu Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus NRRL Y-17217 ABI 7.7x Genome FUNGI-ASCOMYCOTA Quality Draft complete Biotechnological, Food industry, FGI None USA Public Gi00526 002095_GCAT 226125 1440 11750 16 0 AABY00000000 NCBI, Broad Institute Broad Institute Kellis M manoli@mit.edu Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces pastorianus EUKARYAL Saccharomyces pastorianus (carlsbergensis) EST FUNGI-ASCOMYCOTA incomplete Denmark Public Ge00067 002096_GCAT 27292 Carlsberg Research Center Carlsberg Research Center Brandt A http://www.crc.dk/yeast/yeasthome/staff/anders_brandt.htm Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces pastorianus EUKARYAL Saccharomyces pastorianus Weihenstephan Genome FUNGI-ASCOMYCOTA complete Japan Public Gi00527 002097_GCAT 27292 26000 Kitasato Univ Hattori M hattori@genome.ls.kitasato-u.ac.jp Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces servazzii EUKARYAL Saccharomyces servazzii CBS 4311 ABI 0.2x Genome-Regions FUNGI-ASCOMYCOTA incomplete complete None France Public Gi01917 002098_GCAT 27293 12496 12300 12 0 NCBI, Genolevures, PEDANT CNRS, Genoscope BRG Casaregola S serge@grignon.inra.fr Eukaryota Basidiomycota Agaricales Schizophyllaceae Schizophyllum Schizophyllum commune EUKARYAL Schizophyllum commune Genome FUNGI-BASIDIOMYCOTA incomplete Pathogen Agricultural, Plant Pathogen, Human Pathogen White rot, Mycosis Netherlands 57 Public Gi00548 002099_GCAT 5334 37000 14 Plant Research International, Wageningen Eukaryota Basidiomycota Agaricales Schizophyllaceae Schizophyllum Schizophyllum commune EUKARYAL Schizophyllum commune. EST FUNGI-BASIDIOMYCOTA incomplete Pathogen Agricultural, Plant Pathogen, Human Pathogen White rot, Mycosis USA Public Ge00068 002100_GCAT 5334 Southeast Missouri State Univ Southeast Missouri State Univ SEMO agathman@biology.semo.edu Eukaryota Ascomycota Schizosaccharomycetales Schizosaccharomycetaceae Schizosaccharomyces Schizosaccharomyces octosporus EUKARYAL Schizosaccharomyces octosporus ABI 9x Genome FUNGI-ASCOMYCOTA incomplete FGI None USA Public Gi00982 002101_GCAT 4899 13639 14000 NCBI, Broad Institute Broad Institute NIH-NHGRI Eukaryota Ascomycota Schizosaccharomycetales Schizosaccharomycetaceae Schizosaccharomyces Schizosaccharomyces japonicus EUKARYAL Schizosaccharomyces japonicus yFS275 ABI 9x Genome FUNGI-ASCOMYCOTA Quality Draft incomplete FGI None USA Public Gi00983 002102_GCAT 402676 13640 14000 AATM01000000 NCBI Broad Institute, Univ of Massachusetts NIH-NHGRI Eukaryota Ascomycota Helotiales Sclerotiniaceae Sclerotinia Sclerotinia sclerotiorum EUKARYAL Sclerotinia sclerotiorum 1980 ABI 8x ATCC18683 Genome FUNGI-ASCOMYCOTA Draft Pathogen Agricultural, Plant Pathogen, FGI White mold, Root rot USA Public Gi01223 002103_GCAT 325569 15530 38000 AAGT01000000 NCBI, Broad Institute Broad Institute USDA Eukaryota Ascomycota Eurotiales Trichocomaceae Talaromyces Talaromyces stipitatus EUKARYAL Talaromyces stipitatus ATCC 10500 ABI 8.1x ATCC 10500 Genome FUNGI-ASCOMYCOTA Draft incomplete Non-Pathogen Medical None USA Public Gi01286 002104_GCAT 441959 19557 ABAS00000000 TIGR NIH-NIAID Eukaryota Ascomycota Hypocreales Hypocreaceae Hypocrea Hypocrea jecorina EUKARYAL Trichoderma (Hypocrea) reesei (jecorina) QM6A EST FUNGI-ASCOMYCOTA incomplete Biotechnological, Cellulase production None USA Public Ge00069 002105_GCAT 431241 33000 North Carolina State Univ North Carolina State Univ Mitchell T thomas_mitchell@ncsu.edu Eukaryota Ascomycota Hypocreales Hypocreaceae Hypocrea Hypocrea jecorina EUKARYAL Trichoderma (Hypocrea) reesei (jecorina) QM6a ATCC56765 Genome FUNGI-ASCOMYCOTA Draft incomplete Biotechnological, Cellulase production None USA Public Gi00665 002106_GCAT 431241 15571 33000 AAIL01000000 Joint Genome Institute Joint Genome Institute, Univ of Wisconsin DOE Cullen D dcullen@facstaff.wisc.edu Eukaryota Ascomycota Hypocreales Hypocreaceae Hypocrea Hypocrea virens EUKARYAL Trichoderma (Hypocrea) virens Gv29-8 ABI Genome FUNGI-ASCOMYCOTA Draft incomplete None USA Public Gi01098 002107_GCAT 413071 19983 35000 ABDF00000000 Joint Genome Institute, Texas A&M Univ DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Basidiomycota Agaricales Tricholomataceae Tricholoma Tricholoma matsutake EUKARYAL Tricholoma matsutake Genome FUNGI-BASIDIOMYCOTA incomplete Japan Public Gi00824 002108_GCAT 40145 Dragon Genomics Eukaryota Ascomycota Pezizales Tuberaceae Tuber Tuber borchii EUKARYAL Tuber borchii EST FUNGI-ASCOMYCOTA incomplete France Public Ge00070 002109_GCAT 42251 EctomycorrhizaDB INRA Martin F fmartin@nancy.inra.fr Eukaryota Ascomycota Pezizales Tuberaceae Tuber Tuber melanosporum EUKARYAL Tuber melanosporum Genome FUNGI-ASCOMYCOTA incomplete France Public Gi01790 002110_GCAT 39416 Genoscope Eukaryota Ascomycota Onygenales Onygenaceae Uncinocarpus Uncinocarpus reesii EUKARYAL Uncinocarpus reesii 1704 ABI 5x Genome FUNGI-ASCOMYCOTA Draft incomplete Non-Pathogen FGI None USA Public Gi00673 002111_GCAT 336963 15634 30000 AAIW01000000 NHGRI, NCBI, Broad Institute Broad Institute NIH-NHGRI Eukaryota Basidiomycota Ustilaginales Ustilaginaceae Ustilago Ustilago maydis EUKARYAL Ustilago maydis FB1 Genome FUNGI-BASIDIOMYCOTA incomplete complete Pathogen Agricultural, Plant Pathogen Corn smut USA Proprietary Gi00676 002112_GCAT 5270 2000 23 0 NCBI Exelixis Inc Eukaryota Ascomycota unclassified Teloschistaceae Xanthoria Xanthoria parietina EUKARYAL Xanthoria parietina Genome FUNGI-ASCOMYCOTA incomplete USA Public Gi01099 002113_GCAT 107463 40000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Ascomycota Saccharomycetales Saccharomycetaceae Zygosaccharomyces Zygosaccharomyces rouxii EUKARYAL Zygosaccharomyces rouxii CBS732 ABI 0.4x Genome FUNGI-ASCOMYCOTA Draft complete Halotolerant, Osmotolerant, Homothalic Biotechnological, Food industry, Food spoilage France Public Gi01287 002114_GCAT 4956 12502 12800 7 0 Genolevures, PEDANT CNRS, Genoscope BRG de Montigny J demontigny@gem.u-strasbr.fr Eukaryota unclassified Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica EUKARYAL Peronospora (Hyaloperonospora) parasitica EST PROTISTS-STRAMENOPILES incomplete USA Public Ge00071 002115_GCAT 123356 Virginia Polytechnic Institute NSF Tyler BM bmtyler@vt.edu Eukaryota unclassified Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica EUKARYAL Peronospora (Hyaloperonospora) parasitica Emoy2 Genome PROTISTS-STRAMENOPILES incomplete USA Public Gi01375 002116_GCAT 123356 Washington Univ NSF Eukaryota Nematoda Rhabditida Ancylostomatidae Ancylostoma Ancylostoma caninum EUKARYAL Ancylostoma caninum EST NEMATODES incomplete USA Public Ge00072 002117_GCAT 29170 NematodeNet Washington Univ, North Carolina State Univ McCarter J mccarter@genetics.wustl.edu Eukaryota Nematoda Rhabditida Ancylostomatidae Ancylostoma Ancylostoma caninum EUKARYAL Ancylostoma caninum Genome NEMATODES incomplete incomplete Diarrhea, Anemia USA Public Gi02466 003188_GCAT 29170 20441 NematodeNet Washington Univ, North Carolina State Univ Eukaryota Arthropoda Diptera Culicidae Anopheles Anopheles gambiae EUKARYAL Anopheles gambiae M ABI Genome ARTHROPODA incomplete incomplete USA Public Gi02467 003189_GCAT 377271 20295 Washington Univ Eukaryota Nematoda Rhabditida Ancylostomatidae Necator Necator americanus EUKARYAL Necator americanus Genome NEMATODES incomplete incomplete USA Public Gi02474 003198_GCAT 51031 20443 Washington Univ Eukaryota Arthropoda Xiphosura Limulidae Limulus Limulus polyphemus EUKARYAL Limulus polyphemus ABI 6x Genome ARTHROPODA incomplete incomplete USA Public Gi02473 003197_GCAT 6850 20489 Washington Univ Eukaryota Nematoda Rhabditida Cooperiidae Cooperia Cooperia oncophora EUKARYAL Cooperia oncophora Genome NEMATODES incomplete incomplete Parasitic, Pathogen Medical, Cattle Pathogen USA Public Gi02469 003192_GCAT 27828 20299 Washington Univ Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila mauritiana EUKARYAL Drosophila mauritiana 454 Genome ARTHROPODA incomplete incomplete USA Public Gi02470 003193_GCAT 7226 20289 Washington Univ Eukaryota Arthropoda Diptera Culicidae Anopheles Anopheles gambiae EUKARYAL Anopheles gambiae S ABI Genome ARTHROPODA incomplete incomplete USA Public Gi02468 003190_GCAT 377270 20301 J Craig Venter Institute Eukaryota Arthropoda Diptera Culicidae Anopheles Anopheles gambiae EUKARYAL Anopheles gambiae S ABI Genome ARTHROPODA complete complete France Public Ge00284 003191_GCAT 7165 13970 3700 Genoscope Institut Pasteur, Genoscope Eukaryota Nematoda Rhabditida Ancylostomatidae Ancylostoma Ancylostoma ceylanicum EUKARYAL Ancylostoma ceylanicum EST NEMATODES incomplete USA Public Ge00073 002118_GCAT 53326 12860 10651 NematodeNet Washington Univ, Univ of Colorado McCarter J mccarter@genetics.wustl.edu Eukaryota Nematoda Rhabditida Ancylostomatidae Ancylostoma Ancylostoma duodenale EUKARYAL Ancylostoma duodenale EST NEMATODES incomplete USA Public Ge00074 002119_GCAT 51022 12858 NematodeNet Washington Univ NIH-NIAID McCarter J mccarter@genetics.wustl.edu Eukaryota Nematoda Ascaridida Ascarididae Ascaris Ascaris lumbricoides EUKARYAL Ascaris lumbicoides EST NEMATODES incomplete USA Public Ge00075 002120_GCAT 6252 NematodeNet Washington Univ NIH-NIAID McCarter J mccarter@genetics.wustl.edu Eukaryota Nematoda Ascaridida Ascarididae Ascaris Ascaris suum EUKARYAL Ascaris suum EST NEMATODES incomplete United Kingdom Public Ge00076 002121_GCAT 6253 10000 Univ of Edinburgh, Sanger Institute, Blaxter Lab, NematodeNet Sanger Institute, Univ of Edinburgh Beowulf Genomics Blaxter M http://helios.bto.ed.ac.uk/icapb/cgi-bin/CV_out.cgi?user=blaxter Eukaryota Nematoda Spirurida Onchocercidae Brugia Brugia malayi EUKARYAL Brugia malayi EST NEMATODES incomplete incomplete United Kingdom Public Ge00077 002122_GCAT 6279 12862 300000 NCBI, Sanger Institute, Univ of Edinburgh, ParaDB, Blaxter Lab, NematodeNet Sanger Institute, Univ of Edinburgh Beowulf Genomics Blaxter M http://helios.bto.ed.ac.uk/icapb/cgi-bin/CV_out.cgi?user=blaxter Eukaryota Nematoda Spirurida Onchocercidae Brugia Brugia malayi EUKARYAL Brugia malayi Genome-Regions NEMATODES incomplete USA Public Gi02174 002840_GCAT 6279 159 6 0 NCBI, Sanger Institute Sanger Institute, Univ of Edinburgh Berriman M mb4@sanger.ac.uk Eukaryota Nematoda Rhabditida Heterorhabditidae Heterorhabditis Heterorhabditis bacteriophora EUKARYAL Heterorhabditis bacteriophora Genome NEMATODES incomplete USA Public Gi01479 002124_GCAT 37862 13976 Washington Univ Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth Eukaryota Nematoda Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei EUKARYAL Caenorhabditis remanei ABI 9x Genome NEMATODES Draft incomplete USA Public Gi00116 002125_GCAT 31234 12588 AAGD00000000 NCBI, Washington Univ, NHGRI Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth Eukaryota Nematoda Rhabditida Rhabditidae Caenorhabditis Caenorhabditis japonica EUKARYAL Caenorhabditis japonica ABI 9x Genome NEMATODES incomplete USA Public Gi00115 002126_GCAT 281687 12591 100000 NHGRI, NCBI, Washington Univ Washington Univ NIH-NHGRI Eukaryota Nematoda Rhabditida Rhabditidae Caenorhabditis Caenorhabditis brenneri EUKARYAL Caenorhabditis brenneri CB5161, PB2801 ABI 9x Genome NEMATODES Draft incomplete USA Public Gi00117 002127_GCAT 135651 20035 ABEG00000000 Washington Univ, NHGRI Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth Eukaryota Nematoda Spirurida Onchocercidae Dirofilaria Dirofilaria immitis EUKARYAL Dirofilaria immitis EST NEMATODES incomplete USA Public Ge00078 002128_GCAT 6287 NematodeNet Washington Univ, North Carolina State Univ NIH-NIAID McCarter J mccarter@genetics.wustl.edu Eukaryota Nematoda Tylenchida Heteroderidae Globodera Globodera pallida EUKARYAL Globodera pallida EST NEMATODES incomplete International Public Ge00079 002129_GCAT 36090 100000 NematodeNet Wageningen Univ, Scottish Crop Research Institute Smant G geert.smant@nema.dpw.wau.nl Eukaryota Nematoda Tylenchida Heteroderidae Globodera Globodera rostochiensis EUKARYAL Globodera rostochiensis EST NEMATODES incomplete International Public Ge00080 002130_GCAT 31243 NematodeNet Washington Univ, Wageningen Univ NSF Smant G geert.smant@nema.dpw.wau.nl Eukaryota Nematoda Rhabditida Haemonchidae Haemonchus Haemonchus contortus EUKARYAL Haemonchus contortus ABI 5x Genome NEMATODES incomplete United Kingdom Public Gi01761 002131_GCAT 6289 Univ of Edinburgh, Sanger Institute, NematodeNet Sanger Institute, Univ of Edinburgh Beowulf Genomics Blaxter M http://helios.bto.ed.ac.uk/icapb/cgi-bin/CV_out.cgi?user=blaxter Eukaryota Nematoda Rhabditida Haemonchidae Haemonchus Haemonchus placei EUKARYAL Haemonchus placei EST NEMATODES incomplete complete United Kingdom Public Ge00270 002872_GCAT 6290 7500 Sanger Institute Sanger Institute Beowulf Genomics Berriman M mb4@sanger.ac.uk Eukaryota Nematoda Rhabditida Heligmonellidae Nippostrongylus Nippostrongylus brasiliensis EUKARYAL Nippostrongylus brasiliensis Genome NEMATODES incomplete complete United Kingdom Public Gi02176 002873_GCAT 27835 Sanger Institute Sanger Institute Beowulf Genomics Berriman M mb4@sanger.ac.uk Eukaryota Nematoda Rhabditida Heligmonellidae Nippostrongylus Nippostrongylus brasiliensis EUKARYAL Nippostrongylus brasiliensis Genome NEMATODES incomplete complete USA Public Gi02475 003200_GCAT 27835 20447 Washington Univ Eukaryota Nematoda Rhabditida Heligmonellidae Nippostrongylus Nippostrongylus brasiliensis EUKARYAL Nippostrongylus brasiliensis EST NEMATODES incomplete complete USA Public Ge00286 003199_GCAT 27835 20449 7004 Washington Univ Washington Univ Eukaryota Nematoda Ascaridida Ascarididae Ascaris Ascaris lumbricoides EUKARYAL Ascaris lumbricoides Genome NEMATODES incomplete complete United Kingdom Public Gi02177 002874_GCAT 6252 230000 Sanger Institute Sanger Institute Beowulf Genomics Berriman M mb4@sanger.ac.uk Eukaryota Nematoda Rhabditida Ancylostomatidae Ancylostoma Ancylostoma duodenale EUKARYAL Ancylostoma duodenale Genome NEMATODES incomplete complete United Kingdom Public Gi02178 002875_GCAT 51022 NCBI, Sanger Institute Sanger Institute Beowulf Genomics Berriman M mb4@sanger.ac.uk Eukaryota Nematoda Rhabditida Strongyloididae Strongyloides Strongyloides stercoralis EUKARYAL Strongyloides stercoralis ABI Genome NEMATODES incomplete complete United Kingdom Public Gi02179 002876_GCAT 6248 Sanger Institute Sanger Institute Beowulf Genomics Berriman M mb4@sanger.ac.uk Eukaryota Nematoda Trichocephalida Trichuridae Trichuris Trichuris trichiura EUKARYAL Trichuris trichiura ABI Genome NEMATODES incomplete complete United Kingdom Public Gi02180 002877_GCAT 36087 Sanger Institute Sanger Institute Beowulf Genomics Berriman M mb4@sanger.ac.uk Eukaryota Nematoda Tylenchida Heteroderidae Heterodera Heterodera glycines EUKARYAL Heterodera glycines EST NEMATODES incomplete USA Public Ge00083 002132_GCAT 51029 92000 NematodeNet Washington Univ, North Carolina State Univ NIH-NIAID McCarter mccarter@genetics.wustl.edu Eukaryota Nematoda Spirurida Onchocercidae Litomosoides Litomosoides sigmodontis EUKARYAL Litomosoides sigmodontis EST NEMATODES incomplete United Kingdom Public Ge00084 002133_GCAT 42156 NematodeNet Edinburgh Univ Blaxter M http://helios.bto.ed.ac.uk/icapb/cgi-bin/CV_out.cgi?user=blaxter Eukaryota Nematoda Tylenchida Meloidogynidae Meloidogyne Meloidogyne arenaria EUKARYAL Meloidogyne arenaria EST NEMATODES incomplete USA Public Ge00085 002134_GCAT 6304 12718 NematodeNet Washington Univ McCarter mccarter@genetics.wustl.edu Eukaryota Nematoda Tylenchida Meloidogynidae Meloidogyne Meloidogyne artiellia EUKARYAL Meloidogyne artellia EST NEMATODES incomplete USA Public Ge00086 002135_GCAT 42426 12728 NematodeNet Washington Univ, North Carolina State Univ McCarter mccarter@genetics.wustl.edu Eukaryota Nematoda Tylenchida Meloidogynidae Meloidogyne Meloidogyne chitwoodi EUKARYAL Meloidogyne chitwoodi EST NEMATODES incomplete USA Public Ge00087 002136_GCAT 59747 12732 NematodeNet Washington Univ, North Carolina State Univ McCarter mccarter@genetics.wustl.edu Eukaryota Nematoda Tylenchida Meloidogynidae Meloidogyne Meloidogyne hapla EUKARYAL Meloidogyne hapla Genome NEMATODES incomplete USA Public Gi00715 002137_GCAT 6305 12686 NematodeNet Washington Univ, North Carolina State Univ NSF McCarter mccarter@genetics.wustl.edu Eukaryota Nematoda Tylenchida Meloidogynidae Meloidogyne Meloidogyne incognita EUKARYAL Meloidogyne incognita EST NEMATODES incomplete USA Public Ge00088 002138_GCAT 6306 NematodeNet Washington Univ, Wageningen Univ McCarter mccarter@genetics.wustl.edu Eukaryota Nematoda Tylenchida Meloidogynidae Meloidogyne Meloidogyne javanica EUKARYAL Meloidogyne javanica EST NEMATODES incomplete USA Public Ge00089 002139_GCAT 6303 NematodeNet Washington Univ, North Carolina State Univ McCarter mccarter@genetics.wustl.edu Eukaryota Nematoda Rhabditida Ancylostomatidae Necator Necator americanus EUKARYAL Necator americanus EST NEMATODES incomplete complete United Kingdom Public Ge00090 002140_GCAT 51031 10000 Univ of Edinburgh, Sanger Institute, NematodeNet Sanger Institute, Univ of Edinburgh Beowulf Genomics Blaxter M http://helios.bto.ed.ac.uk/icapb/cgi-bin/CV_out.cgi?user=blaxter Eukaryota Nematoda Spirurida Onchocercidae Onchocerca Onchocerca ochengi EUKARYAL Onchocerca ochengi EST NEMATODES incomplete USA Public Ge00091 002141_GCAT 42157 NematodeNet Washington Univ Edna McConnell Clark Foundation Williams S genome@smith.edu Eukaryota Nematoda Spirurida Onchocercidae Onchocerca Onchocerca volvulus EUKARYAL Onchocerca volvulus EST NEMATODES incomplete USA Public Ge00092 002142_GCAT 6282 Smith College, Filarial Genome Project Resource Center, NematodeNet, TIGR Smith College Edna McConnell Clark Foundation Williams S genome@smith.edu Eukaryota Nematoda Rhabditida Haemonchidae Ostertagia Ostertagia ostertagi EUKARYAL Ostertagia ostertagi EST NEMATODES incomplete International Public Ge00093 002143_GCAT 6317 20475 7006 NematodeNet Washington Univ, Edinburgh Univ NIH McCarter mccarter@genetics.wustl.edu Eukaryota Nematoda Rhabditida Strongyloididae Parastrongyloides Parastrongyloides trichosuri EUKARYAL Parastrongyloides trichosuri EST NEMATODES incomplete International Public Ge00094 002144_GCAT 131310 NematodeNet Washington Univ, AgResearch NIH McCarter mccarter@genetics.wustl.edu Eukaryota Nematoda Diplogasterida Neodiplogasteridae Pristionchus Pristionchus pacificus EUKARYAL Pristionchus pacificus california Genome NEMATODES incomplete USA Public Gi00756 002145_GCAT 54126 Washington Univ Washington Univ NIH-NHGRI Clifton S http://genome.wustl.edu/Bio/email_data.cgi?staff=Sandra%20Clifton Eukaryota Nematoda Diplogasterida Neodiplogasteridae Pristionchus Pristionchus pacificus EUKARYAL Pristionchus pacificus. EST NEMATODES incomplete International Public Ge00095 002146_GCAT 54126 NematodeNet, Max Planck Institute Washington Univ, Max Planck Institute Max Planck Society McCarter mccarter@genetics.wustl.edu Eukaryota Nematoda Rhabditida Strongyloididae Strongyloides Strongyloides ratti EUKARYAL Strongyloides ratti EST NEMATODES incomplete International Public Ge00096 002147_GCAT 34506 NematodeNet Washington Univ, Univ of Bristol NIH, MRC McCarter mccarter@genetics.wustl.edu Eukaryota Nematoda Rhabditida Strongyloididae Strongyloides Strongyloides stercoralis EUKARYAL Strongyloides stercoralis EST NEMATODES incomplete USA Public Ge00097 002148_GCAT 6248 NematodeNet Washington Univ NIH McCarter mccarter@genetics.wustl.edu Eukaryota Nematoda Rhabditida Haemonchidae Teladorsagia Teladorsagia circumcincta EUKARYAL Teladorsagia circumcincta EST NEMATODES incomplete United Kingdom Public Ge00098 002149_GCAT 45464 10000 Univ of Edinburgh, Sanger Institute, NematodeNet Sanger Institute, Univ of Edinburgh Beowulf Genomics Blaxter M http://helios.bto.ed.ac.uk/icapb/cgi-bin/CV_out.cgi?user=blaxter Eukaryota Nematoda Ascaridida Toxocaridae Toxocara Toxocara canis EUKARYAL Toxocara canis EST NEMATODES incomplete USA Public Ge00279 002150_GCAT 6265 NematodeNet Washington Univ, North Carolina State Univ NIH McCarter mccarter@genetics.wustl.edu Eukaryota Nematoda Trichocephalida Trichinellidae Trichinella Trichinella spiralis EUKARYAL Trichinella spiralis Genome NEMATODES incomplete USA Public Gi00757 002151_GCAT 6334 12603 Washington Univ Washington Univ NIH-NHGRI Clifton S http://genome.wustl.edu/Bio/email_data.cgi?staff=Sandra%20Clifton Eukaryota Nematoda Trichocephalida Trichinellidae Trichinella Trichinella spiralis EUKARYAL Trichinella spiralis EST NEMATODES incomplete International Public Ge00099 002152_GCAT 6334 12647 21000 NematodeNet, Univ of Edinburgh Washington Univ, Univ of Edinburgh NIH McCarter mccarter@genetics.wustl.edu Eukaryota Nematoda Trichocephalida Trichuridae Trichuris Trichuris muris EUKARYAL Trichuris muris EST NEMATODES incomplete United Kingdom Public Ge00100 002153_GCAT 70415 10000 Univ of Edinburgh, Sanger Institute, NematodeNet Sanger Institute, Univ of Edinburgh Beowulf Genomics Blaxter M http://helios.bto.ed.ac.uk/icapb/cgi-bin/CV_out.cgi?user=blaxter Eukaryota Nematoda Trichocephalida Trichuridae Trichuris Trichuris trichiura EUKARYAL Trichuris trichiura EST NEMATODES incomplete United Kingdom Public Ge00101 002154_GCAT 36087 NematodeNet Univ of Edinburgh Blaxter M http://helios.bto.ed.ac.uk/icapb/cgi-bin/CV_out.cgi?user=blaxter Eukaryota Nematoda Spirurida Onchocercidae Wuchereria Wuchereria bancrofti EUKARYAL Wuchereria bancrofti EST NEMATODES incomplete Public Ge00102 002155_GCAT 6293 FilGenNet, Filarial Genome Project Resource Center, NematodeNet FilGenNet McCarter J mccarter@genetics.wustl.edu Eukaryota Nematoda Rhabditida Cephalobidae Zeldia Zeldia punctata EUKARYAL Zeldia punctata EST NEMATODES incomplete USA Public Ge00103 002156_GCAT 49351 NematodeNet Washington Univ McCarter J mccarter@genetics.wustl.edu Eukaryota Placozoa unclassified unclassified Trichoplax Trichoplax adhaerens EUKARYAL Trichoplax adhaerens ABI 6x Genome PLACOZOA incomplete USA Public Gi00753 002157_GCAT 10228 12874 NIH-NHGRI Eukaryota Placozoa unclassified unclassified Trichoplax Trichoplax adhaerens EUKARYAL Trichoplax adhaerens. Genome PLACOZOA incomplete USA Public Gi00793 002158_GCAT 10228 12872 50000 Joint Genome Institute, Yale Univ DOE Eukaryota Porifera Haplosclerida Chalinidae Reniera Reniera sp. JGI-2005 EUKARYAL Reniera sp JGI-2005 Genome PORIFERA incomplete International Public Gi00794 002159_GCAT 333134 Joint Genome Institute, Univ of Queensland, Univ of Alberta, Univ of Hawaii DOE Eukaryota unclassified Peronosporales unclassified Phytophthora Phytophthora capsici EUKARYAL Phytophthora capsici Genome PROTISTS-STRAMENOPILES incomplete Pathogen Agricultural, Plant Pathogen USA Public Gi01100 002160_GCAT 4784 Joint Genome Institute, NCGR DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota unclassified Peronosporales unclassified Phytophthora Phytophthora infestans EUKARYAL Phytophthora infestans T30-4 ABI 8x Genome PROTISTS-STRAMENOPILES Draft incomplete Pathogen Agricultural, Plant Pathogen Potato blight USA Public Gi00449 002161_GCAT 403677 17665 250000 AATU01000000 NCBI Broad Institute NSF Nusbaum HC chad@genome.wi.mit.edu Eukaryota unclassified Peronosporales unclassified Phytophthora Phytophthora infestans EUKARYAL Phytophthora infestans Genome PROTISTS-STRAMENOPILES incomplete Pathogen Agricultural, Plant Pathogen Potato blight United Kingdom Public Gi00583 002162_GCAT 4787 12767 NCBI, Sanger Institute Sanger Institute SCRI Berriman M mb4@sanger.ac.uk Eukaryota unclassified Peronosporales unclassified Phytophthora Phytophthora infestans EUKARYAL Phytophthora infestans EST PROTISTS-STRAMENOPILES incomplete Pathogen Agricultural, Plant Pathogen International Public Ge00105 002163_GCAT 4787 94091 NCBI, PGC, Univ of Maryland, NCSU Phytophthora Genome Consortium NCGR Mitchell T thomas_mitchell@ncsu.edu Eukaryota unclassified Peronosporales unclassified Phytophthora Phytophthora sojae EUKARYAL Phytophthora sojae Genome PROTISTS-STRAMENOPILES incomplete Pathogen Agricultural, Plant Pathogen Root rot International Public Gi00451 002166_GCAT 67593 65000 PGC Phytophthora Genome Consortium Eukaryota Streptophyta Ericales Actinidiaceae Actinidia Actinidia deliciosa EUKARYAL Actinidia deliciosa EST PLANTS-STREPTOPHYTA incomplete New Zealand Proprietary Ge00106 002167_GCAT 3627 Genesis Genesis Eukaryota Streptophyta Asparagales Alliaceae Allium Allium cepa EUKARYAL Allium cepa EST PLANTS-STREPTOPHYTA incomplete USA Public Ge00107 002168_GCAT 4679 12547 20159 TIGR, Univ of Wisconsin Univ of Wisconsin Eukaryota Streptophyta Poales Bromeliaceae Ananas Ananas comosus EUKARYAL Ananas comosus EST PLANTS-STREPTOPHYTA incomplete Australia Public Ge00108 002169_GCAT 4615 Univ of Queensland Eukaryota Streptophyta Brassicales Brassicaceae Arabidopsis Arabidopsis lyrata EUKARYAL Arabidopsis lyrata Genome PLANTS-STREPTOPHYTA incomplete USA Public Gi01101 002170_GCAT 59689 15663 230000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Streptophyta Brassicales Brassicaceae Capsella Capsella rubella EUKARYAL Capsella rubella Genome PLANTS-STREPTOPHYTA incomplete USA Public Gi01102 002171_GCAT 81985 15659 250000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota unclassified unclassified unclassified Aureococcus Aureococcus anophagefferens EUKARYAL Aureococcus anophagefferens Genome PROTISTS-STRAMENOPILES incomplete Carbon sequestration, Reduces trace metals Environmental USA Public Gi00984 002172_GCAT 44056 13500 32000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Streptophyta Poales Poaceae Avena Avena sativa EUKARYAL Avena sativa Genome PLANTS-STREPTOPHYTA incomplete USA Public Gi00045 002173_GCAT 4498 9510 16000000 7 NCBI Eukaryota unclassified Peronosporales unclassified Phytophthora Phytophthora capsici EUKARYAL Phytophthora capsici Genome PROTISTS-STRAMENOPILES incomplete Pathogen Agricultural, Plant Pathogen USA Public Gi02456 002175_GCAT 4784 Joint Genome Institute, NCGR DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota unclassified Peronosporales unclassified Phytophthora Phytophthora infestans EUKARYAL Phytophthora infestans BAC clones Genome-Regions PROTISTS-STRAMENOPILES incomplete United Kingdom Public Gi02460 002176_GCAT 4787 12767 Sanger Institute Sanger Institute SCRI Berriman M mb4@sanger.ac.uk Eukaryota Streptophyta Ericales Actinidiaceae Actinidia Actinidia deliciosa EUKARYAL Actinidia deliciosa EST PLANTS-STREPTOPHYTA incomplete New Zealand Proprietary Ge00281 002180_GCAT 3627 Genesis Genesis Eukaryota Streptophyta Poales Bromeliaceae Ananas Ananas comosus EUKARYAL Ananas comosus EST PLANTS-STREPTOPHYTA incomplete Australia Public Ge00282 002182_GCAT 4615 Univ of Queensland Eukaryota Streptophyta Brassicales Brassicaceae Arabidopsis Arabidopsis lyrata EUKARYAL Arabidopsis lyrata Genome PLANTS-STREPTOPHYTA incomplete USA Public Gi02457 002183_GCAT 59689 15628 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Streptophyta Brassicales Brassicaceae Capsella Capsella rubella EUKARYAL Capsella rubella Genome PLANTS-STREPTOPHYTA incomplete USA Public Gi02458 002184_GCAT 81985 13878 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Streptophyta Caryophyllales Amaranthaceae Beta Beta vulgaris EUKARYAL Beta vulgaris EST PLANTS-STREPTOPHYTA incomplete Germany Public Ge00109 002186_GCAT 161934 12562 Sputnik Rudd S s.rudd@gsf.de Eukaryota Streptophyta Ranunculales Ranunculaceae Aquilegia Aquilegia formosa EUKARYAL Aquilegia formosa ABI Genome PLANTS-STREPTOPHYTA incomplete Agricultural, Ecological, Evolutionary USA Public Gi01581 002187_GCAT 223430 18745 350000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Streptophyta Poales Poaceae Brachypodium Brachypodium distachyon EUKARYAL Brachypodium distachyon Bd21 Genome PLANTS-STREPTOPHYTA incomplete Agricultural, Energy production, Biotechnological, Biofuels USA Public Gi01580 002188_GCAT 15368 18703 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Streptophyta Poales Poaceae Brachypodium Brachypodium distachyon EUKARYAL Brachypodium distachyon Bd21 EST PLANTS-STREPTOPHYTA incomplete Agricultural, Energy production, Biotechnological USA Public Ge00216 002189_GCAT 15368 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Streptophyta Brassicales Brassicaceae Brassica Brassica napus EUKARYAL Brassica napus Genome PLANTS-STREPTOPHYTA incomplete International Public Gi00091 002190_GCAT 3708 12478 Univ of Minnesota, UKcrop Univ of Minnesota, Pohang Univ Nam HG nam@vision.postech.ac.kr Eukaryota Streptophyta Brassicales Brassicaceae Brassica Brassica oleracea EUKARYAL Brassica oleracea C (JBo & BoB) ABI 0.44x Genome PLANTS-STREPTOPHYTA incomplete International Public Gi00092 002191_GCAT 3712 12480 9 0 UKcrop, TIGR TIGR, Univ of Bath, Univ of Birmingham, Horticulture Research International, John Innes Centre BBSRC Trick M martin.trick@bbsrc.ac.uk Eukaryota Streptophyta Brassicales Brassicaceae Brassica Brassica rapa EUKARYAL Brassica rapa L. spp pekinensis Clone-based Genome-Regions PLANTS-STREPTOPHYTA incomplete Korea Public Gi02146 Ge00110 002192_GCAT 51351 12479 10 0 NIAB Chungnam National Univ, NIAB Eukaryota Streptophyta Brassicales Brassicaceae Brassica Brassica rapa EUKARYAL Brassica rapa pekinensis Genome PLANTS-STREPTOPHYTA incomplete USA Public Gi00094 002193_GCAT 51351 500000 Brassica.info TIGR, MIPS, NIAB Eukaryota Streptophyta Brassicales Brassicaceae Brassica Brassica rapa EUKARYAL Brassica rapa A (JBr) Genome PLANTS-STREPTOPHYTA incomplete United Kingdom Public Gi00093 002194_GCAT 3711 UKcrop Univ of Bath, Univ of Birmingham, Horticulture Research International, John Innes Centre BBSRC Trick M martin.trick@bbsrc.ac.uk Eukaryota Streptophyta Solanales Solanaceae Capsicum Capsicum annuum EUKARYAL Capsicum annuum EST PLANTS-STREPTOPHYTA incomplete Korea Public Ge00111 002195_GCAT 40321 PDRC, Sputnik PDRC Lee, S sanghyeobl@yahoo.co.kr Eukaryota Streptophyta Dicranales Ditrichaceae Ceratodon Ceratodon purpureus EUKARYAL Ceratodon purpureus EST PLANTS-STREPTOPHYTA incomplete USA Public Ge00112 002196_GCAT 3225 Washington Univ Washington Univ EST project est@watson.wustl.edu Eukaryota Chlorophyta Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii EUKARYAL Chlamydomonas reinhardtii EST PLANTS-CHLOROPHYTA incomplete USA Public Ge00113 002197_GCAT 3055 100000 17 Univ of Oklahoma, Duke Univ, Sputnik Univ of Oklahoma, Washington Univ NSF Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Eukaryota Chlorophyta Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii EUKARYAL Chlamydomonas reinhardtii EST PLANTS-CHLOROPHYTA incomplete Japan Public Ge00114 002198_GCAT 3055 12263 100000 Kazusa, Sputnik Kazusa DNA Research Institute KAZUSA chlamy@kazusa.or.jp Eukaryota Chlorophyta Mamiellales Mamiellaceae Bathycoccus Bathycoccus prasinos EUKARYAL Bathycoccus sp BAN7 Genome PLANTS-CHLOROPHYTA complete France Public Gi01791 002200_GCAT 41874 Genoscope Eukaryota unclassified unclassified unclassified Chlorarachnion Chlorarachnion reptans EUKARYAL Chlorarachnion reptans Genome PROTISTS-CERCOZOA incomplete Germany Public Gi00144 002201_GCAT 29199 Marburg Univ Marburg Univ Maier U maier@mailer.uni-marburg.de Eukaryota Streptophyta Sapindales Rutaceae Citrus Citrus sinensis EUKARYAL Citrus sinensis Washington navel Genome PLANTS-STREPTOPHYTA incomplete USA Public Gi01288 002202_GCAT 2711 9597 380000 Joint Genome Institute, Univ of California, Riverside Eukaryota Platyhelminthes Opisthorchiida Opisthorchiidae Clonorchis Clonorchis sinensis EUKARYAL Clonorchis sinensis Genome PLATYHELMINTHES incomplete Korea Public Gi01931 002555_GCAT 79923 17975 Seoul National Univ Eukaryota Streptophyta Gentianales Rubiaceae Coffea Coffea arabica EUKARYAL Coffea arabica L. EST PLANTS-STREPTOPHYTA incomplete Italy Public Ge00115 002203_GCAT 13443 1226 NCBI, Univ of Trieste Univ of Trieste Eukaryota Streptophyta Gentianales Rubiaceae Coffea Coffea arabica EUKARYAL Coffea arabica Genome PLANTS-STREPTOPHYTA complete Brazil Public Gi00168 002204_GCAT 13443 Univ of Campinas Univ of Campinas FAPESP, Embrapa/Cafe, Embrapa/Cafe lbi@ic.unicamp.br lbi@ic.unicamp.br Eukaryota Streptophyta Cycadales Cycadaceae Cycas Cycas rumphii EUKARYAL Cycas rumphii Miq EST PLANTS-STREPTOPHYTA incomplete International Public Ge00116 002205_GCAT 58031 12507 Plant Genomics Consortium, Sputnik Plant Genomics Consortium Brenner E ebrenner@nybg.org Eukaryota Phaeophyceae Ectocarpales Ectocarpaceae Ectocarpus Ectocarpus siliculosus EUKARYAL Ectocarpus siliculosus Genome PROTISTS-PHAEOPHYCEAE incomplete France Public Gi01103 002206_GCAT 2880 Institute de la Genomique Marine, Genoscope Eukaryota Bacillariophyta unclassified Bacillariaceae Fragilariopsis Fragilariopsis cylindrus EUKARYAL Fragilariopsis cylindrus CCMP 1102 Genome PROTISTS-BACILLARIOPHYTA incomplete Psychrophile Biotechnological, Ecological None Aquatic USA Public Gi01575 002207_GCAT 186039 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota unclassified Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi EUKARYAL Emiliania huxleyi CCMP 1516 ABI 2x Genome PROTISTS-HAPTOPHYCEAE incomplete USA 65 Public Gi00219 002208_GCAT 280463 12471 220000 Joint Genome Institute, California State Univ DOE Read B http://www.csusm.edu/Biology/faculty_new/read.html Eukaryota unclassified Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi EUKARYAL Emiliania huxleyi CCMP371 EST PROTISTS-HAPTOPHYCEAE incomplete USA Public Ge00117 002209_GCAT 2903 Univ of Iowa Univ of Iowa NSF Bhattacharya D dbhattac@blue.weeg.uiowa.edu Eukaryota unclassified Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi EUKARYAL Emiliania huxleyi 1516 EST PROTISTS-HAPTOPHYCEAE incomplete USA Public Ge00242 002843_GCAT 2903 114 3000 California State Univ San Marcos Eukaryota unclassified Cyanidiales Cyanidiaceae Galdieria Galdieria sulphuraria EUKARYAL Galdieria sulphuraria ABI Genome PROTISTS-RHODOPHYTA incomplete Thermophile Biotechnological None Sulfur spring USA Public Gi00266 002210_GCAT 130081 13023 Michigan State Univ NSF Weber AP aweber@msu.edu Eukaryota unclassified Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi EUKARYAL Emiliania huxleyi EST PROTISTS-HAPTOPHYCEAE incomplete USA Public Ge00118 002211_GCAT 2903 Univ of Southampton Brookhaven Natl Lab DOE, OBER Tyrrell T T.Tyrrell@soc.soton.ac.uk Eukaryota Annelida Terebellida Alvinellidae Alvinella Alvinella pompejana EUKARYAL Alvinella pompejana EST ANNELIDA incomplete USA Public Ge00119 002212_GCAT 6376 Joint Genome Institute, Scripps Research Institute, Univ of Delaware, Univ of Oregon DOE Eukaryota Annelida Rhynchobdellida Glossiphoniidae Helobdella Helobdella robusta EUKARYAL Helobdella robusta Genome ANNELIDA incomplete USA Public Gi00799 002213_GCAT 6412 Joint Genome Institute, Univ of California, Berkeley, Univ of Texas, Univ of Missouri, St Louis, Rutgers Univ, Univ of Maryland, UCSD, Sapporo Univ DOE Eukaryota Annelida Capitellida Capitellidae Capitella Capitella sp. I ECS-2004 EUKARYAL Capitella sp. I ESC-2004 ABI Genome ANNELIDA Draft incomplete USA Public Gi00800 002214_GCAT 283909 240000 Joint Genome Institute DOE Boore J jlboore@lbl.gov Eukaryota Streptophyta Myrtales Myrtaceae Eucalyptus Eucalyptus dunnii EUKARYAL Eucalyptus dunnii EST PLANTS-STREPTOPHYTA incomplete New Zealand Proprietary Ge00120 002215_GCAT 183821 Genesis Genesis Strabala TJ t.strabala@genesis.co.nz Eukaryota Streptophyta Myrtales Myrtaceae Eucalyptus Eucalyptus grandis EUKARYAL Eucalyptus grandis EST PLANTS-STREPTOPHYTA incomplete New Zealand Proprietary Ge00121 002216_GCAT 71139 Genesis Genesis Strabala TJ t.strabala@genesis.co.nz Eukaryota Streptophyta Myrtales Myrtaceae Eucalyptus Eucalyptus grandis EUKARYAL Eucalyptus grandis EST PLANTS-STREPTOPHYTA incomplete Brazil Public Ge00122 002217_GCAT 71139 FORESTs FAPESP dos Santos RV bioinfo@forests.esalq.usp.br Eukaryota Streptophyta Myrtales Myrtaceae Eucalyptus Eucalyptus obliqua EUKARYAL Eucalyptus obliqua EST PLANTS-STREPTOPHYTA incomplete New Zealand Proprietary Ge00123 002218_GCAT 36592 Genesis Genesis Strabala TJ t.strabala@genesis.co.nz Eukaryota Streptophyta Asterales Asteraceae Helianthus Helianthus annuus EUKARYAL Helianthus annuus EST PLANTS-STREPTOPHYTA incomplete USA Public Ge00124 002219_GCAT 4232 12865 3000000 TIGR, Univ of California, Davis, Sputnik Univ of California, Davis Eukaryota Streptophyta Poales Poaceae Hordeum Hordeum vulgare EUKARYAL Hordeum vulgare var. distichum Genome PLANTS-STREPTOPHYTA incomplete International Public Gi00300 002220_GCAT 4513 9511 5000000 NCBI, CUGI, UK CropNet, NABGP, UKcrop, TIGR, Sputnik Clemson Univ, Scottish Crop Research Institute, PGRC, Univ of Arizona Waugh R rwaugh@scri.sari.ac.uk Eukaryota Streptophyta Myrtales Myrtaceae Eucalyptus Eucalyptus globulus EUKARYAL Eucalyptus globulus ABI 5x Genome PLANTS-STREPTOPHYTA incomplete International Public Gi01115 002221_GCAT 34317 12503 International Eucalyptus Genome Consortium Eukaryota Streptophyta Myrtales Myrtaceae Eucalyptus Eucalyptus raveretiana EUKARYAL Eucalyptus Genome PLANTS-STREPTOPHYTA incomplete Australia Public Gi00246 002222_GCAT 3932 AGRF Australian Genome Research Facility, CSIRO, Univ of Queensland, Univ of Melbourne, Monash Univ, Univ of Tasmania, Southern Cross Univ, CRC for Sustainable Production Forestry Mitchelson K Eukaryota Streptophyta Poales Poaceae Eragrostis Eragrostis pilosa EUKARYAL Eragrostis pilosa EST PLANTS-STREPTOPHYTA incomplete International Public Ge00125 002223_GCAT 208273 Cornell Univ, Debre Zeit Research Center Eukaryota Streptophyta Poales Poaceae Eragrostis Eragrostis tef EUKARYAL Eragrostis tef EST PLANTS-STREPTOPHYTA incomplete International Public Ge00126 002224_GCAT 110835 16857 730000 Cornell Univ, Debre Zeit Research Center Eukaryota Streptophyta Poales Poaceae Festuca Festuca idahoensis x Festuca ovina EUKARYAL Festuca spp. EST PLANTS-STREPTOPHYTA incomplete New Zealand Proprietary Ge00127 002225_GCAT 4605 Genesis Genesis Eukaryota Streptophyta Fabales Fabaceae Glycine Glycine max EUKARYAL Glycine max Genome PLANTS-STREPTOPHYTA incomplete USA Public Gi00280 002226_GCAT 3847 1200000 Gramene, Washington Univ, TIGR, Sputnik USDA-ARS, Iowa State Univ, Cornell Univ, Washington Univ WASHU est@watson.wustl.edu Eukaryota Streptophyta Fabales Fabaceae Glycine Glycine max EUKARYAL Glycine max cultivar Williams 82 ABI 8x Genome PLANTS-STREPTOPHYTA incomplete Agricultural USA Public Gi02159 002811_GCAT 3847 19861 Joint Genome Institute, Univ of Missouri, Purdue Univ, USDA Richardson P microbes@cuba.jgi-psf.org Eukaryota Streptophyta Fabales Fabaceae Glycine Glycine max EUKARYAL Glycine max EST PLANTS-STREPTOPHYTA incomplete USA Public Ge00128 002227_GCAT 3847 12367 Univ of Illinois, Sputnik Univ of Illinois at Urbana-Champaign NSF Vodkin LO http://www.cropsci.uiuc.edu/faculty/vodkin/ Eukaryota Streptophyta Malpighiales Euphorbiaceae Manihot Manihot esculenta EUKARYAL Manihot esculenta Genome PLANTS-STREPTOPHYTA incomplete Agricultural, Energy production, Biotechnological USA Public Gi01584 002228_GCAT 3983 17471 760000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Streptophyta Malpighiales Euphorbiaceae Manihot Manihot esculenta EUKARYAL Manihot esculenta EST PLANTS-STREPTOPHYTA complete complete Agricultural, Energy production, Biotechnological France Public Ge00230 002819_GCAT 3983 13644 11954 Univ de Perpignan Eukaryota Streptophyta Malvales Malvaceae Gossypium Gossypium hirsutum EUKARYAL Gossypium hirsutum Genome PLANTS-STREPTOPHYTA incomplete Agricultural, Energy production, Biotechnological USA Public Gi01582 002229_GCAT 3635 2100000 NCBI Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Streptophyta Malvales Malvaceae Gossypium Gossypium arboreum EUKARYAL Gossypium arboreum EST PLANTS-STREPTOPHYTA incomplete USA Public Ge00129 002230_GCAT 29729 12946 CUGI, Cotton Genome Center, TIGR, Sputnik Clemson Univ NSF Wilkins TA tawilkins@ucdavis.edu Eukaryota Streptophyta Malvales Malvaceae Gossypium Gossypium hirsutum EUKARYAL Gossypium hirsutum L Maxxa Maxxa BAC clones Genome-Regions PLANTS-STREPTOPHYTA incomplete USA Public Gi00281 002231_GCAT 3635 13320 2118000 NCBI, CUGI, Cotton Genome Center, Acecot Clemson Univ, Univ of California, Davis, Texas A&M Univ, Iowa State Univ Eukaryota Streptophyta Malvales Malvaceae Gossypium Gossypium hirsutum EUKARYAL Gossypium hirsutum L Maxxa Maxxa EST PLANTS-STREPTOPHYTA incomplete USA Public Ge00274 002984_GCAT 3635 12541 177182 NCBI, CUGI, Cotton Genome Center, Arizona Genomics Institute Univ of California, Davis, Clemson Univ, Arizona Genomics Institute NSF Wilkins TA tawilkins@ucdavis.edu Eukaryota Streptophyta Gentianales Rubiaceae Hedyotis Hedyotis tenelliflora EUKARYAL Hedyotis sp. EST PLANTS-STREPTOPHYTA incomplete International Public Ge00223 002232_GCAT 58416 Plant Genomics Consortium Plant Genomics Consortium Motley T tmotley@nybg.org Eukaryota Chordata unclassified Branchiostomidae Branchiostoma Branchiostoma floridae EUKARYAL Branchiostoma floridae Genome CHORDATA-CEPHALOCHORDATA incomplete Marine USA Public Gi00774 002233_GCAT 7739 20249 600000 Joint Genome Institute Joint Genome Institute DOE Eukaryota Chordata unclassified Branchiostomidae Branchiostoma Branchiostoma floridae EUKARYAL Branchiostoma floridae. Genome CHORDATA-CEPHALOCHORDATA incomplete United Kingdom Public Gi00775 002234_GCAT 7739 Sanger Institute Sanger Institute Eukaryota Chordata unclassified Branchiostomidae Branchiostoma Branchiostoma floridae EUKARYAL Branchiostoma floridae Genome CHORDATA-CEPHALOCHORDATA incomplete Japan Public Gi01792 002235_GCAT 7739 RIKEN MEXT Eukaryota Cnidaria Scleractinia Poritidae Porites Porites lobata EUKARYAL Porites lobata Genome CNIDARIA incomplete Aquatic USA Public Gi01480 002236_GCAT 104759 Washington Univ Washington Univ NIH-NHGRI Clifton S http://genome.wustl.edu/Bio/email_data.cgi?staff=Sandra%20Clifton Eukaryota Cnidaria Scleractinia Faviidae Montastraea Montastraea faveolata EUKARYAL Montastraea faveolata EST CNIDARIA incomplete None USA Public Ge00217 002237_GCAT 48498 32000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Cnidaria Scleractinia Acroporidae Acropora Acropora palmata EUKARYAL Acropora palmata EST CNIDARIA incomplete None USA Public Ge00218 002238_GCAT 6131 32000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Cnidaria Scleractinia Acroporidae Acropora Acropora millepora EUKARYAL Acropora millepora Genome CNIDARIA incomplete Aquatic USA Public Gi01481 002239_GCAT 45264 Washington Univ Washington Univ NIH-NHGRI Eukaryota Cnidaria Scleractinia Acroporidae Acropora Acropora palmata EUKARYAL Acropora palmata Genome CNIDARIA incomplete Aquatic USA Public Gi01482 002240_GCAT 6131 Washington Univ Washington Univ NIH-NHGRI Clifton S http://genome.wustl.edu/Bio/email_data.cgi?staff=Sandra%20Clifton Eukaryota Cnidaria Hydroida Hydridae Hydra Hydra magnipapillata EUKARYAL Hydra magnipapillata ABI 4x Genome CNIDARIA incomplete USA Public Gi00754 002241_GCAT 6085 12876 TIGR NIH-NHGRI Eukaryota Cnidaria Hydroida Hydridae Hydra Hydra magnipapillata EUKARYAL Hydra magnipapillata 105 EST CNIDARIA incomplete USA Public Ge00130 002242_GCAT 6085 12875 UCI, Sputnik Univ of California, Irvine NSF Bode HR http://devcell.bio.uci.edu/html/Faculty%20CVs/bode.html Eukaryota Cnidaria Hydroida Hydractiniidae Hydractinia Hydractinia symbiolongicarpus EUKARYAL Hydractinia symbiolongicarpus Genome CNIDARIA incomplete USA Public Gi01104 002243_GCAT 13093 800000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Streptophyta Asterales Asteraceae Lactuca Lactuca sativa EUKARYAL Lactuca sativa EST PLANTS-STREPTOPHYTA incomplete USA Public Ge00131 002245_GCAT 4236 12869 TIGR, Univ of California, Davis, Sputnik Univ of California, Davis Eukaryota Streptophyta Poales Poaceae Lolium Lolium perenne EUKARYAL Lolium perenne Genome PLANTS-STREPTOPHYTA incomplete New Zealand Proprietary Gi00336 002246_GCAT 4522 15516 2300000 ViaLactia Elborough K Eukaryota Streptophyta Poales Poaceae Lolium Lolium multiflorum x Lolium perenne EUKARYAL Lolium spp. EST PLANTS-STREPTOPHYTA incomplete New Zealand Proprietary Ge00132 002247_GCAT 4520 Genesis Genesis Eukaryota Streptophyta Fabales Fabaceae Lotus Lotus japonicus EUKARYAL Lotus japonicus Genome PLANTS-STREPTOPHYTA incomplete Japan Public Gi00574 002248_GCAT 34305 11770 450000 6 0 Kazusa, TIGR, Sputnik Kazusa DNA Research Institute Eukaryota Streptophyta Fabales Fabaceae Lotus Lotus japonicus EUKARYAL Lotus japonicus EST PLANTS-STREPTOPHYTA incomplete Japan Public Ge00134 002249_GCAT 34305 13205 74472 Kazusa Kazusa DNA Research Institute Tabata S tabata@kazusa.or.jp Eukaryota Streptophyta Solanales Solanaceae Solanum Solanum lycopersicum EUKARYAL Solanum (Lycopersicon) lycopersicum (esculentum) Genome PLANTS-STREPTOPHYTA incomplete International Public Gi00338 002250_GCAT 4081 119 12 NCBI, TIGR, Cornell Univ, Sputnik International Collaboration NSF Tanksley S sdt4@cornell.edu Eukaryota Streptophyta Solanales Solanaceae Solanum Solanum lycopersicum EUKARYAL Lycopersicon esculentum cv. Heinz 1706 Genome PLANTS-STREPTOPHYTA incomplete USA Public Gi00337 002251_GCAT 4081 9509 12 CUGI Clemson Univ Eukaryota Streptophyta Rosales Rosaceae Malus Malus x domestica EUKARYAL Malus domestica EST PLANTS-STREPTOPHYTA incomplete USA Public Ge00135 002252_GCAT 3750 12906 155096 Univ of Illinois at Urbana-Champaign Univ of Illinois at Urbana-Champaign Eukaryota Streptophyta Rosales Rosaceae Malus Malus sp. EUKARYAL Malus spp. EST PLANTS-STREPTOPHYTA incomplete New Zealand Proprietary Ge00136 002253_GCAT 3751 Genesis Genesis, HortResearch Eukaryota Streptophyta Fabales Fabaceae Medicago Medicago sativa EUKARYAL Medicago sativa Genome PLANTS-STREPTOPHYTA incomplete USA Public Gi00348 002254_GCAT 3879 NCBI USDA-ARS, Kansas State Univ Eukaryota Streptophyta Fabales Fabaceae Medicago Medicago truncatula EUKARYAL Medicago truncatula EST PLANTS-STREPTOPHYTA incomplete France Public Ge00137 002255_GCAT 3880 10746 236854 Genoscope Genoscope Eukaryota Streptophyta Fabales Fabaceae Medicago Medicago truncatula EUKARYAL Medicago truncatula BAC clones Genome PLANTS-STREPTOPHYTA incomplete International Public Gi00349 002256_GCAT 3880 10791 500000 Noble Foundation, Univ of Oklahoma, Medicago.org, Sputnik, TIGR TIGR, Univ of Oklahoma, Genoscope, Sanger Institute Noble Foundation May GD gdmay@noble.org Eukaryota Streptophyta Fabales Fabaceae Medicago Medicago truncatula EUKARYAL Medicago truncatula LGIII Genome PLANTS-STREPTOPHYTA incomplete USA Public Gi00350 002257_GCAT 3880 Texas A&M Univ, TIGR, Medicago.org, Sputnik Texas A&M Univ NSF Eukaryota Streptophyta Caryophyllales Aizoaceae Mesembryanthemum Mesembryanthemum crystallinum EUKARYAL Mesembryanthemum crystallinum EST PLANTS-STREPTOPHYTA incomplete USA Public Ge00138 002258_GCAT 3544 12909 390000 TIGR, Univ of Arizona, Sputnik Univ of Nevada, Univ of Arizona, Oklahoma State Univ NSF Eukaryota Chlorophyta Mamiellales Mamiellaceae Micromonas Micromonas pusilla EUKARYAL Micromonas pusilla NOUM17, RCC 299 Genome PLANTS-CHLOROPHYTA incomplete Carbon dioxide fixation, Carbon sequestration Environmental, Ecological None Aquatic Equatorial Pacific USA Public Gi00985 002259_GCAT 38833 15676 15000 NCBI Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Chlorophyta Mamiellales Mamiellaceae Micromonas Micromonas pusilla EUKARYAL Micromonas pusilla CCMP490(RCC 114) Genome PLANTS-CHLOROPHYTA incomplete Carbon dioxide fixation, Carbon sequestration Environmental, Ecological None Aquatic East Coast USA Public Gi00986 002260_GCAT 38833 15678 15000 NCBI Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Streptophyta Lamiales Phrymaceae Mimulus Mimulus guttatus EUKARYAL Mimulus guttatus Genome PLANTS-STREPTOPHYTA incomplete USA Public Gi01105 002261_GCAT 4155 13880 430000 NCBI, Mimulus Resource Center, Duke Univ Joint Genome Institute, Duke Univ DOE Willis J jwillis@duke.edu Eukaryota Streptophyta Lamiales Orobanchaceae Triphysaria Triphysaria versicolor EUKARYAL Triphysaria versicolor EST PLANTS-STREPTOPHYTA incomplete incomplete Facultative parasite Agricultural USA Public Ge00275 003069_GCAT 64093 Virginia Tech NSF Westwood J westwood@vt.edu Eukaryota Streptophyta Lamiales Orobanchaceae Striga Striga hermonthica EUKARYAL Striga hermonthica EST PLANTS-STREPTOPHYTA incomplete incomplete Obligate parasite USA Public Ge00276 003070_GCAT 68872 Virginia Tech NSF Westwood J westwood@vt.edu Eukaryota Streptophyta Lamiales Orobanchaceae Orobanche Orobanche ramosa EUKARYAL Orobanche ramosa EST PLANTS-STREPTOPHYTA incomplete incomplete USA Public Ge00277 003071_GCAT 46066 Virginia Tech NSF Westwood J westwood@vt.edu Eukaryota Streptophyta Fabales Fabaceae Chamaecrista Chamaecrista fasciculata EUKARYAL Chamaecrista fasciculata EST PLANTS-STREPTOPHYTA incomplete incomplete USA Public Ge00278 003072_GCAT 53854 Carleton College NSF Singer S ssinger@carleton.edu Eukaryota Streptophyta Lamiales Phrymaceae Mimulus Mimulus guttatus EUKARYAL Mimulus guttatus Genome PLANTS-STREPTOPHYTA incomplete USA Public Gi01946 002570_GCAT 4155 CUGI CUGI NSF Eukaryota Streptophyta Lamiales Phrymaceae Mimulus Mimulus lewisii EUKARYAL Mimulus lewisii Genome PLANTS-STREPTOPHYTA incomplete USA Public Gi01947 002571_GCAT 69919 CUGI CUGI NSF Eukaryota Streptophyta Ranunculales Ranunculaceae Aquilegia Aquilegia formosa EUKARYAL Aquilegia formosa Genome PLANTS-STREPTOPHYTA incomplete USA Public Gi01948 002572_GCAT 223430 CUGI CUGI NSF Eukaryota unclassified Choanoflagellida Codonosigidae Monosiga Monosiga ovata EUKARYAL Monosiga ovata ABI 6x Genome PROTISTS incomplete Aquatic USA Public Gi00752 002262_GCAT 81526 12871 NCBI, Washington Univ Washington Univ NIH-NHGRI Eukaryota unclassified Choanoflagellida Codonosigidae Monosiga Monosiga brevicollis EUKARYAL Monosiga brevicollis MX1 ABI Genome PROTISTS incomplete Aquatic USA Public Gi01376 002263_GCAT 431895 19045 NCBI, Joint Genome Institute Joint Genome Institute DOE Eukaryota Streptophyta Zingiberales Musaceae Musa Musa acuminata EUKARYAL Musa acuminata calcutta 4 Genome PLANTS-STREPTOPHYTA incomplete International Public Gi00379 002264_GCAT 4641 15720 NCBI, INIBAP IPGRI Eukaryota Streptophyta Zingiberales Musaceae Musa Musa acuminata EUKARYAL Musa acuminata EST PLANTS-STREPTOPHYTA incomplete USA Public Ge00262 002863_GCAT 4641 6376 J Craig Venter Institute Town C cdtown@jcvi.org Eukaryota Ascomycota Hypocreales Clavicipitaceae Neotyphodium Neotyphodium coenophialum EUKARYAL Neotyphodium coenophialum EST FUNGI-ASCOMYCOTA incomplete Australia Public Ge00139 002265_GCAT 5047 La Trobe Univ Eukaryota Ascomycota Hypocreales Clavicipitaceae Neotyphodium Neotyphodium lolii EUKARYAL Neotyphodium lolii EST FUNGI-ASCOMYCOTA incomplete Australia Public Ge00140 002266_GCAT 73839 La Trobe Univ Eukaryota Streptophyta Solanales Solanaceae Nicotiana Nicotiana benthamiana EUKARYAL Nicotiana benthamiana EST PLANTS-STREPTOPHYTA incomplete USA Public Ge00141 002267_GCAT 4100 12911 North Carolina State Univ Eukaryota Streptophyta Solanales Solanaceae Nicotiana Nicotiana tabacum EUKARYAL Nicotiana tabacum (Burley type) TN86 EST PLANTS-STREPTOPHYTA incomplete Agricultural European Consortium Public Ge00210 002268_GCAT 4097 16344 ESTobacco ATC, Altadis ESTobacco http://www.estobacco.info/contacts.html Eukaryota Streptophyta Solanales Solanaceae Nicotiana Nicotiana tabacum EUKARYAL Nicotiana tabacum (Burley type) Burley 21 EST PLANTS-STREPTOPHYTA incomplete Agricultural European Consortium Public Ge00211 002269_GCAT 4097 ESTobacco ATC, Altadis ESTobacco http://www.estobacco.info/contacts.html Eukaryota Streptophyta Solanales Solanaceae Nicotiana Nicotiana tabacum EUKARYAL Nicotiana tabacum (Flue-cured type) K326 EST PLANTS-STREPTOPHYTA incomplete Agricultural European Consortium Public Ge00212 002270_GCAT 4097 ESTobacco ATC, Altadis ESTobacco http://www.estobacco.info/contacts.html Eukaryota Streptophyta Solanales Solanaceae Nicotiana Nicotiana tabacum EUKARYAL Nicotiana tabacum BY-2 EST PLANTS-STREPTOPHYTA incomplete Agricultural Japan Public Ge00213 002271_GCAT 4097 13237 RIKEN RIKEN Matsuoka K BY2@psc.riken.go.jp Eukaryota Streptophyta Poales Poaceae Oryza Oryza sativa EUKARYAL Oryza sativa ssp. japonica c.v. Nipponbare ABI Genome PLANTS-STREPTOPHYTA Quality Draft China Public Gi02164 002822_GCAT 39947 13139 30957 12 0 AACV00000000 Integr8 Beijing Genomics Institute Yu J junyu@genomics.org.cn Eukaryota Streptophyta Poales Poaceae Oryza Oryza sativa EUKARYAL Oryza sativa Nakdong EST PLANTS-STREPTOPHYTA complete complete International Public Ge00142 002273_GCAT 4530 13185 29000 Arizona Genomics Institute Arizona Genomics Institute, Myongji Univ Eukaryota Streptophyta Poales Poaceae Oryza Oryza sativa EUKARYAL Oryza sativa EST PLANTS-STREPTOPHYTA incomplete USA Proprietary Ge00143 002274_GCAT 4530 Monsanto Monsanto rice.webmaster rice.webmaster@rice-research.org Eukaryota Chlorophyta Mamiellales Mamiellaceae Ostreococcus Ostreococcus sp. RCC420 EUKARYAL Ostreococcus sp. EST PLANTS-CHLOROPHYTA incomplete USA Public Ge00144 002276_GCAT 70447 Joint Genome Institute, UCSB DOE Palenik B http://sio.ucsd.edu/Profile/?who=bpalenik Eukaryota Bacillariophyta Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum EUKARYAL Phaeodactylum tricornutum CCAP1055/1 ABI 9.6x Genome PROTISTS-BACILLARIOPHYTA incomplete Aquatic, Fresh water Monoclonal culture derived from a fusiform cell in May 2003 from strain CCMP632 USA Public Gi00817 002277_GCAT 2850 13152 30000 10010 33 0 Joint Genome Institute Joint Genome Institute DOE Eukaryota Bacillariophyta Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum EUKARYAL Phaeodactylum tricornutum Bohlin clone CCMP632 EST PROTISTS-BACILLARIOPHYTA incomplete Aquatic, Fresh water India Public Ge00233 002825_GCAT 2850 13305 89000 Avesthagen Eukaryota Streptophyta Poales Poaceae Panicum Panicum virgatum EUKARYAL Panicum virgatum EST PLANTS-STREPTOPHYTA incomplete Agricultural USA Public Ge00214 002278_GCAT 38727 17451 11990 NCBI Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Streptophyta Fabales Fabaceae Phaseolus Phaseolus coccineus EUKARYAL Phaseolus coccineus EST PLANTS-STREPTOPHYTA incomplete USA Public Ge00145 002279_GCAT 3886 12925 UCLA UCLA Goldberg B http://www.mcdb.ucla.edu/Research/Goldberg/ Eukaryota Streptophyta Fabales Fabaceae Phaseolus Phaseolus vulgaris EUKARYAL Phaseolus vulgaris Genome PLANTS-STREPTOPHYTA incomplete USA Public Gi00446 002280_GCAT 3885 12933 630000 BeanGenes N. Dakota State Univ McClean P mcclean@beangenes.cws.ndsu.nodak.edu Eukaryota Streptophyta Funariales Funariaceae Physcomitrella Physcomitrella patens EUKARYAL Physcomitrella patens EST PLANTS-STREPTOPHYTA incomplete Japan Public Ge00146 002281_GCAT 3218 12939 15883 National Institute of Genetics, Japan National Institute of Genetics, Japan Eukaryota Streptophyta Funariales Funariaceae Physcomitrella Physcomitrella patens EUKARYAL Physcomitrella patens EST PLANTS-STREPTOPHYTA incomplete USA Public Ge00147 002282_GCAT 3218 Washington Univ, Sputnik Washington Univ EST project est@watson.wustl.edu Eukaryota Streptophyta Funariales Funariaceae Physcomitrella Physcomitrella patens EUKARYAL Physcomitrella patens EST PLANTS-STREPTOPHYTA incomplete Japan Public Ge00234 002826_GCAT 3218 12939 15800 PHYSCObase NIG Eukaryota Streptophyta Funariales Funariaceae Physcomitrella Physcomitrella patens EUKARYAL Physcomitrella patens EST PLANTS-STREPTOPHYTA incomplete United Kingdom Public Ge00148 002283_GCAT 3218 Univ of Leeds, Sputnik Univ of Leeds BBSRC Knight C gen6ck@leeds.ac.uk Eukaryota Streptophyta Funariales Funariaceae Physcomitrella Physcomitrella patens EUKARYAL Physcomitrella. patens Genome PLANTS-STREPTOPHYTA incomplete USA Public Gi00768 002284_GCAT 3218 13064 511000 27 0 NCBI Joint Genome Institute, Univ of California, Berkeley DOE Mishler BD http://ucjeps.berkeley.edu/people/mishler.html Eukaryota Streptophyta Coniferales Pinaceae Pinus Pinus radiata EUKARYAL Pinus radiata EST PLANTS-STREPTOPHYTA incomplete New Zealand Proprietary Ge00149 002285_GCAT 3347 Genesis Genesis Strabala TJ t.strabala@genesis.co.nz Eukaryota Streptophyta Coniferales Pinaceae Pinus Pinus taeda EUKARYAL Pinus taeda EST PLANTS-STREPTOPHYTA incomplete USA Public Ge00150 002286_GCAT 3352 Univ of Minnesota, TIGR, Sputnik North Carolina State Univ, Univ of Minnesota, Institute of Forest Genetics DOE UMN pipeline@mail.ahc.umn.edu Eukaryota Streptophyta Caryophyllales Plumbaginaceae Plumbago Plumbago zeylanica EUKARYAL Plumbago zeylanica EST PLANTS-STREPTOPHYTA incomplete USA Public Ge00151 002287_GCAT 76149 12942 Univ of Oklahoma Univ of Oklahoma Roe B broe@ou.edu Eukaryota Cnidaria Hydroida Hydractiniidae Podocoryne Podocoryne carnea EUKARYAL Podocoryne carnea EST CNIDARIA incomplete USA Public Ge00152 002288_GCAT 6096 UCI, Sputnik Univ of California, Irvine NSF Bode HR http://devcell.bio.uci.edu/html/Faculty%20CVs/bode.html Eukaryota Streptophyta Sapindales Rutaceae Poncirus Poncirus trifoliata EUKARYAL Poncirus trifoliata ABI 9x Genome PLANTS-STREPTOPHYTA incomplete USA Public Gi01289 002289_GCAT 37690 10879 U.S. Citrus Genomics USDA Eukaryota Streptophyta Malpighiales Salicaceae Populus Populus tremula x Populus tremuloides EUKARYAL Populus tremula x tremuloides EST PLANTS-STREPTOPHYTA incomplete Sweden Public Ge00153 002290_GCAT 47664 13255 PolulusDB, Sputnik Swedish Univ of Agricultural Sciences, Centre for Forest Biotechnology, Umea Univ, Royal Institute of Technology, Stockholm Bhalerao R rupali.bhalerao@plantphys.umu.se Eukaryota Streptophyta Malpighiales Salicaceae Populus Populus deltoides EUKARYAL Populus trichocarpa x deltoides EST PLANTS-STREPTOPHYTA incomplete France Public Ge00154 002291_GCAT 3696 PoplarDB INRA Martin F fmartin@nancy.inra.fr Eukaryota unclassified Bangiales Bangiaceae Porphyra Porphyra yezoensis EUKARYAL Porphyra yezoensis EST PROTISTS-RHODOPHYTA incomplete Japan Public Ge00155 002293_GCAT 2788 9503 Kazusa, Sputnik Kazusa DNA Research Institute Kazusa porphyra@kazusa.or.jp Eukaryota Streptophyta Rosales Rosaceae Prunus Prunus dulcis EUKARYAL Prunus dulcis EST PLANTS-STREPTOPHYTA incomplete USA Public Ge00156 002294_GCAT 3755 12944 CUGI Clemson Univ Eukaryota Streptophyta Rosales Rosaceae Prunus Prunus persica EUKARYAL Prunus persica EST PLANTS-STREPTOPHYTA incomplete USA Public Ge00157 002295_GCAT 3760 12949 CUGI, Sputnik Clemson Univ Eukaryota Streptophyta Malpighiales Euphorbiaceae Ricinus Ricinus communis EUKARYAL Ricinus communis Hale ABI 4x Genome PLANTS-STREPTOPHYTA Draft incomplete USA Public Gi01290 002296_GCAT 3988 16585 10 0 AASG02000000 NCBI, TIGR TIGR NIH-NIAID Eukaryota Streptophyta Poales Poaceae Saccharum Saccharum hybrid cultivar EUKARYAL Saccharum sp. EST PLANTS-STREPTOPHYTA incomplete Brazil Public Ge00158 002297_GCAT 128810 UNICAMP Univ of Campinas FAPESP Arruda P parruda@unicamp.br Eukaryota Streptophyta Poales Poaceae Secale Secale cereale EUKARYAL Secale cereale EST PLANTS-STREPTOPHYTA incomplete USA Public Ge00159 002298_GCAT 4550 12981 9293 TIGR, ITEC, Sputnik USDA TIGR tgi@tigr.org Eukaryota Streptophyta Selaginellales Selaginellaceae Selaginella Selaginella moellendorffii EUKARYAL Selaginella moellendorfii ABI Genome PLANTS-STREPTOPHYTA incomplete USA Public Gi00760 002299_GCAT 88036 13078 100000 NCBI Joint Genome Institute, Purdue Univ DOE Banks K kbanks@ecn.purdue.edu Eukaryota Streptophyta Selaginellales Selaginellaceae Selaginella Selaginella moellendorffii EUKARYAL Selaginella moellendorfii EST PLANTS-STREPTOPHYTA complete complete USA Public Ge00264 002865_GCAT 88036 16100 2181 NCBI Purdue Univ Eukaryota Streptophyta Solanales Solanaceae Solanum Solanum tuberosum EUKARYAL Solanum tuberosum EST PLANTS-STREPTOPHYTA incomplete complete USA Public Ge00160 002300_GCAT 4113 12983 61940 NCBI, TIGR, TIGR, Berkeley Univ, Genome Canada, Sputnik TIGR, Univ of California, Berkeley, Cornell Univ, Univ of Minnesota, Univ of Wisconsin, Genome Canada NSF Baker B bbaker@socrates.berkeley.edu Eukaryota Streptophyta Solanales Solanaceae Solanum Solanum tuberosum EUKARYAL Solanum tuberosum Genome PLANTS-STREPTOPHYTA incomplete International Public Gi01528 002301_GCAT 4113 13297 NCBI, PGSC International Consortium Bachem C http://www.potatogenome.net/contacts.htm Eukaryota Streptophyta Solanales Solanaceae Solanum Solanum bulbocastanum EUKARYAL Solanum bulbocastanum Genome PLANTS-STREPTOPHYTA incomplete None USA Public Gi01943 002567_GCAT 147425 17441 12 0 NCBI TIGR Eukaryota Streptophyta Solanales Solanaceae Solanum Solanum demissum EUKARYAL Solanum demissum Genome PLANTS-STREPTOPHYTA incomplete None USA Public Gi01944 002568_GCAT 50514 17439 12 0 NCBI TIGR Eukaryota Streptophyta Poales Poaceae Sorghum Sorghum bicolor EUKARYAL Sorghum bicolor EST PLANTS-STREPTOPHYTA incomplete USA Public Ge00161 002302_GCAT 4558 10786 NCBI, TIGR, Univ of Georgia, Sputnik Univ of Georgia NSF Paterson A paterson@uga.edu Eukaryota Streptophyta Poales Poaceae Sorghum Sorghum bicolor EUKARYAL Sorghum bicolor Genome PLANTS-STREPTOPHYTA incomplete USA Public Gi00987 002303_GCAT 4558 10 0 Orion Genomics NSF Bedell JA jbedell@oriongenomics.com Eukaryota Streptophyta Poales Poaceae Sorghum Sorghum hybrid cultivar EUKARYAL Sorghum bicolor ABI 4x Genome PLANTS-STREPTOPHYTA incomplete USA Public Gi01107 002304_GCAT 4557 13876 760000 NCBI, Phytozome Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Streptophyta Brassicales Brassicaceae Thellungiella Thellungiella halophila EUKARYAL Thellungiella halophila Genome PLANTS-STREPTOPHYTA incomplete Psychrotolerant Agricultural, Biotechnological None USA Public Gi01577 002305_GCAT 98038 18765 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Streptophyta Malvales Malvaceae Theobroma Theobroma cacao EUKARYAL Theobroma cacao Genome PLANTS-STREPTOPHYTA incomplete Agricultural USA Public Gi01529 002306_GCAT 3641 16875 SHRS USDA Schnell RJ http://www.ars.usda.gov/pandp/people/people.htm?personid=5003 Eukaryota Streptophyta Lamiales Orobanchaceae Triphysaria Triphysaria versicolor EUKARYAL Triphysaria versicolor Genome PLANTS-STREPTOPHYTA incomplete Parasite USA Public Gi01291 002307_GCAT 64093 13879 1200000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Streptophyta Poales Poaceae Triticum Triticum aestivum EUKARYAL Triticum aestivum EST PLANTS-STREPTOPHYTA incomplete International Public Ge00283 002308_GCAT 4565 10678 600000 NCBI, USDA, cerealsDB, TIGR, Sputnik International Cooperative, cerealsDB NSF, BBSRC contact http://wheat.pw.usda.gov/NSF/participants.html Eukaryota Streptophyta Ericales Ericaceae Vaccinium Vaccinium alaskaense EUKARYAL Vaccinium spp. EST PLANTS-STREPTOPHYTA incomplete New Zealand Proprietary Ge00162 002309_GCAT 13749 Genesis Genesis Eukaryota Streptophyta Vitales Vitaceae Vitis Vitis shuttleworthii EUKARYAL Vitis shuttleworthii JL2001 EST PLANTS-STREPTOPHYTA incomplete USA Public Ge00163 002310_GCAT 246827 Florida A&M Univ Eukaryota Streptophyta Vitales Vitaceae Vitis Vitis vinifera EUKARYAL Vitis vinifera EST PLANTS-STREPTOPHYTA incomplete Australia Public Ge00164 002311_GCAT 29760 Grapevine Genome database, Sputnik Centre for Plant Conservation Genetics contact http://www.scu.edu.au/research/cpcg/genomics/sxn4/contact.php Eukaryota Streptophyta Vitales Vitaceae Vitis Vitis vinifera EUKARYAL Vitis vinifera L. Pinot Noir, clone 115 ABI, 454 11x Genome PLANTS-STREPTOPHYTA Draft incomplete Italy Public Gi02175 002868_GCAT 29760 18357 IASMA Research Center Eukaryota Streptophyta Vitales Vitaceae Vitis Vitis vinifera EUKARYAL Vitis vinifera EST PLANTS-STREPTOPHYTA incomplete USA Public Ge00165 002313_GCAT 29760 12993 TIGR, Univ of California, Davis Univ of California, Davis Cook D drcook@ucdavis.edu Eukaryota Chlorophyta Chlamydomonadales Volvocaceae Volvox Volvox carteri EUKARYAL Volvox carteri f. nagariensis 69-1b Genome PLANTS-CHLOROPHYTA incomplete Sphere-shaped, Multicellular Model organism, Evolutionary None USA Public Gi00776 002314_GCAT 3068 13109 120000 Joint Genome Institute DOE Eukaryota Streptophyta Poales Poaceae Zea Zea mays EUKARYAL Zea mays B73 Genome PLANTS-STREPTOPHYTA incomplete USA Public Gi00705 002315_GCAT 4577 10769 2400000 10 0 NCBI, Univ of Minnesota, MaizeDB, CSHL, cerealsDB, TIGR, ZmDB, Stanford Univ, Acemaz, Sputnik, Washington Univ Univ of Minnesota, Cold Spring Harbor Laboratory, Univ of Arizona, cerealsDB, Washington Univ BBSRC Coe E CoeE@missouri.edu Eukaryota Mollusca Opisthobranchia Aplysiidae Aplysia Aplysia californica EUKARYAL Aplysia californica ABI 6x Genome MOLLUSKA Draft incomplete F4 generation inbred in Miami USA Public Gi00988 002316_GCAT 6500 13635 17 0 AASC01000000 Broad Institute NIH-NHGRI Eukaryota Mollusca Pectinoida Pectinidae Argopecten Argopecten irradians EUKARYAL Argopecten irradians EST MOLLUSKA incomplete USA Public Ge00166 002317_GCAT 31199 13038 Marine Biological Laboratory Marine Biological Laboratory Goetz F http://www.mbl.edu/goetz/ Eukaryota Mollusca Pulmonata Planorbidae Biomphalaria Biomphalaria glabrata EUKARYAL Biomphalaria glabrata ABI 6x Genome MOLLUSKA incomplete USA Public Gi00755 002318_GCAT 6526 12879 931000 NCBI, Washington Univ, Univ of New Mexico Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth Eukaryota Mollusca Docoglossa Lottiidae Lottia Lottia scutum EUKARYAL Lottia scutum Genome MOLLUSKA incomplete International Public Gi00798 002319_GCAT 351231 Joint Genome Institute, Univ of California, Berkeley, Univ of Washington, Univ of Arizona, Univ of Queensland DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Mollusca Docoglossa Lottiidae Lottia Lottia gigantea EUKARYAL Lottia gigantea Genome MOLLUSKA incomplete USA Public Gi01889 002320_GCAT 225164 Joint Genome Institute, Univ of California, Berkeley DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Mollusca Mytiloida Mytilidae Mytilus Mytilus californianus EUKARYAL Mytilus californianus Genome MOLLUSKA incomplete Environmental, Biotechnological None Aquatic USA Public Gi01108 002321_GCAT 6549 1570000 Joint Genome Institute, Stanford Univ DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Mollusca Veneroida Mactridae Spisula Spisula solidissima EUKARYAL Spisula solidissima EST MOLLUSKA incomplete International Public Ge00220 002322_GCAT 6584 12960 NCBI Marine Biological Laboratory, Hebrew Univ, Technion-Israel Institute of Technology Gruss Lipper Family Foundation Eukaryota Streptophyta Malpighiales Euphorbiaceae Euphorbia Euphorbia esula EUKARYAL Euphorbia esula EST PLANTS-STREPTOPHYTA incomplete USA Public Ge00221 002323_GCAT 3993 Univ of Illinois at Urbana-Champaign Anderson J Andersjv@fargo.ars.usda.gov Eukaryota Mollusca Ostreoida Ostreidae Crassostrea Crassostrea virginica EUKARYAL Crassostrea virginica EST MOLLUSKA incomplete USA Public Ge00167 002324_GCAT 6565 12979 Auburn Univ Eukaryota Echinodermata Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus EUKARYAL Lytechinus variegatus Genome ECHINODERMATA incomplete USA Public Gi00339 002325_GCAT 7654 BCM-HGSC BCM-HGSC NIH-NHGRI HGSC hgsc-help@bcm.tmc.edu Eukaryota Arthropoda Geophilomorpha Linotaeniidae Strigamia Strigamia maritima EUKARYAL Strigamia maritima Genome ARTHROPODA incomplete incomplete Evolutionary USA Public Gi02481 003206_GCAT 126957 20501 BCM-HGSC NIH-NHGRI Eukaryota Echinodermata Echinoida Strongylocentrotidae Strongylocentrotus Strongylocentrotus franciscanus EUKARYAL Strongylocentrotus franciscanus 454 1x Genome ECHINODERMATA incomplete incomplete USA Public Gi02482 003207_GCAT 7665 20313 BCM-HGSC NIH-NHGRI Eukaryota Echinodermata Echinoida Strongylocentrotidae Allocentrotus Allocentrotus fragilis EUKARYAL Allocentrotus fragilis 454 1x Genome ECHINODERMATA incomplete incomplete USA Public Gi02463 003185_GCAT 86255 20317 BCM-HGSC BCM-HGSC NIH-NHGRI HGSC hgsc-help@bcm.tmc.edu Eukaryota unclassified unclassified Apusomonadidae Amastigomonas Amastigomonas sp. EUKARYAL Amastigomonas sp. Genome PROTISTS incomplete incomplete Marine, Aquatic USA Public Gi02464 003186_GCAT 172826 20465 BCM-HGSC NIH-NHGRI HGSC hgsc-help@bcm.tmc.edu Eukaryota unclassified Ichthyophonida Amoebidiaceae Amoebidium Amoebidium parasiticum EUKARYAL Amoebidium parasiticum Genome FUNGI incomplete incomplete Evolutionary External cuticule of Crustaceans, Amphipods, Isopods, Copepods and Insects USA Public Gi02465 003187_GCAT 4881 20483 BCM-HGSC NIH-NHGRI HGSC hgsc-help@bcm.tmc.edu Eukaryota Echinodermata Echinoida Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus EUKARYAL Strongylocentrotus purpuratus A3 ABI 8x Genome ECHINODERMATA Draft Evolutionary, Model organism None Aquatic USA Public Gi00632 002326_GCAT 7668 10736 900000 27350 20 0 AAGJ02000000 NCBI, CalTech BCM-HGSC, Consortium II Stowers Institute for Medical Research CalTech help@sea-urchin.caltech.edu Eukaryota Echinodermata Echinoida Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus EUKARYAL Strongylocentrotus purpuratus California Genome ECHINODERMATA incomplete Evolutionary None Aquatic USA Public Gi00631 002327_GCAT 7668 10728 BCM-HGSC, NHGRI BCM-HGSC NIH-NHGRI HGSC hgsc-help@bcm.tmc.edu Eukaryota Arthropoda Hemiptera Aphididae Acyrthosiphon Acyrthosiphon pisum EUKARYAL Acyrthosiphon pisum LSR1 ABI 6x Genome ARTHROPODA incomplete USA Public Gi00989 002328_GCAT 7029 13657 300000 4 NCBI BCM-HGSC NIH-NHGRI Eukaryota Arthropoda Hemiptera Aphididae Acyrthosiphon Acyrthosiphon pisum EUKARYAL Acyrthosiphon pisum Genome ARTHROPODA complete complete France Public Ge00237 002837_GCAT 7029 18025 40904 NCBI, INRA INRA, Genoscope Eukaryota Arthropoda Diptera Culicidae Aedes Aedes albopictus EUKARYAL Aedes albopictus Genome ARTHROPODA incomplete Pathogen Medical, Human Pathogen Dengue fever USA Public Gi00016 002330_GCAT 7160 9552 3 0 NCBI, AalDB Colorado State Univ NIH ColoState aaedbmgr@mosquito.colostate.edu Eukaryota Arthropoda Diptera Culicidae Ochlerotatus Ochlerotatus triseriatus EUKARYAL Aedes triseriatus Genome ARTHROPODA incomplete USA Public Gi00017 002331_GCAT 7162 13350 NCBI, AtrDB Colorado State Univ NIH ColoState aaedbmgr@mosquito.colostate.edu Eukaryota Arthropoda Diptera Culicidae Aedes Aedes aegypti EUKARYAL Aedes aegypti EST ARTHROPODA incomplete incomplete USA Public Ge00259 002860_GCAT 7159 10631 80000 NCBI TIGR Eukaryota Streptophyta Brassicales Brassicaceae Arabidopsis Arabidopsis thaliana EUKARYAL Arabidopsis thaliana EST PLANTS-STREPTOPHYTA complete complete Japan Public Ge00260 002861_GCAT 3702 10721 12000 KDRI Kazusa DNA Research Institute Eukaryota Arthropoda Ixodida Ixodidae Amblyomma Amblyomma americanum EUKARYAL Amblyomma americanum EST ARTHROPODA incomplete USA Public Ge00168 002332_GCAT 6943 9550 NCBI, Univ of Oklahoma Univ of Oklahoma Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Eukaryota Arthropoda Ixodida Ixodidae Amblyomma Amblyomma variegatum EUKARYAL Amblyomma variegatum EST ARTHROPODA incomplete USA Public Ge00169 002333_GCAT 34610 TIGR TIGR NSF TIGR tgi@tigr.org Eukaryota Chordata Hyracoidea Procaviidae Procavia Procavia capensis EUKARYAL Procavia capensis Genome CHORDATA-MAMMALS incomplete None USA Public Gi01612 002335_GCAT 9813 NCBI, NISC-NIH BCM-HGSC NIH-NHGRI HGSC hgsc-help@bcm.tmc.edu Eukaryota Arthropoda Hymenoptera Apidae Apis Apis mellifera EUKARYAL Apis mellifera capensis Genome ARTHROPODA incomplete Agricultural, Medical None USA Public Gi00032 002336_GCAT 7460 135000 16 BCM-HGSC BCM-HGSC NIH-NHGRI, USDA HGSC hgsc-help@bcm.tmc.edu Eukaryota Arthropoda Hymenoptera Apidae Apis Apis mellifera EUKARYAL Apis mellifera ligustica EST ARTHROPODA complete complete Agricultural, Medical None USA Public Ge00170 002337_GCAT 7469 165 20000 16 0 NCBI, Univ of Illinois, TIGR Univ of Illinois at Urbana-Champaign Robinson G http://www.life.uiuc.edu/robinson/labbios/gene.html Eukaryota Arthropoda Hymenoptera Apidae Apis Apis mellifera EUKARYAL Apis mellifera scutellata Genome ARTHROPODA incomplete Agricultural, Medical None USA Public Gi00033 002338_GCAT 212527 9555 135000 16 0 BCM-HGSC BCM-HGSC NIH-NHGRI, USDA HGSC hgsc-help@bcm.tmc.edu Eukaryota Arthropoda Lepidoptera Nymphalidae Bicyclus Bicyclus anynana EUKARYAL Bicyclus anynana Genome ARTHROPODA incomplete USA Public Gi01116 002339_GCAT 110368 13891 NCBI Joint Genome Institute DOE Eukaryota Arthropoda Lepidoptera Nymphalidae Bicyclus Bicyclus anynana EUKARYAL Bicyclus anynana EST ARTHROPODA complete complete USA Public Ge00238 002839_GCAT 110368 18027 9903 NCBI Univ of California, Irvine, Turku Centre for Biotechnology Eukaryota Arthropoda Lepidoptera Bombycidae Bombyx Bombyx mori EUKARYAL Bombyx mori Dazao EST ARTHROPODA incomplete Biotechnological, Protein production None China Public Ge00171 002341_GCAT 7091 12261 35000 28 0 NIAS, Japan Eukaryota Arthropoda Diptera Culicidae Culex Culex pipiens EUKARYAL Culex pipiens quinquefasciatus JHB ABI Genome ARTHROPODA Draft incomplete USA Public Gi01224 002342_GCAT 7176 18751 AAWU00000000 Broad Institute NIH-NIAID MSC msc@broad.mit.edu Eukaryota Arthropoda Diptera Culicidae Culex Culex pipiens EUKARYAL Culex pipiens Genome ARTHROPODA incomplete USA Public Gi00184 002343_GCAT 7175 540000 3 0 NCBI, CupDB Colorado State Univ NIH ColoState aaedbmgr@mosquito.colostate.edu Eukaryota Arthropoda Coleoptera Chrysomelidae Diabrotica Diabrotica wartensis EUKARYAL Diabrotica EST ARTHROPODA incomplete USA Public Ge00172 002344_GCAT 50385 Univ of Illinois Univ of Illinois at Urbana-Champaign Gray ME http://www.ag.uiuc.edu/~stratsoy/expert/gray.html Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila ananassae EUKARYAL Drosophila ananassae ABI 8x Genome ARTHROPODA Draft USA Public Gi00201 002345_GCAT 7217 12651 4 0 AAPP01000000 NHGRI Agencourt Bioscience NIH-NHGRI Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila auraria EUKARYAL Drosophila auraria Genome ARTHROPODA incomplete Japan Public Gi01793 002346_GCAT 47315 RIKEN MEXT Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila erecta EUKARYAL Drosophila erecta TSC#14021-0224.01 ABI 8x Genome ARTHROPODA Draft incomplete USA Public Gi00202 002347_GCAT 7220 12661 4 0 AAPQ01000000 NHGRI Agencourt Bioscience NIH-NHGRI Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila grimshawi EUKARYAL Drosophila grimshawi TSC#15287-2541.00 ABI 8x Genome ARTHROPODA Draft incomplete USA Public Gi00203 002348_GCAT 7222 12678 4 0 AAPT01000000 NHGRI Agencourt Bioscience NIH-NHGRI Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila hydei EUKARYAL Drosophila hydei Genome ARTHROPODA incomplete USA Public Gi01932 002556_GCAT 7224 12782 Clemson Univ Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila mojavensis EUKARYAL Drosophila mojavensis TSC#15081-1352.22 ABI 8x Genome ARTHROPODA Draft incomplete USA Public Gi00204 002349_GCAT 7230 12682 4 0 AAPU01000000 NHGRI Agencourt Bioscience NIH-NHGRI Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila persimilis EUKARYAL Drosophila persimilis MSH-3, 14011-0111.49 ABI 3x 14011-0111.49 Genome ARTHROPODA Draft complete USA Public Gi00205 002350_GCAT 7234 12705 4 0 AAIZ01000000 NHGRI Broad Institute NIH-NHGRI Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila sechellia EUKARYAL Drosophila sechellia Rob3c, 14021-0248.25 ABI 8x 14021-0248.25 Genome ARTHROPODA Draft complete USA Public Gi00207 002352_GCAT 7238 12711 4 0 AAKO01000000 NHGRI Broad Institute NIH-NHGRI Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila simulans EUKARYAL Drosophila simulans sim6-1.0 ABI 1x Genome ARTHROPODA Draft incomplete USA Public Gi00208 002353_GCAT 7240 17569 4 0 AASW01000000 Washington Univ Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila simulans EUKARYAL Drosophila simulans white501 ABI 4x Genome ARTHROPODA Draft incomplete USA Public Gi01939 002563_GCAT 7240 12464 4 0 AAGH01000000 Washington Univ Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila simulans EUKARYAL Drosophila simulans New Caledonia 48S ABI 1x Genome ARTHROPODA Draft incomplete USA Public Gi01938 002562_GCAT 7240 17565 4 0 AASU01000000 Washington Univ Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila simulans EUKARYAL Drosophila simulans sim4-1.0 ABI 1x Genome ARTHROPODA Draft incomplete USA Public Gi01937 002561_GCAT 7240 17567 4 0 AASV01000000 Washington Univ Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila simulans EUKARYAL Drosophila simulans c1674-1.0 ABI 1x Genome ARTHROPODA Draft incomplete USA Public Gi01936 002560_GCAT 7240 17557 4 0 AASR01000000 Washington Univ Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila simulans EUKARYAL Drosophila simulans md106-1.0 ABI 1x Genome ARTHROPODA Draft incomplete USA Public Gi01935 002559_GCAT 7240 17559 4 0 AASS01000000 Washington Univ Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila simulans EUKARYAL Drosophila simulans md199-1.0 ABI 1x Genome ARTHROPODA Draft incomplete USA Public Gi01934 002558_GCAT 7240 17563 4 0 AAST01000000 Washington Univ Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila simulans EUKARYAL Drosophila simulans mosaic-1.0 ABI 4x Genome ARTHROPODA incomplete USA Public Gi01933 002557_GCAT 7240 18237 4 0 Washington Univ Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila virilis EUKARYAL Drosophila virilis TSC#15010-1051.87 ABI 8x 15010-1051.87 Genome ARTHROPODA Draft incomplete USA Public Gi00209 002354_GCAT 7244 12688 4 0 AANI01000000 NHGRI Agencourt Bioscience NIH-NHGRI Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila willistoni EUKARYAL Drosophila willistoni TSC#14030-0811.24 ABI 7.5x 14030-0811.24 Genome ARTHROPODA Draft incomplete USA Public Gi00210 002355_GCAT 7260 12664 4 0 AAQB01000000 NHGRI J Craig Venter Institute NIH-NHGRI Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila silvestris EUKARYAL Drosophila silvestris Genome ARTHROPODA incomplete USA Public Gi01117 002356_GCAT 47010 12787 CUGI/AGI NIH-NHGRI Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila repleta EUKARYAL Drosophila repleta Genome ARTHROPODA incomplete USA Public Gi01118 002357_GCAT 30043 12773 CUGI/AGI NIH-NHGRI Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila novamexicana EUKARYAL Drosophila novamexicana Genome ARTHROPODA incomplete USA Public Gi01119 002358_GCAT 47314 12765 CUGI/AGI NIH-NHGRI Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila mimica EUKARYAL Drosophila mimica Genome ARTHROPODA incomplete USA Public Gi01120 002359_GCAT 7270 12790 CUGI/AGI NIH-NHGRI Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila miranda EUKARYAL Drosophila miranda Genome ARTHROPODA incomplete USA Public Gi01121 002360_GCAT 7229 12759 CUGI/AGI NIH-NHGRI Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila mercatorum EUKARYAL Drosophila mercatorum Genome ARTHROPODA incomplete USA Public Gi01130 002361_GCAT 7253 12776 CUGI/AGI NIH-NHGRI Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila littoralis EUKARYAL Drosophila littoralis Genome ARTHROPODA incomplete USA Public Gi01131 002362_GCAT 47316 12771 CUGI/AGI NIH-NHGRI Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila americana EUKARYAL Drosophila americana Genome ARTHROPODA incomplete USA Public Gi01132 002363_GCAT 40366 12763 CUGI/AGI NIH-NHGRI Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila equinoxialis EUKARYAL Drosophila equinoxialis Genome ARTHROPODA incomplete USA Public Gi01133 002364_GCAT 46790 12761 CUGI/AGI NIH-NHGRI Eukaryota Arthropoda Diptera Drosophilidae Drosophila Drosophila yakuba EUKARYAL Drosophila yakuba Tai18E2 ABI 8x Genome ARTHROPODA Draft incomplete USA Public Gi00211 002365_GCAT 7245 12265 4 0 AAEU02000000 NCBI, Washington Univ, NHGRI Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth Eukaryota Arthropoda Decapoda Portunidae Callinectes Callinectes sapidus EUKARYAL Callinectes sapidus EST ARTHROPODA incomplete USA Public Ge00173 002366_GCAT 6763 13026 Marine Genomics MDIBL Towle DW dtowle@mdibl.org Eukaryota Arthropoda Decapoda Ocypodidae Celuca Celuca pugilator EUKARYAL Celuca pugilator EST ARTHROPODA incomplete USA Public Ge00174 002367_GCAT 6772 Univ of Oklahoma Univ of Oklahoma NSF Roe B broe@ou.edu Eukaryota Arthropoda Diplostraca Daphniidae Daphnia Daphnia pulex EUKARYAL Daphnia pulex Log50 ABI 8x Genome ARTHROPODA incomplete Environmental None Aquatic USA Public Gi00188 002368_GCAT 6669 12756 Daphnia Genomics Consortium Daphnia Genomics Consortium, Joint Genome Institute DOE Eukaryota Arthropoda Diplostraca Daphniidae Daphnia Daphnia magna EUKARYAL Daphnia magna Genome ARTHROPODA incomplete USA Public Gi00187 002369_GCAT 35525 13036 Daphnia Genomics Consortium Daphnia Genomics Consortium Eukaryota Arthropoda Decapoda Penaeidae Fenneropenaeus Fenneropenaeus chinensis EUKARYAL Fenneropenaeus chinensis EST ARTHROPODA incomplete China Public Ge00175 002370_GCAT 139456 Chinese Institute of Oceanology Xiang J jhxiang@ms.qdio.ac.cn Eukaryota Chordata unclassified Oikopleuridae Oikopleura Oikopleura dioica EUKARYAL Oikopleura dioica ABI 10x Genome CHORDATA-APPENDICULARIANS incomplete International Public Gi00418 002371_GCAT 34765 12901 72000 NCBI, Genoscope, SARS, Norway Max Planck Institute, Genoscope, SARS, Norway Chourrout, D http://www.sars.no/group1.html Eukaryota Arthropoda Lepidoptera Noctuidae Helicoverpa Helicoverpa armigera EUKARYAL Helicoverpa armigera Genome-Regions ARTHROPODA incomplete Agricultural France Public Gi01794 002372_GCAT 29058 Genoscope Genoscope Choisne N choisne@genoscope.cns.fr Eukaryota Arthropoda Lepidoptera Noctuidae Spodoptera Spodoptera frugiperda EUKARYAL Spodoptera frugiperda Genome-Regions ARTHROPODA incomplete Agricultural France Public Gi01795 002373_GCAT 7108 18093 Genoscope Genoscope Choisne N choisne@genoscope.cns.fr Eukaryota Streptophyta Poales Poaceae Triticum Triticum monococcum EUKARYAL Triticum monococcum Genome-Regions PLANTS-STREPTOPHYTA incomplete Agricultural France Public Gi01796 002374_GCAT 4568 13344 5700 Genoscope Genoscope Samain S samain@genoscope.cns.fr Eukaryota Streptophyta Poales Poaceae Aegilops Aegilops tauschii EUKARYAL Triticum (Aegilops) tauschii Genome-Regions PLANTS-STREPTOPHYTA incomplete Agricultural France Public Gi01797 002375_GCAT 37682 15519 Genoscope Genoscope Samain S samain@genoscope.cns.fr Eukaryota Streptophyta Poales Poaceae Triticum Triticum turgidum EUKARYAL Triticum turgidum durum Genome-Regions PLANTS-STREPTOPHYTA incomplete Agricultural France Public Gi01798 002376_GCAT 4567 Genoscope Genoscope Samain S samain@genoscope.cns.fr Eukaryota Streptophyta Poales Poaceae Triticum Triticum aestivum EUKARYAL Triticum aestivum Genome-Regions PLANTS-STREPTOPHYTA incomplete Agricultural France Public Gi01799 002377_GCAT 4565 Genoscope Genoscope CNRG Samain S samain@genoscope.cns.fr Eukaryota Streptophyta Poales Poaceae Triticum Triticum aestivum EUKARYAL Triticum aestivum Genome PLANTS-STREPTOPHYTA incomplete Agricultural France Public Gi01800 002378_GCAT 4565 15528 16000000 21 International Consortium Eukaryota Arthropoda Diptera Glossinidae Glossina Glossina morsitans EUKARYAL Glossina morsitans Genome ARTHROPODA incomplete International Public Gi00276 002379_GCAT 37546 600000 SANBI Eukaryota Arthropoda Diptera Glossinidae Glossina Glossina morsitans EUKARYAL Glossina morsitans morsitans EST ARTHROPODA incomplete United Kingdom Public Ge00176 002380_GCAT 37546 194 21247 Sanger Institute Sanger Institute, Univ of Wales Bangor Wellcome Trust Eukaryota Arthropoda Lepidoptera Noctuidae Heliothis Heliothis virescens EUKARYAL Heliothis virescens Genome ARTHROPODA complete USA Proprietary Gi00297 002381_GCAT 7102 Genoptera LLC, Exelixis Inc, BAYER Eukaryota Arthropoda Ixodida Ixodidae Ixodes Ixodes scapularis EUKARYAL Ixodes scapularis Wikel ABI 6x Genome ARTHROPODA incomplete Vector of Pathogens Medical USA Public Gi01225 002382_GCAT 6945 16232 2100000 TIGR Broad Institute, TIGR NIH-NIAID MSC msc@broad.mit.edu Eukaryota Arthropoda Hymenoptera Pteromalidae Nasonia Nasonia vitripennis EUKARYAL Nasonia vitripennis SymAX ABI 6x Genome ARTHROPODA Draft incomplete Agricultural, Pest control USA Public Gi00990 002383_GCAT 7425 13660 330000 AAZX00000000 NCBI, Nasonia, BCM-HGSC, CUGI BCM-HGSC NIH-NHGRI Eukaryota Arthropoda Hymenoptera Pteromalidae Nasonia Nasonia giraulti EUKARYAL Nasonia giraulti SGS 1x Genome-Regions ARTHROPODA incomplete USA Public Gi01109 002384_GCAT 7426 20223 Nasonia, BCM-HGSC BCM-HGSC NIH-NHGRI Eukaryota Arthropoda Hymenoptera Pteromalidae Nasonia Nasonia longicornis EUKARYAL Nasonia longicornis SGS 1x Genome-Regions ARTHROPODA incomplete USA Public Gi01110 002385_GCAT 7427 20225 Nasonia, BCM-HGSC BCM-HGSC NIH-NHGRI Eukaryota Arthropoda Amphipoda Ischyroceridae Jassa Jassa slatteryi EUKARYAL Jassa slatteryi EST ARTHROPODA incomplete USA Public Ge00177 002386_GCAT 429038 Joint Genome Institute, Univ of California, Berkeley DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Arthropoda Amphipoda Hyalidae Parhyale Parhyale hawaiiensis EUKARYAL Parhyale hawaiiensis EST ARTHROPODA incomplete USA Public Ge00178 002387_GCAT 280677 2000000 Joint Genome Institute, Univ of California, Berkeley DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Arthropoda Phthiraptera Pediculidae Pediculus Pediculus humanus EUKARYAL Pediculus humanus corporis USDA ABI 8x Genome ARTHROPODA Draft incomplete Medical USA Public Gi01292 002388_GCAT 121224 16223 112000 11198 AAZO00000000 VectorBase, TIGR J Craig Venter Institute Eukaryota Arthropoda Phthiraptera Pediculidae Pediculus Pediculus humanus EUKARYAL Pediculus humanus corporis EST ARTHROPODA complete complete Medical USA Public Ge00232 002824_GCAT 121224 18879 20000 NCBI Purdue Univ, Univ of Massachusetts NIH Pittendrigh B http://www.entm.purdue.edu/pittendrigh_lab/ Eukaryota Arthropoda Decapoda unclassified Petrolisthes Petrolisthes cinctipes EUKARYAL Petrolisthes cinctipes EST ARTHROPODA incomplete USA Public Ge00179 002389_GCAT 88211 2000000 Joint Genome Institute, SFSU DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Arthropoda Hemiptera Reduviidae Rhodnius Rhodnius prolixus EUKARYAL Rhodnius prolixus ABI 8x Genome ARTHROPODA incomplete USA Public Gi02459 002390_GCAT 13249 13648 670000 11 0 NCBI, Washington Univ Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth Eukaryota Arthropoda unclassified Tetranychidae Tetranychus Tetranychus urticae EUKARYAL Tetranychus urticae London Genome ARTHROPODA incomplete Biotechnological, Pest control, Agricultural None USA Public Gi01574 002391_GCAT 32264 75000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Arthropoda Coleoptera Tenebrionidae Tribolium Tribolium castaneum EUKARYAL Tribolium castaneum Georgia GA2 ABI 6x Genome ARTHROPODA Draft incomplete None USA Public Gi00664 002392_GCAT 7070 12540 200000 8102 10 0 NC_007416-25 NHGRI, NCBI, BCM-HGSC BCM-HGSC NIH-NHGRI Eukaryota Arthropoda Decapoda Nephropidae Homarus Homarus americanus EUKARYAL Homarus americanus EST ARTHROPODA incomplete USA Public Ge00180 002393_GCAT 6706 12977 Marine Genomics MDIBL Towle DW dtowle@mdibl.org Eukaryota Arthropoda Decapoda Penaeidae Litopenaeus Litopenaeus vannamei EUKARYAL Litopenaeus vannamei EST ARTHROPODA incomplete Brazil Public Ge00181 002394_GCAT 6689 12975 Univ Federal de Sao Carlos Univ Federal de Sao Carlos CNPq Galetti PM galettip@power.ufscar.br Eukaryota Chordata Gasterosteiformes Gasterosteidae Gasterosteus Gasterosteus aculeatus EUKARYAL Gasterosteus aculeatus Bear Paw ABI 9x Genome CHORDATA-FISH Draft incomplete Freshwater lake USA Public Gi00269 002395_GCAT 69293 13579 680000 AANH01000000 NHGRI, Broad Institute, NISC-NIH, NIH Broad Institute NIH-NHGRI Eukaryota Tardigrada Apochela Hypsibiidae Hypsibius Hypsibius dujardini EUKARYAL Hypsibius dujardini ABI 5x Genome TARDIGRADA incomplete incomplete USA Public Gi02471 003194_GCAT 232323 20355 70000 Broad Institute NIH-NHGRI Eukaryota Arthropoda Amphipoda Ischyroceridae Jassa Jassa slatteryi EUKARYAL Jassa slatteryi ABI 6x Genome ARTHROPODA incomplete incomplete USA Public Gi02472 003196_GCAT 429038 20517 Broad Institute NIH-NHGRI Eukaryota Tardigrada Apochela Hypsibiidae Hypsibius Hypsibius dujardini EUKARYAL Hypsibius dujardini EST TARDIGRADA incomplete incomplete USA Public Ge00285 003195_GCAT 232323 20353 5235 Broad Institute NIH-NHGRI Eukaryota Chordata Siluriformes Ictaluridae Ictalurus Ictalurus punctatus EUKARYAL Ictalurus punctatus EST CHORDATA-FISH incomplete USA Public Ge00182 002396_GCAT 7998 12439 44767 NCBI, TIGR, Auburn Univ, USDA TIGR, Auburn Univ TIGR tgi@tigr.org Eukaryota Chordata Siluriformes Ictaluridae Ictalurus Ictalurus punctatus EUKARYAL Ictalurus punctatus Genome-Regions CHORDATA-FISH incomplete USA Public Gi01801 002397_GCAT 7998 NCBI, NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata Squaliformes Squalidae Squalus Squalus acanthias EUKARYAL Squalus acanthias Genome-Regions CHORDATA-FISH incomplete USA Public Gi01802 002398_GCAT 7797 13347 NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii EUKARYAL Callorhinchus milii IMCB2004 ABI 1.4x Genome-Regions CHORDATA-FISH Draft incomplete Testis Singapore Public Gi01928 002552_GCAT 7868 18361 910000 AAVX00000000 NCBI, IMCB IMCB, J Craig Venter Institute Eukaryota Chordata Orectolobiformes Ginglymostomatidae Ginglymostoma Ginglymostoma cirratum EUKARYAL Ginglymostoma cirratum Genome-Regions CHORDATA-FISH incomplete USA Public Gi01803 002399_GCAT 7801 NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata Tetraodontiformes Tetraodontidae Sphoeroides Sphoeroides nephelus EUKARYAL Sphoeroides nephelus Genome-Regions CHORDATA-FISH incomplete USA Public Gi01804 002400_GCAT 39110 NISC-NIH NIH-NHGRI Eukaryota Chordata Monotremata Tachyglossidae Tachyglossus Tachyglossus aculeatus EUKARYAL Tachyglossus aculeatus Genome-Regions CHORDATA-MAMMALS incomplete USA Public Gi01805 002401_GCAT 9261 NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata unclassified Cervidae Muntiacus Muntiacus muntjak EUKARYAL Muntiacus muntjak vaginalis Genome-Regions CHORDATA-MAMMALS incomplete USA Public Gi01806 002402_GCAT 9887 NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata Primates Atelidae Ateles Ateles geoffroyi EUKARYAL Ateles geoffroyi Genome-Regions CHORDATA-PRIMATES incomplete USA Public Gi01807 002403_GCAT 9509 NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata Primates Cercopithecidae Colobus Colobus guereza EUKARYAL Colobus guereza Genome-Regions CHORDATA-PRIMATES incomplete USA Public Gi01808 002404_GCAT 33548 NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata Primates Aotidae Aotus Aotus nancymaae EUKARYAL Aotus nancymaae Genome-Regions CHORDATA-PRIMATES incomplete USA Public Gi01809 002405_GCAT 37293 NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata Primates Cercopithecidae Chlorocebus Chlorocebus aethiops EUKARYAL Cercopithecus (Chlorocebus) aethiops Genome-Regions CHORDATA-PRIMATES incomplete USA Public Gi01810 002406_GCAT 9534 NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata Carnivora Felidae Neofelis Neofelis nebulosa EUKARYAL Neofelis nebulosa Genome-Regions CHORDATA-MAMMALS incomplete USA Public Gi01811 002407_GCAT 61452 NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata Carnivora Mustelidae Mustela Mustela putorius EUKARYAL Mustela putorius furo Genome-Regions CHORDATA-MAMMALS incomplete USA Public Gi01812 002408_GCAT 9669 NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata Chiroptera Pteropodidae Pteropus Pteropus vampyrus EUKARYAL Pteropus vampyrus ABI 2x Genome-Regions CHORDATA-MAMMALS incomplete USA Public Gi01907 002540_GCAT 132908 NISC-NIH BCM-HGSC, NISC-NIH NIH-NHGRI Eukaryota Chordata Cetacea Delphinidae Tursiops Tursiops truncatus EUKARYAL Tursiops truncatus ABI 2x Genome-Regions CHORDATA-MAMMALS incomplete USA Public Gi02181 002878_GCAT 9739 20367 BCM-HGSC, NISC-NIH NIH-NHGRI Eukaryota Chordata Rodentia Heteromyidae Dipodomys Dipodomys ordii EUKARYAL Dipodomys ordii ABI 2x Genome-Regions CHORDATA-MAMMALS incomplete USA Public Gi02183 002880_GCAT 10020 20385 BCM-HGSC, NISC-NIH NIH-NHGRI Eukaryota Chordata Primates Tarsiidae Tarsius Tarsius syrichta EUKARYAL Tarsius syrichta ABI 2x Genome-Regions CHORDATA-MAMMALS incomplete USA Public Gi02182 002879_GCAT 9478 20339 Washington Univ, NISC-NIH NIH-NHGRI Eukaryota Chordata unclassified Camelidae Lama Lama glama EUKARYAL Lama glama ABI 2x Genome-Regions CHORDATA-MAMMALS incomplete USA Public Gi02184 002881_GCAT 9844 Washington Univ, NISC-NIH NIH-NHGRI Eukaryota Chordata Dermoptera Cynocephalidae Cynocephalus Cynocephalus volans EUKARYAL Cynocephalus sp. ABI 2x Genome-Regions CHORDATA-MAMMALS incomplete USA Public Gi02185 002882_GCAT 9456 Washington Univ, NISC-NIH NIH-NHGRI Eukaryota Chordata Enterogona Cionidae Ciona Ciona intestinalis EUKARYAL Ciona intestinalis EST CHORDATA-ASCIDIAN incomplete Evolutionary None Aquatic International Public Ge00183 002409_GCAT 7719 12435 90000 14 0 TIGR, Kyoto Univ, National Institute of Genetics, Japan TIGR, Kyoto Univ, National Institute of Genetics, Japan TIGR tgi@tigr.org Eukaryota Chordata Enterogona Cionidae Ciona Ciona savignyi EUKARYAL Ciona savignyi ABI 13x Genome CHORDATA-ASCIDIAN Quality Draft complete Evolutionary None Aquatic USA Public Gi00152 002410_GCAT 51511 1435 180000 15000 AACT00000000 NCBI, Broad Institute, NHGRI Broad Institute NIH-NHGRI MIT annotation-info@genome.wi.mit.edu Eukaryota Chordata Stolidobranchia Pyuridae Halocynthia Halocynthia roretzi EUKARYAL Halocynthia roretzi EST CHORDATA-ASCIDIAN incomplete Japan Public Ge00184 002411_GCAT 7729 MAGEST Kyoto Univ MEXT Makabe KW kwmakabe@ascidian.zool.kyoto-u.ac.jp Eukaryota Chordata Rajiformes Rajidae Leucoraja Leucoraja erinacea EUKARYAL Leucoraja erinacea Genome-Regions CHORDATA-FISH incomplete USA Public Gi00991 002412_GCAT 7782 13631 NISC-NIH Washington Univ, NISC-NIH NIH-NHGRI Eukaryota Chordata Rajiformes Rajidae Leucoraja Leucoraja erinacea EUKARYAL Leucoraja erinacea EST CHORDATA-FISH incomplete USA Public Ge00229 002817_GCAT 7782 13346 Mount Desert Island Biological Lab Eukaryota Chordata Rajiformes Rajidae Leucoraja Leucoraja erinacea EUKARYAL Leucoraja erinacea EST CHORDATA-FISH incomplete USA Public Ge00228 002816_GCAT 7782 13034 Marine Genomics Medical Univ of South Carolina Eukaryota Chordata Salmoniformes Salmonidae Oncorhynchus Oncorhynchus mykiss EUKARYAL Oncorhynchus mykiss EST CHORDATA-FISH incomplete USA Public Ge00185 002413_GCAT 8022 12370 TIGR TIGR, NCCCWA TIGR tgi@tigr.org Eukaryota Chordata Beloniformes Adrianichthyidae Oryzias Oryzias latipes EUKARYAL Oryzias latipes HNI ABI Genome CHORDATA-FISH Quality Draft incomplete Japan Public Gi01531 002414_GCAT 8090 19569 700000 20141 48 0 BAAE00000000 NCBI, Nagoya Univ National Institute of Genetics, Japan Eukaryota Chordata Beloniformes Adrianichthyidae Oryzias Oryzias latipes EUKARYAL Oryzias latipes Hd-rR ABI Genome CHORDATA-FISH Quality Draft incomplete Japan Public Gi02165 002823_GCAT 8090 16702 700000 20141 48 0 BAAF00000000 NCBI, Nagoya Univ National Institute of Genetics, Japan Eukaryota Chordata Beloniformes Adrianichthyidae Oryzias Oryzias latipes EUKARYAL Oryzias latipes EST CHORDATA-FISH incomplete International Public Ge00186 002415_GCAT 8090 TIGR, National Institute of Genetics, Japan TIGR, National Institute of Genetics, Japan TIGR tgi@tigr.org Eukaryota Chordata Perciformes Cichlidae Oreochromis Oreochromis niloticus EUKARYAL Oreochromis niloticus Genome CHORDATA-FISH incomplete USA Public Gi00419 002416_GCAT 8128 12436 Roslin Institute Univ of New Hampshire Eukaryota Chordata Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus EUKARYAL Petromyzon marinus Genome CHORDATA-FISH incomplete USA Public Gi00758 002417_GCAT 7757 12754 Washington Univ Washington Univ NIH-NHGRI Clifton S http://genome.wustl.edu/Bio/email_data.cgi?staff=Sandra%20Clifton Eukaryota Chordata Salmoniformes Salmonidae Salmo Salmo salar EUKARYAL Salmo salar Genome CHORDATA-FISH incomplete Canada Public Gi00529 002418_GCAT 8030 12902 Genome BC, TIGR Genome British Columbia Genome BC, Genome Canada Koop B http://web.uvic.ca/~bioweb/people/koop.html Eukaryota Chordata Caudata Ambystomatidae Ambystoma Ambystoma mexicanum EUKARYAL Ambystoma mexicanum EST CHORDATA-AMPHIBIA incomplete USA Public Ge00187 002419_GCAT 8296 12937 33000 Colorado State Univ Colorado State Univ NSF, NIH Voss R http://www.biology.colostate.edu/Faculty/voss.htm Eukaryota Chordata Caudata Ambystomatidae Ambystoma Ambystoma mexicanum EUKARYAL Ambystoma mexicanum EST CHORDATA-AMPHIBIA incomplete Germany Public Ge00188 002420_GCAT 8296 12938 17000 Univ of Kentucky, Scionics, Max Planck Institute Habermann, B habermann@mpi-cbg.de Eukaryota Chordata Caudata Ambystomatidae Ambystoma Ambystoma tigrinum EUKARYAL Ambystoma tigrinum tigrinum EST CHORDATA-AMPHIBIA incomplete USA Public Ge00189 002421_GCAT 43116 12935 Univ of Kentucky Univ of Kentucky Eukaryota Chordata Anura Pipidae Xenopus Xenopus laevis EUKARYAL Xenopus laevis Genome CHORDATA-AMPHIBIA incomplete USA Public Gi00697 002422_GCAT 8355 19795 NCBI, Washington Univ, TIGR Washington Univ NIH WASHU est@watson.wustl.edu Eukaryota Chordata Anura Pipidae Xenopus Xenopus laevis EUKARYAL Xenopus laevis EST CHORDATA-AMPHIBIA incomplete Japan Public Ge00267 002869_GCAT 8355 205432 National Bioresource Project National Institute for Basic Biology NBP http://www.shigen.nig.ac.jp/xenopus/contact/contact.jsp Eukaryota Chordata Anura Pipidae Xenopus Xenopus tropicalis EUKARYAL Xenopus tropicalis EST CHORDATA-AMPHIBIA incomplete Japan Public Ge00268 002870_GCAT 8364 59893 National Bioresource Project National Institute for Basic Biology NBP http://www.shigen.nig.ac.jp/xenopus/contact/contact.jsp Eukaryota Chordata Anura Pipidae Xenopus Xenopus tropicalis EUKARYAL Xenopus tropicalis EST CHORDATA-AMPHIBIA incomplete complete United Kingdom Public Ge00190 002423_GCAT 8364 55000 Sanger Institute Sanger Institute, Wellcome CRC Institute Contact http://www.sanger.ac.uk/Projects/X_tropicalis/team.shtml Eukaryota Chordata Anura Pipidae Xenopus Xenopus tropicalis EUKARYAL Xenopus tropicalis ABI 8x Genome CHORDATA-AMPHIBIA incomplete USA Public Gi00722 002424_GCAT 8364 12348 Joint Genome Institute Joint Genome Institute DOE Richardson P PMRichardson@lbl.gov Eukaryota Chordata Apterygiformes Apterygidae Apteryx Apteryx australis EUKARYAL Apteryx australis EST CHORDATA-BIRDS incomplete New Zealand Proprietary Ge00191 002425_GCAT 8822 12704 NZGC NZGC Lambert d D.M.Lambert@massey.ac.nz Eukaryota Chordata Ciconiiformes Cathartidae Gymnogyps Gymnogyps californianus EUKARYAL Gymnogyps californianus Genome-Regions CHORDATA-BIRDS incomplete USA Public Gi01813 002427_GCAT 33616 19591 NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata Galliformes Phasianidae Meleagris Meleagris gallopavo EUKARYAL Meleagris gallopavo Genome-Regions CHORDATA-BIRDS incomplete USA Public Gi01814 002428_GCAT 9103 10805 NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata Casuariiformes Dromaiidae Dromaius Dromaius novaehollandiae EUKARYAL Dromaius novaehollandiae Genome-Regions CHORDATA-BIRDS incomplete USA Public Gi01815 002429_GCAT 8790 10826 NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata Galliformes Phasianidae Gallus Gallus gallus EUKARYAL Gallus gallus EST CHORDATA-BIRDS incomplete USA Public Ge00192 002430_GCAT 9031 10804 TIGR, Univ of Delaware TIGR, Univ of Delaware TIGR tgi@tigr.org Eukaryota Chordata Galliformes Phasianidae Meleagris Meleagris gallopavo EUKARYAL Meleagris gallopavo Genome CHORDATA-BIRDS incomplete USA Public Gi02452 002431_GCAT 9103 10805 CAENS, Univ of Minnesota Tuskegee Univ, Univ of Minnesota Eukaryota Chordata Passeriformes Estrildidae Taeniopygia Taeniopygia guttata EUKARYAL Taeniopygia guttata ABI 6x Genome CHORDATA-BIRDS incomplete USA Public Gi01483 002432_GCAT 59729 17289 Washington Univ, NCBI, NISC-NIH Washington Univ NIH-NHGRI Warren W http://genome.wustl.edu/Bio/email_data.cgi?staff=Wes%20Warren Eukaryota Chordata Insectivora Erinaceidae Atelerix Atelerix albiventris EUKARYAL Atelerix albiventris Clone-based Genome-Regions CHORDATA-MAMMALS incomplete Deserts of southern Africa USA Public Gi01122 002433_GCAT 9368 13684 24 0 NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata unclassified Bovidae Bos Bos indicus EUKARYAL Bos indicus EST CHORDATA-MAMMALS incomplete Brazil Public Ge00194 002434_GCAT 9915 ESALQ/USP Eukaryota Chordata unclassified Bovidae Bos Bos taurus EUKARYAL Bos taurus EST CHORDATA-MAMMALS incomplete USA Public Ge00195 002435_GCAT 9913 12291 13000 Univ of Illinois Univ of Illinois at Urbana-Champaign USDA Lewin HA http://www.biotech.uiuc.edu/people/harris.htm Eukaryota Chordata unclassified Bovidae Bos Bos taurus EUKARYAL Bos taurus EST CHORDATA-MAMMALS incomplete USA Public Ge00196 002436_GCAT 9913 17371 TIGR, USDA TIGR, USDA USDA TIGR tgi@tigr.org Eukaryota Chordata unclassified Bovidae Bos Bos taurus EUKARYAL Bos taurus L1 Dominette 01449 ABI 7.1x Genome CHORDATA-MAMMALS Draft incomplete White blood cells from L1 Dominette 01449 International Public Gi00086 002437_GCAT 9913 12555 1740000 20732 30 0 AAFC00000000 NCBI, BCM-HGSC, Cattle Genome Database, INRA, Texas A&M Univ, Roslin Institute, Integr8 International Collaboration, BCM-HGSC NIH-NHGRI, USDA Eukaryota Chordata unclassified Bovidae Bos Bos taurus EUKARYAL Bos taurus Genome CHORDATA-MAMMALS incomplete USA Proprietary Gi00087 002438_GCAT 9913 10708 MetaMorphix Eukaryota Chordata unclassified Bovidae Bos Bos taurus EUKARYAL Bos taurus. Genome CHORDATA-MAMMALS incomplete USA Public Gi00088 002439_GCAT 9913 10708 BCM-HGSC, NCBI, NHGRI BCM-HGSC NIH-NHGRI Eukaryota Chordata Xenarthra Megalonychidae Choloepus Choloepus hoffmanni EUKARYAL Choloepus hoffmanni ABI 2x Genome CHORDATA-MAMMALS incomplete USA Public Gi01484 002441_GCAT 9358 Washington Univ Washington Univ NIH-NHGRI Warren W http://genome.wustl.edu/Bio/email_data.cgi?staff=Wes%20Warren Eukaryota Chordata Pholidota Manidae Manis Manis pentadactyla EUKARYAL Manis pentadactyla ABI 2x Genome CHORDATA-MAMMALS incomplete USA Public Gi01485 002442_GCAT 143292 20331 Washington Univ Washington Univ NIH-NHGRI Warren W http://genome.wustl.edu/Bio/email_data.cgi?staff=Wes%20Warren Eukaryota Chordata Cetacea Delphinidae Pseudorca Pseudorca crassidens EUKARYAL Pseudorca crassidens Genome CHORDATA-MAMMALS incomplete USA Public Gi01377 002443_GCAT 82174 RIKEN MEXT Eukaryota Chordata Carnivora Canidae Canis Canis latrans EUKARYAL Canis latrans ABI Genome CHORDATA-MAMMALS incomplete USA Public Gi01123 002444_GCAT 9614 12893 Broad Institute NIH-NHGRI Eukaryota Chordata Lagomorpha Ochotonidae Ochotona Ochotona princeps EUKARYAL Ochotona princeps NMMNH268 ABI 2x Genome CHORDATA-MAMMALS Draft incomplete USA Public Gi01816 002445_GCAT 9978 19235 AAYZ00000000 Broad Institute Broad Institute NIH-NHGRI Eukaryota Chordata Carnivora Canidae Canis Canis lupus EUKARYAL Canis lupus ABI Genome CHORDATA-MAMMALS incomplete USA Public Gi01124 002446_GCAT 9612 12895 Broad Institute NIH-NHGRI Eukaryota Chordata Carnivora Canidae Canis Canis lupus EUKARYAL Canis lupus familiaris poodle ABI 1.5x Genome CHORDATA-MAMMALS Draft incomplete USA Public Gi00131 002447_GCAT 9615 10628 39 0 AACN010000000 NCBI, TIGR TIGR, Vanderbilt Univ TIGR tgi@tigr.org Eukaryota Chordata Primates Cebidae Callithrix Callithrix jacchus EUKARYAL Callithrix jacchus Genome CHORDATA-MAMMALS incomplete USA Public Gi00992 002448_GCAT 9483 13630 BCM-HGSC, Washington Univ, NISC-NIH BCM-HGSC, Washington Univ NIH-NHGRI Warren W http://genome.wustl.edu/Bio/email_data.cgi?staff=Wes%20Warren Eukaryota unclassified Dictyosteliida unclassified Dictyostelium Dictyostelium citrinum EUKARYAL Dictyostelium citrinum OH494 Genome PROTISTS-MYCETOZOA incomplete USA Public Gi01817 002449_GCAT 361072 34000 BCM-HGSC BCM-HGSC NSF Eukaryota unclassified Dictyosteliida unclassified Polysphondylium Polysphondylium violaceum EUKARYAL Polysphondylium violaceum P6 Genome PROTISTS-MYCETOZOA incomplete USA Public Gi01818 002450_GCAT 133409 34000 BCM-HGSC BCM-HGSC NSF Eukaryota Chordata Primates Cebidae Callithrix Callithrix jacchus EUKARYAL Callithrix jacchus Genome CHORDATA-MAMMALS incomplete USA Public Gi01819 002451_GCAT 9483 13629 RIKEN Eukaryota Chordata Rodentia Caviidae Cavia Cavia porcellus EUKARYAL Cavia porcellus inbred line 2N ABI 2x Genome CHORDATA-MAMMALS Draft incomplete USA Public Gi00744 002452_GCAT 10141 12583 31 0 AAKN00000000 NCBI, Broad Institute, NISC-NIH Broad Institute NIH-NHGRI Eukaryota Chordata Xenarthra Dasypodidae Dasypus Dasypus novemcinctus EUKARYAL Dasypus novemcinctus 3-136 ABI 6-7x Genome CHORDATA-MAMMALS Draft incomplete USA Public Gi00746 002453_GCAT 9361 12594 32 0 AAGV09000000 NCBI, Broad Institute, NISC-NIH Broad Institute, NISC-NIH NIH-NHGRI Eukaryota Chordata Dasyuromorphia Dasyuridae Sminthopsis Sminthopsis macroura EUKARYAL Sminthopsis macroura Genome-Regions CHORDATA-MAMMALS incomplete USA Public Gi01908 002541_GCAT 9302 NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata Dasyuromorphia Dasyuridae Sminthopsis Sminthopsis crassicaudata EUKARYAL Sminthopsis crassicaudata Genome-Regions CHORDATA-MAMMALS incomplete USA Public Gi01613 002454_GCAT 9301 NISC-NIH NIH-NHGRI Eukaryota Chordata Squamata Iguanidae Anolis Anolis carolinensis EUKARYAL Anolis carolinensis JBL SC #1 ABI 6.85x Genome CHORDATA-REPTILES Draft incomplete USA Public Gi01614 002455_GCAT 28377 18787 2200000 AAWZ00000000 Broad Institute NIH-NHGRI Eukaryota Chordata unclassified Crocodylidae Alligator Alligator mississippiensis EUKARYAL Alligator mississippiensis Genome-Regions CHORDATA-REPTILES incomplete USA Public Gi01820 002456_GCAT 8496 NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata Sphenodontia Sphenodontidae Sphenodon Sphenodon punctatus EUKARYAL Sphenodon punctatus Genome-Regions CHORDATA-REPTILES incomplete USA Public Gi01821 002457_GCAT 8508 NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata Chiroptera Vespertilionidae Myotis Myotis lucifugus EUKARYAL Myotis lucifugus ABI 6-7x Genome-Regions CHORDATA-MAMMALS Draft incomplete USA Public Gi01615 002458_GCAT 59463 16951 AAPE01000000 NCBI, Broad Institute, NISC-NIH Broad Institute NIH-NHGRI Eukaryota Chordata Chiroptera Phyllostomidae Artibeus Artibeus jamaicensis EUKARYAL Artibeus jamaicensis Genome-Regions CHORDATA-MAMMALS incomplete USA Public Gi01616 002459_GCAT 9417 NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata Chiroptera Phyllostomidae Carollia Carollia perspicillata EUKARYAL Carollia perspicillata Genome-Regions CHORDATA-MAMMALS incomplete USA Public Gi01617 002460_GCAT 40233 NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata unclassified Tenrecidae Echinops Echinops telfairi EUKARYAL Echinops telfairi 266 ABI 2x Genome CHORDATA-MAMMALS Draft incomplete USA Public Gi00745 002461_GCAT 9371 12590 AAIY00000000 Broad Institute, NISC-NIH Broad Institute NIH-NHGRI Eukaryota Chordata Proboscidea Elephantidae Elephas Elephas maximus EUKARYAL Elephas maximus Genome CHORDATA-MAMMALS incomplete USA Public Gi01226 002462_GCAT 9783 Broad Institute Broad Institute NIH-NHGRI Eukaryota Chordata Perissodactyla Equidae Equus Equus caballus EUKARYAL Equus caballus thoroughbred ABI 6.8x Genome CHORDATA-MAMMALS Draft incomplete USA Public Gi00232 002463_GCAT 9796 18661 AAWR00000000 Broad Institute, Univ of Kentucky, ARKdb, INRA Broad Institute, Univ of Kentucky USDA Frahm RR rfrahm@reeusda.gov Eukaryota Chordata Perissodactyla Equidae Equus Equus caballus EUKARYAL Equus caballus EST CHORDATA-MAMMALS incomplete USA Public Gi02454 002844_GCAT 9796 11762 80000 Laboratory for Genomics and Bioinformatics Univ of Georgia Eukaryota Chordata Insectivora Erinaceidae Erinaceus Erinaceus europaeus EUKARYAL Erinaceus europaeus ABI 2x Genome CHORDATA-MAMMALS Draft incomplete USA Public Gi00743 002464_GCAT 9365 12576 AANN00000000 Broad Institute, NCBI Broad Institute NIH-NHGRI Eukaryota Chordata Carnivora Felidae Felis Felis catus EUKARYAL Felis catus Genome CHORDATA-MAMMALS incomplete USA Public Gi00248 002465_GCAT 9685 National Cancer Institute National Cancer Institute Eukaryota Chordata Carnivora Felidae Felis Felis catus EUKARYAL Felis catus Abyssinian ABI 2x Genome CHORDATA-MAMMALS Draft incomplete USA Public Gi00748 002466_GCAT 9685 16726 AANG00000000 Broad Institute Agencourt Bioscience, Broad Institute NIH-NHGRI Eukaryota Chordata Proboscidea Elephantidae Loxodonta Loxodonta africana EUKARYAL Loxodonta africana ISIS603380 ABI 6-7x Genome CHORDATA-MAMMALS incomplete San Diego Zoo, CA USA Public Gi02449 002467_GCAT 9785 12569 3000000 28 0 AAGU01000000 NCBI, Broad Institute, NISC-NIH Broad Institute NIH-NHGRI Eukaryota unclassified unclassified Nucleariidae Nuclearia Nuclearia simplex EUKARYAL Nuclearia simplex Genome PROTISTS incomplete incomplete USA Public Gi02476 003201_GCAT 154970 20493 Broad Institute Eukaryota Chordata Diprotodontia Macropodidae Macropus Macropus eugenii EUKARYAL Macropus eugenii ABI 2x Genome CHORDATA-MAMMALS incomplete Australia Public Gi00341 002468_GCAT 9315 12587 Australian National Univ, BCM-HGSC, NHGRI, NISC-NIH BCM-HGSC, AGRF, Australian National Univ, Univ of Melbourne, Macquarie Univ NIH-NHGRI Wakefield M Matthew.Wakefield@anu.edu.au Eukaryota Chordata Monotremata Ornithorhynchidae Ornithorhynchus Ornithorhynchus anatinus EUKARYAL Ornithorhynchus anatinus ABI 6x Genome CHORDATA-MAMMALS Draft incomplete Model organism USA Public Gi00420 002471_GCAT 9258 12885 1840000 52 0 AAPN01000000 NCBI, Washington Univ, NHGRI, NISC-NIH Washington Univ NIH-NHGRI Warren W http://genome.wustl.edu/Bio/email_data.cgi?staff=Wes%20Warren Eukaryota Chordata Primates Hylobatidae Nomascus Nomascus leucogenys EUKARYAL Nomascus leucogenys leucogenys Genome CHORDATA-MAMMALS incomplete USA Public Gi01486 002472_GCAT 164929 13975 Washington Univ, NISC-NIH Washington Univ NIH-NHGRI Warren W http://genome.wustl.edu/Bio/email_data.cgi?staff=Wes%20Warren Eukaryota Nematoda Rhabditida Chabertiidae Oesophagostomum Oesophagostomum dentatum EUKARYAL Oesophagostomum dentatum Genome NEMATODES incomplete incomplete Biotechnological USA Public Gi02477 003202_GCAT 61180 20459 Washington Univ Eukaryota Nematoda Rhabditida Haemonchidae Ostertagia Ostertagia ostertagi EUKARYAL Ostertagia ostertagi Genome NEMATODES incomplete incomplete USA Public Gi02478 003203_GCAT 6317 20473 Washington Univ Eukaryota Chordata Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus EUKARYAL Oryctolagus cuniculus Thorbecke inbred ABI 6-7x Genome CHORDATA-MAMMALS Draft incomplete USA Public Gi00747 002473_GCAT 9986 12819 3500000 21 0 AAGW00000000 NCBI, http://www.broad.mit.edu/mammals/, NISC-NIH Broad Institute NIH-NHGRI Eukaryota Chordata unclassified Bovidae Ovis Ovis aries EUKARYAL Ovis aries EST CHORDATA-MAMMALS incomplete USA Public Ge00197 002474_GCAT 9940 186678 NCBI, Roslin Institute Eukaryota Chordata Insectivora Soricidae Sorex Sorex araneus EUKARYAL Sorex araneus GB8-d ABI 2x Genome CHORDATA-MAMMALS Draft incomplete Insectivore Piel Island UK USA Public Gi02450 002475_GCAT 42254 13689 3000000 AALT00000000 NCBI, Broad Institute, NISC-NIH Broad Institute NIH-NHGRI Eukaryota Chordata Rodentia Sciuridae Spermophilus Spermophilus tridecemlineatus EUKARYAL Spermophilus tridecemlineatus ABI 2x Genome CHORDATA-MAMMALS Draft incomplete USA Public Gi01145 002476_GCAT 43179 13937 AAQQ01000000 NCBI, Broad Institute, NISC-NIH Broad Institute NIH-NHGRI Eukaryota Chordata unclassified Suidae Sus Sus scrofa EUKARYAL Sus scrofa EST CHORDATA-MAMMALS incomplete USA Public Ge00198 002477_GCAT 9823 12452 NCBI, ARK-Genomics, Roslin Institute, Sputnik Roslin Institute Eukaryota Chordata unclassified Suidae Sus Sus scrofa EUKARYAL Sus scrofa EST CHORDATA-MAMMALS incomplete complete USA Public Ge00235 002834_GCAT 9823 16191 13000 NCBI, PEDE NIAS, STAFF-Institute Eukaryota Bacillariophyta unclassified Thalassiosiraceae Thalassiosira Thalassiosira pseudonana EUKARYAL Thalassiosira pseudonana EST PROTISTS-BACILLARIOPHYTA incomplete Carbon cycle, Carbon sequestration, Photosynthetic Environmental None Aquatic Italy Public Ge00236 002836_GCAT 35128 13883 30000 NCBI Stazione Zoologica Anton Dohrn Eukaryota Chordata unclassified Suidae Sus Sus scrofa EUKARYAL Sus scrofa ABI 6x Genome CHORDATA-MAMMALS incomplete China Public Gi00635 002478_GCAT 9823 13421 2800000 Sanger Institute, Roslin Institute, KVL, NCBI Beijing Genomics Institute, Sanger Institute, International Partnership Amersham Pharmacia Eukaryota Chordata Rodentia Muridae Mus Mus musculus EUKARYAL Mus musculus ABI Genome CHORDATA-MAMMALS Draft incomplete USA Public Gi02163 002820_GCAT 10090 11785 AAHY00000000 NCBI Celera Genomics Eukaryota Chordata Rodentia Muridae Mus Mus musculus EUKARYAL Mus musculus EST CHORDATA-MAMMALS incomplete Model organism None Japan Public Ge00231 002821_GCAT 10090 12246 60000 NCBI, RIKEN RIKEN Eukaryota Chordata Rodentia Muridae Rattus Rattus norvegicus EUKARYAL Rattus norvegicus GK/Ox ABI 0.01x Genome CHORDATA-MAMMALS Draft incomplete Model organism None European Consortium Public Gi02167 002828_GCAT 10116 18693 639431600 AAXP00000000 European STAR Consortium Eukaryota Chordata Rodentia Muridae Rattus Rattus norvegicus EUKARYAL Rattus norvegicus SHRSP/Bbb ABI 0.01x Genome CHORDATA-MAMMALS Draft incomplete Model organism None European Consortium Public Gi02171 002832_GCAT 10116 18689 AAXM00000000 European STAR Consortium Eukaryota Chordata Rodentia Muridae Rattus Rattus norvegicus EUKARYAL Rattus norvegicus SS/JrNhsd ABI 0.01x Genome CHORDATA-MAMMALS Draft incomplete Model organism None European Consortium Public Gi02170 002831_GCAT 10116 18691 AAXN00000000 European STAR Consortium Eukaryota Chordata Rodentia Muridae Rattus Rattus norvegicus EUKARYAL Rattus norvegicus WKY/Bbb ABI 0.01x Genome CHORDATA-MAMMALS Draft incomplete Model organism None European Consortium Public Gi02169 002830_GCAT 10116 18687 AAXL00000000 European STAR Consortium Eukaryota Chordata Rodentia Muridae Rattus Rattus norvegicus EUKARYAL Rattus norvegicus wild rat 1 ABI 0.01x Genome CHORDATA-MAMMALS Draft incomplete Model organism None Netherlands: canals of Utrecht European Consortium Public Gi02168 002829_GCAT 10116 18695 AAXO00000000 European STAR Consortium Eukaryota Chordata Rodentia Muridae Rattus Rattus norvegicus EUKARYAL Rattus norvegicus EST CHORDATA-MAMMALS incomplete incomplete Model organism None USA Public Ge00263 002864_GCAT 10116 12285 University of Iowa Eukaryota Chordata unclassified Suidae Sus Sus scrofa EUKARYAL Sus scrofa EST CHORDATA-MAMMALS incomplete USA Public Ge00199 002479_GCAT 9823 Univ of Illinois Univ of Illinois at Urbana-Champaign Beever JE http://www.ansci.uiuc.edu/faculty/MeetOurFaculty/faculty_pages/index.cfm?ID=1158 Eukaryota Chordata unclassified Suidae Sus Sus scrofa EUKARYAL Sus scrofa EST CHORDATA-MAMMALS incomplete complete USA Public Ge00200 002480_GCAT 9823 12451 2489 NCBI, Univ of Missouri Univ of Missouri Monsanto Prather RS http://www.asrc.agri.missouri.edu/faculty/Prather.html Eukaryota Chordata unclassified Tenrecidae Tenrec Tenrec ecaudatus EUKARYAL Tenrec ecaudatus tail-less tenrec Genome CHORDATA-MAMMALS incomplete USA Public Gi01176 002481_GCAT 94439 Broad Institute NIH-NHGRI Eukaryota Chordata Scandentia Tupaiidae Tupaia Tupaia belangeri EUKARYAL Tupaia belangeri EST CHORDATA-MAMMALS incomplete Argentina Public Ge00201 002482_GCAT 37347 13938 IIB-UNSAM IIB-UNSAM Sanchez DO dsanchez@iib.unsam.edu.ar unclassified unclassified unclassified unclassified unclassified unclassified EUKARYAL Ape Genome CHORDATA-PRIMATES incomplete Japan Public Gi00030 002483_GCAT National Institute of Genetics, Japan National Institute of Genetics, Japan Saitou N http://sayer.lab.nig.ac.jp/~saitou/index.html Eukaryota Chordata Primates Lemuridae Lemur Lemur catta EUKARYAL Lemur catta ABI Genome CHORDATA-PRIMATES incomplete USA Public Gi01146 002484_GCAT 9447 12897 NISC-NIH Broad Institute NIH-NHGRI Eukaryota Chordata Primates Cercopithecidae Macaca Macaca mulatta EUKARYAL Macaca mulatta ABI 0.08x Genome CHORDATA-PRIMATES Draft incomplete Germany 40.7 Public Gi02162 002818_GCAT 9544 18243 AAGN01000000 IMB, Jena Eukaryota Chordata Primates Cercopithecidae Macaca Macaca fuscata EUKARYAL Macaca fuscata Genome CHORDATA-PRIMATES incomplete Japan Public Gi01822 002486_GCAT 9543 RIKEN MEXT Eukaryota Chordata Primates Galagidae Otolemur Otolemur garnettii EUKARYAL Otolemur garnettii ABI Genome-Regions CHORDATA-PRIMATES incomplete USA Public Gi01147 002487_GCAT 30611 13679 NCBI, NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata Didelphimorphia Didelphidae Didelphis Didelphis virginiana EUKARYAL Didelphis virginiana Genome-Regions CHORDATA-MAMMALS incomplete USA Public Gi01823 002488_GCAT 9267 NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata unclassified Bovidae Ovis Ovis aries EUKARYAL Ovis aries Genome-Regions CHORDATA-MAMMALS incomplete USA Public Gi01824 002489_GCAT 9940 NCBI NISC-NIH NIH-NHGRI Eukaryota Chordata Primates Hominidae Pongo Pongo pygmaeus EUKARYAL Pongo pygmaeus pygmaeus Genome-Regions CHORDATA-MAMMALS incomplete USA Public Gi01825 002490_GCAT 9602 NISC-NIH Broad Institute, NISC-NIH NIH-NHGRI Eukaryota Chordata Primates Hominidae Pongo Pongo pygmaeus EUKARYAL Pongo pygmaeus pygmaeus ABI 4x Genome-Regions CHORDATA-MAMMALS incomplete USA Public Gi02166 002827_GCAT 9602 12833 BCM-HGSC BCM-HGSC NIH-NHGRI Eukaryota Chordata Primates Hominidae Pongo Pongo pygmaeus EUKARYAL Pongo pygmaeus pygmaeus ABI 0.08x Genome CHORDATA-MAMMALS Draft incomplete Germany Public Gi02332 003054_GCAT 9600 18245 AAGM01000000 IMB, Jena Eukaryota Ascomycota Pleosporales Pleosporaceae Pyrenophora Pyrenophora tritici-repentis EUKARYAL Pyrenophora tritici-repentis Pt-1C-BFP ABI Genome FUNGI-ASCOMYCOTA Draft incomplete Pathogen Agricultural, Plant Pathogen, FGI Tan spot USA Public Gi02333 003055_GCAT 426418 18823 37800 AAXI00000000 Broad Institute Broad Institute Eukaryota Chordata Primates Cebidae Saimiri Saimiri boliviensis EUKARYAL Saimiri boliviensis boliviensis Genome-Regions CHORDATA-PRIMATES incomplete USA Public Gi01826 002491_GCAT 39432 NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata Primates Galagidae Otolemur Otolemur garnettii EUKARYAL Otolemur garnettii ABI Genome CHORDATA-PRIMATES Draft incomplete USA Public Gi01827 002492_GCAT 30611 16955 AAQR01000000 NCBI, Broad Institute Broad Institute NIH-NHGRI Eukaryota Chordata Primates Hominidae Gorilla Gorilla gorilla EUKARYAL Gorilla gorilla gorilla ABI Genome-Regions CHORDATA-PRIMATES incomplete USA Public Gi01828 002493_GCAT 9593 NISC-NIH NIH-NHGRI Eukaryota Chordata Primates Hominidae Homo Homo sapiens EUKARYAL Homo sapiens JD Watson 454 Genome CHORDATA-PRIMATES Draft complete Caucasian, Male, Mesophile, Aerobe Medical 36 USA Public Gi02338 003060_GCAT 9606 454 Life Sciences, BCM-HGSC Eukaryota Basidiomycota Agaricales Tricholomataceae Lentinula Lentinula edodes EUKARYAL Lentinula edodes L-54 ABI Genome FUNGI-BASIDIOMYCOTA incomplete Cellulose degrader, Lignin degrader Biotechnological, Biofuels, Bioenergy None China Public Gi02161 002815_GCAT 5353 17581 33000 8 0 Chinese Univ of Hong Kong Eukaryota Chordata Primates Hominidae Homo Homo sapiens EUKARYAL Home sapiens EST CHORDATA-PRIMATES incomplete Germany Public Ge00227 002814_GCAT 9606 10874 GHGP, MIPS German Consortium Eukaryota Chordata Primates Hominidae Homo Homo sapiens EUKARYAL Home sapiens EST CHORDATA-PRIMATES incomplete Japan Public Ge00226 002813_GCAT 9606 10875 Kazusa DNA Research Institute Kazusa DNA Research Institute Eukaryota Chordata Primates Hominidae Gorilla Gorilla gorilla EUKARYAL Gorilla gorilla gorilla ABI Genome CHORDATA-PRIMATES Draft incomplete Germany Public Gi02158 002810_GCAT 9593 18247 AAGL00000000 IMB, Jena Eukaryota Chordata Testudines Testudinidae Gopherus Gopherus agassizii EUKARYAL Gopherus agassizii Genome-Regions CHORDATA-REPTILES incomplete USA Public Gi01829 002494_GCAT 38772 NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata Primates Lemuridae Eulemur Eulemur macaco EUKARYAL Eulemur macaco macaco Genome-Regions CHORDATA-PRIMATES incomplete USA Public Gi01830 002495_GCAT 30603 NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata Primates Cheirogaleidae Microcebus Microcebus murinus EUKARYAL Microcebus murinus ABI 2x Genome CHORDATA-PRIMATES Draft incomplete USA Public Gi01831 002496_GCAT 30608 19967 ABDC00000000 NISC-NIH, Broad Institute Broad Institute, NISC-NIH NIH-NHGRI Eukaryota Chordata Primates Pitheciidae Callicebus Callicebus moloch EUKARYAL Callicebus moloch Genome-Regions CHORDATA-PRIMATES incomplete USA Public Gi01832 002497_GCAT 9523 NISC-NIH NISC-NIH, TIGR NIH-NHGRI Eukaryota Chordata Primates Cercopithecidae Papio Papio hamadryas EUKARYAL Papio hamadryas Genome-Regions CHORDATA-PRIMATES incomplete USA Public Gi01378 002498_GCAT 9557 20425 BCM-HGSC NIH-NHGRI Eukaryota Chordata Chiroptera Rhinolophidae Rhinolophus Rhinolophus ferrumequinum EUKARYAL Rhinolophus ferrumequinum Genome-Regions CHORDATA-MAMMALS incomplete USA Public Gi01618 002499_GCAT 59479 13678 29 0 NISC-NIH NISC-NIH NIH-NHGRI Eukaryota Chordata Primates Cercopithecidae Papio Papio anubis EUKARYAL Papio anubis Genome CHORDATA-PRIMATES incomplete USA Public Gi00429 002500_GCAT 9555 12966 NCBI, Univ of Oklahoma Univ of Oklahoma Roe B broe@ou.edu Eukaryota Chordata Primates Hominidae Pan Pan troglodytes EUKARYAL Pan troglodytes Genome-Regions CHORDATA-PRIMATES incomplete USA Public Gi00425 002501_GCAT 9598 13698 NCBI Celera Genomics Eukaryota Chordata Primates Hominidae Pongo Pongo pygmaeus EUKARYAL Pongo pygmaeus abelii ABI 3x Genome CHORDATA-PRIMATES incomplete USA Public Gi00749 002503_GCAT 9601 Washington Univ Washington Univ NIH-NHGRI Warren W http://genome.wustl.edu/Bio/email_data.cgi?staff=Wes%20Warren Eukaryota Chordata Scandentia Tupaiidae Tupaia Tupaia belangeri EUKARYAL Tupaia belangeri ABI 2x Genome CHORDATA-MAMMALS Draft incomplete USA Public Gi01833 002504_GCAT 37347 13971 AAPY01000000 NISC-NIH, Broad Institute Broad Institute NIH-NHGRI Eukaryota Platyhelminthes Cyclophyllidea Taeniidae Echinococcus Echinococcus granulosus EUKARYAL Echinococcus granulosus EST PLATYHELMINTHES incomplete United Kingdom Public Ge00202 002505_GCAT 6210 12619 60000 Sanger Institute Sanger Institute Wellcome Trust Johnston D daj@nhm.ac.uk Eukaryota Platyhelminthes Cyclophyllidea Taeniidae Echinococcus Echinococcus multilocularis EUKARYAL Echinococcus multilocularis EST PLATYHELMINTHES incomplete United Kingdom Public Ge00269 002871_GCAT 6211 60000 Sanger Institute Sanger Institute Wellcome Trust Berriman M mb4@sanger.ac.uk Eukaryota Platyhelminthes Echinostomida Fasciolidae Fasciola Fasciola hepatica EUKARYAL Fasciola hepatica EST PLATYHELMINTHES incomplete Parasite Medical, Human Pathogen Fascioliasis Host United Kingdom Public Ge00203 002506_GCAT 6192 12611 15000 Sanger Institute Sanger Institute Johnston D daj@nhm.ac.uk Eukaryota Platyhelminthes Cyclophyllidea Taeniidae Taenia Taenia solium EUKARYAL Taenia solium ABI, Clone-based 10x Genome PLATYHELMINTHES incomplete Pathogen Medical, Human Pathogen, Swine Pathogen, Animal Pathogen Cysticercosis Host Mexico Public Gi01945 002569_GCAT 6204 16816 260000 NCBI Univ Nacional Autonoma de Mexico Eukaryota Platyhelminthes Cyclophyllidea Taeniidae Taenia Taenia solium EUKARYAL Taenia solium EST PLATYHELMINTHES incomplete Pathogen Medical, Human Pathogen, Swine Pathogen, Animal Pathogen Cysticercosis Host Mexico Public Ge00265 002866_GCAT 6204 NCBI Univ Nacional Autonoma de Mexico Laclettea, JP laclette@biomedicas.unam.mx Eukaryota unclassified Kinetoplastida Trypanosomatidae Trypanosoma Trypanosoma cruzi EUKARYAL Trypanosoma cruzi EST PROTISTS-EUGLENOZOA incomplete Pathogen, Parasite Medical, Human Pathogen American Trypanosomiasis, Chagas disease Sweden Public Ge00266 002867_GCAT 5693 5000 NCBI Uppsala Univ Eukaryota Platyhelminthes Strigeidida Schistosomatidae Schistosoma Schistosoma guineensis EUKARYAL Schistosoma Genome PLATYHELMINTHES incomplete International Public Gi00546 002507_GCAT 6181 NHM WHO, UNDP, World Bank Schistosoma Genome Network Johnston D daj@nhm.ac.uk Eukaryota Platyhelminthes Strigeidida Schistosomatidae Schistosoma Schistosoma haematobium EUKARYAL Schistosoma haematobium EST PLATYHELMINTHES incomplete United Kingdom Public Ge00204 002508_GCAT 6185 12616 15000 Sanger Institute, Schisto Genome Network Sanger Institute Johnston D daj@nhm.ac.uk Eukaryota Platyhelminthes Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum EUKARYAL Schistosoma japonicum EST PLATYHELMINTHES incomplete China Public Ge00205 002509_GCAT 6182 12600 NCBI Chinese National Human Genome Center at Shanghai, Institute of Parasitic Diseases Eukaryota Platyhelminthes Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni EUKARYAL Schistosoma mansoni EST PLATYHELMINTHES complete complete Brazil Public Ge00193 002510_GCAT 6183 12602 163000 NCBI, ONSA, ParaDB ONSA FAPESP Verjovski-Almeida S verjo@iq.usp.br Eukaryota Platyhelminthes Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni EUKARYAL Schistosoma mansoni Puerto Rican ABI 8x Genome PLATYHELMINTHES incomplete International Public Gi00547 002511_GCAT 6183 12598 270000 8 0 NCBI, TIGR, TIGR, Sanger Institute TIGR, Sanger Institute NIH-NIAID TIGR smansoni@tigr.org Eukaryota Platyhelminthes Tricladida Dugesiidae Schmidtea Schmidtea mediterranea EUKARYAL Schmidtea mediterranea hermaphroditic EST PLATYHELMINTHES incomplete USA Public Ge00208 002512_GCAT 79327 12584 27000 UIUC Univ of Utah Newmark P http://www.life.uiuc.edu/newmark/ Eukaryota Platyhelminthes Tricladida Dugesiidae Schmidtea Schmidtea mediterranea EUKARYAL Schmidtea mediterranea asexual EST PLATYHELMINTHES incomplete USA Public Ge00133 002513_GCAT 79327 12584 SmedDb Univ of Utah, Washington Univ Sanchez Alvarado A http://www.neuroscience.med.utah.edu/Faculty/Sanchez.html Eukaryota Platyhelminthes Tricladida Dugesiidae Schmidtea Schmidtea mediterranea EUKARYAL Schmidtea mediterranea S2F2 Genome PLATYHELMINTHES Draft Model organism None USA Public Gi00994 002514_GCAT 79327 12585 4 AAWT01000000 NCBI, Washington Univ, NHGRI Washington Univ NIH-NHGRI Clifton S http://genome.wustl.edu/Bio/email_data.cgi?staff=Sandra%20Clifton Eukaryota Hemichordata unclassified Harrimaniidae Saccoglossus Saccoglossus kowalevskii EUKARYAL Saccoglossus kowalevskii ABI 6x Genome HEMICHORDATA incomplete USA Public Gi00995 002515_GCAT 10224 12887 NCBI, NHGRI BCM-HGSC NIH-NHGRI Eukaryota Chlorophyta Chlorellales Chlorellaceae Chlorella Chlorella sp. NC64A EUKARYAL Chlorella sp NC64A ABI Genome PLANTS-CHLOROPHYTA incomplete None USA Public Gi01362 002516_GCAT 310507 18711 40000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Streptophyta Brassicales Caricaceae Carica Carica papaya EUKARYAL Carica papaya Genome PLANTS-STREPTOPHYTA incomplete None USA Public Gi01929 002553_GCAT 3649 16261 372000 9 0 Papaya Genome Consortium ASGPB http://cgpbr.hawaii.edu/contact/ Eukaryota Chlorophyta Chlorellales Chlorellaceae Chlorella Chlorella vulgaris EUKARYAL Chlorella vulgaris C-169 ABI Genome PLANTS-CHLOROPHYTA incomplete None USA Public Gi01363 002517_GCAT 3077 18715 40000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Streptophyta Charales Characeae Chara Chara vulgaris EUKARYAL Chara vulgaris Genome PLANTS-STREPTOPHYTA incomplete None Canada Public Gi01930 002554_GCAT 55564 12181 Univ Laval, Genome Sciences Centre Eukaryota unclassified Dictyosteliida unclassified Dictyostelium Dictyostelium purpureum EUKARYAL Dictyostelium purpureum QXDP1 Genome PROTISTS-MYCETOZOA incomplete None USA Public Gi01364 002518_GCAT 5786 34000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Chlorophyta Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina EUKARYAL Dunaliella salina UTEX, CCAP 19/18 Genome PLANTS-CHLOROPHYTA incomplete None USA Public Gi01365 002519_GCAT 3046 18609 130000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Bacillariophyta unclassified Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia multiseries EUKARYAL Pseudo-nitzschia multiseries CLN-47 Genome PROTISTS-BACILLARIOPHYTA incomplete None USA Public Gi01366 002520_GCAT 37319 25000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Basidiomycota Agaricales Schizophyllaceae Schizophyllum Schizophyllum commune EUKARYAL Schizophyllum commune Genome FUNGI-BASIDIOMYCOTA incomplete Pathogen, Sporulating Medical, Human Pathogen Human mycosis USA Public Gi01367 002521_GCAT 5334 38000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Basidiomycota Malasseziales unclassified Malassezia Malassezia globosa EUKARYAL Malassezia globosa CBS 7966 ABI 7x Genome FUNGI-BASIDIOMYCOTA complete complete Lipophilic, Opportunistic Pathogen Medical, Human Pathogen Systemic infection, Skin disorders, Psoriasis, Dermatitis, Dandruff Cutaneous microflora, Host USA Proprietary Gi01941 002565_GCAT 425265 18719 9000 AAYY00000000 Procter & Gamble Eukaryota Basidiomycota Malasseziales unclassified Malassezia Malassezia restricta EUKARYAL Malassezia restricta CBS 7877 ABI 1x Genome FUNGI-BASIDIOMYCOTA complete complete Lipophilic, Opportunistic Pathogen Medical, Human Pathogen Systemic infection, Skin disorders, Psoriasis, Dermatitis, Dandruff Cutaneous microflora, Host USA Proprietary Gi01942 002566_GCAT 76775 18721 Procter & Gamble Eukaryota Ascomycota Hypocreales Hypocreaceae Trichoderma Trichoderma atroviride EUKARYAL Trichoderma atroviride IMI 206040 ABI Genome FUNGI-ASCOMYCOTA incomplete Fungicide, Psychrotolerant Medical, Biocontrol None Alaska USA Public Gi01368 002522_GCAT 452589 19867 40000 ABDG00000000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Ascomycota Pleosporales Pleosporaceae Cochliobolus Cochliobolus heterostrophus EUKARYAL Cochliobolus heterostrophus Genome FUNGI-ASCOMYCOTA incomplete None USA Public Gi01754 002523_GCAT 5016 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Neocallimastigomycota Neocallimastigales Neocallimastigaceae Orpinomyces Orpinomyces sp. PC-2 EUKARYAL Orpinomyces sp PC-2 Genome FUNGI-CHYTRIDIOMYCOTA incomplete USA Public Gi01756 002524_GCAT 50059 20000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Basidiomycota Sporidiobolales unclassified Rhodosporidium Rhodosporidium babjevae EUKARYAL Rhodosporidium babjevae WP1 Genome FUNGI-BASIDIOMYCOTA incomplete USA Public Gi01757 002525_GCAT 86837 20000 2 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Basidiomycota Corticiales Corticiaceae Phanerochaete Phanerochaete carnosa EUKARYAL Phanerochaete carnosa HHB-10118-sp Genome FUNGI-BASIDIOMYCOTA incomplete USA Public Gi01758 002526_GCAT 231932 35000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota unclassified Mucorales Mucoraceae Mucor Mucor circinelloides EUKARYAL Mucor circinelloides CBS277.49 (-) Genome FUNGI-ZYGOMYCOTA incomplete USA Public Gi01759 002527_GCAT 70416 36000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Ascomycota unclassified unclassified Acremonium Acremonium sp. YT03 EUKARYAL Acremonium alcalophilum ATCC 90507 ATCC 90507, JCM 7366, CBS 114.92, IMI 351927, PA-2M Genome FUNGI-ASCOMYCOTA incomplete Alkalophile, Cellulolytic Biotechnological None USA Public Gi01760 002528_GCAT 5043 40000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Ascomycota Sordariales Chaetomiaceae Corynascus Corynascus heterothallicus EUKARYAL Corynascus (Sporotrichum) heterothallicus (thermophilum) ATCC42464 ATCC 42464 Genome FUNGI-ASCOMYCOTA incomplete USA Public Gi01755 002529_GCAT 78579 43000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Basidiomycota Boletales Serpulaceae Serpula Serpula lacrymans EUKARYAL Serpula lacrymans Genome FUNGI-BASIDIOMYCOTA incomplete USA Public Gi01745 002530_GCAT 341189 25000 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Ascomycota Sordariales Chaetomiaceae Thielavia Thielavia terrestris EUKARYAL Thielavia terrestris NRRL 8126 Genome FUNGI-ASCOMYCOTA incomplete None USA Public Gi01746 002531_GCAT 35720 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Pogonophora Riftiida Riftiidae Riftia Riftia pachyptila EUKARYAL Riftia pachyptila Microbes EST POGONOPHORA incomplete Symbiont Deep sea, Hydrothermal vent USA Public Ge00215 002532_GCAT 6426 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Nematoda Tylenchida Heteroderidae Heterodera Heterodera glycines EUKARYAL Heterodera glycines Genome NEMATODES incomplete Agricultural None USA Public Gi02144 002758_GCAT 51029 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota unclassified Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila EUKARYAL Tetrahymena thermophila SB210 (Micronucleus) Genome PROTISTS-ALVEOLATA incomplete Biotechnological, Protein production None Aquatic USA Public Gi02108 002759_GCAT 312017 NCBI Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Streptophyta Marchantiales Marchantiaceae Marchantia Marchantia polymorpha EUKARYAL Marchantia polymorpha Genome PLANTS-STREPTOPHYTA incomplete None USA Public Gi02109 002760_GCAT 3197 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Basidiomycota Agaricales Agaricaceae Agaricus Agaricus bisporus EUKARYAL Agaricus bisporus JB137-s8 Genome FUNGI-BASIDIOMYCOTA incomplete None USA Public Gi02110 002761_GCAT 5341 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Basidiomycota Agaricales Agaricaceae Agaricus Agaricus bisporus EUKARYAL Agaricus bisporus H97 Genome FUNGI-BASIDIOMYCOTA incomplete incomplete None USA Public Gi02534 003260_GCAT 5341 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota unclassified Phaeocystales Phaeocystaceae Phaeocystis Phaeocystis antarctica EUKARYAL Phaeocystis antarctica CCMP1374 Genome PROTISTS-HAPTOPHYCEAE incomplete Ecological None Aquatic USA Public Gi02111 002762_GCAT 33657 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota unclassified Phaeocystales Phaeocystaceae Phaeocystis Phaeocystis globosa EUKARYAL Phaeocystis globosa Genome PROTISTS-HAPTOPHYCEAE incomplete None USA Public Gi02112 002763_GCAT 33658 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Basidiomycota Boletales Paxillaceae Paxillus Paxillus involutus EUKARYAL Paxillus involutus Genome FUNGI-BASIDIOMYCOTA incomplete None USA Public Gi02113 002764_GCAT 71150 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Streptophyta Poales Poaceae Setaria Setaria italica EUKARYAL Setaria italica Genome PLANTS-STREPTOPHYTA incomplete Agricultural None USA Public Gi02114 002765_GCAT 4555 16881 NCBI Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Streptophyta Myrtales Myrtaceae Eucalyptus Eucalyptus raveretiana EUKARYAL Eucalyptus Genome PLANTS-STREPTOPHYTA incomplete Agricultural None USA Public Gi02115 002766_GCAT 3932 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota unclassified Bangiales Bangiaceae Porphyra Porphyra purpurea EUKARYAL Porphyra purpurea Genome PROTISTS-RHODOPHYTA incomplete Biotechnological, Bioremediation None USA Public Gi02116 002767_GCAT 2787 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Streptophyta Lamiales Lamiaceae Leonotis Leonotis leonurus EUKARYAL Leonotis nepetifolia Genome PLANTS-STREPTOPHYTA incomplete incomplete None USA Public Gi02264 002979_GCAT 378903 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org Eukaryota Chordata Rodentia Cricetidae Peromyscus Peromyscus polionotus EUKARYAL Peromyscus polionotus subgrisieus PO Genome CHORDATA-MAMMALS incomplete incomplete None USA Public Gi02265 002980_GCAT 369710 Joint Genome Institute DOE Richardson P microbes@cuba.jgi-psf.org