SUPERKINGDOM PHYLUM CLASS ORDER FAMILY GENUS SPECIES DOMAIN ORGANISM NAME STRAIN SEROVAR/BIOVAR COMMON NAME NCBI PROJECT NAME CULTURE COLLECTION TYPE STRAIN GOLDSTAMP OLD GOLDSTAMP PROJECT TYPE PROJECT STATUS AVAILABILITY SEQUENCING CENTERS FUNDING CONTACT NAME CONTACT EMAIL CONTACT URL LOCUS TAG COMPLETION DATE PUBLICATION PROJECT RELEVANCE NCBI TAXON ID NCBI PROJECT ID NCBI ARCHIVE ID SHORT READS ARCHIVE ID GCAT_ID HMP ID HOMD ID STRAININFO ID GREENGENES OBJECT ID IMG OBJECT ID GENOME DATA SEQUENCING STATUS SEQUENCING QUALITY COMMENTS LIBRARY METHOD READS COUNT VECTOR ASSEMBLY METHOD SEQUENCING DEPTH GENE CALLING METHOD CONTIG COUNT SIZE(kb) ORFS CHROMOSOME COUNT PLASMID COUNT GC Content SEQUENCING METHOD SEQUENCING COUNTRY ISOLATION SITE ISOLATION SOURCE ISOLATION COMMENTS COLLECTION DATE ISOLATION COUNTRY ISOLATION PUBMED ID GEOGRAPHIC LOCATION LATITUDE LONGITUDE ALTITUDE DEPTH HOST NAME HOST TAXON ID HOST GENDER HOST AGE HOST RACE HOST HEALTH HOST MEDICATION HOST SPECIFICITY BODY SAMPLE SITE BODY PRODUCT BODY SAMPLE SUBSITE HOST COMMENTS OXYGEN REQUIREMENT CELL SHAPE SPORULATION PRESSURE TEMPERATURE RANGE SALINITY PH CELL DIAMETER CELL LENGTH COLOR GRAM STAINING BIOTIC RELATIONSHIPS SYMBIOTIC INTERACTION SYMBIOTIC RELATIONSHIP SYMBIONT NAME SYMBIONT TAXON ID CELL ARRANGEMENT DISEASE HABITAT TEMPERATURE METABOLISM MOTILITY PHENOTYPE ENERGY SOURCE Bacteria Firmicutes Bacilli Bacillales Bacillaceae Geobacillus Geobacillus sp. Y412MC10 BACTERIAL Geobacillus sp. Y412MC10 Y412MC10 Geobacillus sp. Y412MC10 Gi02010 Genome incomplete Public DOE Joint Genome Institute DOE Mead D dmead@lucigen.com GYMC10DRAFT Biotechnological 481743 27777 002639_GCAT 352907 642791600 NZ_ABRG00000000 Draft 7160 6639 51 USA Facultative Rod-shaped Sporulating Mesophile gram+ Free living None Motile Chemoorganotroph Bacteria Bacteroidetes Flavobacteria Flavobacteria bacterium MS024-3C BACTERIAL Flavobacteria sp. MS024-3C MS024-3C Flavobacteria bacterium MS024-3C Gi02017 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Environmental 487797 28051 002646_GCAT 643886079 NZ_ABVW00000000 Draft Single Amplified Genome 21 1515 1410 38 454, Dideoxysequencing, WGS USA "Coastal seawater from Boothbay Harbor, Maine" DNA for sequencing was obtained by whole-genome multiple displacement amplification USA Coastal seawater from Boothbay Harbor, Maine 43.849784 -69.6266 Aerobe Rod-shaped Mesophile gram- Free living None Fresh water Motile Heterotroph Bacteria Bacteroidetes Flavobacteria Flavobacteria bacterium MS024-2A BACTERIAL Flavobacteria sp. MS024-2A MS024-2A Flavobacteria bacterium MS024-2A Gi02016 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Environmental 487796 28049 002645_GCAT 643886118 NZ_ABVV00000000 Draft Single Amplified Genome 17 1905 1809 35 Dideoxysequencing, 454, WGS USA "Coastal seawater from Boothbay Harbor, Maine" high-speed fluorescence-activated cell sorting DNA for sequencing was obtained by whole-genome multiple displacement amplification USA Coastal seawater from Boothbay Harbor, Maine 43.849784 -69.6266 Aerobe Rod-shaped Mesophile gram- Free living None Fresh water Motile Heterotroph Bacteria Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Paenibacillus sp. JDR-2 BACTERIAL Paenibacillus sp. JDR-2 JDR-2 Paenibacillus sp. JDR-2 Gc01093 Gi02023 Genome Complete and Published Public DOE Joint Genome Institute DOE Preston J jpreston@ufl.edu Pjdr 2009-07-02 Unpublished Biofuels, Ethanol production, Biotechnological 324057 20399 002652_GCAT 270979 641736167 NC_012914 Complete Level 6: Finished Prodigal, GenePRIMP 7184 6414 1 50 Sanger, 454 USA Sweet gum stem wood buried in surface soil Sweet gum stem wood buried in surface soil Aerobe Rod-shaped Sporulating Mesophile gram+ Free living None Host, Wood 30 Methylglucuronoxylan utilization Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Pseudonocardiaceae Saccharomonospora Saccharomonospora viridis BACTERIAL Saccharomonospora viridis P101, DSM 43017 P101, DSM 43017 Saccharomonospora viridis DSM 43017 CBS 484.63, JCM 3036, DSM 43017, ATCC 15386 Yes Gc01088 Gi02228 Genome Complete and Published Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Svir 2009-08-26 SIGS in press GEBA, Tree of Life, Medical, Human Pathogen 471857 20835 002928_GCAT 0 NC_013159 Complete Level 6: Finished 8Kb, Fosmid pMCL200, pcc1Fos 12.9x Sanger Genemark 4.6b 4308 3790 1 0 67.3 Sanger USA Irish peat-bog at 250 cm depth before 1963 Irish peat 250 cm Aerobe Spore-shaped Sporulating Thermophile gram- Free living Hypersensitivity pneumonitis 55 Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica E98-0664 E98-0664 Typhi Salmonella enterica subsp. enterica serovar Typhi str. E98-0664 Gi02974 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J parkhill@sanger.ac.uk Medical, Human Pathogen 497973 28299 003706_GCAT 369572 642979341 NZ_CAAU00000000 Draft 10.8x 454 4716 0 51 454-GS20 United Kingdom Case of typhoid fever in Kenya in 1998 1998 Kenya Case of typhoid fever in Kenya in 1998 Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Typhoid fever Host 37 Motile Pathogen Chemoorganotroph unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Aquatic microbial communities from Yellowstone Obsidian Hot Spring from Yellowstone Obsidian Hot Spring Gm00163 Metagenome complete Public DOE Joint Genome Institute DOE Mead D dmead@lucigen.com 37787 004974_GCAT 0 lucy / pga 0 0 0 USA Yellowstone National Park, Montana, USA USA Yellowstone National Park, Montana, USA 44.6100594 -110.4388217 Hyperthermophile 6.37 Hot spring Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XVI. Incertae Sedis Carboxydocella BACTERIAL Carboxydocella thermautotrophica 41, DSM 12326 41, DSM 12326 VKM B-2282, DSM 12326 Yes Gi03013 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org 178899 003749_GCAT 36649 0 0 0 46 Sanger, 454 USA "Cyanobacterial mat, mud and water; Kamchatka Peninsula, Geyzer Valley" Russia Kamchatka Peninsula, Geyzer Valley 54.431 160.139 Anaerobe Rod-shaped Thermophile 7.0 gram+ Free living Chains 58 Motile Chemolithoautotroph Bacteria Proteobacteria Deltaproteobacteria Desulfarculales Desulfarculaceae Desulfarculus Desulfarculus baarsii BACTERIAL Desulfarculus Konstanz, DSM 2075 Konstanz, DSM 2075 ATCC 33931, VKM B-1802, DSM 2075 Yes Gi03014 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 644282 37955 003750_GCAT 0 0 0 0 Sanger, 454 USA Ditch mud; Germany Germany Ditch mud; Germany Anaerobe Mesophile gram- Free living Mud Bacteria Proteobacteria Deltaproteobacteria Syntrophobacterales Syntrophaceae Desulfobacca BACTERIAL Desulfobacca acetoxidans DSM 11109 DSM 11109 DSM 11109 Yes Gi03015 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 60893 003751_GCAT 10776 0 0 0 0 Sanger, 454 USA Freshwater pond Freshwater pond Oval-shaped Mesophile 1.3 x 1.9-2.2 microns gram- Free living Fresh water, Fresh water 27 Nonmotile Sulfate reducer Bacteria Proteobacteria Deltaproteobacteria Syntrophobacterales Syntrophaceae Desulfomonile BACTERIAL Desulfomonile tiedjei DCB-1, DSM 06799 DCB-1, DSM 06799 DSM 06799, ATCC 49306 Yes Gi03016 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Tree of Life, GEBA 2358 003752_GCAT 10780 0 0 0 0 USA Sewage sludge; USA USA Sewage sludge; USA Anaerobe Mesophile gram- Free living None Sludge 37 Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfonatronumaceae Desulfonatronum BACTERIAL Desulfonatronum lacustre Z-7951, DSM 10312 Z-7951, DSM 10312 DSM 10312 Yes Gi03017 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 66849 003753_GCAT 10408 0 0 0 0 Sanger, 454 USA "Mud from alkaline Lake Khadyn, Central Asia, Tuva" Russia Lake Khadyn, Central Asia, Tuva 51.333265 94.52413 Anaerobe Mesophile gram- Free living None Fresh water, Mud 37 Alkaliphile, Sulfate reducer Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Desulfonispora Desulfonispora thiosulfatigenes BACTERIAL Desulfonispora thiosulfatigenes GKNTAUT , DSM 11270 GKNTAUT , DSM 11270 ATCC 700533, DSM 11270 Yes Gi03018 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 656914 39141 003754_GCAT 33780 0 ferment the organosulfonate taurine (2-aminoethanesulfonate) quantitatively to acetate, ammonia and thiosulfate 0 0 52 USA "Sewage plant in Konstanz, Germany" Germany Sewage plant in Konstanz, Germany 47.661279 9.172061 Anaerobe Rod-shaped Sporulating Mesophile 7.0 2-5x0.7-10 um gram+ Free living None Salt marsh 30 Taurine fermenter Motile Bacteria Proteobacteria Deltaproteobacteria Desulfurellales Desulfurellaceae Desulfurella BACTERIAL Desulfurella acetivorans A63, DSM 5264 A63, DSM 5264 ATCC 51451, DSM 5264 Yes Gi03019 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Biotechnological, Tree of Life, GEBA 33002 003755_GCAT 10570 0 0 0 0 USA "Thermophilic spring; Kamchatka peninsula, Uzon vulcano, Russia" Russia Kamchatka peninsula, Uzon vulcano 54.5 159.97 Anaerobe Thermophile gram- Free living None Fresh water, Hot spring 55 Sulfur reducer Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Flexibacteraceae Flexibacter BACTERIAL Flexibacter polymorphus DSM 09678 DSM 09678 DSM 09678, NBRC 16703, IFO 16703, ATCC 27820 Yes Gi03020 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 1001 003756_GCAT 58628 0 0 0 0 USA "Decaying ascidian (Didemnum sp.); Mexico, La Paz" Mexico Decaying ascidian (Didemnum sp.); Mexico, La Paz 24.950001 -100.461304 Mesophile gram- Free living None 30 Bacteria Firmicutes Clostridia Clostridiales Graciibacteraceae Gracilibacter BACTERIAL Gracilibacter thermotolerans JW/YJL-S1, DSM 17427 JW/YJL-S1, DSM 17427 DSM 17427, ATCC BAA-1219 Yes Gi03022 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 342666 003758_GCAT 172466 0 0 0 0 USA Sediment ; USA USA Sediment ; USA Anaerobe Mesophile gram+ Free living Sediment Bacteria Proteobacteria Deltaproteobacteria Desulfurellales Desulfurellaceae Hippea BACTERIAL Hippea maritima MH2, DSM 10411 MH2, DSM 10411 DSM 10411 Yes Gi03040 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 84405 003779_GCAT 51780 0 0 0 40.4 USA "Marine sediment from hot vent of tidal zone; Papua New Guinea, Matupi Harbour" New Guinea Papua New Guinea, Matupi Harbour -4.233333 152.2 Anaerobe Rod-shaped Thermophile 5.8 - 6.2 gram- Free living None Marine 55 Motile Sulfur reducer Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Thiotrichaceae Thiothrix BACTERIAL Thiothrix nivea JP2, DSM 05205 JP2, DSM 05205 ATCC 35100, DSM 05205 Yes Gi03023 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 1031 003759_GCAT 7655 0 0 0 0 USA Mesophile gram- Free living None Bacteria Proteobacteria Epsilonproteobacteria Thioreductor BACTERIAL Thioreductor micantisoli DSM 16661 DSM 16661 DSM 16661, JCM 12457 Yes Gi03024 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 269253 003760_GCAT 106632 0 0 0 0 USA "Hydrothermal sediments; Iheya North in the Mid-Okinawa Trough, Japan" Japan Iheya North in the Mid-Okinawa Trough, Japan Anaerobe Mesophile gram- Free living None Sediment, Hydrothermal vent 32 Bacteria Aquificae Aquificae (class) Aquificales Aquificaceae Hydrogenobacter BACTERIAL Hydrogenobacter thermophilus TK-6, DSM 06534 TK-6, DSM 06534 IAM 12695, DSM 06534 Gi03025 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 940 003761_GCAT 1208 0 0 0 45 USA Hot springs Hot springs Thermophile gram- Free living None 70 Hydrogen oxidizer Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Flexibacteraceae Hymenobacter Hymenobacter roseosalivarius BACTERIAL Hymenobacter roseosalivarius AA-718, DSM 11622 AA-718, DSM 11622 DSM 11622 Yes Gi03026 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 645990 38115 003762_GCAT 2602 0 0 0 0 USA Soil sample; Antarctica Antarctica Psychrophile gram- Free living None Sand, Soil 9 Archaea Crenarchaeota Thermoprotei Desulfurococcales Desulfurococcaceae Ignisphaera Ignisphaera aggregans ARCHAEAL Ignisphaera aggregans AQ1.S1, DSM 17230 AQ1.S1, DSM 17230 Ignisphaera aggregans DSM 17230 JCM 13409, DSM 17230 Yes Gi03027 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 583356 33361 003763_GCAT 151069 0 0 0 52.9 Sanger, 454 USA hot springs in Rotorua and Tokaanu, New Zealand New Zealand 16627639 hot springs in Rotorua and Tokaanu, New Zealand Anaerobe Coccus-shaped Hyperthermophile 6.4 gram- Free living Clusters None Hot spring, Fresh water 92 Acidophile Heterotroph Eukaryota Chaetognatha Phragmophora Spadellidae Spadella Spadella cephaloptera EUKARYAL Spadella cephaloptera Ge00289 EST incomplete Public Genoscope Wincker P pwincker@genoscope.cns.fr 52888 003764_GCAT 0 0 0 0 France Eukaryota Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum EUKARYAL Phaeodactylum tricornutum Ge00290 EST incomplete Public Genoscope Katinka M mkatinka@genoscope.cns.fr 2850 003765_GCAT 0 100000 0 0 France cells grown under 10 different conditions cells grown under 10 different conditions Eukaryota Chordata Actinopterygii Cyprinodontiformes Poeciliidae Xiphophorus EUKARYAL Xiphophorus maculatus Gi03028 Genome-Regions incomplete Public Genoscope Samain S samain@genoscope.cns.fr 8083 003766_GCAT 0 0 0 0 BAC clones France Eukaryota Streptophyta Malvales Malvaceae Theobroma EUKARYAL Theobroma cacao Ge00291 EST incomplete Public Genoscope Wincker P pwincker@genoscope.cns.fr 3641 003767_GCAT 0 100000 0 0 France Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Edwardsiella Edwardsiella tarda BACTERIAL Edwardsiella tarda EIB202 EIB202 Edwardsiella tarda EIB202 Gi03029 Genome incomplete Public Chinese National Human Genome Center at Shanghai Fish Pathogen, Medical, Human Pathogen 498217 28539 003768_GCAT 0 0 0 0 China Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Wound infection, Septicemia Human intestinal microflora, Host Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni jejuni BH-01-0142 BH-01-0142 Campylobacter jejuni subsp. jejuni BH-01-0142 Gi03030 Genome incomplete Public NMRC Medical 482628 27797 003769_GCAT 642979315 NZ_ABKD00000000 Draft 118 106 77 USA clinical isolate from a patient in Thailand Thailand clinical isolate from a patient in Thailand Homo sapiens Patient Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Chains, Singles None Food, Host Motile Non-Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni jejuni CG8421 CG8421 Campylobacter jejuni subsp. jejuni CG8421 Gi03031 Genome incomplete Public NMRC Guerry P patricia.guerry@med.navy.mil Medical 478547 21037 003770_GCAT 642979372 NZ_ABGQ00000000 Draft 1608 1512 30 USA clinical isolate from a patient in Thailand Thailand clinical isolate from a patient in Thailand Homo sapiens Patient Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Chains, Singles None Host Motile Non-Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus pseudofirmus BACTERIAL Bacillus pseudofirmus OF4 OF4 Bacillus pseudofirmus OF4 Gi03032 Genome incomplete Public Allegheny-Singer Research Institute 398511 28811 003771_GCAT 20318 0 0 0 0 USA soil in New York State by alkaline enrichment cultures USA New York State Facultative Rod-shaped Sporulating Mesophile gram+ Free living None Soil Motile Alkaliphile Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Finegoldia Finegoldia magna BACTERIAL Finegoldia magna ATCC 29328 ATCC 29328 Finegoldia magna ATCC 29328 ATCC 29328 No Gc00725 Genome Complete and Published Public Wakayama Medical University, Kyushu Univ, Kitasato Univ JSPS Goto T t-goto@wakayama-med.ac.jp FMG 2008-02-29 DNA Research 15, 39-47 Medical, Human Pathogen 334413 18981 003772_GCAT 265948 641522627 NC_010376 Complete Phred/Phrap/Consed GenomeGambler 1.51, CRITICA, GeneHacker, Glimmer 2.0 1797 1933 1 1 32.3 Sanger Japan abdominal wound Homo sapiens Anaerobe Coccus-shaped Mesophile gram+ Free living Endocarditis, Opportunistic infection Host, Human skin Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum BoNT/A2 Kyoto-F BoNT/A2 Kyoto-F Gi03033 Genome incomplete Public Los Alamos National Laboratory, DOE Joint Genome Institute DOE, NIH-NIAID, DoD Brettin T brettin@lanl.gov Biothreat, Medical, Human Pathogen 536232 003773_GCAT 0 Draft Phrap Critica, Glimmer 2.0 0 0 0 Sanger USA case of infant botulism in Kyoto, Japan in 1978 1978 Japan case of infant botulism in Kyoto, Japan in 1978 35.011636 135.768029 Homo sapiens Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains, Pairs, Singles Botulism Soil 35 - 40 Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum Ba4 657 Ba4 657 Clostridium botulinum Ba4 str. 657 Gc01001 Gi03034 Genome Complete and Published Public Los Alamos National Laboratory, DOE Joint Genome Institute DOE, NIH-NIAID, DoD Brettin T brettin@lanl.gov CLJ 2009-05-01 Unpublished Biothreat, Medical, Human Pathogen 515621 29077 003774_GCAT 643692017 NC_012658 Complete Level 6: Finished Phrap Critica, Glimmer 2.0 2977 3785 1 2 28.2 Sanger USA Infant botulism case in Texas in 1976 Theresa Smith, theresa.smith@amedd.army.mil 1976 USA Texas Homo sapiens Obligate aerobe Rod-shaped Sporulating Mesophile gram- Free living Chains, Pairs, Singles Botulism Soil 35 - 40 Motile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium animalis BACTERIAL Bifidobacterium animalis lactis HN019 HN019 Bifidobacterium animalis subsp. lactis HN019 Gi03035 Genome incomplete Public Fonterra Research Centre Collett MA michael.collett@fonterra.com BIFLAC Medical 486409 28807 003775_GCAT 641736235 NZ_ABOT00000000 Draft Blac 1.0 31x 1915 1687 60.5 New Zealand probiotic strain Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Mesophile gram+ Free living None Human intestinal microflora, Host Nonmotile Probiotic Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bradyrhizobiaceae Oligotropha Oligotropha carboxidovorans BACTERIAL Oligotropha carboxidovorans OM5 OM5 Oligotropha carboxidovorans OM5 ATCC 49405, DSM 1227 Yes Gc00876 Gi03036 Genome Complete and Published Public Mississippi State Univ Lawrence ML lawrence@cvm.msstate.edu OcarO 2008-10-22 J. Bacteriology 190, 5531-5532 504832 28805 003776_GCAT 643348567 NC_011386 Complete 27x Glimmer 3745 3651 1 0 62.4 454 USA Rod-shaped Mesophile gram- Free living None Chemolithoautotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pseudotuberculosis BACTERIAL Yersinia pseudotuberculosis PB1/+ PB1/+ IB Yersinia pseudotuberculosis PB1/+ Gc00776 Gi03038 Genome Complete and Published Public DOE Joint Genome Institute DOE Nikolich M Mikeljon.Nikolich@NA.AMEDD.ARMY.MIL YPTS 2008-04-25 Unpublished Medical, Human Pathogen 502801 28745 003777_GCAT 74815 642555171 NC_010634 Complete 4695 4334 1 1 47.5 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Gastroenteritis Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia BACTERIAL Yersinia pseudotuberculosis YPIII YPIII O3 Yersinia pseudotuberculosis YPIII Gc00739 Gi03039 Genome Complete and Published Public Los Alamos National Laboratory, DOE Joint Genome Institute DOE Nikolich M Mikeljon.Nikolich@NA.AMEDD.ARMY.MIL YPK 2008-03-11 Unpublished Medical, Human Pathogen 633 28743 003778_GCAT 261941 641522661 NC_010465 Complete 4689 4396 1 0 47.5 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Gastroenteritis Host Motile Pathogen Heterotroph unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Gut microbiome of Mouse of Mouse with Diet-Induced Obesity Gut Microbiome of Mice with Diet-Induced Obesity Gm00128 Metagenome incomplete Public Washington Univ NIH Gordon JI jgordon@wustl.edu Medical 410661 28755 003780_GCAT 0 0 0 0 USA Cecal contents of seven wild-type C57BL/6J mice fed different types of diets Cecal contents of seven wild-type C57BL/6J mice fed different types of diets Mus musculus 10090 Diet-Induced Obesity Gastrointestinal tract None Host, Mouse Gut Bacteria Elusimicrobia Elusimicrobia (class) Elusimicrobiales Elusimicrobiaceae Elusimicrobium Elusimicrobium minutum BACTERIAL Elusimicrobium minutum Pei 191 Pei 191 Elusimicrobium minutum Pei191 Gc00773 Gi01567 Genome Complete and Published Public DOE Joint Genome Institute DOE Brune A brune@mpi-marburg.mpg.de Emin 2008-05-02 Appl Environ Microbiol. 75, 2841-9 Bioenergy, Tree of Life, Biotechnological 445932 19701 001008_GCAT 278595 642555127 NC_010644 Complete 1643 1596 1 0 39 USA Pachnoda ephippiata Pachnoda ephippiata Gut Anaerobe Mesophile gram- Symbiotic Endosymbiotic intracellular Protists None Termite gut, Host Biomass degrader Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia albertii BACTERIAL Escherichia albertii TW07627 TW07627 Escherichia albertii TW07627 Gi03041 Genome incomplete Public J. Craig Venter Institute Sutton GG gsutton@jcvi.org ESCAB Medical, Human Pathogen 502347 28851 003781_GCAT 264395 641736163 NZ_ABKX00000000 Draft 6.89x Sanger, 23.37x 454 64 4698 4889 49 454, Sanger USA Cases of diarrhea in children in Bangladesh Bangladesh Cases of diarrhea in children in Bangladesh Homo sapiens Child Patient with diarrhea Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs Diarrhea Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter baumannii BACTERIAL Acinetobacter baumannii AYE AYE Acinetobacter baumannii AYE Gc00732 Genome Complete and Published Public Genoscope Genoscope seqref@genoscope.cns.fr 2008-02-26 PLoS ONE 3, e1805 Medical, Human Pathogen 509173 28921 003787_GCAT 641522602 NC_010410 Complete 3936 3903 1 4 0 France Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Pneumonia, Nocosomial infection Host, Fresh water Nonmotile Pathogen Heterotroph, Chemoheterotroph Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas oryzae BACTERIAL Xanthomonas oryzae pv. oryzae PXO99A PXO99A pv. oryzae Xanthomonas oryzae pv. oryzae PXO99A Gc00778 Gi03042 Genome Complete and Published Public J. Craig Venter Institute, Univ of Maryland - CDCB USDA, NSF, NIH Salzberg S salzberg@umd.edu PXO 2008-05-19 BMC Genomics 9, 204 Plant Pathogen, Agricultural 360094 28127 003782_GCAT 302284 642555170 NC_010717 Complete 4.5 Kb, 10 Kb Celera Assembler Glimmer 3 5240 5048 1 0 63.6 USA "5-azacytidineresistant derivative of PXO99, isolated in Los Baqos and classified as Philippine race 6" Philippines 5-azacytidineresistant derivative of PXO99, isolated in Los Baqos and classified as Philippine race 6 Aerobe Rod-shaped Mesophile gram- Free living Rice blight Host Motile Pathogen Eukaryota Chordata Mammalia Primates Hominidae Homo EUKARYAL Homo sapiens Nigerian male Nigerian male Homo sapiens Gc00893 Gi03043 Genome Complete and Published Public Illumina Inc. Bentley DR dbentley@illumina.com 2008-11-06 Nature 456, 53-9 Medical 9606 29429 003783_GCAT 0 Complete 0 0 0 Illumina USA male Yoruba from Ibadan, Nigeria Nigeria Ibadan, Nigeria 7.378841 3.895278 Aerobe Mesophile 36 Male, African Eukaryota Chordata Mammalia Carnivora Ursidae Ailuropoda EUKARYAL Ailuropoda melanoleuca Gi03044 Genome incomplete Public Beijing Genomics Institute, Shenzhen 9646 38683 003784_GCAT 0 0 0 0 China China Eukaryota Chordata Mammalia Primates Hominidae Homo EUKARYAL Homo sapiens YanHuang No.1 YanHuang No.1 Gc00891 Gi03045 Genome Complete and Published Public Beijing Genomics Institute, Shenzhen Wang J wangj@genomics.org.cn 2008-11-06 Nature 456, 60-5 9606 003785_GCAT 0 Complete 34x 0 0 0 Illumina China peripheral venous blood peripheral venous blood Aerobe Mesophile 36 Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae BACTERIAL Ketogulonigenium sp. WB0104 WB0104 Gc00731 Genome Complete and Published Public State Key Laboratory, CHGB, NCPC Qi, J zdsys@vip.sina.com 2006-04-26 Chinese Science Bulletin 51, 941-945 Vitamin C production, Biotechnological 92944 003786_GCAT 0 Complete Phred-Phrap 2765 2727 1 2 61.7 Sanger China provided by North Pharmaceutical Group Corporation provided by North Pharmaceutical Group Corporation Facultative Rod-shaped Mesophile 7.5 - 8.0 0.8 - 1.0 um gram- Free living Soil 27 - 29 Motile Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum E3 Alaska E43 Alaska E43 Clostridium botulinum E3 str. Alaska E43 Gc00797 Gi03046 Genome Complete and Published Public Los Alamos National Laboratory, DOE Joint Genome Institute Brettin T brettin@lanl.gov CLH 2008-05-16 Unpublished Human Pathogen, Medical 508767 28855 003788_GCAT 289673 642555125 NC_010723 Complete 3659 3369 1 1 27.4 USA Salmon eggs associated with a foodborne case of botulism in Alaska Alaska Alaska Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains, Pairs, Singles Botulism Food, Host 37 Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum B Eklund 17B Eklund 17B Clostridium botulinum B str. Eklund 17B Gc00799 Gi03047 Genome Complete and Published Public Los Alamos National Laboratory, DOE Joint Genome Institute Brettin T brettin@lanl.gov CLL 2008-05-07 Unpublished Medical 508765 28857 003789_GCAT 281543 641522618 NC_010674 Complete 3800 3664 1 1 27.5 USA "Marine sediments taken off the coast of Washington, USA" USA Washington, USA Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains, Pairs, Singles None Marine, Food 37 Motile Non-Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli C ATCC 8739 ATCC 8739 Escherichia coli ATCC 8739 ATCC 8739 No Gc00737 Genome Complete and Published Public DOE Joint Genome Institute DOE Ingram L ingram@ufl.edu EcolC 2008-03-11 Unpublished 481805 18083 003790_GCAT 641522623 NC_010468 Complete 4746 4416 1 0 50 USA Laboratory strain Homo sapiens Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 TW14588 TW14588 Escherichia coli O157:H7 str. TW14588 Gi03048 Genome incomplete Public J. Craig Venter Institute, National Food Safety and Toxicology Center Sutton G gsutton@jcvi.org Human Pathogen, Medical 502346 28847 003791_GCAT 331756 642979322 NZ_ABKY00000000 Draft 5.34x Sanger, 13.28x 454 5785 0 50 454, Sanger USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Hemorrhagic colitis Host Motile Pathogen Bacteria Verrucomicrobia Methylacidiphilum Methylacidiphilum infernorum BACTERIAL Methylacidiphilum infernorum V4 V4 Methylacidiphilum infernorum V4 Gc00812 Gi03053 Genome Complete and Published Public Univ of Hawaii Univ of Hawaii, DoD Alam M alam@hawaii.edu Minf 2008-05-30 Biol. Direct 3, 26 481448 28995 003803_GCAT 295454 642555138 NC_010794 Complete 3 Kb Arachne, Seqman II Glimmer 2287 2521 1 0 45 USA Hell's Gate geothermal area in New Zealand New Zealand Hell's Gate geothermal area in New Zealand Aerobe Thermophile gram- Free living None Hot spring Acidophile Methanotroph Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mutans BACTERIAL Streptococcus mutans NN2025 NN2025 C Streptococcus mutans NN2025 Gc01074 Gi03049 Genome Complete and Published Public Tokyo Univ Nakagawa I ichiro-n.bac@tmd.ac.jp 2009-08-05 BMC Genomics 10, 358 Human Pathogen, Medical 511691 28997 003792_GCAT 0 Complete Level 6: Finished 1-2Kb, 4-5Kb pUC18 Phred/Phrap/Consed 12.6x Metagenome gambler light, Glimmer 2013 1895 1 0 36.8 Japan clinical serotype c strain isolated in Japan in 2002 from a patient with dental caries 2002 Japan clinical serotype c strain isolated in Japan in 2002 Homo sapiens Patient with dental caries Oral Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Dental caries, Endocarditis Host Nonmotile Pathogen unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil microbial communities from Central New Jersey from Central New Jersey New Jersey Soil Metagenome Gm00129 Metagenome incomplete Public Raritan Valley Community College Environmental 410658 20735 003793_GCAT 0 EU491505-EU491510 0 0 0 USA Campus of Raritan Valley Community College, Somerville, New Jersey USA Raritan Valley Community College, Somerville, New Jersey 40.568168 -74.61173 Mesophile Soil unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Gut microbiome of Chicken of Chicken Chicken Gut Metagenome Gm00130 Metagenome complete Public Univ of Illinois at Urbana-Champaign Dinsdale E elizabeth_dinsdale@hotmail.com 2008-03-12 Nature 452, 629-32 506600 28959 003794_GCAT 0 Complete 0 0 0 454 USA microbial community of the chicken cecum in response to Campylobacter jejuni challenge microbial community of the chicken cecum in response to Campylobacter jejuni challenge unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Gut microbiome of Bovine of Bovine Bovine Gut Metagenome Gm00131 Metagenome complete Public Univ of Illinois at Urbana-Champaign Dinsdale E Elizabeth_dinsdale@hotmail.com 2008-03-12 Nature 452, 629-32 Bioenergy, Biotechnological 506599 28963 003795_GCAT 0 Complete 0 0 0 USA Bovine gut Gastrointestinal tract Rumen Gut, Bovine rumen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae BS457 BS457 Streptococcus pneumoniae BS457 Gi03050 Genome incomplete Public West Penn Allegheny Health System Human Pathogen, Medical 512768 29067 003796_GCAT 0 0 0 0 USA nasopharynx of a child who came down with pneumoniae after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh USA Pittsburgh Homo sapiens Child Patient with pneumonia Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Pneumonia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae BS458 BS458 Streptococcus pneumoniae BS458 Gi03051 Genome incomplete Public West Penn Allegheny Health System Human Pathogen, Medical 512769 29069 003797_GCAT 0 0 0 0 USA nasopharynx of a child who came down with pneumoniae after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh Pittsburgh Homo sapiens Child Patient with pneumonia Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Pneumonia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae BS397 BS397 Streptococcus pneumoniae BS397 Gi03052 Genome incomplete Public West Penn Allegheny Health System Human Pathogen, Medical 512767 29075 003798_GCAT 0 0 0 0 USA nasopharynx of a child who participated in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh Pittsburgh Homo sapiens Child Patient with pneumonia Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Pneumonia Host Nonmotile Pathogen unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial communities from a Coastal Norwegian Fjord from a Coastal Norwegian Fjord under conditions of ocean acidification Marine Metagenome from Coastal Waters Gm00132 Metagenome complete Public Plymouth Marine Laboratory Gilbert JA jagi@pml.ac.uk 2008-08-22 PLoS ONE 3, e3042 Environmental 408172 28969 003799_GCAT 0 GSE10119 Complete 323161 0 0 454-FLX United Kingdom Coastal Norwegian Fjord, Bergen, Norway 2006 Norway Coastal Norwegian Fjord, Bergen, Norway 60.27 5.22 Marine fish metagenome MICROBIAL Fish microbiome from Kent SeaTech from Kent SeaTech Fish Metagenome Gm00133 Metagenome complete Public SDSU Dinsdale EA elizabeth_dinsdale@hotmail.com 2008-03-12 Nature Epub 496924 28955 003800_GCAT 0 Complete 0 0 0 454 USA Microbial and viral communities were collected from hybrid striped bass (gut contents or slime layer) at Kent SeaTech 2006 USA Salton Sea, CA Morone saxatilis 34816 Host unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Saltern microbial communities Saltern Metagenome overview Gm00134 Metagenome complete Public SDSU Dinsdale EA elizabeth_dinsdale@hotmail.com 2008-03-12 Nature 452, 629-32 496920 28725 003801_GCAT 0 Complete 0 0 0 USA Viral and microbial metagenomes from salterns of differing salinities USA Viral and microbial metagenomes from salterns of differing salinities unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Freshwater microbial communities from fish ponds at Kent SeaTech from fish ponds at Kent SeaTech Freshwater Metagenome Gm00135 Metagenome complete Public SDSU Dinsdale EA elizabeth_dinsdale@hotmail.com 2008-03-12 Nature 452, 629-32 449393 28909 003802_GCAT 0 Complete 0 0 0 USA Viral and microbial freshwater metagenomes collected from different fish ponds at Kent SeaTech (Salton, CA) 2005-2006 USA Kent SeaTech (Salton, CA) 33.474751 -115.88696 Fresh water Bacteria Elusimicrobia uncultured Termite group 1 bacterium BACTERIAL Candidatus Endomicrobium sp. Rs-D17 Rs-D17 uncultured Termite group 1 bacterium phylotype Rs-D17 Gc00763 Metagenome Complete and Published Public Univ of Tokyo, RIKEN Hongoh Y yhongo@postman.riken.go.jp 2008-04-08 PNAS 105, 5555-60 471821 20871 003835_GCAT 270406 0 NS_000191 Complete 42x 1125 761 1 3 35.2 Japan Uncultured, from the wood-feeding termite Reticulitermes speratus in Saitama, Japan Japan Saitama, Japan 35.8617292 139.6454822 Gut Mesophile gram- Symbiotic Reticulitermes speratus None Host, Gut Symbiotic, Cellulose degrader Eukaryota Ichthyosporea Capsaspora Capsaspora owczarzaki EUKARYAL Capsaspora owczarzaki ATCC 30864 ATCC 30864 ATCC 30864 Gi03054 Genome incomplete Public Broad Institute NIH-NHGRI Origins of Multicellularity Project (OMP) 595528 20341 003804_GCAT 0 In progress 0 0 0 USA Bacteria Firmicutes Bacilli Bacillales Bacillaceae Geobacillus BACTERIAL Geobacillus thermoglucosidasius M10EXG M10EXG Gi03085 Genome incomplete Public Univ of Illinois at Urbana-Champaign, Agencourt Bioscience Sandia Lab Sapra R rsapra@sandia.gov Biofuels 1426 003836_GCAT 183369 0 Draft Fosmids Hybrid assembly of Sanger and 454-FLX data on Arachne 292 3600 0 1 0 0 454-FLX, Sanger USA Facultative Rod-shaped Sporulating Thermophile gram+ Free living None Cellulosic substrates 65 Acetate producer, Sugars fermentor Motile Ethanol production, Acetic-acid Facultative autotroph Eukaryota Ascomycota Leotiomycetes Erysiphaceae Blumeria Blumeria graminis EUKARYAL Blumeria graminis f. sp. hordei DH14 DH14 grass mildew Blumeria graminis f. sp. hordei DH14 Gi03055 Genome incomplete Public Blumeria Sequencing Consortium, Agencourt Bioscience Agricultural 62688 28821 003805_GCAT 0 5x 45000 0 0 International Conidia (asexual spores) of Blumeria graminis f. sp. hordei DH14 that were collected from infected barley; the conidia were not older than 24 hours Conidia (asexual spores) of Blumeria graminis f. sp. hordei DH14 that were collected from infected barley; the conidia were not older than 24 hours Powdery mildew Pathogen Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Penicillium Penicillium chrysogenum EUKARYAL Penicillium chrysogenum Wisconsin 54-1255 Wisconsin 54-1255 Penicillium chrysogenum Wisconsin 54-1255 Gi03056 Genome incomplete Public DSM Antibiotic production, Medical, Pharmaceutical 500485 27927 003806_GCAT 0 10x 34100 0 0 Netherlands None Penicillin producer Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae M22 M22 Saccharomyces cerevisiae M22 Gi03057 Genome incomplete Public Washington Univ 538975 28815 003807_GCAT 0 ABPC00000000 Draft 2.6x 0 0 0 USA Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae YPS163 YPS163 Saccharomyces cerevisiae YPS163 Gi03058 Genome incomplete Public Washington Univ 538976 28813 003808_GCAT 0 ABPD00000000 Draft 2.8x 0 0 0 USA Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Butyrivibrio Clostridium proteoclasticum BACTERIAL Butyrivibrio proteoclasticum B316 B316 Butyrivibrio proteoclasticus B316 Gi03059 Genome incomplete Public AgResearch 515622 29153 003809_GCAT 0 0 0 0 New Zealand rumen contents of a cow rumen contents of a cow Cow Rumen Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Cow rumen, Rumen, Host Motile Proteolytic Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp. ND132 BACTERIAL Desulfovibrio desulfuricans ND132 ND132 Gi03061 Genome incomplete Public DOE Joint Genome Institute DOE Palumbo AV palumboav@ornl.gov 641491 37769 003811_GCAT 319348 0 In progress 0 0 0 USA Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Motile Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio BACTERIAL Desulfovibrio africanus ATCC 19997 ATCC 19997 ATCC 19997 Gi03062 Genome incomplete Public DOE Joint Genome Institute DOE Palumbo AV palumboav@ornl.gov 873 003812_GCAT 10478 0 Draft 0 0 0 USA marine mud after eruption of submarine hydrogen sulfide Anaerobe Rod-shaped Mesophile gram- Free living Singles Motile Eukaryota Priapulida Priapulidae Priapulus EUKARYAL Priapulus caudatus Priapulid Worm Gi03063 Genome incomplete Public Washington Univ NIH-NHGRI 37621 003813_GCAT 0 BAC 6x 0 0 0 USA Eukaryota Arthropoda Insecta Diptera Psychodidae Lutzomyia Lutzomyia longipalpis EUKARYAL Lutzomyia longipalpis Sand Fly Gi03064 Genome incomplete Public BCM-HGSC NIH-NHGRI Highlander, SK sarahh@bcm.tmc.edu Medical 7200 003814_GCAT 0 BAC 0 0 0 USA Eukaryota Arthropoda Insecta Diptera Psychodidae Phlebotomus EUKARYAL Phlebotomus papatasi Sand Fly Phlebotomus papatasi Gi03065 Genome incomplete Public Washington Univ NIH-NHGRI Medical 29031 20293 003815_GCAT 0 0 0 0 USA Eukaryota Nematoda Chromadorea Rhabditida Dictyocaulidae Dictyocaulus EUKARYAL Dictyocaulus viviparus bovine lungworm Dictyocaulus viviparus Gi03066 Genome incomplete Public Washington Univ NIH-NHGRI Cattle Pathogen 29172 20439 003816_GCAT 0 0 0 0 USA Parasitic Eukaryota Nematoda Chromadorea Rhabditida Molineidae Nematodirus Nematodirus battus EUKARYAL Nematodirus battus Nematodirus battus Gi03068 Genome incomplete Public Washington Univ NIH-NHGRI Animal Pathogen, Medical 28839 20455 003818_GCAT 0 0 0 0 USA Parasitic Eukaryota Nematoda Chromadorea Rhabditida Haemonchidae Teladorsagia EUKARYAL Teladorsagia circumcincta Gi03067 Genome incomplete Public Washington Univ NIH-NHGRI 45464 003817_GCAT 0 0 0 0 USA Eukaryota Nematoda Chromadorea Rhabditida Trichostrongylidae Trichostrongylus Trichostrongylus vitrinus EUKARYAL Trichostrongylus vitrinus Gi03069 Genome incomplete Public Washington Univ NIH-NHGRI 40352 003819_GCAT 0 0 0 0 USA Eukaryota Chordata Actinopterygii Perciformes Cichlidae Haplochromis EUKARYAL Astatotilapia burtoni Gi03070 Genome-Survey incomplete Public Broad Institute NIH-NHGRI 8153 003820_GCAT 0 0 0 0 USA Eukaryota Chordata Actinopterygii Perciformes Cichlidae Maylandia EUKARYAL Maylandia zebra zebra mbuna Gi03071 Genome-Survey incomplete Public Broad Institute NIH-NHGRI 106582 003821_GCAT 0 0 0 0 USA Eukaryota Chordata Actinopterygii Perciformes Cichlidae Paralabidochromis Paralabidochromis chilotes EUKARYAL Paralabidochromis chilotes Gi03073 Genome-Regions incomplete Public Broad Institute NIH-NHGRI 77306 003823_GCAT 0 0 0 0 USA Eukaryota Chordata Coelacanthiformes Coelacanthidae Latimeria EUKARYAL Latimeria chalumnae Gi03074 Genome incomplete Public Broad Institute NIH-NHGRI 7897 003824_GCAT 0 0 0 0 USA Eukaryota Chordata Myxiniformes Myxinidae Eptatretus EUKARYAL Eptatretus burgeri inshore hagfish Gi03075 Genome targeted Public NIH-NHGRI 7764 003825_GCAT 0 0 0 0 USA Eukaryota Chordata Testudines Emydidae Chrysemys Chrysemys picta EUKARYAL Chrysemys picta Painted Turtle Gi03076 Genome targeted Public Washington Univ NIH-NHGRI 8479 003826_GCAT 0 0 0 0 USA Eukaryota Chordata Actinopterygii Semionotiformes Lepisosteidae Lepisosteus EUKARYAL Lepisosteus oculatus spotted gar Gi03077 Genome targeted Public NIH-NHGRI 7918 003827_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Rodentia Cricetidae Peromyscus EUKARYAL Peromyscus californicus California mouse Gi03078 Genome targeted Public NIH-NHGRI 42520 003828_GCAT 0 2x 0 0 0 USA Eukaryota Chordata Mammalia Camelidae Lama EUKARYAL Lama pacos alpaca Lama pacos Gi03080 Genome incomplete Public Washington Univ NIH-NHGRI Warren W 30538 30567 003830_GCAT 0 2x 0 0 0 USA Eukaryota Chordata Mammalia Macroscelidea Macroscelididae EUKARYAL Elephantulus sp. Elephant Shrew Gi03081 Genome incomplete Public Broad Institute NIH-NHGRI 28736 003831_GCAT 0 2x 0 0 0 USA Eukaryota Chordata Mammalia EUKARYAL Dermoptera sp. flying lemurs Gi03082 Genome incomplete Public Washington Univ NIH-NHGRI 30656 003832_GCAT 0 2x 0 0 0 USA Eukaryota Chordata Mammalia Primates Cercopithecidae Macaca EUKARYAL Macaca fascicularis crab-eating macaque Gi03083 Genome incomplete Public Washington Univ NIH-NHGRI 9541 003833_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Rodentia Bathyergidae EUKARYAL Cryptomys sp. Mole Gi03084 Genome targeted Public Broad Institute NIH-NHGRI 10173 003834_GCAT 0 2x 0 0 0 USA Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum parvum BACTERIAL Chlorobaculum parvum NCIB 8327 NCIB 8327 Chlorobaculum parvum NCIB 8327 NCIB 8327 Gc00827 Gi03087 Genome Complete and Published Public DOE Joint Genome Institute DOE Bryant D dab14@psu.edu Cpar 2008-06-27 Unpublished 517417 29213 003839_GCAT 344812 642555120 NC_011027 Complete 2289 2133 1 0 55.8 USA Facultative Rod-shaped Mesophile gram- Free living Singles None Fresh water Photolithotroph Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Leptotrichia Leptotrichia buccalis BACTERIAL Leptotrichia buccalis ATCC14201 ATCC14201 DSM 1135, NCTC 10249, JCM 12969, ATCC14201 Yes Gi03775 Genome-Survey incomplete Public The Forsyth Institute NIH-NIDCR Medical, Human Pathogen, Dental Pathogen, Human Oral Microbiome Project (HOMP) 523794 004569_GCAT 0 Draft 345 0 0 30.5 Supragingival calculus; USA USA Homo sapiens Oral Dental plaque Anaerobe Rod-shaped Mesophile 0.8-1.5 um 5-15 um gram- Free living Filaments, Chains Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma BACTERIAL Mycoplasma fermentans PG18 PG18 ATCC 19989 Yes Gi03126 Genome incomplete Public Hebrew Univ, Goettingen Genomics Laboratory Shlomo R shlomoro@ekmd.huji.ac.il Medical, Human Pathogen 2115 003878_GCAT 307631 0 Draft 1040 867 1 0 26.96 454 Germany ulcerative balanitis Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Respiratory infection, Urogenital infection Host Nonmotile Pathogen unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Freshwater microbial communities from Lake Kinneret from Lake Kinneret High Molecular Weight Fosmids from Lake Kinneret Gm00136 Metagenome incomplete Public Macrogen, Israel Institute of technology Israel Institute of technology Beja O beja@tx.technion.ac.il 003859_GCAT 0 0 0 0 Sanger Israel Lake Kinneret, Israel Israel Lake Kinneret, Israel 32.7872 35.6176 Fresh water Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa PAb1 PAb1 Pseudomonas aeruginosa PAb1 Gi03127 Genome incomplete Public Univ of Maryland Human Pathogen, Medical 509633 28809 003879_GCAT 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Opportunistic infection Host Motile Heterotroph Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycodaceae Saccharomycodes Saccharomycodes ludwigii EUKARYAL Saccharomycodes ludwigii NBRC 1722 NBRC 1722 Saccharomycodes ludwigii NBRC 1722 NBRC 1722 Gi03141 Genome incomplete Public EMBL Food industry, Agricultural 36035 28063 003893_GCAT 0 0 0 7 0 0 European Consortium None Host Eukaryota Streptophyta Rosales Rosaceae Malus EUKARYAL Malus domestica cv Golden Delicious apple Malus x domestica golden delicious Gi03143 Genome incomplete Public Myriad genetics, IASMA Research Center, 454 Life Sciences 3750 28845 003895_GCAT 0 4x Sanger, 10x 454 0 0 0 454, Sanger USA Eukaryota Streptophyta Liliopsida Arecales Arecaceae Elaeis EUKARYAL Elaeis guineensis var. tenura var. tenura African oil palm Gi03148 Genome complete Proprietary Synthetic Genomics Inc., ACGT 51953 003901_GCAT 0 Complete 1800000 0 0 International Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis BACTERIAL Bacillus thuringiensis sv andalousiensis BGSC 4AW1 sv andalousiensis BGSC 4AW1 andalousiensis Bacillus thuringiensis serovar andalousiensis BGSC 4AW1 Gi03179 Genome incomplete Public Naval Medical Research Center Read TD Insect Pathogen, Biotechnological, Agricultural 527032 29725 003938_GCAT 643886086 NZ_ACNG00000000 Draft 18.0x 257 5463 5638 35 454 USA Spain Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains Sotto disease Soil, Plant surface Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus pseudomycoides BACTERIAL Bacillus pseudomycoides DSM 12442 DSM 12442 Bacillus pseudomycoides DSM 12442 DSM 12442, NRRL B617 Yes Gi03188 Genome incomplete Public Naval Medical Research Center Read TD Medical 527000 29707 003947_GCAT 238006 643886172 NZ_ACMX00000000 Draft 8.5x 305 5762 5941 35 454 USA Soil Soil Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains None Soil Nonmotile Bacteria Proteobacteria Gammaproteobacteria Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus thiooxidans BACTERIAL Acidithiobacillus thiooxidans ATCC 19377 ATCC 19377 ATCC 19377, DSM 14887 Yes Gi04235 Genome incomplete Public CBGB Valdes J Jorge.valdes@gmail.com http://www.cienciavida.cl/cbgb.htm/Bioinformatics%20Center/People_files/Jorge.htm Biotechnological, Bioleaching 637390 36587 005070_GCAT 0 0 0 0 Chile gram- Bacteria Proteobacteria Gammaproteobacteria Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus caldus BACTERIAL Acidithiobacillus caldus ATCC 51756 ATCC 51756 ATCC 51756, DSM 8584 Yes Gi04236 Genome incomplete Public CBGB Valdes J Jorge.valdes@gmail.com http://www.cienciavida.cl/cbgb.htm/Bioinformatics%20Center/People_files/Jorge.htm Biotechnological 637389 36585 005071_GCAT 0 NZ_ACVD00000000 Draft 139 2946 2878 61 Chile Coal spoils, United Kingdom United Kingdom gram- Bacteria Proteobacteria Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas BACTERIAL Brevundimonas diminuta ATCC 11568 ATCC 11568 ATCC 11568 Yes Gi03460 Genome incomplete Public Indiana Univ NSF Brun Y ybrun@indiana.edu 293 004243_GCAT 273933 0 3000 0 67 454-FLX USA Fresh water stream Fresh water stream Anaerobe Rod-shaped Mesophile gram- Free living None Fresh water, Fresh water Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Lutiella Lutiella nitroferrum BACTERIAL Lutiella nitroferrum 2002, ATCC BAA-1479 2002, ATCC BAA-1479 Lutiella nitroferrum 2002 ATCC BAA-1479 Gi03340 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Bioremediation 279714 30761 004109_GCAT 140478 643886068 NZ_ACIS00000000 Draft 20 4228 4011 64 USA Mesophile gram- Free living None Fresh water Iron oxidizer, Uranium oxidizer unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Freshwater microbial communitites from cave in Bad Gastein Austria from cave in Bad Gastein Austria JOSEF-environmental water samples from Austria Gm00168 Metagenome incomplete Public Schleper C Christa.schleper@univie.ac.at Environmental 005132_GCAT 0 In progress Phred/Phrap/Consed 0 0 0 BAC clones Germany Bad Gastein water 2006 Austria cave, Bad Gastein, Austria 47.11 13.12 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Pectobacterium Pectobacterium carotovorum BACTERIAL Pectobacterium carotovorum carotovorum WPP14 WPP14 Pectobacterium carotovorum subsp. carotovorum WPP14 Gi03344 Genome incomplete Public Univ of Wisconsin Charkowski A amyc@plantpath.wisc.edu Plant Pathogen, Agricultural 558270 31123 004113_GCAT 643886054 NZ_ABVY00000000 Draft 4823 0 52 USA cases of tuber soft rot or aerial stem rot in potatoes from Wisconsin diseased potato USA cases of tuber soft rot or aerial stem rot in potatoes from Wisconsin diseased potato Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Soft rot Host Motile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Rhodobacter Rhodobacter sphaeroides BACTERIAL Rhodobacter sphaeroides KD131 KD131 Rhodobacter sphaeroides KD131 KCTC12085 Gc00889 Gi03345 Genome Complete and Published Public GenoTech corp. Lim S-K slim@genotech.co.kr 2008-11-21 J Bacteriology 191, 1118-9 Biohydrogen, Bioenergy, Biotechnological, Energy production, Comparative analysis 557760 31111 004114_GCAT 643348570 NC_011963, NC_011958 Complete 2Kb, 35Kb 38063 Phred/Phrap/Consed Glimmer3 4450 4325 2 2 68.7 Sanger Korea Sea mud off the coast of DaeBu Island, South Korea South Korea 37.253833 126.560783 Facultative Rod-shaped Mesophile Halophile gram- Free living Chains 25 - 35 Motile Hydrogen production Photosynthetic Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium tuberculostearicum BACTERIAL Corynebacterium tuberculostearicum SK141 SK141 Corynebacterium tuberculostearicum SK141 BEI HM-110 Unknown Gi03351 Genome incomplete Public J. Craig Venter Institute JCVI hmpstrainsjcvi@jcvi.org Human Microbiome Project (HMP), Medical 553206 31009 SRS001047 004120_GCAT 311 0 ACVP00000000, NZ_ACVP00000000 Draft 264158 Newbler 1.1.03.24-64-7 25X 37 2372 2266 60 USA Blaser Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles None Host, Skin microflora Nonmotile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis BACTERIAL Gardnerella vaginalis ATCC 14019 ATCC 14019 Gardnerella vaginalis ATCC 14019 ATCC 14019 Unknown Gi03392 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Human Microbiome Project (HMP), Medical 525284 31473 SRS001927 004162_GCAT 421 12607 643886060 ACGF00000000 Draft Newbler/1.1.03.19 70.96X 175 1679 1481 41 Illumina, 454-FLX USA Human vaginal sample ATCC Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Mesophile gram+ Free living Bacterial vaginosis Vagina microflora, Host Bacteria Firmicutes Clostridia Clostridiales Clostridiales bacterium 1_7_47FAA BACTERIAL Clostridiales sp. 1_7_47FAA 1_7_47FAA Clostridiales bacterium 1_7_47FAA BEI HM-35 Unknown Gi03360 Genome incomplete Public Broad Institute Broad hmpstrainsbroad@broad.mit.edu Human Microbiome Project (HMP), Medical 457421 30067 004129_GCAT 212 643886007 NZ_ABQR00000000, ABQR00000000 Complete 29x 172 6514 6241 50 USA Human feces Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Mesophile gram+ Free living Host Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Laribacter Laribacter hongkongensis BACTERIAL Laribacter hongkongensis HLHK9 HLHK9 Laribacter hongkongensis HLHK9 Gc00966 Gi03363 Genome Complete and Published Public Univ of Hong Kong, Genome Research Centre, HKU Yuen, K-Y kyyuen@hkucc.hku.hk 2009-04-14 PLoS Genetics 5, e1000416 Human Pathogen, Medical 557598 30817 004132_GCAT 643692026 NC_012559 Complete 24Kb, 5-6Kb, 3545Kb pcDNA2.1, pCC2FOS Phrap Glimmer 3.02 3169 3333 1 0 62.3 Sanger China blood and thoracic empyema of an alcoholic liver cirrhosis patient in Hong Kong China case of gastroenteritis in Hong Kong 22.396428 114.109497 Homo sapiens Patient with gastroenteritis Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Opportunistic infection, Gastroenteritis Host, Fish Motile Pathogen Eukaryota Chordata Actinopterygii Perciformes Cichlidae Rhamphochromis EUKARYAL Rhamphochromis esox Rhamphochromis esox Otter Point Gi03367 Genome incomplete Public DOE Joint Genome Institute DOE 163638 29485 004136_GCAT 0 Draft 0 0 0 USA Eukaryota Chordata Actinopterygii Perciformes Cichlidae Melanochromis EUKARYAL Melanochromis auratus Gi03369 Genome incomplete Public DOE Joint Genome Institute DOE 27751 004138_GCAT 0 Draft 0 0 0 USA Eukaryota Arthropoda Insecta Diptera Calliphoridae Cochliomyia EUKARYAL Cochliomyia hominivorax Panama 95 Panama 95 primary screw-worm Cochliomyia hominivorax Panama 95 Gi03375 Genome incomplete Public Univ of Oklahoma USDA 115425 30971 004144_GCAT 0 0 0 0 USA Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis BACTERIAL Lactococcus lactis lactis KF147 KF147 Gi03379 Genome incomplete Public Kluyver Center, NIZO Food Research, Radboud Univ Siezen R r.siezen@cmbi.ru.nl http://www.ncmls.ru.nl/cmbi Agricultural, Food industry 1360 004149_GCAT 364309 0 Draft 2600 0 35 Netherlands mung bean sprouts mung bean sprouts Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living None Plants, Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus fermentum BACTERIAL Lactobacillus fermentum 28-3-CHN 28-3-CHN Unknown Gi03441 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Human Microbiome Project (HMP), Medical 575599 38517 004211_GCAT 513 260994 0 In progress 0 0 0 USA Human vaginal normal flora Qiang Xu, Osel Inc. Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Human vaginal microflora, Host Nonmotile Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Haloquadratum ARCHAEAL Haloquadratum walsbyi C23T, DSM 16854 C23T, DSM 16854 DSM 16854, JCM 12705 Yes Gi03443 Genome incomplete Public Max-Planck Institute Max Planck Society Pfeiffer F fpf@biochem.mpg.de Biotechnological 293091 004213_GCAT 100448 0 3100 0 47 Germany "Saltern crystallizer pond, Australia in March 2002" March 2002 Australia Saltern crystallizer pond, Australia in March 2002 Aerobe Square-shaped Mesophile Halophile gram- Free living None Solar saltern, Fresh water Nonmotile Phototroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium leprae BACTERIAL Mycobacterium leprae Br4923 Br4923 Mycobacterium leprae Br4923 Gc00941 Gi03445 Genome Complete and Published Public Institut Pasteur Cole ST MLBr 2009-01-10 Unpublished Human Pathogen, Medical 561304 31271 004215_GCAT 643348566 NC_011896 Complete 3268 2767 1 0 57 France human skin biopsy in Brazil Brazil human skin biopsy in Brazil Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Leprosy Host 37 Nonmotile Pathogen Chemoorganotroph Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae ARCHAEAL Metallosphaera sp. MK1 MK1 Gi03500 Genome incomplete Public SymBio Inskeep WP binskeep@montana.edu Biotechnological 41980 004286_GCAT 0 Draft Phrap 1085 4000 0 47.5 Sanger USA Acidic Geothermal Springs in Yellowstone National Park USA Yellowstone National Park "44,376,262" "-110,690,383" Facultative Coccus-shaped Thermophile 2 - 3 gram- Free living None Fresh water, Hot spring 65 Acidophile Chemolithoautotroph Archaea Crenarchaeota Thermoprotei Desulfurococcales Desulfurococcaceae Acidilobus ARCHAEAL Acidilobus sulfurireducens Gi03501 Genome incomplete Proprietary SymBio Inskeep WP binskeep@montana.edu Biotechnological 411357 004287_GCAT 179370 0 Draft Phrap 0 0 56.2 Sanger USA Yellowstone National Park USA Yellowstone National Park "44,376,262" "-110,690,383" Anaerobe Thermophile 3 gram- Free living None Hot spring, Fresh water 81 Acidophile Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus sp. m3-13 BACTERIAL Bacillus sp. m3-13 m3-13 Bacillus sp. m3-13 Gi03604 Genome incomplete Public Cinvestav del IPN 406124 38237 004396_GCAT 0 0 0 0 Mexico water column in Cuatro Cienegas Mexico Mexico 26.826167 -102.254792 gram+ Eukaryota Streptophyta Amborellales Amborellaceae Amborella EUKARYAL Amborella trichopoda Gi03464 Genome-Regions incomplete Public Indiana Univ Palmer J 20x 0 0 0 454-FLX USA Poulty nasal cavity Archaea Crenarchaeota Candidatus Nitrososphaera ARCHAEAL Candidatus Nitrososphaera gargensis Ga9-2 Ga9-2 Gi04455 Metagenome incomplete Public Univ Hamburg, Univ of Vienna Spieck E eva.spieck@uni-hamburg.de 497727 005313_GCAT 0 Draft 0 0 0 Germany Garga hot spring in the Baikal rift zone 2001 Russia 54.428539 110.613136 Aerobe Eukaryota Streptophyta Caryophyllales Amaranthaceae Amaranthus EUKARYAL Amaranthus tuberculatus ACR Gi04459 Genome incomplete Public Univ of Illinois at Urbana-Champaign 277990 38543 005317_GCAT 0 ACQK00000000 Draft 0 0 0 454 USA Leaf from Amaranthus tuberculatus Eukaryota Chordata Actinopterygii Cyprinodontiformes Nothobranchiidae Nothobranchius EUKARYAL Nothobranchius furzeri GRZ GRZ Gi04460 Genome incomplete Public Leibniz Institute 105023 29535 005318_GCAT 0 ABLO00000000 Draft 0 0 0 Germany Eukaryota Streptophyta Liliopsida Poales Poaceae Oryza EUKARYAL Oryza barthii IRRI Acc:105608 IRRI Acc:105608 Gi04463 Genome incomplete Public Arizona Genomics Institute 65489 30379 005321_GCAT 0 ABRL00000000 Draft 0 0 0 USA Eukaryota Streptophyta Bryopsida Hypnales Anomodontaceae Anomodon EUKARYAL Anomodon rugelii Q06002 Q06002 Gi04466 Genome incomplete Public Univ of Michigan 84230 31321 005324_GCAT 0 0 0 0 USA Parker Mill Park, Ann Arbor, MI USA 42.272511 -83.66696 Eukaryota Streptophyta Brassicales Brassicaceae Arabidopsis EUKARYAL Arabidopsis arenosa Care-1 Care-1 Gi04467 Genome incomplete Public Cold Spring Harbor Laboratory NSF Martienssen R martiens@cshl.edu 38785 37965 005325_GCAT 0 Draft 26x 0 0 0 USA Eukaryota Streptophyta Cucurbitales Cucurbitaceae Cucumis EUKARYAL Cucumis sativus 9930 9930 cucumber Gi04468 Genome incomplete Public Beijing Genomics Institute Agricultural 3659 33619 005326_GCAT 0 0 0 0 China Eukaryota Ascomycota Sordariomycetes Magnaporthales Magnaporthaceae Gaeumannomyces Gaeumannomyces graminis EUKARYAL Gaeumannomyces graminis tritici R3-111a-1 R3-111a-1 Gaeumannomyces graminis var. tritici R3-111a-1 Gi04469 Genome incomplete Public Broad Institute 644352 37931 005327_GCAT 0 In progress 0 0 0 USA Eukaryota Ascomycota Sordariomycetes Phyllachorales Phyllachoraceae Glomerella Glomerella graminicola EUKARYAL Glomerella graminicola M1.001 M1.001 Gi04470 Genome incomplete Public Broad Institute Fungal Genome Initiative (FGI) 645133 37879 005328_GCAT 0 9x 0 0 0 USA Eukaryota Chordata Coelacanthiformes Coelacanthidae Latimeria EUKARYAL Latimeria menadoensis Indonesian Indonesian Gi04473 Genome incomplete Public Broad Institute NIH-NHGRI 106881 38001 005331_GCAT 0 In progress 0 0 0 USA Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Zunongwangia Zunongwangia profunda BACTERIAL Zunongwangia profunda SM-A87 SM-A87 Gi04483 Genome incomplete Public Beijing Institute of Genomics 655815 38641 005341_GCAT 0 0 0 0 China Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Cellulomonadaceae Actinotalea BACTERIAL Actinotalea fermentans Gi04485 Genome targeted Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 43671 005343_GCAT 0 Awaiting DNA 0 0 0 USA unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fecal microbiome of Swine of Swine from Yorkshire Ohio Yorkshire Pig Fecal Metagenome GS20 Yorkshire Pig Fecal Metagenome Gm00197 Metagenome incomplete Proprietary 454 Life Sciences US-EPA Lamendella R lamendella.regina@epa.gov Environmental 39267 39267 006179_GCAT 0 In progress Newbler 125000 0 0 454-GS20 USA Pig Feces from Yorkshire Ohio 04/01/06 USA Yorkshire, Ohio 40.325288 -84.495236 Sus scrofa Gastrointestinal tract Feces unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Gut microbiome of Mt. Pinos Trichonympha termites of Mt. Pinos Trichonympha termites Termite Protist Endosymbiont Community Gm00182 Metagenome incomplete Public Susannah Tringe sgtringe@lbl.gov 005370_GCAT 0 Draft Level 1: Standard Draft short-insert and 454-tGS20 pUC18 0 0 0 454-GS20, Dideoxysequencing USA Mt. Pinos, Los Padres National Forest, California, USA USA Mt. Pinos, Los Padres National Forest, California, USA 34.597241 -119.510771 Trichonympha sp. Gastrointestinal tract Mesophile unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil microbial community from switchgrass rhizosphere from switchgrass rhizosphere 4087293_GHBU_454SingletonReads.Q20.m300.fna Gm00185 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov Bioenergy 006166_GCAT 0 In progress 454 Titanium Newbler 0 0 0 454-Titanium USA Michigan State University farm November 3, 2008 USA East Lansing, MI 42.704677 -84.468818 Soil unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fecal microbiome of Human of Human in Crohn Disease Metagenomic Analysis of the Structure and Function of the Human Gut Microbiota in Crohn Metagenomic Analysis of the Structure and Function of the Human Gut Microbiota in Crohn Gm00183 Metagenome incomplete Public Univ of Maryland, IGS Claire M. Fraser-Liggett cmfraser@som.umaryland.edu Medical 006164_GCAT 0 In progress Level 1: Standard Draft 0 0 0 454-Titanium USA Sweden Homo sapiens 9606 Gastrointestinal tract Inflammatory bowel disease Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma genitalium BACTERIAL Mycoplasma genitalium M2288 M2288 Mycoplasma genitalium M2288 No Gi04585 Genome incomplete Public LSU Health Sciences Center NIH Martin DH dhmartin@lsuhsc.edu www.lsuhsc.edu Medical, Human Pathogen 662947 39707 005445_GCAT 0 In progress 0 0 1 0 0 454 USA Copenhagen, Denmark Male Urethra Orig. isolated in Copenhagen, Denmark; sequenced DNA maintained at LSU Health Sciences Center. 1995 Denmark 8789002 Copenhagen, Denmark 55.676111 12.568333 Homo sapiens 9606 Male Urethritis Urogenital tract Urethra Aerobe Flask-shaped Nonsporulating Mesophile Urogenital infection Host, Urogenital tract 37C Motile unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fecal microbiome of Human of Human from Baltimore, MD Human fecal microbiota Baltimore, MD Gm00184 Metagenome complete Public J. Craig Venter Institute Univ of Maryland Mai V vmai@ufl.edu Human Gut Microbiome Initiative (HGMI) 006165_GCAT 0 Complete 10976 pUC18 10976 10580435 0 0 Sanger USA Human stool Male human volunteers 32 years USA Baltimore, MD Human Male 32 years old Caucasian Healthy Without taken antibiotics for at least one year prior to the sampling Gastrointestinal tract Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma genitalium BACTERIAL Mycoplasma genitalium M6320 M6320 Mycoplasma genitalium M6320 No Gi04583 Genome incomplete Public LSU Health Sciences Center NIH Martin DH dhmartin@lsuhsc.edu http://www.lsuhsc.edu Medical, Human Pathogen 662945 39703 005443_GCAT 0 Complete 0 0 1 0 0 454 USA Melbourne, Australia Male Urethra Orig. isolated in Melbourne, Australia; sequenced DNA maintained at LSU Health Sciences Center. 2008 Australia 8789002 Melbourne, Australia -37.813611 144.963056 Homo sapiens 9606 Male Urethritis Urogenital tract Urethra Aerobe Flask-shaped Nonsporulating Mesophile Urogenital infection Urogenital tract, Host 37C Motile Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma genitalium BACTERIAL Mycoplasma genitalium M6282 M6282 Mycoplasma genitalium M6282 No Gi04584 Genome incomplete Public LSU Health Sciences Center NIH Martin DH dhmartin@lsuhsc.edu www.lsuhsc.edu Human Pathogen, Medical 662946 39705 005444_GCAT 0 Complete 0 0 1 0 0 454 USA Japan Male Urethra Orig. isolated in Miyazaki, Japan; sequenced DNA maintained at LSU Health Sciences Center. 2008 Japan 17251394 32.016667 131.35 Homo sapiens 9606 Male Urethritis Urogenital tract Urethra Aerobe Flask-shaped Nonsporulating Mesophile Urogenital infection Urogenital tract, Host 37C Motile Archaea Thaumarchaeota Nitrosopumilales Nitrosopumilaceae Nitrosopumilus uncultured Candidatus Nitrosopumilus sp. ARCHAEAL Candidatus Nitrosopumilus sp. Archaea from Low-Salinity Sediments Gi04648 Genome incomplete Public 517606 39741 005538_GCAT 0 In progress Newbler 6726 5719 42 454 USA San Francisco Bay Estuary August 2005 USA 18973621 38.09943 -122.04692 Aerobe Mesophile Free living Singles None Sediment Chemolithotroph, Autotroph Eukaryota Ascomycota Sordariomycetes Sordariales Sordariaceae Neurospora Neurospora crassa EUKARYAL Neurospora crassa 3564 3564 Gr00039 Resequencing incomplete Public DOE Joint Genome Institute DOE Baker S scott.baker@pnl.gov 5141 005472_GCAT 0 In progress 0 0 54 Illumina USA Filament-shaped None Eukaryota Ascomycota Sordariomycetes Sordariales Sordariaceae Neurospora Neurospora crassa EUKARYAL Neurospora crassa 821 821 Gr00043 Resequencing incomplete Public DOE Joint Genome Institute DOE Baker S scott.baker@pnl.gov 5141 005476_GCAT 0 In progress 0 0 54 Illumina USA Filament-shaped None Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Rhodopila BACTERIAL Rhodopila globiformis 7950, DSM 161 7950, DSM 161 ATCC 35887, DSM 161 Yes Gi04676 Genome incomplete Public Arizona State Univ NSF Touchman J j.touchman@asu.edu 1071 005566_GCAT 0 In progress 0 0 0 USA Acidic sulfur spring adjacent to the Gibbon River, Yellowstone National Park 1970 USA 44.376262 -110.690383 Facultative Sphere-shaped Nonsporulating Mesophile 4.8 1.7 um Red gram- Free living 32 Motile Photosynthetic Eukaryota Labyrinthulida Thraustochytriidae Aplanochytrium Aplanochytrium kerguelense EUKARYAL Aplanochytrium kerguelense slime nets Gi04681 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 87111 005572_GCAT 0 Awaiting DNA 0 0 0 USA Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Dehalobacter Dehalobacter sp. E1 BACTERIAL Dehalobacter sp. E1 E1 Gr00053 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 304767 005579_GCAT 0 Awaiting DNA 0 0 0 USA Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Dekkera EUKARYAL Dekkera bruxellensis CBS 2499 CBS 2499 CBS 2499 Gi04685 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 5007 005585_GCAT 0 Awaiting DNA 0 0 0 USA Eukaryota Labyrinthulida Thraustochytriidae Schizochytrium Schizochytrium limacinum EUKARYAL Schizochytrium limacinum ATCC MYA-1381 ATCC MYA-1381 slime nets ATCC MYA-1381 Gi04686 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 87102 005587_GCAT 0 Awaiting DNA 0 0 0 USA seawater in mangrove area, Colonia, Yap Islands, Micronesia 9.542534 138.11013 Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus viridans Unknown Gi04853 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 78535 005759_GCAT 857 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human skin Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Curvibacter uncultured Curvibacter sp. BACTERIAL Curvibacter sp. uncultured Curvibacter sp. Gi04869 Metagenome incomplete Public Technical Univ Munchen 326294 39967 005777_GCAT 0 0 0 0 Germany Hydra magnipapillata Hydra magnipapillata Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Cronobacter BACTERIAL Cronobacter turicensis Gi04870 Genome incomplete Public Technical Univ Munchen 413502 39965 005778_GCAT 0 0 0 0 Germany Eukaryota Annelida Polychaeta Terebellida Alvinellidae Alvinella Alvinella pompejana EUKARYAL Alvinella pompejana Ge00352 EST incomplete Public Genoscope Wincker P pwincker@genoscope.cns.fr 6376 005780_GCAT 0 pMe18S-f13 0 0 0 France Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Geodermatophilaceae Modestobacter BACTERIAL Modestobacter multiseptatus BC501 BC501 Gi04873 Genome incomplete Public Genoscope Barbe V vbarbe@genoscope.cns.fr 88139 005782_GCAT 0 0 0 0 France Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli FVEC1412 FVEC1412 Gi04883 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 656380 39917 005792_GCAT 0 In progress 0 0 0 USA Bacteria Cyanobacteria Nostocales Nostocaceae Cylindrospermopsis Cylindrospermopsis raciborskii BACTERIAL Cylindrospermopsis raciborskii CS-505 CS-505 Gi04914 Genome incomplete Public Leibniz Institute 533240 40109 005824_GCAT 0 0 0 0 Germany Eukaryota Streptophyta Liliopsida Alismatales Araceae Spirodela EUKARYAL Spirodela polyrhiza Gi04923 Genome incomplete Public DOE Joint Genome Institute DOE Agricultural 29656 005840_GCAT 0 Awaiting DNA 0 0 0 USA Eukaryota Ascomycota Cryomyces Cryomyces antarcticus EUKARYAL Cryomyces antarcticus CBS 116301 CBS 116301 Gi04925 Genome incomplete Public DOE Joint Genome Institute DOE 329879 005848_GCAT 0 0 0 0 Eukaryota Ascomycota Cryomyces Cryomyces antarcticus EUKARYAL Cryomyces antarcticus CBS 116301 CBS 116301 Ge00356 EST incomplete Public DOE Joint Genome Institute DOE 329879 005849_GCAT 0 0 0 0 Eukaryota Arthropoda Insecta Diptera Phoridae Megaselia Megaselia scalaris EUKARYAL Megaselia scalaris Gi04973 Genome-Survey complete Public Duke Center for Genome Technology NSF Noor MAF noor@duke.edu 36166 SRA008342 005900_GCAT 0 Complete 129080 0.05-0.1x 0 0 32 454-FLX USA Durham, NC USA 35.976805 -78.906843 Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Sulfuricurvum BACTERIAL Sulfuricurvum kujiense YK-1, DSM 16994 YK-1, DSM 16994 ATCC BAA-921, DSM 16994 Yes Gi05071 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org GEBA, Tree of Life 148813 005998_GCAT 0 In progress 0 0 45 USA Drain water from an underground crude-oil storage cavity; Japan, Kuji, Iwate Japan 15545474 Kuji, Iwate, Japan 40.190524 141.775583 Anaerobe Rod-shaped Mesophile 7.0 Free living 25 Motile Sulfide oxidizer Chemolithoautotroph Bacteria Cyanobacteria Nostocales Nostocaceae Raphidiopsis Raphidiopsis brookii BACTERIAL Raphidiopsis brookii D9 D9 Gi05078 Genome incomplete Public Leibniz Institute 533247 40111 006005_GCAT 0 0 0 0 Germany Eukaryota Ascomycota Dothideomycetes Capnodiales Baudoinia EUKARYAL Baudoinia compniacensis Gi05087 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 430998 006014_GCAT 0 Awaiting DNA 0 0 0 USA Bacteria Firmicutes Clostridia Clostridiales Heliobacteriaceae Heliophilum BACTERIAL Heliophilum fasciatum Tanzania Tanzania DSM 11170, ATCC 51790 Yes Gi05093 Genome incomplete Public Isolation, Arizona State Univ NSF Touchman J j.touchman@asu.edu 35700 006020_GCAT 0 0 0 0 USA dry rice paddy soil, Tanzania 1992 Tanzania Anaerobe Rod-shaped Sporulating Mesophile 7 0.9 um 7 um Green gram- Free living None Rice paddies, Soil 38 Motile Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio mimicus BACTERIAL Vibrio mimicus VM603 VM603 Gi05127 Genome incomplete Public LNCC, Osaka Univ 671074 40241 006064_GCAT 0 NZ_ACYU00000000 Draft 22x 195 4350 3831 46 454 Japan Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Enterobacter BACTERIAL Enterobacter cloacae NCTC 9394 NCTC 9394 NCTC 9394 Unknown Gi05129 Genome targeted Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 550 006066_GCAT 9234 0 Targeted 0 0 0 United Kingdom Human faeces, Montevideo, Uruguay in 1955 1955 Uruguay Montevideo, Uruguay -34.894119 -56.067451 Homo sapiens Gastrointestinal tract Feces Anaerobe Mesophile Grey gram- Free living Host, Human intestinal microflora 37 Motile unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fecal microbiome of Canis familiaris of Canis familiaris K9gut2 k9gut Gm00188 Metagenome incomplete Public Scot E Dowd sdowd@pathogenresearch.org Animal Pathogen 006169_GCAT 0 Draft none Proxygenes 0 0 0 454-Titanium USA canis familiaris from University of Illinois 2008 USA University of Illinois 40.11 88.2 Canis familiaris Gastrointestinal tract Animal feces, Feces unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL microbial community from a limestone sinkhole mat from a limestone sinkhole mat in El Zacaton, Mexico Metagenome from Zacaton Microbial Mat Gm00194 Metagenome incomplete Public 527640 34525 006175_GCAT 0 In progress 0 0 0 USA microbial community in a limestone sinkhole in Mexico Mexico El Zacaton, Mexico 19.264938 -99.244015 Archaea Euryarchaeota Candidatus Micrarchaeum Candidatus Micrarchaeum acidiphilum ARCHAEAL Candidatus Micrarchaeum acidiphilum ARMAN-2 ARMAN-2 Candidatus Micrarchaeum acidiphilum ARMAN-2 Gi05229 Metagenome incomplete Public Univ of California, Berkeley Banfield JF jbanfield@berkeley.edu 425595 38565 006176_GCAT 0 0 0 0 underground at the Ultraback A location (UBA site) in the Richmond Mine, Iron Mountain, CA USA Richmond Mine, Iron Mountain, CA 40.677339 -122.522194 3,100 ft unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Glacier Ice microbial community from Northern Schneeferner, Germany from Northern Schneeferner, Germany Northern Schneeferner Glacier Ice Metagenomic Project Gm00195 Metagenome incomplete Public Goettingen Genomics Laboratory Daniel R 452919 30701 006177_GCAT 0 In progress 0 0 0 Germany Northern Schneeferner glacier Germany Northern Schneeferner 47.416667 10.983333 Archaea ARCHAEAL Euryarchaeota sp. WTF-1 WTF-1 Gi05230 Metagenome complete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 28890 006181_GCAT 0 In progress 0 0 0 USA Eukaryota Chlorophyta Prasinophyceae Mamiellales Ostreococcus Ostreococcus tauri EUKARYAL Ostreococcus tauri RCC 1558 RCC 1558 Gr00085 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Evolutionary 70448 006210_GCAT 0 Awaiting DNA 0 0 0 USA Coccus-shaped Mesophile None Fresh water Small, Carbon fixation Photosynthetic Bacteria Cyanobacteria Chroococcales Microcystis BACTERIAL Microcystis aeruginosa KLA2 KLA2 Blue-green alga No Gi05270 Genome incomplete Public UCSC Klamath Watershed Institute Pia Moisander piam@pmc.ucsc.edu Animal Pathogen, Human Pathogen, Ecological 1126 006247_GCAT 0 In progress 0 0 0 USA Copco Reservoir, Klamath River, California, USA University of California Santa Cruz July 2007 USA Copco Reservoir, Klamath River, California, USA 41.961571 -122.430983 Surface Bacteria Cyanobacteria Oscillatoriales Pseudanabaena BACTERIAL Pseudoanabaena KLA6 KLA6 Blue-green alga No Gi05271 Genome incomplete Public UCSD Klamath Watershed Institute Moisander P piam@pmc.ucsc.edu Ecological, Biotechnological 1152 006248_GCAT 0 In progress 0 0 0 USA Bacteria Proteobacteria Betaproteobacteria Rhodocyclales Rhodocyclaceae Azospira Azospira oryzae BACTERIAL Dechlorosoma suillum PS PS Gi05325 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Biogeochemical 640081 006301_GCAT 0 In progress 0 0 0 USA Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Piscirickettsiaceae Thioalkalimicrobium BACTERIAL Thioalkalimicrobium cyclicum ALM 1 ALM 1 Gi05326 Genome incomplete Public DOE Joint Genome Institute DOE Broad microbes@cuba.jgi-psf.org Bioremediation, Biotechnological 147268 006302_GCAT 0 Awaiting DNA 0 0 0 USA Bacteria Cyanobacteria Stigonematales Fischerella Fischerella sp. BACTERIAL Fischerella sp. JSC-11 JSC-11 Gi05330 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 1191 006306_GCAT 0 Awaiting DNA 0 0 0 USA Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Acetobacter Acetobacter pasteurianus BACTERIAL Acetobacter pasteurianus IFO 3283-26 IFO 3283-26 Acetobacter pasteurianus IFO 3283-26 Gi05335 Genome incomplete Public Yamaguchi Univ, NITE Azuma Y yazuma@yamaguchi-u.ac.jp Agricultural 634456 31137 006312_GCAT 0 In progress 0 0 0 Japan Aerobe gram- Symbiotic Plants None Nitrogen fixation, Acid-producing Bacteria Acidobacteria Holophagae Holophagales Holophagaceae Geothrix BACTERIAL Geothrix fermentans Gi05340 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 44676 13380 006317_GCAT 0 In progress 0 0 0 USA iron-reducing zone of petroleum-contaminated sediment Anaerobe Rod-shaped Mesophile Free living Singles, Chains None Nonmotile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Rahnella BACTERIAL Rahnella aquatilis Y9602 Y9602 Gi05347 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 34038 006324_GCAT 0 Awaiting DNA 0 0 0 USA Bacteria Thermotogae Thermotogae (class) Thermotogales Thermotogaceae Petrotoga Petrotoga mobilis BACTERIAL Petrotoga mobilis SJ95t SJ95t Petrotoga mobilis SJ95 DSM 10674 Yes Gc00684 Gi01028 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Pmob 2007-11-21 Unpublished Biotechnological, Oil industry, Evolutionary 403833 17679 001358_GCAT 1216 641228500 NC_010003 Complete 11.4x 2169 2064 1 0 34.1 Sanger, 454 USA Oil field water; North Sea, Norwegian sector Production waters of a North Sea oil reservoir Anaerobe Rod-shaped Nonsporulating Thermophile Halotolerant gram- Free living None Oil fields, Marine Motile Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Delftia Delftia acidovorans BACTERIAL Delftia acidovorans SPH-1 SPH-1 Delftia acidovorans SPH-1 ATCC 15668 Yes Gc00683 Gi01332 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Daci 2007-11-21 Unpublished Biotechnological, Wastewater treatment, Oil industry 398578 17413 001744_GCAT 641228489 NC_010002 Complete 12.8x 6767 6241 1 0 66 Sanger USA Soil enriched with acetamide in Delft in the Netherlands Netherlands Soil enriched with acetamide in Delft in the Netherlands 52.011899 4.360257 Aerobe Mesophile gram- Free living None Sludge, Oil fields, Fresh water, Soil 30 Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium phytofermentans BACTERIAL Clostridium phytofermentans ISDg ISDg Clostridium phytofermentans ISDg ATCC 700394 Yes Gc00682 Gi00162 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Cphy 2007-11-21 Unpublished Ethanol production, Hydrogen production, Energy production, Ecological, Biotechnological 357809 16184 000967_GCAT 641228486 NC_010001 Complete 13x 4847 4076 1 0 35.9 Sanger USA Forest soil near the Quabbin Reservoir in Massachusetts Isolated from damp silt in the bed of an intermittent stream in a forested site near Quabbin Reservoir in Massachusetts USA 12148621 Quabbin Reservoir in Massachusetts 42.404699 -72.308526 144 meters Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Soil 37 Motile Cellulose degrader Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella baltica BACTERIAL Shewanella baltica OS195 OS195 Shewanella baltica OS195 Gc00681 Gi00964 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Sbal195 2007-11-21 Unpublished Biotechnological 399599 13389 001489_GCAT 641228507 NC_009997 Complete 10x 5347 4992 1 3 46 Sanger USA Sea-water; anoxic zone; 140 m depth from the Baltic Sea Baltic Sea 140 meters Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Marine 4 Motile Heterotroph Eukaryota Cryptophyta Hemiselmis Hemiselmis andersenii EUKARYAL Hemiselmis andersenii CCMP644 (nucleomorph) CCMP644 (nucleomorph) Gc00680 Genome Complete and Published Public Dalhousie Univ Archibald JM http://myweb.dal.ca/jmarchib/ 2007-11-16 PNAS 104, 19908-13 Evolutionary 464988 002361_GCAT 0 NC_009979, NC_009977, NC_009978 Complete 571 0 3 0 Canada Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus MIT9211 MIT9211 Prochlorococcus marinus str. MIT 9211 Gc00679 Gi00872 Genome Complete and Published Public MIT, J. Craig Venter Institute Moore Foundation Chisholm S chisholm@mit.edu http://csbi.mit.edu/faculty/Members/PennyChisholm P9211 2007-11-13 Unpublished Carbon cycle, Marine Microbial Initiative (MMI), Environmental 93059 13551 001368_GCAT 641228501 NC_009976 Complete 4 kb, 40 kb Celera 1688 1944 1 0 38 Sanger USA Equatorial Pacific at a depth of 83m on April 1992 April 1992 Equatorial Pacific 0 -140 83 meters Oval-shaped Mesophile gram- Free living Singles None Marine Nonmotile Photosynthetic Archaea Euryarchaeota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus maripaludis ARCHAEAL Methanococcus maripaludis C6 C6 Methanococcus maripaludis C6 Gc00678 Gi01307 Genome Complete and Published Public DOE Joint Genome Institute DOE Whitman WB whitman@uga.edu MmarC6 2007-11-13 Unpublished Energy production, Biotechnological 444158 19639 001820_GCAT 40 641228496 NC_009975 Complete 1744 1917 1 0 33 USA Intertidal sediments Intertidal sediments Obligate anaerobe Coccus-shaped Nonsporulating Mesophile 6.5 - 8 gram- Free living Singles None Sediment, Fresh water 20 - 45 Motile Nitrogen fixation, Methanogen, Hydrogenotrophic Lithotroph Bacteria Chloroflexi Chloroflexi (class) Herpetosiphonales Herpetosiphonaceae Herpetosiphon Herpetosiphon aurantiacus BACTERIAL Herpetosiphon aurantiacus ATCC 23779 ATCC 23779 Herpetosiphon aurantiacus ATCC 23779 DSM 785, ATCC 23779 Yes Gc00677 Gi00947 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Haur 2007-11-13 Unpublished Biotechnological 316274 16523 001142_GCAT 641228494 NC_009972 Complete 11x 6346 5402 1 2 50 Sanger USA Birch Lake in Minnesota USA 5669912 Birch Lake in Minnesota 45.040746 -94.41882 Aerobe Filament-shaped Mesophile gram- Free living None Fresh water Motile Bacteria Proteobacteria Deltaproteobacteria Myxococcales Polyangiaceae Sorangium Sorangium cellulosum BACTERIAL Sorangium cellulosum So ce56 So ce56 Sorangium cellulosum 'So ce 56' Gc00676 Gi00561 Genome Complete and Published Public Bielefeld Univ BMBF Muller R rom@mx.uni-saarland.de 2007-10-28 Nat Biotechnol. 25, 1281-9 Biotechnological 448385 28111 001504_GCAT 641228509 NC_010162 Complete 13033 9771 1 0 71 Germany Aerobe Rod-shaped Mesophile gram- Free living Clusters, Singles None Soil Motile Eukaryota Ascomycota Saccharomycetes Saccharomycetales Candida Candida albicans EUKARYAL Candida albicans SC5314 SC5314 Candida albicans SC5314 Gc00675 Gi00126 Genome Complete and Published Public Stanford Univ NIH-NIDCR, Burroughs Wellcome Fund Davis RW Dbowe@sequence.stanford.edu 2004-05-11 PNAS 101, 7329-34 Medical, Human Pathogen 237561 10701 001975_GCAT 640281004 AACQ00000000 Complete Level 2: High-Quality Draft 10.9x 28504 14144 8 0 33.4 Sanger USA Vaginal infection, Oral infection Pathogen Archaea Crenarchaeota Thermoprotei Thermoproteales Thermoproteaceae Caldivirga Caldivirga maquilingensis ARCHAEAL Caldivirga maquilingensis IC-167 IC-167 Caldivirga maquilingensis IC-167 DSM 13496 Yes Gc00674 Gi01059 Genome Complete and Published Public DOE Joint Genome Institute DOE House C chouse@geosc.psu.edu Cmaq 2007-10-05 Unpublished Biotechnological 397948 17421 001815_GCAT 203067 641228483 NC_009954 Complete 2077 2055 1 0 43 Sanger USA Acidic hot spring in the Philippines Philippines Acidic hot spring in the Philippines Aerobe Rod-shaped Nonsporulating Hyperthermophile gram- Free living None Fresh water 85 Nonmotile Heterotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micromonosporaceae Salinispora Salinispora arenicola BACTERIAL Salinispora arenicola CNS205 CNS205 Salinispora arenicola CNS-205 Gc00673 Gi01541 Genome Complete and Published Public DOE Joint Genome Institute DOE Jensen P pjensen@ucsd.edu Sare 2007-10-05 ISME J. Epub Biotechnological, Medical, Cancer treatment 391037 17109 001441_GCAT 641228504 NC_009953 Complete 11.4x 5786 5230 1 0 69.5 Sanger USA Beach sand at a depth of 1 meter from Sweetings Cay in the Bahamas Bahamas Beach sand at a depth of 1 meter from Sweetings Cay in the Bahamas 26.6000 -77.8833 1 meter Aerobe Filament-shaped Sporulating Mesophile gram+ Free living None Fresh water, Marine, Sediment Motile Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobacteraceae Desulfococcus Desulfococcus oleovorans BACTERIAL Desulfococcus oleovorans Hxd3 Hxd3 Desulfococcus oleovorans Hxd3 DSM 6200 Yes Gc00672 Gi01334 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Dole 2007-10-19 Unpublished Environmental, Biotechnological 96561 18007 001746_GCAT 257496 641228490 NC_009943 Complete 12x 3944 3368 1 0 56.1 Sanger, 454 USA Oil tank Oil tank Anaerobe Coccus-shaped Nonsporulating Mesophile gram- Free living None Fresh water, Oil fields Nonmotile Sulfate reducer, Alkane degrader Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Lachancea Lachancea waltii EUKARYAL Kluyveromyces waltii NCYC 2644 NCYC 2644 Kluyveromyces waltii NCYC 2644 ATCC 56500, NCYC 2644, CBS 6430, NRRL Y-8285 Gc00671 Gi00717 Genome Complete and Published Public Broad Institute Kellis, M manoli@mit.edu 2004-04-08 Nature 428, 617-24 Fungal Genome Initiative (FGI), Evolutionary 262981 10734 002033_GCAT 0 AADM010000000 Complete Level 2: High-Quality Draft 8x 11000 5230 8 0 0 Sanger USA None Eukaryota Apicomplexa Aconoidasida Babesiidae Babesia Babesia bovis EUKARYAL Babesia bovis T2Bo T2Bo Babesia bovis T2Bo Gc00670 Gi02145 Genome Complete and Published Public J. Craig Venter Institute USDA Nene VM vnene@som.umaryland.edu 2007-10-19 PLoS Pathog 3, e148 5865 18731 002797_GCAT 643280125 AAXT00000000 Complete Level 2: High-Quality Draft 11x 8200 3671 4 0 41.8 Sanger USA Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Xanthobacteraceae Azorhizobium Azorhizobium caulinodans BACTERIAL Azorhizobium caulinodans ORS 571 ORS 571 Azorhizobium caulinodans ORS 571 DSM 5975, ATCC 43989, CCUG 26647 Yes Gc00669 Gi01986 Genome Complete and Published Public Univ of Tokyo Oyaizu H aoyaizu@mail.ecc.u-tokyo.ac.jp AZC 2007-10-17 Unpublished Agricultural 438753 19267 002615_GCAT 4704 641228476 NC_009937 Complete 5369 4789 1 0 67.3 Japan Sesbania rostrata,stem nodules Sesbania rostrata Sesbania rostrata Mesophile gram- Symbiotic Mutualistic Sesbania rostrata None Host Nitrogen fixation Eukaryota Hexamitidae Giardia Giardia intestinalis EUKARYAL Giardia lamblia (intestinalis) WB, clone C6 WB, clone C6 Giardia lamblia ATCC 50803 WB, clone C6 ATCC 50803 Gc00668 Gi00274 Genome Complete and Published Public Marine Biological Laboratory NIH-NIAID Sogin ML http://hermes.mbl.edu/labs/Sogin/Pages/PERSONNEL/Mitch.html 2007-10-01 Science 317, 1921-6 184922 1439 001866_GCAT 640281002 NZ_AACB00000000 Complete Level 2: High-Quality Draft 11192 6598 5 0 49 Sanger USA Bacteria Cyanobacteria Acaryochloris Acaryochloris marina BACTERIAL Acaryochloris marina MBIC11017 MBIC11017 Acaryochloris marina MBIC11017 NBRC 102967 Gc00667 Gi00728 Genome Complete and Published Public Arizona State Univ, Washington Univ, TGen NSF Blankenship RE Blankenship@asu.edu AM1 2007-10-17 PNAS 105, 2005-10 Biotechnological 329726 12997 000610_GCAT 641228474 NC_009925 Complete 1860686 pOTWI3, pEpiFOS-5 6x-ABI, 24x-454 6503 8557 1 9 47 Sanger, 454-GS20 USA Prochloron-dominated colonial ascidian Lissoclinum patella off the tropical coast of the Palau islands Prochloron-dominated colonial ascidian Lissoclinum patella off the tropical coast of the Palau islands -7.532264 131.361112 Aerobe Sphere-shaped Mesophile gram- Symbiotic Lissoclinum patella None Marine Symbiont Photosynthetic Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Alkaliphilus Alkaliphilus oremlandii BACTERIAL Alkaliphilus oremlandii OhILAs OhILAs Alkaliphilus oremlandii OhILAs ATCC BAA-1360 Gc00666 Gi00933 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Clos 2007-10-11 Unpublished Environmental, Biotechnological 350688 16083 000972_GCAT 161260 641228475 NC_009922 Complete 12x 2123 3053 1 0 36 Sanger, 454 USA Anoxic sediments from the Ohio River, Pennsylvania September 15, 2000 USA Ohio River sediment Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living None Fresh water Motile Nitrogen fixation, Non-Pathogen, Arsenic metabolizer Eukaryota Streptophyta Vitales Vitaceae Vitis EUKARYAL Vitis vinifera PN40024 PN40024 Wine grape Vitis vinifera PN40024 Gc00665 Gi01530 Genome Complete and Published Public INRA, Univ of Milan, Univ of Udine, Genoscope, Univ of Padua Wincker P pwincker@genoscope.cns.fr 2007-09-27 Nature 449, 463-7 29760 18785 002312_GCAT 0 CAAP00000000 Complete Level 2: High-Quality Draft 8.4x 475000 0 19 0 0 Sanger France Eukaryota Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas EUKARYAL Chlamydomonas reinhardtii CC-503 cw92 mt+ CC-503 cw92 mt+ Chlamydomonas reinhardtii Gc00664 Gi00816 Genome Complete and Published Public DOE Joint Genome Institute DOE, NSF Grossman A arthur@andrew2.stanford.edu 2007-10-12 Science 318, 245-50 3055 12260 002199_GCAT 0 ABCN00000000 Complete Level 2: High-Quality Draft 10x 100000 15256 17 0 65 Sanger USA Massachusetts in 1945 1945 USA Massachusetts Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella pealeana BACTERIAL Shewanella pealeana ANG-SQ1, ATCC 700345 ANG-SQ1, ATCC 700345 Shewanella pealeana ATCC 700345 ATCC 700345 Yes Gc00663 Gi01355 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Spea 2007-10-04 Unpublished 398579 17415 001772_GCAT 641228508 NC_009901 Complete 10x 5174 4599 1 0 44 Sanger USA "Microbial community colonizing the accessory nidamental gland of the squid Loligo pealei, from Woods Hole Harbor, Massachusetts" USA Woods Hole Harbor, Massachusetts 41.526411 -70.680585 Loligo pealei Facultative Rod-shaped Nonsporulating Psychrotolerant gram- Free living Pairs, Singles None Host Motile Heterotroph Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia massiliae BACTERIAL Rickettsia massiliae MTU5 MTU5 Rickettsia massiliae MTU5 ATCC VR-1376 Gc00662 Gi00812 Genome Complete and Published Public CNRS CNRG Raoult D didier.raoult@medecine.univ-mrs.fr RMA 2007-10-04 Genome Res. 17, 1657-64 Medical 416276 18271 001423_GCAT 641228503 NC_009900 Complete 3 Kb, 10 Kb pCNS Phred/Phrap SelfID 1360 1438 1 1 32.5 Sanger France Rhipicephalus turanicus ticks collected on horses in Camargues, France France Camargues, France 43.881678 2.796343 Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Rhipicephalus turanicus None Host Nonmotile Non-Pathogen Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia bellii BACTERIAL Rickettsia bellii OSU 85-389 OSU 85-389 Rickettsia bellii OSU 85-389 Gc00661 Gi01647 Genome Complete and Published Public Univ of Iowa A 2007-10-02 Unpublished Medical, Human Pathogen 391896 17237 001420_GCAT 640753044 NC_009883 Complete 1528 1548 1 0 31.6 Sanger USA Isolated in Vero cell culture at 34 C by Karl Poetter and Chip Pretzman; spaghetti forms seen Isolated in Vero cell culture at 34 C by Karl Poetter and Chip Pretzman; spaghetti forms seen Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Dermacentor variabilis adult female tick Epidemic typhus Host Nonmotile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia canadensis BACTERIAL Rickettsia canadensis McKiel McKiel Rickettsia canadensis str. McKiel Gc00660 Gi01536 Genome Complete and Published Public Univ of Iowa A 2007-10-01 Unpublished Medical, Human Pathogen 293613 12952 001421_GCAT 640753045 NC_009879 Complete 1159 1164 1 0 31 Sanger USA Ticks in Canada Canada Ticks in Canada Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Tick Epidemic typhus Host Nonmotile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Dinoroseobacter Dinoroseobacter shibae BACTERIAL Dinoroseobacter shibae DFL-12 DFL-12 Dinoroseobacter shibae DFL 12 NCIMB 14021, DSM 16493 Yes Gc00659 Gi01335 Genome Complete and Published Public DOE Joint Genome Institute DOE Wagner-Dobler I Irene.Wagner-Doebler@helmholtz-hzi.de Dshi 2007-10-05 ISME Journal Epub 398580 17417 001747_GCAT 188142 641228491 NC_009952 Complete 12x 3789 4321 1 5 65 Sanger USA Marine dinoflagellates from the Bay of Tokyo Japan Marine dinoflagellates from the Bay of Tokyo 35.648504 139.763947 Aerobe Mesophile gram- Free living None Fresh water 33 Motile Anoxygenic Phototroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Frankiaceae Frankia Frankia sp. EAN1pec BACTERIAL Frankia sp. Mbj2, EAN1pec Mbj2, EAN1pec Frankia sp. EAN1pec Gc00658 Gi00260 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Franean1 2007-10-10 Unpublished Biotechnological 298653 13915 001091_GCAT 641228492 NC_009921 Complete 9035 7306 1 0 70.9 Sanger USA Kettering Research Laboratory in Ohio by M Lalonde in 1978 1978 USA Kettering Research Laboratory in Ohio by M Lalonde in 1978 39.689 -84.168 Plants Aerobe Filament-shaped Sporulating Mesophile gram+ Symbiotic Mutualistic None Soil, Plant symbiont Nonmotile Non-Pathogen, Nitrogen fixation Chemoorganotroph Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Arcobacter Arcobacter butzleri BACTERIAL Arcobacter butzleri RM4018 RM4018 Arcobacter butzleri RM4018 Gc00657 Genome Complete and Published Public ARS-USDA, Agencourt Bioscience USDA Miller WG bmiller@pw.usda.gov Abu 2007-09-27 PLoS ONE 2, e1358 Medical, Human Pathogen 367737 16319 003099_GCAT 245824 640753004 NC_009850 Complete derivative of the type strain ATCC 49616 Paracel 5.5x ORFscan 2341 2347 1 0 27 Sanger USA Human patient with gastroenteritis Human patient with gastroenteritis Homo sapiens Patient with gastroenteritis Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Gastroenteritis, Bacteremia Fresh water, Marine, Host 28 Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus pumilus BACTERIAL Bacillus pumilus SAFR-032 SAFR-032 Bacillus pumilus SAFR-032 Gc00656 Gi00716 Genome Complete and Published Public BCM-HGSC NSF Highlander, SK sarahh@bcm.tmc.edu BPUM 2007-09-26 PLoS ONE 2, e928 Bioenergy, Medical, Biotechnological 315750 20391 000741_GCAT 251227 640753007 NC_009848 Complete 3704 3913 1 0 41.3 USA Spacecraft Assembly Facility at NASA Jet Propulsion Laboratory USA Spacecraft Assembly Facility at NASA Jet Propulsion Laboratory Aerobe Rod-shaped Sporulating Mesophile gram+ Free living None Soil Motile Radiation resistant, Pathogen, Biomass degrader Eukaryota Chordata Mammalia Primates Hominidae Homo EUKARYAL Homo sapiens JC Venter JC Venter Homo sapiens Gc00655 Gi02160 Genome Complete and Published Public J. Craig Venter Institute Levy S slevy@jcvi.org 2007-09-21 PLoS Biology 5, e254 Medical 9606 19621 002812_GCAT 0 ABBA01000000 Complete Level 2: High-Quality Draft 7.5x 2782357 0 24 0 0 Sanger USA Sperm and white blood cells of a single Human individual Sperm and white blood cells of a single Human individual Aerobe Mesophile 36 Male, Caucasian Eukaryota Ascomycota Sordariomycetes Hypocreales Nectriaceae Gibberella Gibberella zeae EUKARYAL Fusarium graminearum PH-1 PH-1 Gibberella zeae PH-1 NRRL 31084 Gc00654 Gi00263 Genome Complete and Published Public Broad Institute, IGGR NRI Webmaster annotation-info@genome.wi.mit.edu FG 2007-09-07 Science 317, 1400-2 Agricultural, Plant Pathogen, Fungal Genome Initiative (FGI) 229533 13839 002010_GCAT 640281006 AACM02000000 Complete Level 2: High-Quality Draft 10x 36331 11640 4 0 48.3 Sanger USA Mesophile Head blight Pathogen, Mycotoxin producer Eukaryota Nematoda Chromadorea Spirurida Onchocercidae Brugia EUKARYAL Brugia malayi NIAID/TRS NIAID/TRS Brugia malayi Gc00653 Gi00102 Genome Complete and Published Public Univ of Pittsburgh, J. Craig Venter Institute NIH-NIAID Ghedin E GhedinE@dom.pitt.edu 2007-09-21 Science 317, 1756 - 1760 6279 10729 002123_GCAT 0 AAQA00000000 Complete Level 2: High-Quality Draft 90000 11500 6 0 30.5 Sanger USA Mesophile Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni jejuni 81116 81116 Campylobacter jejuni subsp. jejuni 81116 NCTC 11828 Gc00652 Gi01671 Genome Complete and Published Public BBSRC C8J 2007-09-20 J. Bacteriology 189(22):8402-3 Medical, Human Pathogen 407148 17953 000823_GCAT 640753013 NC_009839 Complete 419928 30x 1628 1734 1 0 30 Sanger United Kingdom Waterborne outbreak in 1982 1982 Waterborne outbreak in 1982 Homo sapiens Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Chains, Singles Food poisoning Wastewater Motile Pathogen, Food poisoning Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus MIT9215 MIT9215 Prochlorococcus marinus str. MIT 9215 Gc00651 Gi01896 Genome Complete and Published Public DOE Joint Genome Institute DOE Chisholm S chisholm@mit.edu P 2007-09-20 PLoS Genetics 3, e231 Environmental, Carbon cycle 93060 18633 001369_GCAT 640753041 NC_009840 Complete 3Kb 20x Crtiica, Glimmer 1738 2098 1 0 31.1 454, Sanger USA 5m depth at Equatorial Pacific on October 1992 October 1992 Equatorial Pacific Oval-shaped Mesophile gram- Free living Singles None Marine Nonmotile Photosynthetic Bacteria Chloroflexi Chloroflexi (class) Chloroflexales Chloroflexaceae Roseiflexus Roseiflexus castenholzii BACTERIAL Roseiflexus castenholzii HLO8, DSM 13941 HLO8, DSM 13941 Roseiflexus castenholzii DSM 13941 DSM 13941 Yes Gc00650 Gi00962 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Rcas 2007-08-13 Unpublished Biotechnological 383372 13462 001429_GCAT 193341 640753047 NC_009767 Complete 10x 5723 4559 1 0 60.7 Sanger USA Hot spring microbial mat Hot spring microbial mat Facultative Filament-shaped Nonsporulating Thermophile gram- Free living None Hot spring, Marine 50 Motile Photosynthetic, Photoautotroph Bacteria Thermotogae Thermotogae (class) Thermotogales Thermotogaceae Thermotoga Thermotoga lettingae BACTERIAL Thermotoga lettingae TMOT TMOT Thermotoga lettingae TMO Gc00649 Gi01044 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Tlet 2007-09-18 Unpublished Evolutionary, Biotechnological 416591 15644 001609_GCAT 239729 641228511 NC_009828 Complete 2135 2141 1 0 38.7 Sanger USA "Methanol-degrading, sulfate-reducing bioreactor" Methanol-degrading, sulfate-reducing bioreactor Anaerobe Rod-shaped Nonsporulating Thermophile gram- Free living None Fresh water 65 Motile Methanol degrading Heterotroph Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Vanderwaltozyma Vanderwaltozyma polyspora EUKARYAL Vanderwaltozyma polyspora DSM 70294 DSM 70294 Vanderwaltozyma polyspora DSM 70294 DSM 70294 Gc00648 Gi02041 Genome Complete and Published Public Trinity College Wolfe KH http://wolfe.gen.tcd.ie/ 2007-08-17 PNAS 104, 8397-8402 Evolutionary 436907 19237 002688_GCAT 0 NZ_AAZN00000000 Complete Level 2: High-Quality Draft 7.8x 14661 5367 33 Sanger Ireland Mesophile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Serratia Serratia proteamaculans BACTERIAL Serratia proteamaculans 568 568 Serratia proteamaculans 568 Gc00647 Gi01353 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Spro 2007-09-18 Unpublished Bioremediation, Medical, Human Pathogen, Environmental 399741 17459 001770_GCAT 242207 640753048 NC_009832 Complete 11.7x 5448 5170 1 1 55 Sanger USA Facultative Rod-shaped Mesophile gram- Free living Pneumonia Host, Soil Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella sediminis BACTERIAL Shewanella sediminis HAW-EB3 HAW-EB3 Shewanella sediminis HAW-EB3 DSM 17055, NCIMB 14036 Yes Gc00646 Gi01356 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Ssed 2007-09-18 Unpublished Degrades RDX, Biotechnological 425104 18789 001773_GCAT 640753050 NC_009831 Complete 5517 4828 1 0 46 Sanger USA Sediment at depth of 215m from an unexploded-ordinance-dumping site at Halifax Canada Halifax, Canada 44.646244 -63.573566 215 meters Facultative Rod-shaped Nonsporulating Psychrophile gram- Free living Pairs, Singles None Marine 10 Motile Heterotroph Eukaryota Cnidaria Anthozoa Actiniaria Edwardsiidae Nematostella EUKARYAL Nematostella vectensis CH2 x CH6 CH2 x CH6 Sea anemone Nematostella vectensis CH2 x CH6 Gc00645 Gi00773 Genome Complete and Published Public DOE Joint Genome Institute DOE Rokhsar D http://mcb.berkeley.edu/faculty/GEN/rokhsard.html 2007-08-22 Science 317, 86-94 Model organism 45351 12581 002244_GCAT 0 NZ_ABAV00000000 Complete Level 2: High-Quality Draft 7.8x 297398 0 40.6 Sanger USA Mesophile Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus BACTERIAL Campylobacter concisus 13826 13826 Campylobacter concisus 13826 Gc00644 Gi01266 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Nelson KE http://www.tigr.org/~kenelson/ CCC13826 2007-09-12 Unpublished Medical, Human Pathogen 360104 17159 000829_GCAT 172688 640753009 NC_009802 Complete 2052 2235 1 2 39.3 Sanger USA Feces of a patient with bloody diarrhea in Denmark Denmark Feces of a patient with bloody diarrhea in Denmark Homo sapiens Patient with bloody diarrhea Gastrointestinal tract Feces Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Singles, Chains Periodontosis, Gastroenteritis, Gingivitis, Periodontitis Host, Wastewater Motile Pathogen, Food poisoning Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus gordonii BACTERIAL Streptococcus gordonii Challis CH1 Challis CH1 Streptococcus gordonii str. Challis substr. CH1 NCTC7868, ATCC 35105 Gc00643 Gi00608 Genome Complete and Published Public J. Craig Venter Institute NIH-NIDCR Gill SR srgill@tigr.org SGO 2007-09-11 Unpublished Medical, Human Pathogen 467705 66 001537_GCAT 244708 640753055 NC_009785 Complete 2196 2220 1 0 42 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Periodontal infection, Dental plaque, Endocarditis Host, Human oral microflora 37 Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Citrobacter Citrobacter koseri BACTERIAL Citrobacter koseri CDC 4225-83 CDC 4225-83 Citrobacter koseri ATCC BAA-895 SGSC4696, ATCC BAA-895 Gc00642 Gi00708 Genome Complete and Published Public Washington Univ NIH-NIAID Clifton S sclifton@watson.wustl.edu CKO 2007-09-11 Unpublished Animal Pathogen, Medical, Human Pathogen 290338 12716 000962_GCAT 640753015 NC_009792 Complete 8x 4720 5252 1 2 53.8 Sanger USA 1983 in Maryland where it caused neonatal meningitis 1983 USA 1983 in Maryland where it caused neonatal meningitis Homo sapiens Intestinal tract Facultative Mesophile gram- Free living Neonatal meningitis, Bacteremia, Brain abscesses, Meningoencephalitis Host, Food, Fresh water, Soil, Intestinal microflora Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O139:H28 E24377A (ETEC) E24377A (ETEC) O139:H28 Escherichia coli E24377A Gc00641 Gi00940 Genome Complete and Published Public J. Craig Venter Institute Ravel J http://www.tigr.org/faculty/Ravel_Jacques/index.shtml EcE24377A 2007-09-11 Unpublished Human Pathogen, Medical 331111 13960 001030_GCAT 241150 640753024 NC_009801 Complete 4979 5280 1 6 50 Sanger USA ETEC strain Homo sapiens Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs Diarrhea Host, Human intestinal microflora 37 Motile Pathogen, Enterotoxigenic Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O9 HS HS O9 Escherichia coli HS Gc00640 Gi01140 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Ravel J http://www.tigr.org/faculty/Ravel_Jacques/index.shtml EcHS 2007-09-10 Unpublished Medical, Human Pathogen 331112 13959 001037_GCAT 245369 640753025 NC_009800 Complete 4643 4650 1 0 50 Sanger USA Walter Reed Army Institute of Research in 1978 Commensal strain 1978 USA Walter Reed Army Institute of Research in 1978 Homo sapiens Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Commensal Pairs, Singles None Host, Human intestinal microflora Motile Non-Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus Mu3 Mu3 Staphylococcus aureus subsp. aureus Mu3 CIP 106415, ATCC 700698, CCUG 45316 No Gc00639 Genome Complete and Published Public Juntendo Univ Hiramatsu K khiram06@med.juntendo.ac.jp SAHV 2007-09-04 Unpublished Animal Pathogen, Cattle Pathogen, Poultry Pathogen, Medical, Human Pathogen 418127 18509 003050_GCAT 248084 640753053 NC_009782 Complete 2880 2792 1 0 32.9 Japan sputum from a lung cancer patient with MRSA pneumonia, Japan 1996 Japan Homo sapiens Patient with lung cancer Airways Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Mastitis, Nosocomial infection Host 30 - 37 Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Cronobacter Enterobacter sakazakii BACTERIAL Enterobacter sakazakii ATCC BAA-894 ATCC BAA-894 Cronobacter sakazakii ATCC BAA-894 ATCC BAA-894 Gc00638 Gi00537 Genome Complete and Published Public Washington Univ NIH-NIAID Clifton S sclifton@watson.wustl.edu ESA 2007-08-28 Unpublished Medical, Human Pathogen 290339 12720 001451_GCAT 640753022 NC_009778 Complete 8x 4368 4653 1 2 87 Sanger USA Powdered milk formula fed to a hospitalized neonate that developed an infection Powdered milk formula fed to a hospitalized neonate that developed an infection Facultative Rod-shaped Mesophile gram- Free living Septicemia, Meningitis, Necrotizing enterocolitis Host 37 Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio harveyi BACTERIAL Vibrio harveyi BB120, ATCC BAA-1116 BB120, ATCC BAA-1116 Vibrio harveyi ATCC BAA-1116 ATCC BAA-1116 Gc00637 Gi01254 Genome Complete and Published Public Princeton Univ, Washington Univ NSF Bassler B http://www.molbio.princeton.edu/research_facultymember.php?id=5 VIBHAR 2007-08-28 Unpublished Environmental 338187 19857 001691_GCAT 640753058 NC_009784, NC_009783 Complete 10.8x 5969 6373 2 1 85 454, Sanger USA Ocean isolate obtained in 1993 1993 Ocean isolate obtained in 1993 Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Marine 20 - 30 Motile Bioluminescent Heterotroph Archaea Crenarchaeota Thermoprotei Desulfurococcales Desulfurococcaceae Ignicoccus Ignicoccus hospitalis ARCHAEAL Ignicoccus hospitalis Kin4/I, DSM 18386 Kin4/I, DSM 18386 Ignicoccus hospitalis KIN4/I DSM 18386 Yes Gc00636 Gi01875 Genome Complete and Published Public DOE Joint Genome Institute DOE Podar M podarm@ornl.gov Igni 2007-08-29 Genome Biology 9(11):R158 Biotechnological 453591 13914 001809_GCAT 252944 640753029 NC_009776 Complete 3Kb, 6Kb, 40Kb Phred/Phrap/Consed 12x Crtiica, Glimmer 1297 1544 1 0 61.2 Sanger USA "Shallow marine hydrothermal system of the Kolbeinsey Ridge, north of Iceland" Iceland Shallow marine hydrothermal system of the Kolbeinsey Ridge, north of Iceland 66.67 -18.50 Anaerobe Coccus-shaped Nonsporulating Hyperthermophile gram- Symbiotic Nanoarchaeum equitans None Marine, Hydrothermal vent Motile Chemolithoautotroph Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis holarctica FTA FTA Francisella tularensis subsp. holarctica FTNF002-00 Gc00635 Gi02287 Genome Complete and Published Public Los Alamos National Laboratory, DOE Joint Genome Institute, BioHealthBase Brettin T brettin@lanl.gov FTA 2007-08-23 Unpublished Biothreat, Medical, Human Pathogen 458234 20197 003009_GCAT 238154 640753028 NC_009749 Complete 1890 2179 1 0 32 Sanger USA Patient with type B tularemia Patient with type B tularemia Homo sapiens Patient with type B tularemia Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Tularemia Fresh water, Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Legionellales Coxiellaceae Coxiella Coxiella burnetii BACTERIAL Coxiella burnetii Dugway 5J108-111 (7E9-12) Dugway 5J108-111 (7E9-12) Coxiella burnetii Dugway 5J108-111 Gc00634 Gi01269 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Samuel JE jsamuel@medicine.tamhsc.edu COXBU7E912 2007-08-01 Infect Immunity 77, 642-56 Animal Pathogen, Medical, Human Pathogen, Biothreat 434922 16721 000983_GCAT 640753021 NC_009727 Complete 15.07x 2158 2301 1 1 42 Sanger USA Rodents in Utah USA Rodents in Utah Facultative Coccus-shaped Sporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Singles Food poisoning, Q fever Host Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus amyloliquefaciens BACTERIAL Bacillus amyloliquefaciens FZB42 FZB42 Bacillus amyloliquefaciens FZB42 No Gc00633 Gi00049 Genome Complete and Published Public Competence Network, Goettingen Genomics Laboratory Borriss R rainer.borriss@rz.hu-berlin.de RBAM 2007-08-01 Nature Biotechnol 25, 1007-14 Agricultural, Suppresses Plant Pathogens, Biotechnological, Antibiotic production 326423 13403 000711_GCAT 242694 640753005 NC_009725 Complete 3918 3834 1 0 46 Germany Soil Soil Aerobe Rod-shaped Sporulating Mesophile gram+ Free living None Rhizosphere-colonizing, Soil Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Xanthobacteraceae Xanthobacter Xanthobacter autotrophicus BACTERIAL Xanthobacter autotrophicus Py2 Py2 Xanthobacter autotrophicus Py2 ATCC 35674, DSM 432 Yes Gc00632 Gi00972 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Xaut 2007-07-30 Unpublished Environmental, Bioremediation 78245 15756 001697_GCAT 246824 640753059 NC_009720 Complete 12x 5308 5211 1 1 67 Sanger USA Facultative Rod-shaped Mesophile gram- Free living None Fresh water, Sediment, Soil Motile Nitrogen fixation Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Phyllobacteriaceae Parvibaculum Parvibaculum lavamentivorans BACTERIAL Parvibaculum lavamentivorans DS-1 DS-1 Parvibaculum lavamentivorans DS-1 DSM 13023, NCIMB 13966 Yes Gc00631 Gi01347 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Plav 2007-07-30 Unpublished Biotechnological, Bioremediation 402881 17639 001764_GCAT 101358 640753040 NC_009719 Complete 17.5x 3914 3752 1 0 62 Sanger USA Sewage treatment plant in Germany Germany Sewage treatment plant in Germany Aerobe Rod-shaped Mesophile gram- Free living None Sludge 30 Motile Surfactant-degrading Heterotroph Bacteria Thermotogae Thermotogae (class) Thermotogales Thermotogaceae Fervidobacterium Fervidobacterium nodosum BACTERIAL Fervidobacterium nodosum Rt17-B1 Rt17-B1 Fervidobacterium nodosum Rt17-B1 DSM 5306, ATCC 35602 Yes Gc00630 Gi01012 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Fnod 2007-07-30 Unpublished Evolutionary, Biotechnological 381764 16719 001054_GCAT 241363 640753026 NC_009718 Complete 11.5x 1948 1895 1 0 34 Sanger USA Hot spring in New Zealand New Zealand Hot spring in New Zealand Anaerobe Rod-shaped Nonsporulating Thermophile gram- Free living None Fresh water, Hot spring 70 Motile Chemoorganotroph Archaea Euryarchaeota Methanomicrobia Methanomicrobiales Candidatus Methanoregula Candidatus Methanoregula boonei ARCHAEAL Candidatus Methanoregula boonei 6A8 6A8 Candidatus Methanoregula boonei 6A8 Gc00629 Gi01473 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Mboo 2007-07-26 Unpublished Energy production, Biotechnological 456442 18505 001806_GCAT 243787 640753014 NC_009712 Complete 2542 2568 1 0 54 Sanger USA Acidic peat bog in New York State USA Acidic peat bog in New York State Anaerobe Rod-shaped Mesophile 4 - 6 gram- Free living None Fresh water 37 Methanogen, Acidophile Lithotroph Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter curvus BACTERIAL Campylobacter curvus 525.92 525.92 Campylobacter curvus 525.92 Gc00628 Gi01267 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Nelson K http://www.tigr.org/~kenelson/ 2007-07-25 Unpublished Medical, Human Pathogen 360105 17161 000830_GCAT 165799 640753010 NC_009715 Complete 1971 2163 1 0 44 Sanger USA Feces of a patient with diarrhea in South Africa South Africa Feces of a patient with diarrhea in South Africa Homo sapiens Patient with diarrhea Gastrointestinal tract Feces Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Singles, Chains Gastroenteritis, Periodontal infection Wastewater, Host Motile Pathogen, Food poisoning Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter hominis BACTERIAL Campylobacter hominis ATCC BAA-381 ATCC BAA-381 Campylobacter hominis ATCC BAA-381 ATCC BAA-381, NCTC 13146T, LMG 19568T Gc00627 Gi01268 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Nelson K http://www.tigr.org/~kenelson/ CHAB381 2007-07-25 Unpublished Medical 360107 20083 000831_GCAT 246717 640753011 NC_009714 Complete 1711 1850 1 1 31 Sanger USA Feces of a healthy human in 2001 2001 Feces of a healthy human in 2001 Homo sapiens Healthy Gastrointestinal tract Feces Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Singles, Chains None Gastrointestinal tract, Host 37 Motile Non-Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni doylei 269.97 269.97 Campylobacter jejuni subsp. doylei 269.97 Gc00626 Gi01293 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Nelson K http://www.tigr.org/~kenelson/ JJD26997 2007-07-20 Unpublished Animal Pathogen, Poultry Pathogen, Medical, Human Pathogen 360109 17163 000828_GCAT 170358 640753012 NC_009707 Complete 1845 2083 1 0 30 Sanger USA Human blood Human blood Homo sapiens Blood Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Singles, Chains Bacteremia Host, Wastewater, Blood Motile Pathogen, Food poisoning Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pseudotuberculosis BACTERIAL Yersinia pseudotuberculosis IP 31758 IP 31758 Yersinia pseudotuberculosis IP 31758 Gc00625 Gi01174 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Ravel J http://www.tigr.org/faculty/Ravel_Jacques/index.shtml YpsIP31758 2007-07-23 PLoS Genetics 3(8), e142 Medical, Human Pathogen 349747 16070 001723_GCAT 640753060 NC_009708 Complete 4723 4599 1 2 47 USA Stools of a patient presenting with scarlet-like fever in the Primorski region of the former USSR on 1996 1996 Russia Stools of a patient presenting with scarlet-like fever in the Primorski region of the former USSR on 1996 45.052564 135 Homo sapiens Patient with scarlet-like fever Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Food poisoning, Gastroenteritis Host Motile Pathogen Heterotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium kluyveri BACTERIAL Clostridium kluyveri DSM 555 DSM 555 Clostridium kluyveri DSM 555 DSM 555 Yes Gc00624 Gi01951 Genome Complete and Published Public Goettingen Genomics Laboratory, Max Planck Institute Thauer RK thauer@mpi-marburg.mpg.de CKL 2007-07-19 PNAS 105, 2128-33 Biotechnological 431943 19065 002577_GCAT 640753020 NC_009706 Complete 1.5 Kb, 4 Kb Phrap 6.8x YACOP 3964 4075 1 1 32 454-GS20, Sanger Germany "Mud of a canal in Delft, The Netherlands" Netherlands Mud of a canal in Delft, The Netherlands 52.011899 4.360257 Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Mud, Fresh water Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum A BoNT/A1 ATCC 19397 BoNT/A1 ATCC 19397 Clostridium botulinum A str. ATCC 19397 ATCC 19397 Gc00623 Gi01979 Genome Complete and Published Public Los Alamos National Laboratory, DOE Joint Genome Institute DOE, NIH-NIAID, DoD Brettin T brettin@lanl.gov CLB 2007-07-20 PLoS ONE 2, e1271 Biothreat, Medical, Human Pathogen 441770 19517 002606_GCAT 248269 640753017 NC_009697 Complete Phrap Critica, Glimmer 2.0 3863 3799 1 0 28 Sanger USA Laboratory strain probably from foodborne botulism cases in the western US USA Laboratory strain probably from foodborne botulism cases in the western US Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Botulism Soil 35 - 40 Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum F Langeland Langeland Clostridium botulinum F str. Langeland Gc00622 Gi01981 Genome Complete and Published Public Los Alamos National Laboratory, DOE Joint Genome Institute Brettin T brettin@lanl.gov CLI 2007-07-20 Unpublished Biothreat, Medical, Human Pathogen 441772 19519 002608_GCAT 640753019 NC_009699 Complete 3885 3961 1 1 28 USA Home-prepared liver paste involved in an outbreak of foodborne botulism on the island of Langeland in Denmark in 1958 1958 Denmark Home-prepared liver paste involved in an outbreak of foodborne botulism on the island of Langeland in Denmark in 1958 54.943172 10.775886 Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Botulism Host 37 Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum A BoNT/A1 Hall BoNT/A1 Hall Clostridium botulinum A str. Hall Gc00621 Gi01980 Genome Complete and Published Public Los Alamos National Laboratory, DOE Joint Genome Institute DOE, NIH-NIAID, DoD Brettin T brettin@lanl.gov CLC 2007-07-20 PLoS ONE 25, 1281-9 Biothreat, Medical, Human Pathogen 441771 19521 002607_GCAT 640753018 NC_009698 Complete Phrap Critica, Glimmer 2.0 3760 3713 1 0 28 Sanger USA Harvard University in 1947 1947 USA Harvard University in 1947 42.374554 -71.116818 Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Botulism Soil 35 - 40 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Epsilonproteobacteria Sulfurovum Sulfurovum sp. NBC37-1 BACTERIAL Sulfurovum sp NBC37-1 NBC37-1 Sulfurovum sp. NBC37-1 Gc00620 Genome Complete and Published Public JAMSTEC MEXT Nakagawa S nakagawas@jamstec.go.jp SUN 2007-07-20 PNAS 104, 12146-50 Environmental 387093 18965 002992_GCAT 640753056 NC_009663 Complete 1.52.2kb, 35kb Phred/Phrap 8x Glimmer, GeneMarkS 2562 2524 1 0 43 Sanger Japan 30-m-tall sulfide mound in the Iheya North field, Japan (water depth, 1,000 m) Japan 16156735 30-m-tall sulfide mound in the Iheya North field, Japan (water depth, 1,000 m) 27.783333 126.883333 1000 meters Anaerobe Rod-shaped Thermophile gram- Free living None Deep sea, Hydrothermal vent, Marine Nonmotile Chemolithoautotroph Bacteria Proteobacteria Epsilonproteobacteria Nitratiruptor Nitratiruptor sp. SB155-2 BACTERIAL Nitratiruptor sp SB155-2 SB155-2 Nitratiruptor sp. SB155-2 Gc00619 Genome Complete and Published Public JAMSTEC MEXT Nakagawa S nakagawas@jamstec.go.jp NIS 2007-07-20 PNAS 104, 12146-50 Environmental 387092 18963 002991_GCAT 640753037 NC_009662 Complete 1877 1959 1 0 39 Sanger Japan 30-m-tall sulfide mound in the Iheya North field, Japan Japan 30-m-tall sulfide mound in the Iheya North field, Japan 27.783333 126.883333 Anaerobe Rod-shaped Thermophile gram- Free living None Deep sea, Hydrothermal vent, Marine Nonmotile Chemolithoautotroph Bacteria Proteobacteria Deltaproteobacteria Myxococcales Myxococcaceae Anaeromyxobacter Anaeromyxobacter sp. Fw109-5 BACTERIAL Anaeromyxobacter sp Fw109-5 Fw109-5 Anaeromyxobacter sp. Fw109-5 Gc00618 Gi01322 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Anae109 2007-07-17 Unpublished Environmental, Bioremediation 404589 17729 001731_GCAT 179879 640753003 NC_009675 Complete 5277 4603 1 0 74 Sanger USA Anaerobe Rod-shaped Sporulating Mesophile gram- Free living None Soil Motile Heterotroph Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus cytotoxis NVH 391-98 NVH 391-98 Bacillus cereus subsp. cytotoxis NVH 391-98 Gc00617 Gi00792 Genome Complete and Published Public INRA, DOE Joint Genome Institute DOE Sorokin A sorokine@jouy.inra.fr Bcer98 2007-07-17 Unpublished Medical 315749 13624 000735_GCAT 242541 640753006 NC_009674 Complete 10x 4087 4308 1 1 35.9 Sanger International Facultative Rod-shaped Sporulating Psychrotolerant gram+ Free living None Soil Motile Non-Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Ochrobactrum Ochrobactrum anthropi BACTERIAL Ochrobactrum anthropi ATCC 49188 ATCC 49188 Ochrobactrum anthropi ATCC 49188 ATCC 49188 Gc00616 Gi01920 Genome Complete and Published Public Lawrence Livermore National Lab, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Oant 2007-07-10 Unpublished Medical, Human Pathogen 439375 19485 002544_GCAT 251840 640753038 NC_009668, NC_009667 Complete 4783 4999 2 4 56 Sanger USA Aerobe Rod-shaped Mesophile gram- Free living Meningitis Host, Soil, Sludge Motile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Kineosporiaceae Kineococcus Kineococcus radiotolerans BACTERIAL Kineococcus radiotolerans SRS30216 SRS30216 Kineococcus radiotolerans SRS30216 DSM 14245, ATCC BAA-149 Yes Gc00615 Gi00303 Genome Complete and Published Public Savannah River Site, DOE Joint Genome Institute DOE Fliermans C carl.fliermans@srs.gov Krad 2007-07-10 Unpublished Environmental, Bioremediation 266940 10689 001145_GCAT 640753031 NC_009664 Complete 4761 4832 1 2 74.2 Sanger USA High-level radioactive waste cell at the Savannah River Site in Aiken of South Carolina in 2002 2002 USA Aiken of South Carolina 33.283615 -81.726394 Aerobe Coccus-shaped Nonsporulating Mesophile 5 - 9 gram+ Free living None Fresh water Motile Radiation resistant, Orange-colored Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella baltica BACTERIAL Shewanella baltica OS185 OS185 Shewanella baltica OS185 Gc00614 Gi01655 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Shew185 2007-07-10 Unpublished Biotechnological 402882 17643 001490_GCAT 255231 640753049 NC_009665 Complete 10x 5229 4732 1 1 51 Sanger USA Sea-water; oxicanoxic interface; 120 m depth from the Baltic Sea Baltic Sea Facultative Rod-shaped Nonsporulating Psychrotolerant gram- Free living Pairs, Singles None Marine 4 Motile Heterotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium BACTERIAL Janthinobacterium sp. Marseille Marseille Janthinobacterium sp. Marseille CCUG 50593, CIP 107820 Gc00613 Gi01533 Genome Complete and Published Public CNRS Audic, S Stephane.Audic@igs.cnrs-mrs.fr mma 2007-07-06 PLoS Genet 3(8), e138 Medical, Environmental 375286 16549 001144_GCAT 252382 640753030 NC_009659 Complete 9x 4110 3802 1 0 54.2 Sanger France Solution used in kidney dialysis Solution used in kidney dialysis Rod-shaped Mesophile gram- Free living None Fresh water 30 Motile Bacteria Proteobacteria Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas sp. MWYL1 BACTERIAL Marinomonas sp MWYL1 MWYL1 Marinomonas sp. MWYL1 Gc00612 Gi01340 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Mmwyl1 2007-07-05 Unpublished Environmental 400668 17445 001755_GCAT 181319 640753033 NC_009654 Complete 5100 4706 1 0 42.5 Sanger USA Aerobe Rod-shaped Mesophile gram- Free living None Marine Motile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa PA7 PA7 Pseudomonas aeruginosa PA7 Gc00611 Gi01274 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID PSPA 2007-07-05 Unpublished Agricultural, Animal Pathogen, Plant Pathogen, Medical, Human Pathogen 381754 16720 001382_GCAT 250956 640753042 NC_009656 Complete 6588 6446 1 0 66 Sanger USA clinical isolate clinical isolate Homo sapiens Patient Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Opportunistic infection Host, Soil, Fresh water 25 - 30 Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus succinogenes BACTERIAL Actinobacillus succinogenes 130Z 130Z Actinobacillus succinogenes 130Z ATCC 55618 Yes Gc00610 Gi00920 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Asuc 2007-07-05 Unpublished Succinic-acid production, Biotechnological 339671 13370 000646_GCAT 139012 640753001 NC_009655 Complete 10x 2319 2276 1 0 44 Sanger USA Bovine rumen Bovine rumen Bovine Rumen Facultative Rod-shaped Mesophile gram- Free living None Bovine rumen, Host Capnophilic Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Klebsiella Klebsiella pneumoniae BACTERIAL Klebsiella pneumoniae MGH78578 MGH78578 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 ATCC 700721 Gc00609 Gi00306 Genome Complete and Published Public Washington Univ NIH-NIAID Clifton S sclifton@watson.wustl.edu KPN 2007-07-05 Unpublished Animal Pathogen, Medical, Human Pathogen, Cattle Pathogen 272620 31 001147_GCAT 248427 640753032 NC_009648 Complete 5315 5417 1 5 40 Sanger USA Patient in 1994 1994 Patient in 1994 Homo sapiens Patient Gastrointestinal tract Feces Facultative Rod-shaped Mesophile gram- Free living Urinary tract infection, Bacteremia, Pneumonia Intestinal microflora, Host, Mouth microflora, Skin microflora, Soil, Fresh water 37 Nonmotile Pathogen, Lactose fermenting Eukaryota Streptophyta Malpighiales Salicaceae Populus EUKARYAL Populus balsamifera trichocarpa Populus trichocarpa Gc00608 Gi00477 Genome Complete and Published Public Swedish Univ of Agricultural Sciences, DOE Joint Genome Institute, Genome Canada, Univ of Washington, Oak Ridge National Lab DOE Tuskan GA gtk@ornl.gov 2006-09-15 Science 313, 1596-604 Agricultural 3694 10772 002292_GCAT 0 NC_008467-85 Complete Level 2: High-Quality Draft 7.5x 550000 45000 10 0 33.7 Sanger USA Mesophile Eukaryota Peronosporales Phytophthora EUKARYAL Phytophthora sojae P6497 P6497 Phytophthora sojae Gc00607 Gi00452 Genome Complete and Published Public Virginia Polytechnic Institute, DOE Joint Genome Institute DOE, NSF, USDA Tyler B http://www.vbi.vt.edu/staff/perspage_fcty/fcty_tyler_bret.htm 2006-09-01 Science 313, 1261-6 Plant Pathogen, Agricultural 67593 17989 002165_GCAT 0 AAQY00000000 Complete Level 2: High-Quality Draft 62000 0 0 Sanger USA Mesophile Root rot Pathogen Eukaryota Peronosporales Phytophthora EUKARYAL Phytophthora ramorum Pr102, UCD Pr4 Pr102, UCD Pr4 Phytophthora ramorum Gc00606 Gi00450 Genome Complete and Published Public Virginia Polytechnic Institute, DOE Joint Genome Institute DOE, NSF, USDA Tyler B http://www.vbi.vt.edu/staff/perspage_fcty/fcty_tyler_bret.htm 2006-09-01 Science 313, 1261-6 Plant Pathogen, Agricultural 164328 12571 002164_GCAT 0 AAQX00000000 Complete Level 2: High-Quality Draft 7x 65000 15743 0 Sanger USA Mesophile Sudden Oak Death Pathogen Eukaryota Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia EUKARYAL Paramecium tetraurelia d4-2 d4-2 Paramecium tetraurelia strain d4-2 Gc00605 Gi00432 Genome Complete and Published Public Genoscope, International Consortium Sperling L sperling@cgm.cnrs-gif.fr 2005-11-09 Nature 444, 171-8 Model organism 412030 18363 001904_GCAT 0 CAAL01000000 Complete Level 2: High-Quality Draft 13x 200000 40000 0 Sanger France Mesophile Eukaryota Chordata Mammalia Primates Hominidae Pan EUKARYAL Pan troglodytes Yerkes chimp pedigree #C0471 Yerkes chimp pedigree #C0471 Pan troglodytes Gc00604 Gi00424 Genome Complete and Published Public BCM-HGSC, Broad Institute, Washington Univ NIH-NHGRI Gibbs R ragibbs@bcm.tmc.edu http://genome.wustl.edu/Bio/email_data.cgi?staff=Wes%20Warren 2005-09-01 Nature 437, 69-87 9598 12552 002502_GCAT 0 NC_006468-92 Complete Level 2: High-Quality Draft 3.6x 3100000 48910 24 0 Sanger International captive-born descendant of chimpanzees from the West Africa captive-born descendant of chimpanzees from the West Africa Mesophile Eukaryota Streptophyta Liliopsida Poales Poaceae Oryza Oryza sativa EUKARYAL Oryza sativa ssp. japonica Oryza sativa Japonica Group Gc00603 Gi00421 Genome Complete and Published Public IRGSP, Genoscope, CUGI, J. Craig Venter Institute Sasaki T tsasaki@nias.affrc.go.jp 2005-08-11 Nature 436, 793-800 Agricultural 39947 13141 002272_GCAT 0 NC_008394-405 Complete Level 2: High-Quality Draft 10x 360785 37544 12 0 43 Sanger International Mesophile None Eukaryota Chordata Mammalia Didelphimorphia Didelphidae Monodelphis EUKARYAL Monodelphis domestica pop1 pop1 Gray short-tailed opossum Monodelphis domestica Gc00602 Gi00375 Genome Complete and Published Public Broad Institute, Washington Univ NIH-NHGRI Lindblad-Toh, K kersli@broad.mit.edu 2007-05-10 Nature 447, 167-77 13616 12561 002470_GCAT 0 AAFR00000000 Complete Level 2: High-Quality Draft 0 19022 9 0 0 Sanger USA Mesophile Eukaryota Ascomycota Sordariomycetes Magnaporthaceae Magnaporthe Magnaporthe grisea EUKARYAL Magnaporthe grisea 70-15 70-15 Magnaporthe grisea 70-15 Gc00601 Gi00342 Genome Complete and Published Public Broad Institute, North Carolina State Univ NSF, USDA Dean RA ralph_dean@ncsu.edu MGG 2005-04-21 Nature 434, 980-6 Agricultural, Plant Pathogen, Fungal Genome Initiative (FGI) 242507 13840 002041_GCAT 640281007 NZ_AACU00000000 Complete Level 2: High-Quality Draft 7x 37800 13146 7 0 51.7 Sanger USA Rice blast Pathogen Eukaryota Chordata Mammalia Primates Cercopithecidae Macaca EUKARYAL Macaca mulatta Rhesus monkey Macaca mulatta Gc00600 Gi00340 Genome Complete and Published Public BCM-HGSC, Washington Univ, J. Craig Venter Institute NCRR, NIH-NHGRI Gibbs R ragibbs@bcm.tmc.edu 2007-04-13 Science 316, 222-34 9544 12537 002485_GCAT 0 NC_007858-78 Complete Level 2: High-Quality Draft 6x 2871189 34023 22 0 40.7 Sanger USA Mesophile Eukaryota Chordata Aves Galliformes Phasianidae Gallus EUKARYAL Gallus gallus BN/SsNHsdMCW BN/SsNHsdMCW Chicken Gallus gallus Gc00599 Gi00267 Genome Complete and Published Public Sanger Institute, Roslin Institute, Washington Univ NIH-NHGRI Contact http://www.ri.bbsrc.ac.uk/chickmap/other_labs.html 2004-12-09 Nature 432, 695-716 9031 13342 002426_GCAT 0 NC_006088-119 Complete Level 2: High-Quality Draft 6.6x 1000000 15419 40 0 0 Sanger International Mesophile Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila Drosophila pseudoobscura EUKARYAL Drosophila pseudoobscura MV2-25 MV2-25 Drosophila pseudoobscura pseudoobscura MV2-25 Gc00598 Gi00206 Genome Complete and Published Public BCM-HGSC NIH-NHGRI Richards S stephenr@bcm.tmc.edu 2005-01-08 Genome Res. 15, 1-18 7237 10626 002351_GCAT 0 NZ_AADE00000000 Complete Level 2: High-Quality Draft 9.1x 147433 9946 4 0 45.2 Sanger USA Mesophile Eukaryota Chordata Mammalia Carnivora Canidae Canis Canis lupus EUKARYAL Canis lupus familiaris boxer boxer Dog Canis lupus familiaris Gc00597 Gi00132 Genome Complete and Published Public Univ of Oregon, Broad Institute, Fred Hutchinson Cancer Research Center, Agencourt Bioscience, Univ of California, Berkeley NIH-NHGRI Rine J Jasper_Rine@ls.berkeley.edu 2005-12-08 Nature 438, 803-19 Model organism 9615 13179 002440_GCAT 0 AAEX00000000, NC_006583-621 Complete Level 2: High-Quality Draft 7.6x 2400000 19300 39 0 0 Sanger USA Mesophile Eukaryota Arthropoda Insecta Lepidoptera Bombycidae Bombyx EUKARYAL Bombyx mori Dazao Dazao Bombyx mori Dazao Gc00596 Gi01144 Genome Complete and Published Public SWAU, China Xia Q xiaqy@swau.cq.cn 2004-12-10 Science 306, 1937-40 Protein production, Biotechnological 7091 13125 002340_GCAT 0 AADK00000000 Complete Level 2: High-Quality Draft 5.9x 530000 18510 28 0 0 Sanger China Mesophile None Eukaryota Arthropoda Insecta Diptera Culicidae Aedes EUKARYAL Aedes aegypti Liverpool Liverpool Aedes aegypti Liverpool Gc00595 Gi00015 Genome Complete and Published Public Colorado State Univ, Broad Institute, J. Craig Venter Institute NIH-NIAID Severson DW http://www.science.nd.edu/biology/faculty/severson.html 2007-06-22 Science 316, 1718-23 Animal Pathogen, Medical, Human Pathogen 7159 12434 002329_GCAT 0 AAGE00000000 Complete Level 2: High-Quality Draft 8x 1380000 0 3 0 38.3 Sanger USA Mesophile Yellow fever Pathogen Eukaryota Arthropoda Insecta Hymenoptera Apidae Apis EUKARYAL Apis mellifera DH4 DH4 Apis mellifera DH4 Gc00594 Gi00031 Genome Complete and Published Public BCM-HGSC USDA, NIH-NHGRI Weinstock G gweinsto@watson.wustl.edu 2006-11-01 Nature 443, 931-949 Medical, Agricultural 7460 10625 002334_GCAT 0 NC_007070-85 Complete Level 2: High-Quality Draft 7-8x 200000 6704 16 0 0 Sanger USA Mesophile None Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus Newman Newman Staphylococcus aureus subsp. aureus str. Newman Gc00593 Genome Complete and Published Public Juntendo Univ Baba, T tbaba@med.juntendo.ac.jp NWMN 2007-07-03 J Bacteriology 190, 300-10 Animal Pathogen, Medical, Human Pathogen 426430 18801 002835_GCAT 640753054 NC_009641 Complete 2878 2707 1 0 32 Sanger Japan Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Skin infection, Endocarditis, Pneumonia Host 30 - 37 Nonmotile Eukaryota Chlorophyta Prasinophyceae Mamiellales Ostreococcus Ostreococcus 'lucimarinus' EUKARYAL Ostreococcus lucimarinus CCE9901 - RCC141 CCE9901 - RCC141 Ostreococcus lucimarinus CCE9901 CCMP2514 Gc00592 Gi01106 Genome Complete and Published Public DOE Joint Genome Institute, UCSD DOE Palenik B bpalenik@ucsd.edu OSTLU 2007-05-03 PNAS 104, 7705-7710 436017 13044 002275_GCAT 640281011 NC_009355-73 Complete Level 2: High-Quality Draft 13204 7640 21 0 60.4 Sanger USA La Jolla, California USA La Jolla, California 32.9000 -117.2550 Mesophile Marine, Deep sea Low light adapted Archaea Euryarchaeota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus maripaludis ARCHAEAL Methanococcus maripaludis C7 C7 Methanococcus maripaludis C7 ATCC BAA-1331 Gc00591 Gi01308 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org MmarC7 2007-06-29 Unpublished Energy production, Biotechnological 426368 18819 001821_GCAT 39 640753035 NC_009637 Complete 10.7x 1772 1900 1 0 33.7 Sanger USA Intertidal sediments Intertidal sediments Obligate anaerobe Coccus-shaped Nonsporulating Mesophile 6.5 - 8 gram- Free living Singles None Marine, Sediment 20 - 45 Motile Methanogen, Nitrogen fixation, Hydrogenotrophic Lithotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Sinorhizobium Sinorhizobium medicae BACTERIAL Sinorhizobium medicae WSM419 WSM419 Sinorhizobium medicae WSM419 ATCC No Gc00590 Gi01041 Genome Complete and Published Public DOE Joint Genome Institute DOE Reeve WG W.Reeve@murdoch.edu.au Smed 2007-06-29 Unpublished Biotechnological 366394 16304 001593_GCAT 640753051 NC_009636 Complete Level 6: Finished 3Kb, 8Kb, 40Kb 92741 pUC18c, pTH1522, pMCL200, pcc1Fos Phrap 12x 3781 6644 1 3 62 Sanger USA Forestry Station 7 k south of Tempio, Sardinia Howieson and Chatel donut morphology on 0.5 LA, growth in 72 hrs, acid tolerant May 1, 1981 Italy Forestry Station 7 k south of Tempio, Sardinia 40.888925 9.101915 350m Medicago murex 75627 acid soil tolerant species Aerobe Rod-shaped Nonsporulating Mesophile 5-9 gram- Symbiotic Endosymbiotic intracellular Mutualistic Medicago murex 75627 None Soil, Plant root, Root nodule, Rhizosphere 28 Motile Nitrogen fixation Archaea Euryarchaeota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus aeolicus ARCHAEAL Methanococcus aeolicus Nankai-3 Nankai-3 Methanococcus aeolicus Nankai-3 Gc00589 Gi01899 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Maeo 2007-06-29 Unpublished Biotechnological, Energy production, Carbon cycle 419665 18641 001824_GCAT 640753034 NC_009635 Complete 12.7x 1569 1595 1 0 30 454, Sanger USA Deep marine sediment from the Nankai Trough off the coast of Japan Japan Deep marine sediment from the Nankai Trough off the coast of Japan 33.216667 136.71667 Anaerobe Coccus-shaped Nonsporulating Mesophile gram- Free living None Marine 42 Motile Methanogen Lithotroph Archaea Euryarchaeota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus vannielii ARCHAEAL Methanococcus vannielii SB SB Methanococcus vannielii SB Gc00588 Gi01309 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Mevan 2007-06-29 Unpublished Biotechnological, Energy production, Carbon cycle 406327 17889 001822_GCAT 213180 640753036 NC_009634 Complete 1720 1797 1 0 31 Sanger USA San Francisco Bay mud flat USA San Francisco Bay mud flat 37.690968 -122.310752 Anaerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Singles None Marine, Mud 20 - 40 Motile Methanogen Lithotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Alkaliphilus Alkaliphilus metalliredigens BACTERIAL Alkaliphilus metalliredigenes QYMF QYMF Alkaliphilus metalliredigens QYMF Gc00587 Gi00023 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Amet 2007-06-28 Unpublished Environmental, Bioremediation 293826 13006 000694_GCAT 58790 640753002 NC_009633 Complete 4400 5077 1 0 36.6 Sanger USA Borax leachate ponds Borax leachate ponds Anaerobe Rod-shaped Sporulating Mesophile Halophile gram+ Free living None Ponds Motile Metal reducer, Alkalophile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus JH1 VISA JH1 VISA Staphylococcus aureus subsp. aureus JH1 Gc00586 Gi00765 Genome Complete and Published Public DOE Joint Genome Institute, Rockefeller Univ DOE Bruce D microbes@cuba.jgi-psf.org SaurJH1 2007-06-28 PNAS 104, 9451-6 Animal Pathogen, Cattle Pathogen, Poultry Pathogen, Medical, Human Pathogen 359787 15758 001516_GCAT 247822 640753052 NC_009632 Complete 11x 2906 2980 1 1 32.9 Sanger USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Staphylococcal scarlet fever, Toxic-shock syndrome Host 30 - 37 Nonmotile Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium beijerinckii BACTERIAL Clostridium beijerinckii NCIMB 8052 NCIMB 8052 Clostridium beijerinckii NCIMB 8052 NCIMB 8052 Gc00585 Gi00156 Genome Complete and Published Public DOE Joint Genome Institute, Univ of Illinois DOE Bruce D microbes@cuba.jgi-psf.org Cbei 2007-06-27 Unpublished Biotechnological, Energy production, Solvent production 290402 12637 000966_GCAT 356694 640753016 NC_009617 Complete 6000 5364 1 0 29.9 Sanger USA Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Soil, Fresh water Motile Chemoorganotroph Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides vulgatus BACTERIAL Bacteroides vulgatus ATCC 8482 ATCC 8482 Bacteroides vulgatus ATCC 8482 ATCC 8482 Yes Gc00584 Gi00072 Genome Complete and Published Public Washington Univ NSF Gordon J jgordon@wustl.edu BVU 2007-06-27 PLoS Biology 5, E156 Animal Pathogen, Medical, Human Pathogen, Human Gut Microbiome Initiative (HGMI) 435590 13378 000771_GCAT 356684 640753008 NC_009614 Complete 5163 4189 1 0 42.2 Sanger USA Homo sapiens Gastrointestinal tract Intestinal tract Anaerobe Rod-shaped Mesophile gram- Free living Opportunistic peritoneal disease Intestinal microflora, Host Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Parabacteroides Parabacteroides distasonis BACTERIAL Parabacteroides distasonis ATCC 8503 ATCC 8503 Parabacteroides distasonis ATCC 8503 ATCC 8503 Yes Gc00583 Gi00067 Genome Complete and Published Public Washington Univ NSF Gordon J jgordon@wustl.edu BDI 2007-06-27 PLoS Biology 5, E156 Animal Pathogen, Medical, Human Pathogen, Human Gut Microbiome Initiative (HGMI) 435591 13485 000765_GCAT 252514 640753039 NC_009615 Complete 4811 3965 1 0 45.1 454, Sanger USA Intestinal tract Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Opportunistic peritoneal disease Intestinal microflora, Host Nonmotile Pathogen Bacteria Thermotogae Thermotogae (class) Thermotogales Thermotogaceae Thermosipho Thermosipho melanesiensis BACTERIAL Thermosipho melanesiensis BI429 BI429 Thermosipho melanesiensis BI429 CIP 104789, DSM 12029 Yes Gc00582 Gi01045 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Tmel 2007-06-26 Unpublished Evolutionary, Biotechnological 391009 17249 001610_GCAT 192511 640753057 NC_009616 Complete 10x 1915 2002 1 0 30 Sanger, 454 USA "Gills of the deep-sea vent hydrothermal mussel Bathymodiolus brevior from the Lau Basin at Southwestern Pacific Ocean, between 1832 and 1887 metres (latitude, 22o329S; longitude, 176o439W)" Lau Basin at Southwestern Pacific Ocean, between 1832 and 1887 meters -22.058056 -176.0775 1832 - 1887 meters Bathymodiolus brevior Anaerobe Rod-shaped Thermophile 6.5 gram- Free living None Hydrothermal vent, Marine 70 Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium psychrophilum BACTERIAL Flavobacterium psychrophilum JIP02/86 JIP02/86 Flavobacterium psychrophilum JIP02/86 ATCC 49511 No Gc00581 Genome Complete and Published Public INRA FP 2007-06-25 Nature Biotechnol 25, 763-9 Medical, Fish Pathogen 402612 19979 002803_GCAT 640753027 NC_009613 Complete 2861 2505 1 0 32.5 Sanger France Aerobe Rod-shaped Nonsporulating Psychrophile gram- Free living Bacterial cold water, Rainbow trout fry syndrome Host, Fresh water Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi PittGG PittGG Haemophilus influenzae PittGG Gc00580 Gi01494 Genome Complete and Published Public Allegheny-Singer Research Institute CGSHiGG 2007-06-07 Unpublished Medical, Human Pathogen 374931 16401 001117_GCAT 640427117 NC_009567 Complete 1887 1793 1 0 37.9 Sanger USA External ear discharge of a spontaneously perforated tympanic membrane of a child in Pittsburgh USA External ear discharge of a spontaneously perforated tympanic membrane of a child in Pittsburgh 40.438423 80.001933 Facultative Rod-shaped Mesophile gram- Free living Chronic bronchitis, Septicemia, Otitis media, Meningitis, Sinusitis Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi PittEE PittEE Haemophilus influenzae PittEE Gc00579 Gi01493 Genome Complete and Published Public Allegheny-Singer Research Institute CGSHiEE 2007-06-07 Unpublished Medical, Human Pathogen 374930 16400 001116_GCAT 640427116 NC_009566 Complete 1813 1750 1 0 37.9 Sanger USA Middle-ear effusion of a child in Pittsburgh USA Middle-ear effusion of a child in Pittsburgh 40.438423 -80.001933 Homo sapiens Facultative Rod-shaped Mesophile gram- Free living Chronic bronchitis, Otitis media, Meningitis, Septicemia, Sinusitis Host Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis F11 (ExPEC) F11 (ExPEC) Mycobacterium tuberculosis F11 Gc00578 Gi01175 Genome Complete and Published Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu TBFG 2007-06-07 Unpublished Medical, Human Pathogen 336982 15642 001227_GCAT 234320 640427123 CM000286, NC_009565 Complete 22.27x 4424 4050 1 0 65.6 Sanger USA Tuberculosis patients during a TB epidemic in the Western Cape of South Africa South Africa Tuberculosis patients during a TB epidemic in the Western Cape of South Africa Homo sapiens Patient with tuberculosis Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host 37 Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis H37Ra H37Ra Mycobacterium tuberculosis H37Ra ATCC 25177 Gc00577 Gi01895 Genome Complete and Published Public Beijing Genomics Institute Zhang Y yzhang@jhsph.edu MRA 2007-06-01 PLoS ONE 3, e2375 Medical, Human Pathogen 419947 18883 001235_GCAT 103703 231446 640427124 NC_009525 Complete 4419 4132 1 0 65.6 China Original human-lung H37 isolate in 1934 1934 Original human-lung H37 isolate in 1934 Homo sapiens Airways Lung Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host 37 Nonmotile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Psychrobacter Psychrobacter sp. PRwf-1 BACTERIAL Psychrobacter sp. PRwf-1 PRwf-1 Psychrobacter sp. PRwf-1 Gc00576 Gi01521 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org PsycPRwf 2007-06-04 Unpublished Biotechnological, Astrobiological 349106 15759 001394_GCAT 229175 640427134 NC_009524 Complete 15x 2978 2549 1 2 44 Sanger USA Aerobe Rod-shaped Psychrophile gram- Free living None Soil, Marine, Permafrost sediment Nonmotile Radiation resistant Bacteria Chloroflexi Chloroflexi (class) Chloroflexales Chloroflexaceae Roseiflexus Roseiflexus sp. RS-1 BACTERIAL Roseiflexus sp RS-1 RS-1 Roseiflexus sp. RS-1 Gc00575 Gi00963 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org RoseRS 2007-06-04 Unpublished Biotechnological 357808 16190 001430_GCAT 161690 640427139 NC_009523 Complete 11x 5801 4728 1 0 60.4 Sanger USA Hot spring microbial mat Hot spring microbial mat Facultative Rod-shaped Nonsporulating Thermophile gram- Free living None Hot spring, Marine Motile Photosynthetic, Photoautotroph Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii ARCHAEAL Methanobrevibacter smithii PS PS Methanobrevibacter smithii ATCC 35061 DSM 861, ATCC 35061 Yes Gc00574 Gi01898 Genome Complete and Published Public Washington Univ Gordon J jgordon@wustl.edu Msm 2007-06-04 PNAS 104, 10643-8 Medical, Human Gut Microbiome Initiative (HGMI) 420247 18653 001792_GCAT 157022 98872 640427121 NC_009515 Complete 11.6x 1853 1880 1 0 31 Sanger USA Sewage digester in Gainesville Florida USA Gainesville Florida "2,965,207" "-82,339,342" Anaerobe Rod-shaped Mesophile gram+ Free living Chains, Pairs None Human intestinal microflora, Soil, Host 37 - 40 Nonmotile Symbiotic, Methanogen Lithotroph Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus reuteri BACTERIAL Lactobacillus reuteri F275, JCM 1112 F275, JCM 1112 Lactobacillus reuteri DSM 20016 JCM 1112, DSM 20016 Yes Gc00573 Gi00790 Genome Complete and Published Public DOE Joint Genome Institute, Univ of Otago DOE Tannock G gerald.tannock@stonebow.otago.ac.nz Lreu 2007-05-31 Unpublished Food industry, Biotechnological 299033 15766 001153_GCAT 38415 262739 640427118 NC_009513 Complete 1999 2027 1 0 38.9 Sanger, 454 USA Human feces Human isolate that is unable to colonize the intestinal tract of mice Human isolate that is unable to colonize the intestinal tract of mice Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Mesophile gram+ Free living Chains None Birds intestinal microflora, Mammalian intestinal microflora, Host, Human intestinal microflora Nonmotile Non-Pathogen, Probiotic Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida BACTERIAL Pseudomonas putida F1 F1 Pseudomonas putida F1 ATCC 700007 No Gc00572 Gi00953 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Pput 2007-05-31 Unpublished Environmental, Bioremediation 351746 13909 001392_GCAT 268202 640427132 NC_009512 Complete 11x 5959 5494 1 0 61.9 Sanger USA Polluted creek in Urbana IL USA Polluted creek in Urbana IL 40.106649 -88.195627 Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Soil Motile Non-Pathogen Heterotroph Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas wittichii BACTERIAL Sphingomonas wittichii RW1 RW1 Sphingomonas wittichii RW1 JCM 10273, EY 4224, DSM 6014 Yes Gc00571 Gi01358 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Swit 2007-05-31 Unpublished Bioremediation, Environmental, Dioxin-mineralizing 392499 17343 001775_GCAT 144023 230649 640427144 NC_009511 Complete 11x 5382 5509 1 2 67 Sanger USA Elbe River in Germany Germany Elbe River in Germany Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Fresh water Motile Heterotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella ovis BACTERIAL Brucella melitensis bv ovis ATCC25840 ATCC25840 Brucella ovis ATCC 25840 ATCC 25840 Gc00570 Gi00101 Genome Complete and Published Public J. Craig Venter Institute Paulsen I http://www.bio.jhu.edu/Directory/Faculty/Paulsen/Default.html BOV 2007-05-31 Unpublished Animal Pathogen, Sheep Pathogen, Medical, Biothreat 444178 12514 000792_GCAT 104622 229012 640427105 NC_009504, NC_009505 Complete 3275 3238 2 0 57.2 USA tissue, animal(sheep) Sheep Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Genital infection, Brucellosis Macrophage, Host 37 Nonmotile Intracellular pathogen, Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma agalactiae BACTERIAL Mycoplasma agalactiae PG2 PG2 Mycoplasma agalactiae PG2 NCTC 10123 Yes Gc00569 Gi01077 Genome Complete and Published Public Genoscope Barbe V vbarbe@genoscope.cns.fr MAG 2007-05-23 Unpublished Medical, Animal Pathogen 347257 16095 001237_GCAT 369021 70874 640427125 NC_009497 Complete 877 831 1 0 29.7 France Facultative Sphere-shaped Nonsporulating Mesophile gram+ Free living Singles Pneumonia, Arthritis, Mycoplasmosis, Mastitis Host Nonmotile Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum type A - Hall type A - Hall Clostridium botulinum A str. ATCC 3502 ATCC 3502 Gc00568 Gi00157 Genome Complete and Published Public Sanger Institute, Institute of Food Research, Univ of Reading Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ CBO 2007-05-23 Genome Res 17, 1082-92 Biothreat, Medical, Human Pathogen 413999 193 000968_GCAT 719454 640427109 NC_009495 Complete 3886 3802 1 1 28 United Kingdom Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Botulism Soil 35 - 40 Motile Pathogen, Type A toxin producer Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila BACTERIAL Legionella pneumophila Corby Corby Legionella pneumophila str. Corby Gc00567 Gi00827 Genome Complete and Published Public IMB, Jena Gloeckner G gernot@imb-jena.de LPC 2007-05-24 Unpublished Medical, Human Pathogen 400673 17491 001161_GCAT 227923 640427119 NC_009494 Complete 3576 3312 1 0 38.5 Germany Human isolate Human isolate Homo sapiens Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Legionnaire's disease Fresh water, Fresh water, Soil, Host, Biofilm Motile Pathogen Chemoorganotroph Bacteria Cyanobacteria Chroococcales Synechococcus BACTERIAL Prochlorococcus sp. WH 7803 WH 7803 Synechococcus sp. WH 7803 CSIRO CS-197, CCMP 1334 Gc00566 Gi00250 Genome Complete and Published Public International Collaboration, Genoscope European Union Wincker P pwincker@genoscope.cns.fr 2007-05-19 Unpublished Biotechnological, Ocean carbon cycle, Environmental 32051 13642 001586_GCAT 527166 231101 640427149 NC_009481 Complete 2366 2592 1 0 60.2 European Consortium Sargasso Sea, North Atlantic Isolated by Waterbury,J 1980 Sargasso Sea 33.7423 -67.4913 25 meters Mesophile 1 um 1 -3 um gram- Free living None Marine Motile Photosynthetic, Photoautotroph Bacteria Cyanobacteria Chroococcales Synechococcus BACTERIAL Synechococcus sp. RCC307 RCC307 Synechococcus sp. RCC307 RCC307 Gc00565 Gi00783 Genome Complete and Published Public International Collaboration, Genoscope European Union Wincker P pwincker@genoscope.cns.fr 2007-05-19 Unpublished Biotechnological, Ocean carbon cycle, Environmental 316278 13654 001585_GCAT 231184 640427148 NC_009482 Complete 2224 2586 1 0 60.2 European Consortium Seawater taken at a depth of 15 meters from the Mediterranean Sea Seawater taken at a depth of 15 meters from the Mediterranean Sea 39.166667 6.166667 15 meters Facultative Coccus-shaped Mesophile 1 um gram- Free living None Marine Motile Photosynthetic, Photoautotroph Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus JH9 VISA JH9 VISA Staphylococcus aureus subsp. aureus JH9 Gc00564 Gi01035 Genome Complete and Published Public DOE Joint Genome Institute, Rockefeller Univ DOE Tomasz A tomasz@rockefeller.edu SaurJH9 2007-05-18 PNAS 104, 9451-9456 Animal Pathogen, Cattle Pathogen, Poultry Pathogen, Medical, Human Pathogen 359786 15757 001517_GCAT 234645 640427145 NC_009487 Complete 11x 2906 2918 1 1 32.9 Sanger USA Patient undergoing vancomycin treatment Patient undergoing vancomycin treatment Homo sapiens Patient undergoing vancomycin treatment Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Toxic-shock syndrome, Staphylococcal scarlet fever Host 30 - 37 Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Microbacteriaceae Clavibacter Clavibacter michiganensis BACTERIAL Clavibacter michiganensis michiganensis NCPPB 382 NCPPB 382 Clavibacter michiganensis subsp. michiganensis NCPPB 382 NCPPB382 Gc00563 Gi00154 Genome Complete and Published Public Bielefeld Univ BMBF Puhler A puehler@genetik.uni-bielefeld.de 2007-05-18 J Bacteriology 190, 2138-49 Plant Pathogen, Agricultural 443906 19643 000964_GCAT 7256 640427108 NC_009480 Complete 1 Kb, 2-3 Kb, 8 Kb Phrap GenDB 2.0 3297 3169 1 2 72.7 Sanger Germany Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Pairs, Singles Tuber rot, Wilting disease, Ring rot Host Nonmotile Pathogen Bacteria Thermotogae Thermotogae (class) Thermotogales Thermotogaceae Thermotoga Thermotoga petrophila BACTERIAL Thermotoga petrophila RKU-1 RKU-1 Thermotoga petrophila RKU-1 ATCC BAA-488, JCM 10881, DSM 13995 Yes Gc00562 Gi01043 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Tpet 2007-05-18 Unpublished Evolutionary, Biotechnological 390874 17089 001608_GCAT 163898 640427150 NC_009486 Complete 11x 1823 1911 1 0 46 Sanger USA Production waters of the Kubiki oil reservoir in Niigata Japan June 1997 Japan Production waters of the Kubiki oil reservoir in Niigata Japan 37.916192 139.036413 Anaerobe Rod-shaped Nonsporulating Hyperthermophile gram- Free living None Oil fields, Fresh water 80 Motile Heterotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bradyrhizobiaceae Bradyrhizobium Bradyrhizobium sp. BTAi1 BACTERIAL Bradyrhizobium sp BTAi1 BTAi1 Bradyrhizobium sp. BTAi1 Gc00561 Gi00922 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org BBta 2007-05-11 Science 316, 1307-12 Agricultural 288000 16137 000788_GCAT 234467 640427103 NC_009485 Complete 10x 8264 7819 1 1 64 Sanger USA Stem nodules of Aeschynomene indica Stem nodules of Aeschynomene indica Aerobe Rod-shaped Mesophile gram- Symbiotic Mutualistic Aeschynomene indica None Soil Motile Stores polyhydroxybutyrate, Carbon sequestration, Nitrogen fixation Photosynthetic Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Geobacteraceae Geobacter Geobacter uraniireducens BACTERIAL Geobacter uraniumreducens RF4 RF4 Geobacter uraniireducens Rf4 JCM 13001, ATCC BAA-1134 Yes Gc00560 Gi01251 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Gura 2007-05-11 Unpublished Environmental, Bioremediation 351605 15768 001106_GCAT 640427115 NC_009483 Complete 13x 5136 4543 1 0 54 Sanger USA Uranium bioremediation study site in Rifle Colorado December, 2002 USA Uranium bioremediation study site in Rifle Colorado 39.538845 -107.783363 Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Sediment, Soil Motile Iron reducer, Uranium reducer Chemolithotroph Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Acidiphilium Acidiphilium cryptum BACTERIAL Acidiphilium cryptum JF-5 JF-5 Acidiphilium cryptum JF-5 Gc00559 Gi00918 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Acry 2007-05-11 Unpublished Bioremediation, Environmental, Biotechnological 349163 15753 000611_GCAT 233394 640427101 NC_009484 Complete 9x 3389 3746 1 8 67 Sanger USA Coal mine lake sediment Coal mine lake sediment Aerobe Rod-shaped Mesophile gram- Free living None Fresh water, Hydrothermal vent, Acid mine drainage 35 Motile Acidophile, Iron reducer Heterotroph Bacteria Chloroflexi Dehalococcoidetes Dehalococcoides Dehalococcoides sp. BAV1 BACTERIAL Dehalococcoides sp BAV1 BAV1 Dehalococcoides sp. BAV1 Gc00558 Gi00937 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org DehaBAV1 2007-05-07 Unpublished Bioremediation, Environmental, Ecological, Biotechnological 216389 15770 000991_GCAT 76593 640427111 NC_009455 Complete 13x 1341 1483 1 0 47 Sanger USA environment in Michigan that could dechlorinate polychlorinated ethenes USA environment in Michigan that could dechlorinate polychlorinated ethenes Anaerobe Nonsporulating Mesophile gram- Free living None Groundwater, Fresh water Motile Dechlorinates Tetrachloroethene Chemolithotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae O395 O395 O1 Vibrio cholerae O395 Gc00557 Gi01151 Genome Complete and Published Public J. Craig Venter Institute VC 2007-05-08 Unpublished Medical, Human Pathogen 345073 15667 001685_GCAT 223193 640427151 NC_009456, NC_009457 Complete 4148 4118 2 0 47 USA 6th pandemic strain 6th pandemic strain Homo sapiens Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Cholera, Food poisoning Fresh water 20 - 30 Motile Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Pelotomaculum Pelotomaculum thermopropionicum BACTERIAL Pelotomaculum thermopropionicum SI SI Pelotomaculum thermopropionicum SI DSM 13744 Yes Gc00556 Gi01927 Genome Complete and Published Public Marine Biotechnology Institute Watanabe K kazuya.watanabe@mbio.jp PTH 2007-05-08 Unpublished Biotechnological 370438 19023 002551_GCAT 303408 335682 640427128 NC_009454 Complete 3025 2983 1 0 52.8 Japan Thermophilic upflow anaerobic sludge blanket reactor Thermophilic upflow anaerobic sludge blanket reactor Anaerobe Sporulating Thermophile 7 gram+ "Syntrophic," None Sludge 55 Propionate-oxidizing Bacteria Proteobacteria Gammaproteobacteria Calyptogena okutanii thioautotrophic gill symbiont BACTERIAL Candidatus Vesicomyosocius okutanii HA HA Candidatus Vesicomyosocius okutanii HA Gc00555 Genome Complete and Published Public JAMSTEC Maruyama T tadashim@jamstec.go.jp COSY 2007-05-22 Current Biology 17, 881-886 Evolutionary 412965 18267 002614_GCAT 640427107 NC_009465 Complete 1022 1016 1 0 31.6 Japan Hatsushima island in Sagami Bay in Japan Japan Hatsushima island in Sagami Bay in Japan 35.2 139.5 Mesophile gram- Calyptogena okutanii None Host Sulfur oxidizer Chemoautotroph Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Orientia Orientia tsutsugamushi BACTERIAL Orientia tsutsugamushi Boryong Boryong Orientia tsutsugamushi str. Boryong Gc00554 Genome Complete and Published Public Seoul National Univ MOHW Kim I-S molecule@plaza.snu.ac.kr OTBS 2007-05-08 PNAS 104, 7981-6 Medical, Animal Pathogen 357244 16180 002613_GCAT 640427127 NC_009488 Complete 2127 2215 1 0 30.5 Korea Korean patient in Boryong in 1995 1995 Korea Korean patient in Boryong in 1995 37.538777 127.665269 Homo sapiens Patient Aerobe Rod-shaped Mesophile gram- Free living Scrub typhus Host Motile Intracellular, Pathogen Bacteria Proteobacteria Gammaproteobacteria Cardiobacteriales Cardiobacteriaceae Dichelobacter Dichelobacter nodosus BACTERIAL Dichelobacter nodosus VCS1703A VCS1703A Dichelobacter nodosus VCS1703A Gc00553 Gi00198 Genome Complete and Published Public Univ or Arizona, J. Craig Venter Institute USDA Paulsen I http://www.bio.jhu.edu/Directory/Faculty/Paulsen/Default.html DNO 2007-05-04 Nat. Biotechnol 25, 569-75 Medical, Animal Pathogen 246195 50 001003_GCAT 225045 640427112 NC_009446 Complete 1389 1395 1 0 44.4 USA Anaerobe Rod-shaped Mesophile gram- Free living Ovine footrot Host 37 Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bradyrhizobiaceae Bradyrhizobium Bradyrhizobium sp. ORS278 BACTERIAL Bradyrhizobium sp ORS278 ORS278 Bradyrhizobium sp. ORS278 Gc00552 Gi00923 Genome Complete and Published Public Genoscope BRADO 2007-05-01 Science 316, 1307-12 Agricultural 114615 19575 000789_GCAT 299985 219364 640427104 NC_009445 Complete 7456 6824 1 0 65.5 France Stem nodule of Aeschynomene sensitiva in Senegal in 1991 1991 Senegal Stem nodule of Aeschynomene sensitiva in Senegal in 1991 Aerobe Rod-shaped Mesophile gram- Symbiotic Mutualistic Aeschynomene None Soil, Host Motile Nitrogen fixation, Stores polyhydroxybutyrate Photosynthetic Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Rhodobacter Rhodobacter sphaeroides BACTERIAL Rhodobacter sphaeroides ATCC 17025 ATCC 17025 Rhodobacter sphaeroides ATCC 17025 ATCC 17025 Gc00551 Gi01029 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Rsph17025 2007-05-08 Unpublished Bioremediation, Environmental, Energy production, Biotechnological 349102 15755 001412_GCAT 99107 222847 640427138 NC_009428 Complete 10x 3217 4531 1 5 68.5 Sanger USA Facultative Rod-shaped Mesophile gram- Free living Chains None 25 - 35 Motile Photosynthetic Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium johnsoniae BACTERIAL Flavobacterium johnsoniae UW101 UW101 Flavobacterium johnsoniae UW101 ATCC 17061 Yes Gc00550 Gi00942 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Fjoh 2007-05-01 Unpublished Medical, Fish Pathogen, Biotechnological, Biomass conversion 376686 16082 001056_GCAT 8766 226144 640427114 NC_009441 Complete 11x 6096 5202 1 0 34 Sanger USA Soil in England Soil in England Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Skin lesions Soil, Fresh water 20 - 30 Motile Chitin degradation Eukaryota Kinetoplastida Trypanosomatidae Leishmania Leishmania infantum EUKARYAL Leishmania infantum JPCM5 (MCAN/ES/98/LLM-877) JPCM5 (MCAN/ES/98/LLM-877) Leishmania infantum JPCM5 Gc00549 Gi00324 Genome Complete and Published Public Sanger Institute, Imperial College, Glasgow Univ Wellcome Trust Peacock C csp@sanger.ac.uk 2007-04-30 Unpublished Human Pathogen, Medical 435258 12658 001881_GCAT 0 NC_009386-420 Complete 5x 31760 7993 36 0 0 Sanger United Kingdom Mesophile Leishmaniasis Host Parasite, Pathogen Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Metallosphaera Metallosphaera sedula ARCHAEAL Metallosphaera sedula DSM 5348 DSM 5348 Metallosphaera sedula DSM 5348 ATCC 51363, DSM 5348 Yes Gc00548 Gi01305 Genome Complete and Published Public DOE Joint Genome Institute DOE Blum P pblum1@unlnotes.unl.edu Msed 2007-04-25 Appl Environ Microbiology 74, 682-92 Biotechnological, Bioremediation 399549 17447 001818_GCAT 115548 226044 640427120 NC_009440 Complete 2191 2388 1 0 46.3 USA Thermal pond in the Pisciarelli Solfatara in Italy Italy Thermal pond in the Pisciarelli Solfatara in Italy "40,829,436" "14,130,491" Aerobe Coccus-shaped Nonsporulating Thermophile 2 gram- Free living None 70 Nonmotile Thermoacidophile, Iron oxidizer, Metal-mobilizing Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis BACTERIAL Streptococcus suis 98HAH33 98HAH33 Streptococcus suis 98HAH33 Gc00547 Gi01544 Genome Complete and Published Public Beijing Institute of Genomics Yu J tjq85@hotmail.com SSU98 2007-04-24 PLoS ONE 2, E315 Animal Pathogen, Swine Pathogen, Medical, Human Pathogen 391296 17155 001568_GCAT 640427147 NC_009443 Complete 2095 2325 1 0 41.1 China Chinese virulent strain isolated from fatal cases of STSS in 1998 1998 China Chinese virulent strain isolated from fatal cases of STSS in 1998 Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Septicemia, Arthritis, Endocarditis, Meningitis Host 37 Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis BACTERIAL Streptococcus suis 05ZYH33 05ZYH33 Streptococcus suis 05ZYH33 Gc00546 Gi01543 Genome Complete and Published Public Beijing Institute of Genomics Yu J tjq85@hotmail.com SSU05 2007-04-24 PLoS ONE 2, E315 Animal Pathogen, Swine Pathogen, Medical, Human Pathogen 391295 17153 001567_GCAT 640427146 NC_009442 Complete 2096 2322 1 0 41.1 China Chinese virulent strain isolated from fatal cases of STSS in 2005 2005 China Chinese virulent strain isolated from fatal cases of STSS in 2005 Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Septicemia, Arthritis, Endocarditis, Meningitis Host 37 Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella putrefaciens BACTERIAL Shewanella putrefaciens CN-32 CN-32 Shewanella putrefaciens CN-32 ATCC BAA-453, ATCC BAA-1097 No Gc00545 Gi00555 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Sputcn32 2007-04-20 Unpublished Biotechnological 319224 13393 001496_GCAT 493665 640427141 NC_009438 Complete 3498 4260 1 0 44.4 Sanger, 454 USA "Subsurface; shale sandstone; 250 m depth from Albuquerque, New Mexico" 1994 USA Albuquerque, New Mexico 35.080371 -106.627085 250 meters Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Soil, Fresh water Motile Iron reducer, Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas mendocina BACTERIAL Pseudomonas mendocina ymp ymp Pseudomonas mendocina ymp Gc00544 Gi01348 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Pmen 2007-04-20 Unpublished Alginate synthesis, Bioremediation, Medical, Environmental, Human Pathogen, Biotechnological 399739 17457 001765_GCAT 223278 640427131 NC_009439 Complete 14.4x 5072 4782 1 0 64.7 Sanger USA Argentina Argentina Blood Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Endocarditis, Spondylodiscitis Blood, Soil, Fresh water, Host Motile PCP-degrading, Pathogen Heterotroph Bacteria Firmicutes Clostridia Thermoanaerobacterales Thermoanaerobacterales Family III. Incertae Sedis Caldicellulosiruptor Caldicellulosiruptor saccharolyticus BACTERIAL Caldicellulosiruptor saccharolyticus DSM 8903 DSM 8903 Caldicellulosiruptor saccharolyticus DSM 8903 ATCC 43494, DSM 8903 Yes Gc00543 Gi00929 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Csac 2007-04-19 Appl Environ Microbiology 74, 6720-9 Bioenergy, Energy production, Biotechnological 351627 13466 000818_GCAT 99107 144686 640427106 NC_009437 Complete 3Kb, 8Kb, 40Kb 10x Critica, Glimmer 2970 2873 1 0 35.3 Sanger USA Hot spring in New Zealand New Zealand 8076802 Hot spring in New Zealand Anaerobe Rod-shaped Nonsporulating Thermophile 7.0 gram- Free living Pairs, Singles None Hot spring 79 Nitrogen producer, Biomass degrader, Cellulose degrader Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Enterobacter Enterobacter sp. 638 BACTERIAL Enterobacter sp 638 638 Enterobacter sp. 638 Gc00542 Gi01336 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Ent638 2007-04-18 Unpublished Agricultural 399742 17461 001748_GCAT 174884 640427113 NC_009436 Complete 4518 4488 1 1 52.8 USA Populus trichocarpa x deltoides Populus trichocarpa x deltoides Facultative Rod-shaped Mesophile gram- Free living Populus trichocarpa x deltoides None Host, Endophyte Motile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas stutzeri BACTERIAL Pseudomonas stutzeri A1501 A1501 Pseudomonas stutzeri A1501 CGMCC 0351 Gc00541 Gi01534 Genome Complete and Published Public Chinese Academy of Agricultural Sciences PST 2007-04-23 PNAS 105, 7564-9 Agricultural, Environmental, Bioremediation 379731 16817 001393_GCAT 8477 640427133 NC_009434 Complete 4567 4219 1 0 63.9 China Rice roots that had been inoculated with strain A15 in a rice paddy in China China Rice roots that had been inoculated with strain A15 in a rice paddy in China Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Host, Rice roots, Soil Motile Denitrifying, Non-Pathogen Heterotroph Archaea Crenarchaeota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum arsenaticum ARCHAEAL Pyrobaculum arsenaticum PZ6 PZ6 Pyrobaculum arsenaticum DSM 13514 DSM 13514, ATCC 700994 Yes Gc00540 Gi01056 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Pars 2007-04-20 Unpublished Biotechnological 340102 15582 001812_GCAT 163713 20435 640427135 NC_009376 Complete 11x 2121 2455 1 0 58.3 Sanger USA Hot spring at Pisciarelli Solfatara Naples Italy Italy Hot spring at Pisciarelli Solfatara Naples Italy "40,829,436" "14,130,491" Anaerobe Rod-shaped Nonsporulating Hyperthermophile gram- Free living None Fresh water, Hot spring 95 Motile Organotroph, Chemolithotroph, Autotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micromonosporaceae Salinispora Salinispora tropica BACTERIAL Salinispora tropica CNB-440 CNB-440 Salinispora tropica CNB-440 CIP 108943, ATCC BAA-916, JCM 13857, DSM 44818 Yes Gc00539 Gi01034 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Strop 2007-04-17 PNAS 104, 10376-81 Biotechnological, Medical, Cancer treatment 369723 16342 001442_GCAT 621777 172932 640427140 NC_009380 Complete 13x 5183 4706 1 0 69 Sanger USA Coarse beach sand off the Bahamas Bahamas Coarse beach sand off the Bahamas Aerobe Filament-shaped Sporulating Mesophile gram+ Free living None Marine 28 Nonmotile Salinosporamide producer Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Pestoides F Pestoides F Yersinia pestis Pestoides F Gc00538 Gi01525 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org YPDSF 2007-04-13 Unpublished Animal Pathogen, Medical, Human Pathogen, Biothreat 386656 16700 001726_GCAT 218141 640427152 NC_009381 Complete 4517 4359 1 2 47.6 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic and Pneumonic plague Host Motile Pathogen Heterotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Polynucleobacter sp. QLW-P1DMWA-1 BACTERIAL Polynucleobacter sp QLW-P1DMWA-1 QLW-P1DMWA-1 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 Gc00537 Gi01032 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Pnuc 2007-04-12 Unpublished Ecological, Biotechnological 312153 16679 001415_GCAT 182979 640427129 NC_009379 Complete 12x 2159 2173 1 0 46 Sanger USA Aerobe Rod-shaped Mesophile gram- Free living None Fresh water, Host Nonmotile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas salmonicida BACTERIAL Aeromonas salmonicida salmonicida A449 A449 Aeromonas salmonicida subsp. salmonicida A449 Gc00536 Gi00019 Genome Complete and Published Public NRC-IMB NRC Reith M michael.reith@nrc-cnrc.gc.ca http://www.imb.nrc.ca/cgi-bin/wwwaero.pl?page=staff&name=Mike+Reith ASA 2007-04-06 BMC Genomics 9:427 Fish Pathogen, Medical, Human Pathogen 382245 16723 000687_GCAT 222798 641522605 NC_009348 Complete pUC19, pBACe3.6 Glimmer2 4702 4615 1 5 58.5 Canada brown trout in the Eure river, France by Christian Michel in 1975 1975 France brown trout in the Eure river, France Salmo trutta 8032 Diseased with furunculosis Facultative Rod-shaped Psychrophile gram- Free living Furunculosis Fresh water, Fresh water Motile Pathogen Heterotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium glutamicum BACTERIAL Corynebacterium glutamicum R R Corynebacterium glutamicum R Gc00535 Genome Complete and Published Public RITE Inui M mmg-lab@rite.or.jp cgR 2007-04-05 Microbiology 153, 1042-58 Amino acids production, Glutamate production, Food industry, Biotechnological 340322 19193 002586_GCAT 137492 640427110 NC_009342 Complete 3300 3174 1 1 54.1 Japan Meadow soil in Japan Japan Meadow soil in Japan Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles None Normal microflora, Soil 30 - 40 Nonmotile Fast growing Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium gilvum BACTERIAL Mycobacterium flavenscens PYR-GCK PYR-GCK Mycobacterium gilvum PYR-GCK ATCC 700033 Gc00534 Gi01020 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Mflv 2007-04-12 Unpublished Biotechnological 350054 15760 001221_GCAT 581072 224220 640427122 NC_009338 Complete 12x 5619 5723 1 3 67 Sanger USA River sediment River sediment Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles None Soil Nonmotile PAH-degrading Chemoorganotroph Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeovibrioides BACTERIAL Chlorobium phaeovibrioides DSM 265 DSM 265 Chlorobium phaeovibrioides DSM 265 DSM 265 No Gc00533 Gi00148 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Cvib 2007-04-12 Unpublished Biotechnological, Hydrogen production, Energy production 290318 12607 000953_GCAT 156547 131048 640427130 NC_009337 Complete 1966 1870 1 0 53 USA Facultative Rod-shaped Nonsporulating Mesophile 0.5 - 0.7 um 1 - 2 um gram- Free living Chains, Singles None Fresh water Nonmotile Green sulfur, Nitrogen fixation Photosynthetic Bacteria Firmicutes Bacilli Bacillales Bacillaceae Geobacillus Geobacillus thermodenitrificans BACTERIAL Geobacillus thermodenitrificans NG80-2 NG80-2 Geobacillus thermodenitrificans NG80-2 Gc00532 Gi01891 Genome Complete and Published Public Nankai Univ Wang, L wanglei@nankai.edu.cn GTNG 2007-03-29 PNAS 104, 5602-7 Environmental, Biotechnological 420246 18655 001105_GCAT 162671 640069312 NC_009328 Complete PHRED_PHRAP_CONSED 9.1x Critica, Glimmer 3607 3705 1 1 49 Sanger China Oil reservoir formation water taken at a depth of 2000 m Oil reservoir formation water taken at a depth of 2000 m Facultative Rod-shaped Sporulating Thermophile gram+ Free living None Fresh water, Oil fields 65 Motile Degrades long-chain alkanes, Hydrocarbon degrading Chemoorganotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia vietnamiensis BACTERIAL Burkholderia vietnamiensis G4 (R1808) G4 (R1808) Burkholderia vietnamiensis G4 ATCC 53617 Gc00531 Gi00105 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bcep1808 2007-03-27 Unpublished Agricultural, Plant Pathogen, Biotechnological 269482 10696 000797_GCAT 62273 207860 640069307 NC_009255, NC_009254, NC_009256 Complete 7430 7948 3 5 67 USA wastewater, Pensacola, FL USA 30.473413 -87.212261 Facultative Rod-shaped Mesophile gram- Free living Wastewater Motile Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Desulfotomaculum Desulfotomaculum reducens BACTERIAL Desulfotomaculum reducens MI-1 MI-1 Desulfotomaculum reducens MI-1 Gc00530 Gi00939 Genome Complete and Published Public DOE Joint Genome Institute DOE Rizlan Bernier-Latmani rizlan.bernier-latmani@epfl.ch Dred 2007-03-24 Unpublished Environmental, Bioremediation 349161 13424 000999_GCAT 640069310 NC_009253 Complete 11x 3608 3452 1 0 42 Sanger USA Heavy metal-contaminated sediment collected at the Mare Island Naval Shipyard on the San Francisco Bay USA Mare Island Naval Shipyard on the San Francisco Bay 38.067222 -122.25 Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living None Fresh water 37 Motile Uranium reducer, Chromium reducer, Metal reducer, Sulfate reducer Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis tularensis A.II, Wyoming, WY96-3418 A.II, Wyoming, WY96-3418 Francisella tularensis subsp. tularensis WY96-3418 Gc00529 Gi01517 Genome Complete and Published Public Los Alamos National Laboratory, DOE Joint Genome Institute Brettin TS brettin@lanl.gov FTW 2007-03-24 PLoS ONE 2, e947 Medical, Animal Pathogen 418136 18459 001061_GCAT 253022 640069311 NC_009257 Complete 4 Kb, 9 Kb, 40 Kb Phred/Phrap/Consed 16x Glimmer 3 1898 1734 1 0 32.3 Sanger USA Human finger wound in 1996 Human finger wound in 1996 Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plague-like illness Fresh water, Host Nonmotile Pathogen Archaea Euryarchaeota ARCHAEAL Methanocella sp. RC-I RC-I uncultured methanogenic archaeon RC-I Gc00528 Metagenome Complete and Published Public Max Planck Institute Liesack W http://www.mpi-marburg.mpg.de/liesack/ 2007-03-02 Science 313, 370-2 Biotechnological 351160 19641 002574_GCAT 173491 640427153 NC_009464 Complete Level 6: Finished 3179 3085 1 54.6 USA Italian Rice field Italy Italian Rice field Mesophile gram- Free living None Soil Methanogen Lithotroph Archaea Euryarchaeota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus maripaludis ARCHAEAL Methanococcus maripaludis C5 C5 Methanococcus maripaludis C5 Gc00527 Gi01306 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org MmarC5 2007-03-15 Unpublished Energy production, Biotechnological 402880 17641 001819_GCAT 203530 640069316 NC_009135 Complete 14x 1780 1935 1 1 33 Sanger USA Obligate anaerobe Coccus-shaped Nonsporulating Mesophile 6.5 - 8 gram- Free living Singles None Fresh water 20 - 45 Motile Nitrogen fixation, Hydrogenotrophic, Methanogen Lithotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Oxalobacteraceae Herminiimonas BACTERIAL Herminiimonas arsenicoxydans ULPAs1 ULPAs1 Herminiimonas arsenicoxydans CCM 7303, DSM 17148, LMG 22961 Yes Gc00526 Gi00789 Genome Complete and Published Public Genoscope Barbe V vbarbe@genoscope.cns.fr HEAR 2007-03-13 PLoS Genet 13, e53 Biotechnological, Environmental, Detoxification 204773 13467 000934_GCAT 689940 109381 640069313 NC_009138 Complete 3424 3425 1 0 54.3 France Anaerobe Rod-shaped Mesophile gram- Free living None Fresh water Motile Arsenic metabolizer, Detoxification Heterotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Pseudonocardiaceae Saccharopolyspora Saccharopolyspora erythraea BACTERIAL Saccharopolyspora erythraea NRRL2338 white NRRL2338 white Saccharopolyspora erythraea NRRL 2338 DSM 40517, NRRL2338, ATCC 11635 Yes Gc00525 Genome Complete and Published Public Univ of Cambridge Leadlay P http://www.bio.cam.ac.uk/~pflgroup/ SACE 2007-03-21 Nature Biotechnology 25, 447-453 Antibiotic production, Erythromycin production, Biotechnological 405948 18489 002573_GCAT 95816 640069329 NC_009142 Complete 2-10Kb fgenesB 8212 7267 1 0 71.1 United Kingdom Soil; Philippines Soil; Philippines Aerobe Filament-shaped Sporulating Mesophile gram+ Free living None 25 - 32 Nonmotile Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella loihica BACTERIAL Shewanella loihica PV-4 PV-4 Shewanella loihica PV-4 DSM 17748, ATCC BAA-1088 Yes Gc00524 Gi00556 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Shew 2007-03-07 Unpublished Environmental, Bioremediation 323850 13906 001497_GCAT 690434 212576 640069331 NC_009092 Complete 4602 4114 1 0 53.8 USA "Iron-rich mat; hydrothermal vent; 1,325 m depth from Naha Vents, on the south rift of Loihi, Hawaii" 1998 USA Hawaii 21.39752 -157.805895 1,325 meters Anaerobe Rod-shaped Nonsporulating Psychrophile gram- Free living Pairs, Singles None Hydrothermal vent, Marine Motile Heterotroph Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus MIT9301 MIT9301 Prochlorococcus marinus str. MIT 9301 Gc00523 Gi01229 Genome Complete and Published Public MIT, J. Craig Venter Institute Moore Foundation Chisholm S chisholm@mit.edu http://csbi.mit.edu/faculty/Members/PennyChisholm P9301 2007-03-05 PLoS Genetics 3, e231 Carbon cycle, Marine Microbial Initiative (MMI), Environmental 167546 15746 001370_GCAT 640069322 NC_009091 Complete 4 kb, 40 kb Celera 1641 2003 1 0 31.3 USA Sargasso Sea at a depth of 90m on July 1993 July 1993 Sargasso Sea 34.751389 -66.183611 90 meters Oval-shaped Mesophile gram- Free living Singles None Marine Nonmotile Photosynthetic Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter baumannii BACTERIAL Acinetobacter baumannii ATCC 17978 ATCC 17978 Acinetobacter baumannii ATCC 17978 ATCC 17978 Gc00522 Gi01667 Genome Complete and Published Public Yale Univ Snyder M michael.snyder@yale.edu A 2007-03-01 Genes Dev 21, 601-14 Human Pathogen, Medical 400667 17477 000639_GCAT 51504 209680 640069301 NC_009085 Complete 3976 3539 1 2 38.9 USA Patient with meningitis Patient with meningitis Homo sapiens Patient with meningitis Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Septicemia, Meningitis, Pneumonia Fresh water, Host Nonmotile Pathogen Heterotroph, Chemoheterotroph Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Pichia Pichia stipitis EUKARYAL Pichia stipitis CBS 6054 CBS 6054 Pichia stipitis CBS 6054 IFO 10063. NRRL Y-11545, CCRC 21777, CBS 6054, ATCC 58785 Gc00521 Gi00458 Genome Complete and Published Public DOE Joint Genome Institute DOE Jeffries TW twjeffri@wisc.edu PICST 2007-02-27 Nature Biotechnology 25, 319-26 Biotechnological, Fermentation, Ethanol production, Energy production 322104 16843 002068_GCAT 362616 640281010 NC_009068, NC_009042-8 Complete 15441 5816 8 0 41.1 Sanger USA Mesophile None Xylose fermenting Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 1106a 1106a Burkholderia pseudomallei 1106a Gc00520 Gi01877 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID DeShazer D david.deshazer@det.amedd.army.mil BURPS1106A 2007-02-28 Unpublished Animal Pathogen, Medical, Human Pathogen, Biothreat 357348 16182 000810_GCAT 212193 640069305 NC_009078, NC_009076 Complete 7100 7334 2 0 67 USA Aerobe Rod-shaped Mesophile gram- Free living Pneumonia, Bacteremia, Melioidosis Soil Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 668 668 Burkholderia pseudomallei 668 Gc00519 Gi01006 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID DeShazer D david.deshazer@det.amedd.army.mil BURPS668 2007-02-28 Unpublished Animal Pathogen, Medical, Human Pathogen, Biothreat 320373 13953 000809_GCAT 206204 640069306 NC_009075, NC_009074 Complete 7000 7378 2 0 68.3 USA Aerobe Rod-shaped Mesophile gram- Free living Pneumonia, Bacteremia, Melioidosis Soil Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei BACTERIAL Burkholderia mallei NCTC 10247 NCTC 10247 Burkholderia mallei NCTC 10247 NCTC 10247 Gc00518 Gi00928 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID DeShazer D david.deshazer@det.amedd.army.mil BMA 2007-02-27 Unpublished Animal Pathogen, Medical, Human Pathogen, Biothreat 320389 13946 000805_GCAT 341638 214832 640069304 NC_009080, NC_009079 Complete 5900 5973 2 0 68.5 USA Aerobe Rod-shaped Mesophile gram- Free living Glanders, Pneumonia Host Motile Pathogen Archaea Crenarchaeota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum calidifontis ARCHAEAL Pyrobaculum calidifontis JCM 11548 JCM 11548 Pyrobaculum calidifontis JCM 11548 JCM 11548 Gc00517 Gi01055 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Pcal 2007-02-27 Unpublished Biotechnological 410359 18111 001811_GCAT 556407 210224 640069326 NC_009073 Complete 12x 2009 2237 1 0 57.2 Sanger USA Terrestrial hot spring in the Philippines Philippines Terrestrial hot spring in the Philippines Facultative Rod-shaped Nonsporulating Hyperthermophile gram- Free living None Fresh water, Hot spring 90 - 95 Motile Heterotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium sp. JLS BACTERIAL Mycobacterium sp JLS JLS Mycobacterium sp. JLS Gc00516 Gi01021 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Mjls 2007-02-27 Unpublished Biotechnological 164757 16079 001222_GCAT 640069320 NC_009077 Complete 13x 6048 5899 1 0 68 Sanger USA Creosote-contaminated soil from the Champion International Superfund site in Libby Montana USA Creosote-contaminated soil from the Champion International Superfund site in Libby Montana 48.38828 115.55581 Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles None Creosote-contaminated soil, Soil Nonmotile PAH-degrading Chemoorganotroph Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Rhodobacter Rhodobacter sphaeroides BACTERIAL Rhodobacter sphaeroides ATCC 17029 ATCC 17029 Rhodobacter sphaeroides ATCC 17029 ATCC 17029 Gc00515 Gi01030 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Rsph17029 2007-02-23 Unpublished Bioremediation, Environmental, Energy production, Biotechnological 349101 15754 001413_GCAT 99113 208808 640069328 NC_009049, NC_009050 Complete 14x 4420 4320 2 1 69 Sanger USA Facultative Rod-shaped Mesophile gram- Free living Chains None 25 - 35 Motile Photosynthetic Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus pleuropneumoniae BACTERIAL Actinobacillus pleuropneumoniae L20 L20 5b Actinobacillus pleuropneumoniae L20 Gc00514 Gi01704 Genome Complete and Published Public Institute for Biological Sciences NRC Nash JHE john.nash@nrc-cnrc.gc.ca APL 2007-02-23 J Bacteriol. 190, 1495-6 Animal Pathogen, Swine Pathogen, Medical 416269 18221 000645_GCAT 213398 640069302 NC_009053 Complete 1.5 Kb, 2 Kb Consed 7.6x Glimmer 2274 2187 1 0 41.3 Canada Respiratory tract Facultative Rod-shaped Mesophile gram- Symbiotic Parasitic Chains, Pairs, Singles Porcine pleuropneumonia Host, Respiratory tract Nonmotile Pathogen, Virulent Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella baltica BACTERIAL Shewanella baltica OS155 OS155 Shewanella baltica OS155 ATCC BAA-1091 No Gc00513 Gi00551 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Sbal 2007-02-20 Unpublished Biotechnological 325240 13386 001488_GCAT 654238 205509 640069330 NC_009052 Complete 9x 5127 4752 1 4 46 Sanger USA "Sea-water; oxic zone; 2 ml per litre of oxygen, 90m depth from Baltic Sea" water column of a basin with anoxic, sulphide-containing deep water Gotland Deep, central Baltic Sea 90 meters Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Marine 4 Motile Heterotroph Archaea Euryarchaeota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoculleus Methanoculleus marisnigri ARCHAEAL Methanoculleus marisnigri JR1 JR1 Methanoculleus marisnigri JR1 ATCC 35101 Yes Gc00512 Gi01052 Genome Complete and Published Public DOE Joint Genome Institute DOE Anderson I IJAnderson@lbl.gov Memar 2007-02-16 Unpublished Biotechnological, Wastewater treatment, Energy production 368407 16330 001795_GCAT 267484 216145 640069318 NC_009051 Complete 12X 2478 2610 1 0 61.2 Sanger USA Sediment from the Black Sea Sediment from the Black Sea Anaerobe Coccus-shaped Nonsporulating Mesophile gram- Free living None Marine 21 - 25 Motile Methanogen Lithotroph Archaea Crenarchaeota Thermoprotei Desulfurococcales Desulfurococcaceae Staphylothermus Staphylothermus marinus ARCHAEAL Staphylothermus marinus F1, DSM 3639 F1, DSM 3639 Staphylothermus marinus F1 DSM 3639, ATCC 43588 Yes Gc00511 Gi01036 Genome Complete and Published Public DOE Joint Genome Institute DOE Anderson I IJAnderson@lbl.gov Smar 2007-02-21 BMC Genomics 10, 145 Tree of Life, Biotechnological 399550 17449 001525_GCAT 290548 640069332 NC_009033 Complete Level 6: Finished 3Kb, 8-10Kb, 40Kb 23766 pUC18, pMCL200, pCC1FOS Phred/Phrap/Consed 13.3x Critica, Glimmer 1570 1661 1 0 35 Sanger USA Hydrothermal marine sediment from Vulcano Island in Italy Italy Hydrothermal marine sediment from Vulcano Island in Italy Anaerobe Coccus-shaped Nonsporulating Hyperthermophile gram- Free living None Marine 92 Nonmotile Heterotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium thermocellum BACTERIAL Clostridium thermocellum ATCC 27405 ATCC 27405 Clostridium thermocellum ATCC 27405 ATCC 27405 Yes Gc00510 Gi00164 Genome Complete and Published Public Univ of Rochester, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Cthe 2007-02-14 Unpublished Energy production, Biotechnological 203119 314 000973_GCAT 40680 138311 640069309 NC_009012 Complete 3800 3375 1 0 39 USA Intestinal tract Anaerobe Rod-shaped Sporulating Thermophile gram+ Free living Pairs, Singles None Host, Intestinal microflora, Soil, Fresh water Motile Cellulose degrader, Ethanogenic Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis BACTERIAL Streptococcus sanguinis SK36 SK36 Streptococcus sanguinis SK36 Gc00509 Gi00616 Genome Complete and Published Public Virginia Commonwealth Univ, Commonwealth Biotechnologies, Inc NIH-NIDCR Macrina FL http://www.dentistry.vcu.edu/departments/philips/Faculty/macrina.htm SSA 2007-02-09 J Bacteriol 189, 3166-3175 Medical, Human Pathogen 388919 13942 000100_GCAT 205757 640069334 NC_009009 Complete 2388 2366 1 0 43.4 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Endocarditis Host, Oral microflora Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis BACTERIAL Lactococcus lactis cremoris MG1363 MG1363 Lactococcus lactis subsp. cremoris MG1363 Gc00508 Gi00318 Genome Complete and Published Public Institute of Food Research, Alimentary Pharmabiotic Centre, National Univ of Ireland, Bielefeld Univ, Univ of Groningen Kok J jan.kok@rug.nl llmg 2007-01-31 J Bacteriology 189, 3256-3270 Food industry, Biotechnological 416870 18797 000101_GCAT 640069315 NC_009004 Complete 2529 2596 1 0 35.7 Netherlands Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living None 40 Nonmotile Non-Pathogen Eukaryota Basidiomycota Ustilaginomycetes Ustilaginales Ustilaginaceae Ustilago Ustilago maydis EUKARYAL Ustilago maydis 521 521 Ustilago maydis 521 Gc00507 Gi00675 Genome Complete and Published Public BAYER, LION Bioscience AG, Broad Institute NIH-NHGRI Kahmann R kahmann@mpi-marburg.mpg.de UM 2007-02-01 Nature 444, 97-101 Agricultural, Plant Pathogen, Fungal Genome Initiative (FGI) 237631 1446 000102_GCAT 470636 640281003 AACP01000000 Complete Level 2: High-Quality Draft 10x 20500 6631 23 0 0 Sanger USA Mesophile Corn smut Pathogen Archaea Euryarchaeota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum labreanum ARCHAEAL Methanocorpusculum labreanum Z Z Methanocorpusculum labreanum Z DSM 4855, ATCC 43576 Yes Gc00506 Gi01051 Genome Complete and Published Public DOE Joint Genome Institute DOE Anderson I IJAnderson@lbl.gov Mlab 2007-02-01 Unpublished Energy production, Biotechnological 410358 18109 000103_GCAT 268426 212361 640069317 NC_008942 Complete Level 6: Finished 3kb, 7kb, 36kb 26432 Sanger, 390106 454 pUC18, pMCL200, pCC1Fos Newbler, Paracel 34x 1804 1889 1 0 50 Sanger, 454 USA Surface sediment from the LaBrea Tar Pits in Los Angeles 1989 USA Los Angeles 34.107811 -118.599658 0-5 cm Anaerobe Coccus-shaped Nonsporulating Mesophile gram- Free living None Fresh water 37 Nonmotile Methanogen Lithotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei BACTERIAL Burkholderia mallei NCTC 10229 NCTC 10229 Burkholderia mallei NCTC 10229 NCTC 10229 Gc00505 Gi00926 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID BMA 2007-01-30 Unpublished Animal Pathogen, Medical, Human Pathogen, Biothreat 412022 13943 000104_GCAT 341634 202617 640069303 NC_008836, NC_008835 Complete 5800 5630 2 1 68.2 USA Aerobe Rod-shaped Mesophile gram- Free living Glanders, Pneumonia Host Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Marinobacter Marinobacter hydrocarbonoclasticus BACTERIAL Marinobacter hydrocarbonoclasticus VT8 VT8 Marinobacter aquaeolei VT8 NCIMB 13596, DSM 11845, ATCC 700491, CIP 106100 Yes Gc00504 Gi00763 Genome Complete and Published Public DOE Joint Genome Institute, Woods Hole Oceanographic Institute DOE Edwards K http://www.whoi.edu/science/MCG/edwards/ Maqu 2006-12-28 Unpublished Bioremediation, Environmental, Detoxification, Biotechnological 351348 13239 000105_GCAT 118038 8807 639633037 NC_008740 Complete 9x 4326 4395 1 2 57.3 Sanger USA Mediterranean seawater near a petroleum refinery Mediterranean seawater near a petroleum refinery Facultative Rod-shaped Nonsporulating Mesophile Halophile gram- Free living None Marine 30 Motile Oil degrading, Hydrocarbon degrading, Iron oxidizer Heterotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bartonellaceae Bartonella Bartonella bacilliformis BACTERIAL Bartonella bacilliformis KC583 KC583 Bartonella bacilliformis KC583 ATCC 35685 Yes Gc00503 Gi01260 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID BARBAKC583 2007-01-04 Unpublished Medical, Human Pathogen 360095 16249 000106_GCAT 111064 189350 639633009 NC_008783 Complete 1445 1423 1 0 38.2 USA Blood Aerobe Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Carrion's disease, Oroya fever Blood, Host 28 Motile Pathogen Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Aspergillus Aspergillus niger EUKARYAL Aspergillus niger CBS 513.88 CBS 513.88 Gc00502 Gi00041 Genome Complete and Published Public DSM, Gene Alliance Stam H hein.stam@dsm.com 2007-01-28 Nature Biotechnology 25, 221 - 231 Biotechnological, Fermentation, Citric acid production 425011 000107_GCAT 640281012 NT_166518-38 Complete Level 2: High-Quality Draft 7.5x 33975 14086 8 0 50.37 Sanger Netherlands Filament-shaped Mesophile None Bacteria Proteobacteria Betaproteobacteria Burkholderiales Methylibium Methylibium petroleiphilum BACTERIAL Methylibium petroleiphilum PM1 PM1 Methylibium petroleiphilum PM1 ATCC BAA-1232 Yes Gc00501 Gi00587 Genome Complete and Published Public Lawrence Livermore National Lab, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Mpe 2007-01-29 J Bacteriol 189, 931-45 Environmental, Bioremediation 420662 10789 000108_GCAT 677456 640069319 NC_008825 Complete 16x 4044 4619 1 1 69.3 Sanger USA Compost biofilter from a water pollution treatment plant in Los Angeles USA Compost biofilter from a water pollution treatment plant in Los Angeles 34.052187 -118.243425 Facultative Rod-shaped Mesophile gram- Free living None Fresh water, Fresh water, Sludge 30 MTBE degrader Phototroph, Methylotroph Archaea Crenarchaeota Thermoprotei Desulfurococcales Pyrodictiaceae Hyperthermus Hyperthermus butylicus ARCHAEAL Hyperthermus butylicus DSM 5456 DSM 5456 Hyperthermus butylicus DSM 5456 DSM 5456 Yes Gc00500 Gi00301 Genome Complete and Published Public Epidauros Biotechnologie AG, Univ of Copenhagen European Union Garrett RA garrett@mermaid.molbio.ku.dk Hbut 2007-01-22 Archaea 2, 127-35 Biotechnological 415426 208 000109_GCAT 159206 640069314 NC_008818 Complete 1667 1671 1 0 53 European Consortium Sea floor of a solfataric environment at 9m depth off the shore of Sao Miguel Island Azores Azores Sea floor of a solfataric environment at 9m depth off the shore of Sao Miguel Island Azores 37.835276 -25.463562 9 meters Anaerobe Coccus-shaped Nonsporulating Hyperthermophile 7 gram- Free living None Marine 95 - 108 Motile Sulfur reducer Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus NATL1A NATL1A Prochlorococcus marinus str. NATL1A Gc00499 Gi01228 Genome Complete and Published Public MIT, J. Craig Venter Institute Moore Foundation Chisholm S chisholm@mit.edu http://csbi.mit.edu/faculty/Members/PennyChisholm NATL1 2007-01-22 PLoS Genetics 3, e231 Carbon cycle, Marine Microbial Initiative (MMI), Environmental 167555 15660 000110_GCAT 640069325 NC_008819 Complete 4 kb, 40 kb Celera 1864 2288 1 0 34 USA North Atlantic Ocean at a depth of 30m on April 1990 April 1990 North Atlantic Ocean 37.06667 -40.00000 30 meters Oval-shaped Mesophile gram- Free living Singles None Marine Nonmotile Photosynthetic Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus MIT9303 MIT9303 Prochlorococcus marinus str. MIT 9303 Gc00498 Gi00873 Genome Complete and Published Public MIT, J. Craig Venter Institute Moore Foundation Chisholm S chisholm@mit.edu http://csbi.mit.edu/faculty/Members/PennyChisholm P 2007-01-22 PLoS Genetics 3, e231 Carbon cycle, Marine Microbial Initiative (MMI), Environmental 59922 13496 000111_GCAT 3347 640069323 NC_008820 Complete 4 kb, 40 kb Celera 2682 3177 1 0 50 USA Sargasso Sea at a depth of 100m on July 1992 July 1992 Sargasso Sea 34.75139 -66.18361 100 meters Oval-shaped Mesophile gram- Free living Singles None Marine Nonmotile Photosynthetic Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus AS9601 AS9601 Prochlorococcus marinus str. AS9601 Gc00497 Gi00874 Genome Complete and Published Public MIT, J. Craig Venter Institute Moore Foundation Chisholm S chisholm@mit.edu http://csbi.mit.edu/faculty/Members/PennyChisholm A 2007-01-19 PLoS Genetics 3, e231 Carbon cycle, Marine Microbial Initiative (MMI), Environmental 146891 13548 000112_GCAT 640069321 NC_008816 Complete 4 kb, 40 kb Celera 1669 2024 1 0 31.3 USA Arabian Sea at a depth of 50m on November 1995 November 1995 Arabian Sea -19 67 50 meters Oval-shaped Mesophile gram- Free living Singles None Marine Nonmotile Photosynthetic Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus MIT9515 MIT9515 Prochlorococcus marinus str. MIT 9515 Gc00496 Gi00875 Genome Complete and Published Public MIT, J. Craig Venter Institute Moore Foundation Chisholm S chisholm@mit.edu http://csbi.mit.edu/faculty/Members/PennyChisholm P9515 2007-01-19 PLoS Genetics 3, e231 Carbon cycle, Marine Microbial Initiative (MMI), Environmental 167542 13617 000113_GCAT 640069324 NC_008817 Complete 4 kb, 40 kb Celera 1704 2004 1 0 30.8 USA Equatorial Pacific on June 1995, Surface waters June 1995 Equatorial Pacific -5.11667 -107.01667 Surface Oval-shaped Mesophile gram- Free living Singles None Surface water, Marine Nonmotile Photosynthetic Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Emericella Emericella nidulans EUKARYAL Aspergillus (Emericella) nidulans FGSC A4 FGSC A4 Aspergillus nidulans FGSC A4 Gc00495 Gi00040 Genome Complete and Published Public Broad Institute NIH-NHGRI Roe B http://cheminfo.chem.ou.edu/faculty/bar.html AN 2005-12-22 Nature 438, 1105-15 Fungal Genome Initiative (FGI), Model organism, Medical, Human Pathogen 227321 130 000114_GCAT 640281000 AACD00000000 Complete Level 2: High-Quality Draft 13x 30166 9727 8 0 50.34 Sanger USA Mesophile Aspergillosis Host Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O1:K1:H7 APEC APEC O1:K1:H7 Escherichia coli APEC O1 Gc00494 Genome Complete and Published Public Iowa State Univ Johnson T timjohns@iastate.edu APECO 2006-10-04 J Bacteriology 189, 3228-3236 Medical, Avian Pathogen 405955 16718 000115_GCAT 176528 640753023 NC_008563 Complete 2-3 Kb, 35-40 Kb 5082 5113 1 4 50.5 Sanger USA Lesion site of a dead turkey with colibacillosis APEC Pathotype Lesion site of a dead turkey with colibacillosis Homo sapiens Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Host, Human intestinal microflora Motile Pathogen Archaea Thaumarchaeota Cenarchaeales Cenarchaeaceae Cenarchaeum Cenarchaeum symbiosum ARCHAEAL Cenarchaeum symbiosum A A Cenarchaeum symbiosum A Gc00493 Gi00134 Metagenome Complete and Published Public DOE Joint Genome Institute, MBARI NSF DeLong EF delong@mit.edu http://www.mbari.org/~delong/ CENSYa 2006-11-29 PNAS 10, 18296-301 Evolutionary 414004 202 000116_GCAT 69323 641522613 NS_000189 Complete 2045 2107 1 0 57.7 USA 0-20 meters below sea level off the coast of Santa Barbara USA Santa Barbara 34.423403 -119.704416 0-20 meters Aerobe Rod-shaped Nonsporulating Psychrophile gram- Symbiotic Axinella mexicana None Coastal, Marine, Host 10 Symbiont Bacteria Proteobacteria Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Halorhodospira Halorhodospira halophila BACTERIAL Halorhodospira halophila SL1 SL1 Halorhodospira halophila SL1 DSM 244 Yes Gc00492 Gi00973 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Hhal 2007-01-11 Unpublished Biotechnological 349124 15767 000117_GCAT 268229 194409 639633026 NC_008789 Complete 12x 2674 2514 1 0 68 Sanger USA Salt lake mud Anaerobe Spiral-shaped Mesophile Halophile gram- Free living None Mud, Fresh water Motile Alkalophile Phototroph, Photosynthetic Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni jejuni 81-176 81-176 Penner serotype 23/36 Campylobacter jejuni subsp. jejuni 81-176 Gc00491 Gi01259 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID CJJ81176 2007-01-09 Unpublished Animal Pathogen, Poultry Pathogen, Medical, Human Pathogen 354242 16135 000118_GCAT 150873 639633017 NC_008787 Complete 1616 1865 1 2 30 USA Feces of an 9-year-old girl with diarrhea in Minnesota in 1981 1981 USA Feces of an 9-year-old girl with diarrhea in Minnesota in 1981 Homo sapiens Gastrointestinal tract Feces Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Singles, Chains Gastroenteritis, Diarrhea, Food poisoning Wastewater, Animal feces, Host Motile Food poisoning, Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Verminephrobacter Verminephrobacter eiseniae BACTERIAL Verminephrobacter eiseniae EF01-2 EF01-2 Verminephrobacter eiseniae EF01-2 Gc00490 Gi01545 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Veis 2007-01-09 Unpublished Evolutionary 391735 17187 000119_GCAT 179440 639633065 NC_008786 Complete 9.5x 5566 5165 1 1 65 Sanger USA Kidney of the earthworm Eisenia foetida Kidney of the earthworm Eisenia foetida Mesophile gram- Symbiotic Eisenia foetida None Soil, Host Symbiont Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium bovis BACTERIAL Mycobacterium bovis BCG Pasteur 1173P2 Pasteur 1173P2 Mycobacterium bovis BCG str. Pasteur 1173P2 Gc00489 Gi00381 Genome Complete and Published Public Institut Pasteur 2007-01-08 Unpublished Animal Pathogen, Biotechnological, Vaccine development, Human Pathogen, Medical, Cattle Pathogen 410289 18059 000120_GCAT 184499 639633040 NC_008769 Complete 4374 4033 1 0 65.6 France Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Bovine tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei BACTERIAL Burkholderia mallei SAVP 1 SAVP 1 Burkholderia mallei SAVP1 Gc00488 Gi00925 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID BMASAVP 2007-01-05 Unpublished Animal Pathogen, Medical, Human Pathogen, Biothreat 320388 13947 000121_GCAT 188010 639633015 NC_008784, NC_008785 Complete 5200 5303 2 0 68 USA Aerobe Rod-shaped Mesophile gram- Free living Glanders, Pneumonia Host Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis BACTERIAL Neisseria meningitidis C, FAM18 C, FAM18 C Neisseria meningitidis FAM18 ATCC 700532, DSM 15464 No Gc00487 Gi00402 Genome Complete and Published Public Sanger Institute, Max Planck Institute Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ NMC 2007-01-04 Unpublished Medical, Human Pathogen 272831 255 000122_GCAT 118117 187018 639633045 NC_008767 Complete 2194 2054 1 0 51.6 United Kingdom Patient with meningococcal septicemia Patient with meningococcal septicemia Homo sapiens Patient with meningococcal septicemia Blood Cerebro-spinal fluid Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Meningitis, Septicemia Host 35 - 37 Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Polaromonas Polaromonas naphthalenivorans BACTERIAL Polaromonas naphthalenivorans CJ2 CJ2 Polaromonas naphthalenivorans CJ2 ATCC BAA-779, DSM 15660 Yes Gc00486 Gi00957 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Pnap 2007-01-04 Environ Microbiology Epub Environmental, Bioremediation 365044 13418 000123_GCAT 376940 194205 639633051 NC_008781 Complete 11x 4410 5046 1 8 62.5 Sanger USA Naphthalene-contaminated freshwater sediment Naphthalene-contaminated freshwater sediment Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living None Fresh water 20 Nonmotile Naphthalene-degrading, PAH-degrading Heterotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. JS42 BACTERIAL Acidovorax sp JS42 JS42 Acidovorax sp. JS42 ATCC 700441 Gc00485 Gi00998 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Ajs 2007-01-04 Unpublished Biotechnological 232721 15685 000124_GCAT 579311 174244 639633003 NC_008782 Complete 11x 4448 4443 1 2 66.2 Sanger USA Nitrobenzene-contaminated sediment soil and ground water 1993 Nitrobenzene-contaminated sediment Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Soil Motile Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax avenae BACTERIAL Acidovorax avenae citrulli AAC00-1 AAC00-1 Acidovorax avenae subsp. citrulli AAC00-1 Gc00484 Gi00997 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Aave 2007-01-04 Unpublished Plant Pathogen, Agricultural 397945 15708 000125_GCAT 199634 639633002 NC_008752 Complete 11x 5352 4920 1 0 68.5 Sanger USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Bacterial fruit blotch Host Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella sp. W3-18-1 BACTERIAL Shewanella sp. W3-18-1 W3-18-1 Shewanella sp. W3-18-1 Gc00483 Gi01396 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Sputw3181 2007-01-03 Unpublished Biotechnological 351745 13902 000126_GCAT 198298 639633059 NC_008750 Complete 12x 4708 4342 1 0 44.6 Sanger USA "Marine sediment; under 997 m depth of oxic water from the Washington coast, Pacific Ocean" USA Marine sediment; under 997 m depth of oxic water from the Washington coast, Pacific Ocean Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Sediment, Deep sea, Marine Motile Heterotroph Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio vulgaris BACTERIAL Desulfovibrio vulgaris vulgaris DP4 DP4 Desulfovibrio vulgaris DP4 Gc00482 Gi01250 Genome Complete and Published Public DOE Joint Genome Institute DOE Stahl DA dastahl@u.washington.edu Dvul 2007-01-03 Environmental Microbiology 11, 2244-52 Bioremediation, Environmental, Biotechnological, Oil industry 391774 17227 000127_GCAT 165016 639633022 NC_008751 Complete 3.8Kb, 8Kb 10x 3462 3273 1 1 63 Sanger USA heavy metal-impacted lake sediment Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Sediment Motile Pollutant degrader, Sulfate reducer Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia enterocolitica BACTERIAL Yersinia enterocolitica 8081 8081 0:8 Yersinia enterocolitica subsp. enterocolitica 8081 NCTC 13174 Gc00481 Gi00703 Genome Complete and Published Public Sanger Institute, St. Bartholomew's Hospital, Institut Pasteur Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ YE 2006-12-15 PLoS Genet 2, e206 Medical, Human Pathogen 393305 190 000001_GCAT 719455 41539 640069335 NC_008800 Complete 4615 4279 1 1 42 European Consortium Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Gastroenteritis, Food poisoning Host 28 - 30 Motile Pathogen Heterotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micrococcaceae Arthrobacter Arthrobacter aurescens BACTERIAL Arthrobacter aurescens TC1 TC1 Arthrobacter aurescens TC1 Gc00480 Gi00035 Genome Complete and Published Public Univ of Minnesota, J. Craig Venter Institute NSF Sadowsky MJ sadowsky@soils.umn.edu AAur 2006-12-28 PLoS Genet 2, e214 Bioremediation, Environmental, Biotechnological 290340 12512 000129_GCAT 176825 639633005 NC_008711 Complete 4597 4844 1 2 62.3 USA Atrazine-contaminated soil in South Dakota USA Atrazine-contaminated soil in South Dakota Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Soil 30 Motile Atrazine metabolism Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium vanbaalenii BACTERIAL Mycobacterium vanbaalenii PYR-1 PYR-1 Mycobacterium vanbaalenii PYR-1 PYR-1, NRRL B-24157, DSM 7251 Yes Gc00479 Gi01024 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Mvan 2006-12-27 Unpublished Biotechnological 350058 15761 000130_GCAT 160662 639633044 NC_008726 Complete 12x 6491 6092 1 67.8 Sanger USA "oil-contaminated sediment in Redfish Bay, TX, USA" USA Redfish Bay, TX, USA 28.304381 -97.03125 Aerobe Rod-shaped Nonsporulating Mesophile Yellow gram+ Free living Singles None Sediment 24 - 37 Nonmotile PAH-degrading Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Psychromonadaceae Psychromonas Psychromonas ingrahamii BACTERIAL Psychromonas ingrahamii 37 37 Psychromonas ingrahamii 37 Gc00478 Gi01471 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Ping 2006-12-22 BMC Genomics 9, 210 Environmental 357804 16187 000131_GCAT 677503 639633052 NC_008709 Complete 11x 4559 3978 1 0 40.1 Sanger USA Sea ice off Point Barrow in northern Alaska USA Sea ice off Point Barrow in northern Alaska 71.3 -156.78 Anaerobe Rod-shaped Psychrophile gram- Free living None Deep sea, Marine Nonmotile Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella amazonensis BACTERIAL Shewanella amazonensis SB2B SB2B Shewanella amazonensis SB2B ATCC 700329 Yes Gc00477 Gi00550 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Sama 2006-12-21 Unpublished Biotechnological 326297 13385 000132_GCAT 121955 193925 639633057 NC_008700 Complete 9x 4306 3901 1 0 53.6 Sanger USA Shallow marine deposits of the Amazon River delta off of the coast of Brazil Brazil Shallow marine deposits of the Amazon River delta off of the coast of Brazil Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs None Sediment, Mud Motile Metal reducer Heterotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium sp. KMS BACTERIAL Mycobacterium sp KMS KMS Mycobacterium sp. KMS Gc00476 Gi01022 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Mkms 2006-12-20 Unpublished Biotechnological 189918 16081 000133_GCAT 639633042 NC_008705 Complete 12x 5737 6133 1 2 68.4 Sanger USA Creosote-contaminated soil from the Champion International Superfund site in Libby Montana USA Libby, Montana 48.38828 115.55581 Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles None Soil, Creosote-contaminated soil Nonmotile PAH-degrading Chemoorganotroph Archaea Crenarchaeota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum islandicum ARCHAEAL Pyrobaculum islandicum DSM 4184 DSM 4184 Pyrobaculum islandicum DSM 4184 DSM 4184 Yes Gc00475 Gi01057 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Pisl 2006-12-20 Unpublished Biotechnological 384616 16743 000134_GCAT 158684 178974 639633053 NC_008701 Complete 12x 1826 2110 1 0 49.6 Sanger USA Water from a geothermal power plant in Iceland Iceland Water from a geothermal power plant in Iceland Anaerobe Rod-shaped Nonsporulating Hyperthermophile gram- Free living None Fresh water 100 Motile Neutrophilic Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Nocardioidaceae Nocardioides Nocardioides sp. JS614 BACTERIAL Nocardioides sp. JS614 JS614 Nocardioides sp. JS614 ATCC BAA-499 No Gc00474 Gi00411 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Noca 2006-12-18 Unpublished Biotechnological 196162 12738 000135_GCAT 352430 129374 639633046 NC_008699 Complete 4985 5016 1 1 71.7 USA soil, Carson, CA, USA June 2001 USA 33.831609 -118.263731 Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Soil 30 Nonmotile Archaea Crenarchaeota Thermoprotei Thermoproteales Thermofilaceae Thermofilum Thermofilum pendens ARCHAEAL Thermofilum pendens Hrk 5 Hrk 5 Thermofilum pendens Hrk 5 Gc00473 Gi01042 Genome Complete and Published Public DOE Joint Genome Institute DOE Anderson I IJAnderson@lbl.gov Tpen 2006-12-18 J. Bacteriology 190, 2957-65 Biotechnological 368408 16331 000136_GCAT 181142 639633064 NC_008698 Complete 3 Kb, 6 Kb, 40 Kb Phred/Phrap/Consed 11x Critica, Glimmer 1781 1964 1 1 57.7 Sanger USA Solfataric hot spring in Iceland Iceland Solfataric hot spring in Iceland Anaerobe Rod-shaped Nonsporulating Hyperthermophile gram- Free living None Fresh water 88 Motile Acidophile Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Paracoccus Paracoccus denitrificans BACTERIAL Paracoccus denitrificans PD1222 PD1222 Paracoccus denitrificans PD1222 Gc00472 Gi00431 Genome Complete and Published Public DOE Joint Genome Institute, Georgia Institute of Technology DOE Bruce D microbes@cuba.jgi-psf.org Pden 2006-12-13 Unpublished Bioremediation, Evolutionary, Energy conservation, Biotechnological 318586 13020 000137_GCAT 191706 639633048 NC_008686, NC_008687 Complete 4582 5194 2 1 66.7 USA Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living None Soil 25 - 30 Nonmotile Stores polyhydroxybutyrate, Hydrogen oxidizer Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeobacteroides BACTERIAL Chlorobium phaeobacteroides DSM 266 DSM 266 Chlorobium phaeobacteroides DSM 266 DSM 266 Yes Gc00471 Gi00146 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Cpha266 2006-12-11 Unpublished Biotechnological, Hydrogen production, Energy production 290317 12609 000138_GCAT 156549 639633020 NC_008639 Complete 3133 2848 1 0 48.4 USA Anoxic sulfide containing water 19.5 m below surface of meromictic Lake Blankvann in Norway Norway Lake Blankvann, Norway 60.025392 10.666437 19.5 meters Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Chains, Singles None Fresh water Nonmotile Nitrogen fixation, Green sulfur Photosynthetic Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium adolescentis BACTERIAL Bifidobacterium adolescentis ATCC 15703 ATCC 15703 Bifidobacterium adolescentis ATCC 15703 ATCC15703 Yes Gc00470 Gi01394 Genome Complete and Published Public Gifu Univ Suzuki T suzuki@cc.gifu-u.ac.jp B 2006-12-06 Unpublished Food industry, Biotechnological 367928 16321 000139_GCAT 5333 326974 639633010 NC_008618 Complete 2089 1716 1 0 59.2 Japan Intestinal tract Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host, Intestinal microflora 37 Nonmotile Probiotic, Non-Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium ulcerans BACTERIAL Mycobacterium ulcerans Agy99 Agy99 Mycobacterium ulcerans Agy99 Gc00469 Gi00386 Genome Complete and Published Public Institut Pasteur MU 2006-12-01 Genome Res 17, 192-200 Medical, Human Pathogen 362242 16230 000140_GCAT 197037 642555140 NC_008611 Complete 2-3Kb, 3-5Kb, 5-10Kb Phrap 8x 5631 4291 1 1 65.5 Sanger France ulcerative lesion on the right elbow of a female patient from the Ga district of Ghana in 1999 1999 Ghana ulcerative lesion on the right elbow of a female patient from the Ga district of Ghana in 1999 Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Buruli ulcer Host, Fresh water 32 Nonmotile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Candidatus Ruthia magnifica BACTERIAL Candidatus Ruthia magnifica Cm Cm Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) Gc00468 Metagenome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Rmag 2006-12-01 Science 315, 998-1000 Environmental, Biotechnological 413404 16841 000141_GCAT 639633019 NC_008610 Complete 14x 1160 1156 1 0 35 Sanger USA Non isolate Non isolate Mesophile gram- Symbiotic Endosymbiotic intracellular Calyptogena magnifica None Marine, Endosymbiont, Hydrothermal vent, Host Sulfur oxidizer, Carbon sequestration, Nitrogen fixation Chemoautotroph Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Pelobacteraceae Pelobacter Pelobacter propionicus BACTERIAL Pelobacter propionicus DSM 2379 DSM 2379 Pelobacter propionicus DSM 2379 DSM 2379, NBRC 103807 Yes Gc00467 Gi00807 Genome Complete and Published Public Univ of Massachusetts Amherst, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Ppro 2006-11-30 Unpublished Biotechnological 338966 13384 000142_GCAT 157958 137797 639633050 NC_008609 Complete 15x 4008 3978 1 2 59 Sanger USA Creek mud; Germany France Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Fresh water, Marine 30 Nonmotile Iron reducer Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter fetus BACTERIAL Campylobacter fetus fetus 82-40 82-40 Campylobacter fetus subsp. fetus 82-40 Gc00466 Gi01265 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID CFF 2006-11-29 Unpublished Animal Pathogen, Poultry Pathogen, Medical, Human Pathogen 360106 16293 000143_GCAT 191674 639633016 NC_008599 Complete 1773 1870 1 0 33 USA Blood of a human patient who was having a renal transplant Blood of a human patient who was having a renal transplant Homo sapiens Patient with a renal transplant Blood Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Singles, Chains Infertility, Meningitis, Septicemia, Bacteremia Wastewater, Host Motile Pathogen, Food poisoning Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella novicida BACTERIAL Francisella tularensis novicida U112 U112 Francisella novicida U112 Gc00465 Gi01161 Genome Complete and Published Public Univ of Washington Rohmer L lrohmer@u.washington.edu FTN 2006-11-28 Genome Biol. 8, R102 Animal Pathogen, Medical, Human Pathogen, Biothreat 401614 16088 000144_GCAT 186071 639633024 NC_008601 Complete Phred/Phrap 10.3x Glimmer 2.13 1910 1829 1 0 32.5 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Fresh water Nonmotile Nonvirulent, Non-Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium novyi BACTERIAL Clostridium novyi NT NT Clostridium novyi NT Gc00464 Genome Complete and Published Public Howard Hughes Medical Institute, Johns Hopkins Kimmel Comprehensive Cancer Center Zhou S sbzhou@jhmi.edu NT01CX 2006-11-28 Nature Biotechnology 24, 1573-80 Medical, Anti-tumor agent 386415 16820 000145_GCAT 179771 639633021 NC_008593 Complete 2547 2547 1 0 28.9 USA Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Soil, Host Motile Non-Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis BACTERIAL Bacillus thuringiensis Al Hakam Al Hakam Bacillus thuringiensis str. Al Hakam Gc00463 Genome Complete and Published Public Los Alamos National Laboratory, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org BALH 2004-11-27 J. Bacteriology 189, 3680-3681 Agricultural, Insect Pathogen, Biotechnological 412694 18255 000146_GCAT 191300 639633008 NC_008600 Complete Phred/Phrap/Consed 24x 5257 5090 1 1 35.4 USA Severe human tissue necrosis Severe human tissue necrosis Homo sapiens Skin Facultative Rod-shaped Sporulating Mesophile gram+ Free living Sotto disease Host, Soil Motile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium avium BACTERIAL Mycobacterium avium 104 104 Mycobacterium avium 104 Gc00462 Gi00380 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID MAV 2006-11-20 Unpublished Animal Pathogen, Medical, Human Pathogen 243243 88 000147_GCAT 198166 639633039 NC_008595 Complete 5475 5339 1 0 69 USA AIDS patient AIDS patient Homo sapiens Patient with AIDS Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis type pulmonary infection, Respiratory infection Fresh water, Host, Soil 37 Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium smegmatis BACTERIAL Mycobacterium smegmatis MC2 155 MC2 155 Mycobacterium smegmatis str. MC2 155 Gc00461 Gi00384 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Fleischmann RD rdfleisc@tigr.org MSMEG 2006-11-20 Unpublished Medical, Human Pathogen 246196 92 000148_GCAT 117498 232052 639633041 NC_008596 Complete 6988 6978 1 0 67.4 USA Mutant of M smegmatis isolated on 1990 1990 Mutant of M smegmatis isolated on 1990 Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Soft tissue lesions Host 37 Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Acidothermaceae Acidothermus Acidothermus cellulolyticus BACTERIAL Acidothermus cellulolyticus 11B 11B Acidothermus cellulolyticus 11B ATCC 43068 Yes Gc00460 Gi00919 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Acel 2006-11-09 Genome Research 19(6):1033-43 Biofuels, Ethanol production, Energy production, Biotechnological 351607 16097 000149_GCAT 301709 11627 639633001 NC_008578 Complete 13.5x 2445 2266 1 0 66.9 Sanger USA Acid hot spring in Yellowstone USA Acid hot spring in Yellowstone 44.393704 -110.567703 Aerobe Sporulating Thermophile gram+ Free living None Fresh water, Hot spring 58 Cellulose degrader, Biomass degrader, Acidophile Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella BACTERIAL Shewanella sp. ANA-3 ANA-3 Shewanella sp. ANA-3 Gc00459 Gi00967 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Shewana 2006-11-08 Unpublished Biotechnological 94122 13905 000150_GCAT 196399 639633058 NC_008577 Complete 11x 4972 4649 1 1 48 Sanger USA Arsenate treated wood pier that was in a brackish estuary (Eel Pond) in Woods Hole Massachusetts USA brackish estuary (Eel Pond) in Woods Hole Massachusetts 41.525871 -70.670327 Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Soil 37 Motile Heterotroph Bacteria Proteobacteria Magnetococcus Magnetococcus sp. MC-1 BACTERIAL Magnetococcus sp. MC-1 MC-1 Magnetococcus sp. MC-1 Gc00458 Gi00343 Genome Complete and Published Public DOE Joint Genome Institute, Univ of South California DOE Bruce D microbes@cuba.jgi-psf.org Mmc1 2006-11-08 Appl Environ Microbiology 75, 4835-52 Biotechnological 156889 262 000151_GCAT 193560 639633036 NC_008576 Complete 16x 4700 3869 1 0 54.2 Sanger USA Water from the Pettaquamscutt Estuary in Rhode Island USA Water from the Pettaquamscutt Estuary in Rhode Island 41.476883 -71.426451 Facultative Coccus-shaped Mesophile gram- Free living None Marine Motile Iron reducer, Magnetite production Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Gramella Gramella forsetii BACTERIAL Gramella forsetii KT0803 KT0803 Gramella forsetii KT0803 Gc00457 Gi01472 Genome Complete and Published Public Max Planck Institute MGE Gloeckner FO http://www.mpi-bremen.de/en/Microbial_Genomics_Group.html 2006-11-06 Unpublished Environmental 411154 19061 000024_GCAT 188892 639633025 NC_008571 Complete 3789 3640 1 0 36.6 Germany Concentrated seawater collected from the German Bight in the North Sea Concentrated seawater collected from the German Bight in the North Sea Aerobe Rod-shaped Mesophile gram- Free living None Marine Bacteria Proteobacteria Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas hydrophila BACTERIAL Aeromonas hydrophila hydrophila ATCC7966 ATCC7966 Aeromonas hydrophila subsp. hydrophila ATCC 7966 NCTC 8049, CDC 359-60, ATCC7966 Yes Gc00456 Gi00018 Genome Complete and Published Public Univ of Maryland, J. Craig Venter Institute NSF Martin-Carnahan A acarnaha@epi.umaryland.edu AHA 2006-11-06 J Bacteriology 188, 8272-82 Animal Pathogen, Fish Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 380703 16697 000153_GCAT 37798 197034 639633004 NC_008570 Complete 4744 4447 1 0 61.6 USA Canned milk from the United States USA Canned milk from the United States Facultative Rod-shaped Mesophile gram- Free living Septicemia, Food poisoning, Gastroenteritis Wastewater, Fresh water, Fresh water, Food 22 - 28 Motile Pathogen Heterotroph Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes Manfredo (M5) Manfredo (M5) M5 Streptococcus pyogenes str. Manfredo Gc00455 Gi00615 Genome Complete and Published Public Sanger Institute, Univ of Newcastle Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ SpyM5 2006-09-29 J Bacteriology 189, 1473-1477 Medical, Human Pathogen 160491 270 000154_GCAT 640069333 NC_009332 Complete 1840 1915 1 0 38.6 United Kingdom Patient in the 1950's in Chicago 1950's USA Patient in the 1950's in Chicago 41.879535 -87.624333 Homo sapiens Patient Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Rheumatic fever Nasopharyngeal microflora, Host 30 - 35 Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Rhodocyclales Rhodocyclaceae Azoarcus Azoarcus sp. BH72 BACTERIAL Azoarcus sp. BH72 BH72 Azoarcus sp. BH72 Gc00454 Gi00046 Genome Complete and Published Public MWG-Biotech, Bielefeld Univ BMBF Puhler A puehler@genetik.uni-bielefeld.de azo 2006-10-22 Nat Biotechnol 24, 1385-91 Agricultural, Biotechnological 62928 13217 000155_GCAT 49226 6802 639633007 NC_008702 Complete 4376 4062 1 0 67.9 Germany Facultative Rod-shaped Mesophile gram- Free living None Soil, Host, Obligate endophyte 26 Motile Nitrogen fixation, Non-Pathogen Diazotroph Bacteria Proteobacteria Deltaproteobacteria Syntrophobacterales Syntrophobacteraceae Syntrophobacter Syntrophobacter fumaroxidans BACTERIAL Syntrophobacter fumaroxidans MPOB MPOB Syntrophobacter fumaroxidans MPOB DSM 10017 Yes Gc00453 Gi00642 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Sfum 2006-10-26 Unpublished Bioreactors, Biotechnological, Hydrogen production, Energy production, Carbon cycle 335543 13013 000156_GCAT 161775 138280 639633063 NC_008554 Complete 4990 4219 1 0 59 USA Granular sludge from an anaerobic sludge bed reactor, The Netherlands Netherlands Granular sludge from an anaerobic sludge bed reactor Anaerobe Rod-shaped Nonsporulating Mesophile gram- None Fresh water 37 Nonmotile Biodegradation, Propionate metabolism Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosaetaceae Methanosaeta Methanosaeta thermophila ARCHAEAL Methanosaeta thermophila PT PT Methanosaeta thermophila PT DSM 6194 Yes Gc00452 Gi00974 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Mthe 2006-10-25 Unpublished Biofuels, Energy production, Biotechnological 349307 15765 000157_GCAT 159807 152431 639633038 NC_008553 Complete 11x 1879 1833 1 0 53.5 Sanger USA Anaerobe Nonsporulating Thermophile gram- Free living None Fresh water, Sediment, Rice paddies Nonmotile Acetotrophic, Methanogen Lithotroph Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus thermophilus BACTERIAL Streptococcus thermophilus LMD-9 LMD-9 Streptococcus thermophilus LMD-9 ATCC BAA-491 No Gc00451 Gi00623 Genome Complete and Published Public Univ of Nebraska, Fidelity Systems Inc, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org STER 2006-10-18 PNAS 103, 15611-6 Biotechnological, Yogurt production, Food industry 322159 13773 000158_GCAT 493745 188398 639633062 NC_008532 Complete 1856 1888 1 2 39.1 USA Facultative Coccus-shaped Nonsporulating Thermotolerant gram+ Free living Pairs, Chains None Milk 37 Nonmotile Homofermentative, Nonprobiotic Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis BACTERIAL Lactococcus lactis cremoris SK11 SK11 Lactococcus lactis subsp. cremoris SK11 NCDO 2016, NCIMB 702016, NCIMB 702004, NCDO 2004 Gc00450 Gi00319 Genome Complete and Published Public Fidelity Systems Inc, DOE Joint Genome Institute, Utah State Univ DOE Bruce D microbes@cuba.jgi-psf.org LACR 2006-10-18 PNAS 103, 15611-6 Biotechnological, Food industry, Cheese production 272622 401 000159_GCAT 348311 188476 639633031 NC_008527 Complete 2438 2670 1 5 35.9 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living None 40 Nonmotile Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cenocepacia BACTERIAL Burkholderia cenocepacia HI2424, BCC1 HI2424, BCC1 Burkholderia cenocepacia HI2424 Gc00449 Gi00806 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bcen 2006-10-25 Unpublished Medical, Human Pathogen 331272 13918 000160_GCAT 133603 639633014 NC_008542-4 Complete 7536 7116 3 1 66.4 USA Agricultural soil in upstate NY USA Agricultural soil in upstate NY Facultative Rod-shaped Mesophile gram- Free living Pneumonia Soil, Host Motile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Roseobacter Roseobacter denitrificans BACTERIAL Roseobacter denitrificans OCh 114 OCh 114 Roseobacter denitrificans OCh 114 CIP 104266, ATCC 33942, DSM 7001, CECT 5011 Yes Gc00448 Gi00726 Genome Complete and Published Public Arizona State Univ, TGen NSF Blankenship RE Blankenship@asu.edu RD1 2006-06-22 J Bacteriology 189, 683-690 Environmental, Biotechnological 375451 16426 000161_GCAT 109965 5651 639633056 NC_008209 Complete 9.6x 4133 4229 1 4 59 Sanger USA seaweed, Enteromorpha linza from Aburatsubo Inlet Kanagawa Japan Japan Aburatsubo Inlet Kanagawa Japan 35.447507 139.642345 Plants Aerobe Rod-shaped Mesophile gram- None Fresh water Motile Phototroph, Photosynthetic Eukaryota Apicomplexa Aconoidasida Theileriidae Theileria Theileria annulata EUKARYAL Theileria annulata Ankara clone C9 Ankara clone C9 Theileria annulata strain Ankara Gc00296 Gi00651 Genome Complete and Published Public Sanger Institute, Univ of Glasgow Beowulf Genomics Berriman M mb4@sanger.ac.uk 2005-07-01 Science 309, 134-7 Medical, Animal Pathogen 353154 153 000162_GCAT 0 NW_001091927-34 Complete Level 2: High-Quality Draft 10x 8351 3792 4 0 32.5 Sanger United Kingdom Mesophile Tropical theileriosis Host Pathogen, Intracellular, Parasite Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micrococcaceae Arthrobacter Arthrobacter sp. FB24 BACTERIAL Arthrobacter sp. FB24 FB24 Arthrobacter sp. FB24 Gc00445 Gi00036 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Arth 2006-10-24 Unpublished Bioremediation, Environmental, Biotechnological 290399 12640 000163_GCAT 133793 639633006 NC_008541 Complete 4698 4671 1 3 65.5 USA Chromate and xylene enriched soil Chromate and xylene enriched soil Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Soil Motile Hydrocarbon degrading, Radiation resistant Bacteria Acidobacteria Solibacteres Solibacterales Solibacteraceae Candidatus Solibacter Candidatus Solibacter usitatus BACTERIAL Solibacter usitatus Ellin6076 Ellin6076 Solibacter usitatus Ellin6076 Gc00446 Gi00006 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Acid 2006-10-16 Appl Environ Microbiol. 75, 2046-56 Environmental, Bioremediation 234267 12638 000164_GCAT 187098 639633060 NC_008536 Complete 9965 8056 1 0 61.9 USA "rotationally grazed pasture of perennial ryegrass and white clover in Victoria, Australia" Australia rotationally grazed pasture of perennial ryegrass and white clover in Victoria, Australia -36.5588 145.415039 Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Clusters None Soil, Fresh water 30 Nonmotile Acidophile Chemoorganotroph, Oligotroph, Heterotroph Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus gasseri BACTERIAL Lactobacillus gasseri ATCC 33323 ATCC 33323 Lactobacillus gasseri ATCC 33323 ATCC 33323 Yes Gc00447 Gi00314 Genome Complete and Published Public DOE Joint Genome Institute, Fidelity Systems Inc, North Carolina State Univ DOE Klaenhammer T http://fsweb2.schaub.ncsu.edu/trkwebsite/Main/main.htm LGAS 2006-10-18 PNAS 103, 15611-6 Food industry, Biotechnological 324831 84 000165_GCAT 13671 74642 639633030 NC_008530 Complete 1900 1949 1 0 35.3 USA Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Mesophile gram+ Free living Chains None Host, Intestinal microflora 25 - 35 Nonmotile Probiotic Bacteria Firmicutes Bacilli Lactobacillales Leuconostocaceae Leuconostoc Leuconostoc mesenteroides BACTERIAL Leuconostoc mesenteroides mesenteroides ATCC 8293 ATCC 8293 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 ATCC 8293 Yes Gc00444 Gi00330 Genome Complete and Published Public DOE Joint Genome Institute, Fidelity Systems Inc, North Carolina State Univ DOE Breidt F http://www.cals.ncsu.edu/food_science/faculty/Breidt/ LEUM 2006-10-24 PNAS 103, 15611-6 Biotechnological, Lactic acid production, Food industry 203120 315 000166_GCAT 505624 193258 639633034 NC_008531 Complete 2038 2102 1 1 37.7 USA Facultative Coccus-shaped Mesophile gram+ Free living None 20 - 30 Nonmotile Vancomycin resistant Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus delbrueckii BACTERIAL Lactobacillus delbrueckii bulgaricus ATCC BAA-365 ATCC BAA-365 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 ATCC BAA-365 Gc00443 Gi00313 Genome Complete and Published Public DOE Joint Genome Institute, Fidelity Systems Inc, Univ of Wisconsin-Madison DOE Bruce D microbes@cuba.jgi-psf.org LBUL 2006-10-18 PNAS 103, 15611-6 Biotechnological, Lactic acid production, Food industry 321956 403 000167_GCAT 373993 196186 639633029 NC_008529 Complete 1900 1973 1 0 49.7 USA Derived from a French starter culture France Derived from a French starter culture Intestinal tract Facultative Rod-shaped Mesophile gram+ Free living Chains None Host, Intestinal microflora 42 Nonmotile Probiotic Eukaryota Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila EUKARYAL Tetrahymena thermophila SB210 (Macronucleus) SB210 (Macronucleus) Tetrahymena thermophila SB210 Gc00442 Gi00648 Genome Complete and Published Public J. Craig Venter Institute NSF Eisen JA http://www.tigr.org/~jeisen/ 2006-09-06 PLoS Biol 4, e286 Protein production, Biotechnological 312017 12564 000168_GCAT 0 NZ_AAGF00000000 Complete Level 2: High-Quality Draft 103927 27000 225 0 22.3 Sanger USA Mesophile None Fresh water Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Buchnera Buchnera aphidicola BACTERIAL Buchnera aphidicola Cc Cc Buchnera aphidicola str. Cc (Cinara cedri) Gc00441 Gi00103 Genome Complete and Published Public Univ of Valencia Moya A http://www.uv.es/cavanilles/personal/Andres_Moya/ BCc 2006-10-18 Science 314, 312-3 Biotechnological 372461 16372 000169_GCAT 182084 643348521 NC_008513 Complete 420 431 1 0 20.1 Spain Mesophile gram- Symbiotic Cinara cedri None Endosymbiont, Host, Insect endosymbiont Bacteria Firmicutes Bacilli Lactobacillales Leuconostocaceae Oenococcus Oenococcus oeni BACTERIAL Oenococcus oeni PSU-1 PSU-1 Oenococcus oeni PSU-1 ATCC BAA-331 Yes Gc00440 Gi00417 Genome Complete and Published Public Fidelity Systems Inc, Univ of California, Davis, DOE Joint Genome Institute DOE Mills D http://wineserver.ucdavis.edu/people/Faculty/mills/index.htm OEOE 2006-10-18 PNAS 103, 15611-6 Biotechnological, Malolactic fermentation, Food industry 203123 317 000170_GCAT 175948 639633047 NC_008528 Complete 1800 1789 1 0 37.9 USA Wine, Bob Beelman, Penn State University USA Penn State University Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living None 17 - 25 Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus pentosaceus BACTERIAL Pediococcus pentosaceus ATCC 25745 ATCC 25745 Pediococcus pentosaceus ATCC 25745 ATCC 25745 Gc00439 Gi00437 Genome Complete and Published Public DOE Joint Genome Institute, Fidelity Systems Inc, Utah State Univ DOE Bruce D microbes@cuba.jgi-psf.org PEPE 2006-10-18 PNAS 103, 15611-6 Biotechnological, Lactic acid production, Food industry 278197 398 000171_GCAT 16204 191453 639633049 NC_008525 Complete 1800 1897 1 0 37.4 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living None Plants, Fruits 30 Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus casei BACTERIAL Lactobacillus casei ATCC 334 ATCC 334 Lactobacillus casei ATCC 334 ATCC 334 Gc00438 Gi00311 Genome Complete and Published Public Fidelity Systems Inc, DOE Joint Genome Institute, Utah State Univ DOE Broadbent J http://www.usu.edu/familylife/nfs/gee%20whiz/Jeff.PDF LSEI 2006-10-18 PNAS 103, 15611-6 Biotechnological, Lactic acid production, Food industry 321967 402 000172_GCAT 28985 185913 639633028 NC_008526 Complete 2895 2921 1 1 46.6 USA Homo sapiens Gastrointestinal tract Intestinal tract Facultative Rod-shaped Mesophile gram+ Free living Chains None Host, Intestinal microflora 30 - 40 Nonmotile Probiotic Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae D39 D39 Streptococcus pneumoniae D39 Gc00437 Gi00732 Genome Complete and Published Public Indiana Univ, J. Craig Venter Institute NSF Winkler ME mwinkler@bio.indiana.edu SPD 2006-10-12 J Bacteriol 189, 38-51 Medical, Human Pathogen 373153 16374 000173_GCAT 187730 639633061 NC_008533 Complete 2000 2136 1 0 40 USA used by Avery, Macleod, and McCarty in their landmark study on the role of DNA as the agent of transformation Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia, Meningitis, Otitis media Nasopharyngeal microflora, Host 30 - 35 Nonmotile Alpha-hemolytic, Pathogen Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus brevis BACTERIAL Lactobacillus brevis ATCC 367 ATCC 367 Lactobacillus brevis ATCC 367 ATCC 367 Yes Gc00436 Gi00310 Genome Complete and Published Public DOE Joint Genome Institute, Fidelity Systems Inc, UCSD DOE Bruce D microbes@cuba.jgi-psf.org LVIS 2006-10-18 PNAS 103, 15611-6 Food industry, Biotechnological 387344 404 000174_GCAT 13244 187897 639633027 NC_008497 Complete 2291 2377 1 2 46 USA Intestinal tract Aerobe Rod-shaped Mesophile gram+ Free living Chains None Intestinal microflora, Soil, Host 25 - 35 Motile Probiotic Bacteria Proteobacteria Gammaproteobacteria Candidatus Carsonella Candidatus Carsonella ruddii BACTERIAL Candidatus Carsonella ruddii PV PV Candidatus Carsonella ruddii PV Gc00435 Genome Complete and Published Public Kitasato Univ, RIKEN Nakabachi, A bachi@email.arizona.edu CRP 2006-10-17 Science 314, 267 Evolutionary, Agricultural 387662 17977 000175_GCAT 639633018 NC_008512 Complete 159 244 1 0 16 USA Mesophile gram- Free living Pachypsylla venusta None Endosymbiont, Host, Insect endosymbiont Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Leptospiraceae Leptospira Leptospira borgpetersenii BACTERIAL Leptospira borgpetersenii hardjobovis JB197 JB197 Hardjo-bovis JB197 Leptospira borgpetersenii serovar Hardjo-bovis JB197 Gc00434 Genome Complete and Published Public NADC, AGRF, Monash Univ Zuerner R http://www.ars.usda.gov/pandp/people/people.htm?personid=6333 LBJ 2006-10-13 PNAS 103, 14560-5 Medical, Animal Pathogen 355277 16148 000176_GCAT 191861 639633032 NC_008511, NC_008510 Complete 3900 3228 2 0 40 International Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Leptospirosis Fresh water, Soil, Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Leptospiraceae Leptospira Leptospira borgpetersenii BACTERIAL Leptospira borgpetersenii hardjobovis L550 L550 Hardjo-bovis L550 Leptospira borgpetersenii serovar Hardjo-bovis L550 Gc00433 Gi00327 Genome Complete and Published Public NADC, AGRF, Monash Univ Zuerner R http://www.ars.usda.gov/pandp/people/people.htm?personid=6333 LBL 2006-10-13 PNAS 103, 14560-5 Animal Pathogen, Medical, Human Pathogen 355276 16146 000177_GCAT 177086 639633033 NC_008508, NC_008509 Complete 3920 3264 2 0 40 Australia Human clinical sample Human clinical sample Homo sapiens Patient Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Leptospirosis Fresh water, Soil, Host Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa PA14 UCBPP PA14 UCBPP Pseudomonas aeruginosa UCBPP-PA14 Gc00432 Gi00489 Genome Complete and Published Public HPGC Ausubel FM http://ausubellab.mgh.harvard.edu/ PA 2006-10-11 Genome Biol 7, R90 Animal Pathogen, Plant Pathogen, Medical, Human Pathogen 208963 386 000178_GCAT 106485 639279310 NC_008463 Complete 6537 6039 1 0 66.3 USA Human clinical isolate Human clinical isolate Homo sapiens Patient Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Nocosomial infection, Opportunistic infection Fresh water, Soil, Wastewater, Host 25 - 30 Motile Pathogen Heterotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bradyrhizobiaceae Rhodopseudomonas Rhodopseudomonas palustris BACTERIAL Rhodopseudomonas palustris BisA53 BisA53 Rhodopseudomonas palustris BisA53 Gc00431 Gi00961 Genome Complete and Published Public DOE Joint Genome Institute DOE Oda Y csh5@u.washington.edu RPE 2006-10-04 PNAS 105, 18543-8 Hydrogen production, Biotechnological 316055 15751 000179_GCAT 174324 639279312 NC_008435 Complete 12x 5505 5026 1 0 64.4 Sanger USA freshwater sediment samples from De Biesbosch and Haren, the Netherlands 12 August 1999 Netherlands 12089030 freshwater sediment samples from the Netherlands Facultative Rod-shaped Mesophile gram- Free living Singles None Soil, Fresh water 25 - 30 Motile Pollutant degrader, Carbon dioxide fixation, Hydrogen production, Nitrogen fixation Phototroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia ambifaria BACTERIAL Burkholderia cepacia AMMD AMMD Burkholderia ambifaria AMMD ATCC BAA-244, LMG 19182 Gc00430 Gi00924 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bamb 2006-09-21 Unpublished Biocontrol, Agricultural 339670 13490 000180_GCAT 681923 165641 637000047 NC_008390-2 Complete 13x 7483 6811 3 1 66.8 Sanger USA Healthy pea plants in Wisconsin in 1985 1985 USA Healthy pea plants in Wisconsin in 1985 Facultative Rod-shaped Nonsporulating Mesophile gram- Free living None Host, Rhizosphere-colonizing, Rhizosphere 30 - 42 Motile Nitrogen fixation, Pollutant degrader Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis OSU18 OSU18 Francisella tularensis subsp. holarctica OSU18 Gc00429 Gi00943 Genome Complete and Published Public BCM-HGSC NIH-NIAID Petrosino J jpetrosi@bcm.tmc.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html FTH 2006-09-25 J Bacteriol 188, 6977-6985 Human Pathogen, Biothreat, Medical 393011 17265 000181_GCAT 250583 637000112 NC_008369 Complete 39x 1895 1967 1 0 32.2 Sanger, 454 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Tularemia Host, Fresh water Nonmotile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Hyphomonadaceae Hyphomonas Hyphomonas neptunium BACTERIAL Hyphomonas neptunium ATCC 15444 ATCC 15444 Hyphomonas neptunium ATCC 15444 ATCC 15444 Yes Gc00428 Gi00302 Genome Complete and Published Public Univ of Georgia, J. Craig Venter Institute NSF Badger J jbadger@tigr.org HNE 2006-09-14 J. Bacteriol 188, 6841-6850 Biotechnological 228405 15721 000182_GCAT 98403 165618 637000135 NC_008358 Complete 3705 3613 1 0 61.9 USA Aerobe Rod-shaped Mesophile gram- Free living None Marine 37 Motile Budding Bacteria Firmicutes Clostridia Clostridiales Syntrophomonadaceae Syntrophomonas Syntrophomonas wolfei BACTERIAL Syntrophomonas wolfei Goettingen, DSM 2245B Goettingen, DSM 2245B Syntrophomonas wolfei subsp. wolfei str. Goettingen DSM 2245B Gc00427 Gi00643 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Swol 2006-09-14 Unpublished Bioremediation, Biotechnological, Hydrogen production, Energy production, Environmental, Carbon cycle 335541 13014 000183_GCAT 157804 154176 637000316 NC_008346 Complete 11x 2936 2697 1 0 44.9 Sanger USA Anaerobe Spiral-shaped Mesophile gram+ None Motile Fatty-acid-oxidizer, Nonphototrophic Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella frigidimarina BACTERIAL Shewanella frigidimarina NCIMB 400 NCIMB 400 Shewanella frigidimarina NCIMB 400 NCIMB 400 Gc00426 Gi00553 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Sfri 2006-09-14 Unpublished Biotechnological 318167 13391 000184_GCAT 47442 171314 637000257 NC_008345 Complete 4845 4323 1 0 41.6 USA North Sea near Aberdeen United Kingdom United Kingdom North Sea near Aberdeen United Kingdom 57.158679 -2.071953 Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Marine 20 - 22 Motile Iron reducer Heterotroph Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Hyphomonadaceae Maricaulis Maricaulis maris BACTERIAL Maricaulis maris MCS10 MCS10 Maricaulis maris MCS10 Gc00425 Gi01017 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Mmar10 2006-09-14 Unpublished Environmental, Bioremediation 394221 17333 000185_GCAT 637000157 NC_008347 Complete 13x 3368 3184 1 0 62.7 Sanger USA Puget Sound in Washington USA Washington 47.609106 -122.569354 Facultative Rod-shaped Nonsporulating Mesophile gram- Free living None Fresh water 20 - 25 Motile Bacteria Proteobacteria Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas eutropha BACTERIAL Nitrosomonas eutropha C91 (C71) C91 (C71) Nitrosomonas eutropha C91 Gc00424 Gi00407 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Neut 2006-09-13 Unpublished Environmental, Biotechnological 335283 13913 000186_GCAT 267213 137518 637000196 NC_008344 Complete 2661 2730 1 2 48.5 USA Aerobe Mesophile gram- Free living None Fresh water Motile Nitrifying, Ammonia-oxidizer, Carbon sequestration Chemolithotroph, Autotroph Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Granulibacter Granulibacter bethesdensis BACTERIAL Granulibacter bethesdensis CGDNIH1 CGDNIH1 Granulibacter bethesdensis CGDNIH1 ATCC BAA-1260, DSM 17861, CGDNIH1, ATCC 25313 Yes Gc00423 Gi01540 Genome Complete and Published Public RML-NIAID, Integrated Genomics Inc NIH Holland SM degreenberg@mail.nih.gov GbCGDNIH1 2006-09-13 J Bacteriol 189, 8727-36 Medical, Human Pathogen 391165 17111 000187_GCAT 689850 637000123 NC_008343 Complete 2-3 Kb Phred/Phrap/Consed 2708 2553 1 0 59 USA 39 year old man with Chronic granulomatous disease Maryland, Bethesda, USA USA 39 year old man with Chronic granulomatous disease Homo sapiens Male 39 Patient with Chronic granulomatous disease Lymph nodes Rod-shaped Mesophile gram- Free living Chronic granulomatous Lymph nodes, Host 35 Bacteria Proteobacteria Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Alkalilimnicola Alkalilimnicola ehrlichii BACTERIAL Alkalilimnicola ehrlichei MLHE-1 MLHE-1 Alkalilimnicola ehrlichei MLHE-1 ATCC BAA-1101, DSM 17681 Yes Gc00422 Gi00971 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Mlg 2006-09-12 Unpublished Biotechnological, Environmental 187272 15763 000188_GCAT 689443 172488 637000005 NC_008340 Complete 12x 3275 2994 1 0 67.5 Sanger USA bottom water from alkaline, hypersaline Mono Lake, CA September, 2001 USA Mono Lake in California 37.986853 -119.045711 Anaerobe Mesophile gram- Free living None Fresh water Arsenic metabolizer, Arsenite oxidizer Chemolithotroph, Chemoautotroph Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella sp. MR-4 BACTERIAL Shewanella sp. MR-4 MR-4 Shewanella sp. MR-4 Gc00421 Gi00968 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Shewmr 2006-09-01 Unpublished Biotechnological 60480 13904 000189_GCAT 166706 637000259 NC_008321 Complete 11x 4706 4213 1 0 47 Sanger USA Sea-water; oxic zone; 16oC; 5 m depth in the Black sea Sea-water; oxic zone; 16oC; 5 m depth in the Black sea Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Marine Motile Heterotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium difficile BACTERIAL Clostridium difficile 630 (epidemic type X) 630 (epidemic type X) Clostridium difficile 630 ATCC BAA-1382 Gc00420 Gi00158 Genome Complete and Published Public Sanger Institute Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ CD 2006-07-01 Nature Genetics 38(7):779-86 Animal Pathogen, Swine Pathogen, Medical, Human Pathogen 272563 78 000190_GCAT 692637 630 640069308 NC_009089 Complete 4290 3989 1 1 29 United Kingdom clincal isolate Switzerland Switzerland Homo sapiens Patient Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Peritonitis, Colitis, Diarrhea Host Motile Pathogen Chemoorganotroph Eukaryota Chlorophyta Prasinophyceae Mamiellales Ostreococcus Ostreococcus tauri EUKARYAL Ostreococcus tauri OTH95 OTH95 Ostreococcus tauri OTH95 Gc00419 Gi00579 Genome Complete and Published Public Laboratoire Arago Moreau H h.moreau@obs-banyuls.fr 2006-08-01 PNAS 103, 11647-52 Evolutionary 70448 12912 000191_GCAT 0 CR954201 Complete Level 2: High-Quality Draft 12560 7892 20 0 0 Sanger France Thau lagoon in France France Thau lagoon in France 43.20 3.3150 Coccus-shaped Mesophile None Fresh water Carbon fixation, Small Photosynthetic Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria welshimeri BACTERIAL Listeria welshimeri SLCC5334 SLCC5334 6b Listeria welshimeri serovar 6b str. SLCC5334 CIP 8149, SLCC 5334, DSM 20650, ATCC 35897 Gc00418 Gi00334 Genome Complete and Published Public Univ of Giessen, Univ of Wuerzburg BMBF Chakraborty T Trinad.Chakraborty@mikrobio.med.uni-giessen.de lwe 2006-10-25 J Bacteriol 188, 7405-15 Medical 386043 13443 000192_GCAT 14895 187374 639633035 NC_008555 Complete 2814 2948 1 0 36.4 Germany Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles, Chains None Fresh water, Soil, Food Motile Non-Pathogen Chemoorganotroph Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Rhodobacter Rhodobacter sphaeroides BACTERIAL Rhodobacter sphaeroides 2.4.1 2.4.1 Rhodobacter sphaeroides 2.4.1 ATCC BAA-808 No Gc00417 Gi00508 Genome Complete and Published Public Univ of Texas - Houston, BCM-HGSC, DOE Joint Genome Institute DOE, NIH-NIGMS Kaplan S Samuel.Kaplan@uth.tmc.edu http://mmg.uth.tmc.edu/faculty/faculty-samuel-kaplan.html RSP 2005-10-07 Unpublished Bioremediation, Environmental, Energy production, Biotechnological 272943 56 000193_GCAT 240801 5796 640069327 NC_007494, NC_007493 Complete 4131 4372 2 3 68.8 USA Facultative Rod-shaped Mesophile gram- Free living Chains None 25 - 35 Motile Photosynthetic Bacteria Cyanobacteria Chroococcales Synechococcus Synechococcus sp. CC9311 BACTERIAL Prochlorococcus sp. CC9311 CC9311 Synechococcus sp. CC9311 CCMP 2515 Gc00416 Gi00638 Genome Complete and Published Public UCSD, J. Craig Venter Institute NSF Palenik BP bpalenik@ucsd.edu sync 2006-09-01 PNAS 103, 13555-9 Ocean carbon cycle, Biotechnological 64471 12530 000194_GCAT 529133 172726 637000309 NC_008319 Complete 2606 2951 1 0 52 USA Oligotrophic edge of the California Current at 95m depth in 1993, CalCOFI cruise 93204, station 83.110 Isolated by Palenik,B 1993 USA Oligotrophic edge of the California Current at 95m depth in 1993 31.9001 -124.1668 95 meters Mesophile 1 um 1 - 2 um gram- Free living None Marine Motile Photoautotroph, Photosynthetic Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella sp. MR-7 BACTERIAL Shewanella sp. MR-7 MR-7 Shewanella sp. MR-7 Gc00415 Gi00969 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Shewmr 2006-09-01 Unpublished Biotechnological 60481 13903 000195_GCAT 9073 637000260 NC_008322 Complete 9x 4792 4289 1 1 47 Sanger USA Sea-water; anoxic zone; high NO3; 60 m depth in the Black sea Sea-water; anoxic zone; high NO3; 60 m depth in the Black sea Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Marine Motile Heterotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus necator BACTERIAL Ralstonia eutropha H16 H16 Ralstonia eutropha H16 ATCC 17699 No Gc00414 Gi00499 Genome Complete and Published Public Humboldt Univ, Berlin, Univ of Munster, Georg-August-Univ Goettingen BMBF Friedrich B http://www.biologie.hu-berlin.de/~microbio/home.html 2006-08-30 Unpublished Bioplastic producer, Environmental, Biotechnological, Bioremediation 381666 13603 000196_GCAT 122962 173855 640427136 NC_008313, NC_008314 Complete 6964 6709 2 0 66 Germany Sludge Sludge Aerobe Rod-shaped Mesophile gram- Free living None Soil, Fresh water 30 Motile Heterotroph, Chemoautotroph Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Histophilus Histophilus somni BACTERIAL Haemophilus somnus 129PT 129PT Haemophilus somnus 129PT Gc00413 Gi00286 Genome Complete and Published Public Virginia Tech, DOE Joint Genome Institute DOE Inzana T http://www.vetmed.vt.edu/Organization/Departments/DBSP/Faculty/tominzana/Tinzana.html 2006-08-22 J Bacteriology 189, 1890-8 Animal Pathogen, Medical, Human Pathogen, Cattle Pathogen 205914 322 000197_GCAT 170898 637000127 NC_008309 Complete 2007 1929 1 1 37 USA Facultative Rod-shaped Mesophile gram- Free living Thrombotic-meningoencephalitis, Septicemia, Pneumonia, Abortion, Constriction of blood vessels, Arthritis, Myocarditis Host 35 - 37 Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Frankiaceae Frankia Frankia alni BACTERIAL Frankia alni ACN14a ACN14a Frankia alni ACN14a Gc00412 Gi00257 Genome Complete and Published Public Genoscope Choisne N choisne@genoscope.cns.fr FRA 2006-08-03 Genome Res 17, 7-15 Biotechnological 326424 17403 000198_GCAT 637000115 NC_008278 Complete 7497 6786 1 0 72 France Green alder growing in Tadoussac Canada Canada Green alder growing in Tadoussac Canada 48.148312 -69.717963 Plants Aerobe Filament-shaped Sporulating Mesophile gram+ Symbiotic Mutualistic None Soil, Host Nonmotile Nitrogen fixation, Non-Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Oceanospirillales Alcanivoracaceae Alcanivorax Alcanivorax borkumensis BACTERIAL Alcanivorax borkumensis SK2 SK2 Alcanivorax borkumensis SK2 CIP 105606, CECT 5355, DSM 11573, ATCC 700651 Yes Gc00411 Gi00022 Genome Complete and Published Public Bielefeld Univ BMBF Puhler A puehler@genetik.uni-bielefeld.de ABO 2006-07-23 Unpublished Oil removal, Biotechnological 393595 13005 000199_GCAT 267984 244434 637000004 NC_008260 Complete 3120 2857 1 0 54.7 Germany Seawater sediment sample in the Isle of Borkum, North Sea 1991 Seawater sediment sample in the North Sea 53.598161 6.702723 Aerobe Rod-shaped Mesophile Halophile gram- Free living None Marine Nonmotile Hydrocarbon degrading Oligotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Shigella Shigella flexneri BACTERIAL Shigella flexneri 5b 8401 8401 Shigella flexneri 5 str. 8401 Gc00410 Gi01501 Genome Complete and Published Public Microbial Genome Center, Beijing Chinese Ministry of Public Health Nie H nh121212@hotmail.com SFV 2006-07-21 BMC Genomics 7, 173 Biothreat, Medical, Human Pathogen 373384 16375 000200_GCAT 168839 637000265 NC_008258 Complete 4574 4411 1 0 50 China Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Shigellosis, Dysenteria, Food poisoning Host 37 Motile Pathogen Chemoorganotroph Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Haloquadratum Haloquadratum walsbyi ARCHAEAL Haloquadratum walsbyi HBSQ001, DSM 16790 HBSQ001, DSM 16790 Haloquadratum walsbyi DSM 16790 DSM 16790 No Gc00409 Genome Complete and Published Public Max Planck Institute Bolhuis H h.bolhuis@rug.nl HQ 2006-07-24 BMC Genomics 7, 169 Evolutionary, Biotechnological 362976 17185 000201_GCAT 681614 169691 637000129 NC_008212 Complete 6.5x 3132 2920 1 1 47.9 Sanger Germany Spanish solar saltern Spain Spanish solar saltern Square-shaped Mesophile Halophile gram- Free living None Solar saltern, Fresh water Nonmotile Phototroph Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia afzelii BACTERIAL Borrelia afzelii PKo PKo Borrelia afzelii PKo Gc00408 Genome Complete and Published Public Fritz Lipmann Institute BAPKO 2006-08-02 Unpublished Medical, Human Pathogen 390236 17057 000202_GCAT 167322 639633011 NC_008277 Complete 905 1293 1 8 28.3 Germany Skin lesion from a Lyme disease patient in Europe in 1993 1993 Skin lesion from a Lyme disease patient in Europe in 1993 Homo sapiens Patient with Lyme disease Skin Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Acrodermatitis chronica atrophicans, Lyme disease Host Motile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Nocardiaceae Rhodococcus BACTERIAL Rhodococcus sp RHA1 RHA1 Rhodococcus jostii RHA1 Gc00407 Gi00996 Genome Complete and Published Public Genome British Columbia Genome Canada, Genome BC Eltis L http://www.microbiology.ubc.ca/leltis/index.htm RHA1 2006-07-31 PNAS 103, 15582-7 Environmental, Ecological 101510 13693 000203_GCAT 173649 637000234 NC_008268 Complete 7804 9233 1 3 67.5 Canada Soil contaminated with gamma-hexachlorocyclohexane in Japan Japan Soil contaminated with gamma-hexachlorocyclohexane in Japan Aerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Filaments None Soil 30 Nonmotile PCB degrading Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium perfringens BACTERIAL Clostridium perfringens ATCC 13124 ATCC 13124 Clostridium perfringens ATCC 13124 DSM 756, ATCC 13124 Yes Gc00406 Gi00160 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Paulsen I http://www.bio.jhu.edu/Directory/Faculty/Paulsen/Default.html CPF 2006-07-28 Genome Res 16, 1031-40 Animal Pathogen, Biothreat, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 195103 304 000204_GCAT 7940 73346 637000077 NC_008261 Complete 10.29X 3256 3129 1 0 28.4 USA Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Singles, Pairs Gas gangrene, Food poisoning, Dysenteria, Enterocolitis, Enterotoxemia Soil, Host 37 Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium perfringens BACTERIAL Clostridium perfringens SM101 SM101 Clostridium perfringens SM101 Gc00405 Gi00161 Genome Complete and Published Public J. Craig Venter Institute Paulsen I http://www.bio.jhu.edu/Directory/Faculty/Paulsen/Default.html CPR 2006-07-28 Genome Res 16, 1031-40 Animal Pathogen, Biothreat, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 289380 12521 000205_GCAT 166191 642555126 NC_008262 Complete 9.4X 2897 2702 1 3 28 USA Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Gas gangrene, Food poisoning, Dysenteria, Enterocolitis, Enterotoxemia Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella avium BACTERIAL Bordetella avium 197N 197N Bordetella avium 197N ATCC BAA-1003 Gc00404 Gi00082 Genome Complete and Published Public Sanger Institute, Drew Univ NSF, USDA Temple L ltemple@drew.edu BAV 2006-02-01 J Bacteriol 188, 6002-15 Animal Pathogen, Poultry Pathogen, Medical 360910 27 000206_GCAT 692383 281797 641522607 AM167904, NC_010645 Complete 3732 3465 1 0 61.6 International Spontaneous nalidixic, acid-resistant derivative of virulent strain 197 which was isolated from an infected turkey Spontaneous nalidixic acid-resistant derivative of virulent strain 197 Aerobe Rod-shaped Mesophile gram- Free living Respiratory infection, Bordetellosis, Coryza Host 35 - 37 Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O6:K15:H31 536 (UPEC) 536 (UPEC) O6:K15:H31 Escherichia coli 536 Gc00402 Gi00244 Genome Complete and Published Public Univ of Wuerzburg, Goettingen Genomics Laboratory Bruggemann H hbruegg@g2l.bio.uni-goettingen.de ECP 2006-07-13 PNAS 103, 12879-84 Medical, Human Pathogen 362663 16235 000207_GCAT 162759 637000104 NC_008253 Complete 4938 4786 1 0 50.5 Germany Patient with acute pyelonephritis UPEC Pathotype Patient with acute pyelonephritis Homo sapiens Patient with acute pyelonephritis Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Pyelonephritis, Urinary infection Host, Human intestinal microflora Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis tularensis FSC 198 FSC 198 Francisella tularensis subsp. tularensis FSC198 Gc00401 Gi01182 Genome Complete and Published Public Univ of Birmingham UK Department of Health Pallen M m.pallen@bham.ac.uk FTF 2006-07-12 PLoS ONE 2, e352 Animal Pathogen, Medical, Human Pathogen, Biothreat 393115 17375 000208_GCAT 637000113 NC_008245 Complete 1892 1875 1 0 32.3 United Kingdom Slovakia from a mite Slovakia Slovakia from a mite Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Pneumonia, Septicemia Host, Fresh water Nonmotile Pathogen Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Flexibacteraceae Cytophaga Cytophaga hutchinsonii BACTERIAL Cytophaga hutchinsonii ATCC 33406 ATCC 33406 Cytophaga hutchinsonii ATCC 33406 ATCC 33406 Yes Gc00400 Gi00185 Genome Complete and Published Public DOE Joint Genome Institute, Univ of Wisconsin Milwaukee DOE Bruce D microbes@cuba.jgi-psf.org CHU 2006-07-12 Unpublished Biotechnological 269798 54 000209_GCAT 109271 163626 637000087 NC_008255 Complete 4433 3880 1 0 39 USA Aerobe Rod-shaped Mesophile gram- Free living None Soil, Fresh water 30 Motile Cellulose degrader, Chitin degradation Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. BNC1 BACTERIAL Mesorhizobium sp. BNC1 BNC1 Mesorhizobium sp. BNC1 DSM 6780 Gc00399 Gi00353 Genome Complete and Published Public PNNL, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Meso 2006-07-11 Unpublished Biotechnological 266779 10690 000210_GCAT 129415 637000160 NC_008254 Complete 4412 4744 1 3 61.1 USA Mixed-culture enriched from sewage using the chelating agent EDTA most probably the strain has to be assigned to a new genus Germany Mixed-culture enriched from sewage using the chelating agent EDTA Aerobe Rod-shaped Mesophile gram- Symbiotic Mutualistic None Host Motile EDTA degrading, Nitrogen fixation Bacteria Cyanobacteria Oscillatoriales Trichodesmium Trichodesmium erythraeum BACTERIAL Trichodesmium erythraeum IMS101 IMS101 sea sawdust Trichodesmium erythraeum IMS101 CCMP 1985 No Gc00398 Gi00666 Genome Complete and Published Public DOE Joint Genome Institute, Woods Hole Oceanographic Institute DOE Bruce D microbes@cuba.jgi-psf.org Tery 2006-07-06 Unpublished Environmental, Biotechnological 203124 318 000211_GCAT 527924 137926 637000329 NC_008312 Complete 7750 5167 1 0 34.3 USA coastal waters, North Carolina USA Isolated by Prufert-Bebout,L USA coastal waters, North Carolina USA 35.0000 -76.0000 Aerobe Filament-shaped Mesophile 6 um 10 - 12 um gram- Free living None Marine Motile Nitrogen fixation Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter acinonychis BACTERIAL Helicobacter acinonychis Sheeba Sheeba Helicobacter acinonychis str. Sheeba Gc00403 Genome Complete and Published Public Penn State Univ Schuster SC scs@bx.psu.edu 2006-06-28 Unpublished Animal Pathogen, Medical, Feline Pathogen 382638 17251 000212_GCAT 637000130 NC_008229 Complete 1553 1666 1 1 38.2 USA Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric lesions Host 37 Motile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Rhodospirillaceae Rhodospirillum Rhodospirillum rubrum BACTERIAL Rhodospirillum rubrum ATCC 11170 ATCC 11170 Rhodospirillum rubrum ATCC 11170 ATCC 11170 Yes Gc00396 Gi00724 Genome Complete and Published Public Univ of Wisconsin, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Rru 2006-02-09 Unpublished Biotechnological 269796 58 000213_GCAT 53733 4508 637000241 NC_007643 Complete 4352 3987 1 1 65.4 USA Facultative Spiral-shaped Mesophile gram- Free living None 25 - 30 Motile Nitrogen fixation Lithotroph, Phototroph Bacteria Firmicutes Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Moorella Moorella thermoacetica BACTERIAL Moorella thermoacetica ATCC39073 ATCC39073 Moorella thermoacetica ATCC 39073 ATCC 39073 Gc00397 Gi00376 Genome Complete and Published Public Univ of Nebraska, DOE Joint Genome Institute DOE Ragsdale S sragsdale1@unl.edu Moth 2006-02-23 Environ Microbiol. 10, 2550-73 Environmental, Biotechnological 264732 10648 000214_GCAT 111654 143793 637000167 NC_007644 Complete 2628 2669 1 0 55.8 USA Bottom of stagnant ponds Bottom of stagnant ponds Anaerobe Sporulating Thermophile gram+ Free living None Ponds, Fresh water 58 Acetogen, Carbon dioxide fixation Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas atlantica BACTERIAL Pseudoalteromonas atlantica T6c T6c Pseudoalteromonas atlantica T6c ATCC BAA-1087 Gc00395 Gi00952 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Patl 2006-06-14 Unpublished Environmental, Bioremediation 342610 13454 000215_GCAT 493548 160309 637000216 NC_008228 Complete 9.6x 5187 4474 1 0 44 Sanger USA Lesions on crabs with shell disease Lesions on crabs with shell disease Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Fresh water Motile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus delbrueckii BACTERIAL Lactobacillus delbrueckii bulgaricus ATCC 11842 ATCC 11842 Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 ATCC 11842 Yes Gc00394 Gi00312 Genome Complete and Published Public INRA, Genoscope Danone Vitapole van de Guchte M maarten.vandeguchte@jouy.inra.fr Ldb 2006-06-14 PNAS 103, 9274-9 Biotechnological, Lactic acid production, Food industry 390333 16871 000216_GCAT 13536 160034 637000139 NC_008054 Complete 1864 2243 1 0 49.7 France Bulgarian yogurt in 1919 Bulgarian yogurt in 1919 Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Mesophile gram+ Free living Chains None Intestinal microflora Nonmotile Probiotic Bacteria Actinobacteria Actinobacteria (class) Rubrobacterales Rubrobacteraceae Rubrobacter Rubrobacter xylanophilus BACTERIAL Rubrobacter xylanophilus DSM 9941 DSM 9941 Rubrobacter xylanophilus DSM 9941 DSM 9941 Yes Gc00393 Gi00518 Genome Complete and Published Public Louisiana State Univ, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Rxyl 2006-06-09 Unpublished Biotechnological 266117 10670 000217_GCAT 154720 160679 637000248 NC_008148 Complete 3225 3330 1 0 70.4 USA Thermally polluted industrial runoff in the United Kingdom UK Thermally polluted industrial runoff in the United Kingdom Aerobe Rod-shaped Nonsporulating Thermophile gram+ Free living None Soil 60 Nonmotile Radiation resistant Heterotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium sp. MCS BACTERIAL Mycobacterium sp MCS MCS Mycobacterium sp. MCS Gc00392 Gi01023 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Mmcs 2006-06-09 Unpublished Biotechnological 164756 15762 000218_GCAT 160932 637000171 NC_008146 Complete 11x 5705 5752 1 1 68 Sanger USA Creosote-contaminated soil from the Champion International Superfund site in Libby Montana USA Libby Montana 48.38828 -115.55581 Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles None Soil, Creosote-contaminated soil Nonmotile PAH-degrading Chemoorganotroph Bacteria Proteobacteria Deltaproteobacteria Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus BACTERIAL Myxococcus xanthus DK 1622 DK 1622 Myxococcus xanthus DK 1622 Gc00391 Gi00395 Genome Complete and Published Public Monsanto, J. Craig Venter Institute NSF Nierman WC wnierman@tigr.org MXAN 2006-06-07 Unpublished Biotechnological 246197 1421 000219_GCAT 355323 637000186 NC_008095 Complete 9139 7460 1 0 68.9 USA Obligate aerobe Rod-shaped Sporulating Mesophile gram- Free living None Soil 20 - 30 Motile Chemoorganotroph Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPAG1 HPAG1 Helicobacter pylori HPAG1 Gc00390 Genome Complete and Published Public Washington Univ HPAG1 2006-06-06 PNAS 103, 9999-10004 Medical, Human Pathogen 357544 16183 000220_GCAT 637000133 NC_008086 Complete 1596 1628 1 1 39 Sweden Swedish patient with chronic atrophic gastritis Sweeden Swedish patient with chronic atrophic gastritis Homo sapiens Patient with chronic atrophic gastritis Gastrointestinal tract Stomach Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Host, Human stomach 37 Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cenocepacia BACTERIAL Burkholderia cenocepacia AU 1054 AU 1054 Burkholderia cenocepacia AU 1054 Gc00389 Gi00805 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D pmrichardson@lbl.gov Bcen 2006-06-01 Unpublished Medical, Human Pathogen 331271 13919 000221_GCAT 137522 637000046 NC_008061, NC_008062, NC_008060 Complete 7278 6718 3 0 67 Sanger USA Blood of a patient with CF Blood of a patient with CF Homo sapiens Patient with CF Blood Facultative Rod-shaped Mesophile gram- Free living Pneumonia Host Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Antiqua Antiqua Yersinia pestis Antiqua Gc00388 Genome Complete and Published Public DOE Joint Genome Institute Andersen GL GLAndersen@lbl.gov YPA 2006-06-01 J. Bacteriology 188, 4453-63 Animal Pathogen, Medical, Human Pathogen, Biothreat 360102 16645 000222_GCAT 159714 637000350 NC_008150 Complete 4720 4561 1 3 47.7 USA Soil sample from the Republic of Congo Soil sample from the Republic of Congo Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic and Pneumonic plague Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Nepal516 Nepal516 Yersinia pestis Nepal516 Gc00387 Genome Complete and Published Public DOE Joint Genome Institute Andersen GL GLAndersen@lbl.gov YPN 2006-06-01 J. Bacteriology 188, 4453-63 Animal Pathogen, Medical, Human Pathogen, Biothreat 377628 16646 000223_GCAT 160633 637000353 NC_008149 Complete 4534 4298 1 2 47 USA Soil sample from Nepal Soil sample from Nepal Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic and Pneumonic plague Host Motile Pathogen Heterotroph Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Silicibacter Silicibacter sp. TM1040 BACTERIAL Silicibacter sp. TM1040 TM1040 Ruegeria sp. TM1040 Gc00386 Gi00515 Genome Complete and Published Public Univ of Georgia, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org TM1040 2006-05-22 Unpublished Biotechnological, Environmental 292414 13040 000224_GCAT 159676 637000268 NC_008044 Complete 3200 4034 1 2 60.4 USA culture of the dinoflagellate Pfiesteria piscicida CCMP1830 culture of the dinoflagellate Pfiesteria piscicida CCMP1830 Aerobe Rod-shaped Mesophile gram- Free living None Marine Motile Carbon fixation Phototroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum BACTERIAL Rhizobium leguminosarum bv viciae 3841 3841 viciae Rhizobium leguminosarum bv. viciae 3841 Gc00385 Gi00504 Genome Complete and Published Public Sanger Institute, Univ of York, Univ of East Anglia BBSRC Parkhill J http://www.sanger.ac.uk/Users/parkhill/ 2006-04-26 Genome Biol. 7, R34 Biotechnological, Agricultural 216596 344 000225_GCAT 3841 639633055 NC_008380 Complete Level 6: Finished 5057 7346 1 6 63 United Kingdom United Kingdom Pisum sativum 3888 Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Mutualistic Legume Plants Singles None Root nodule, Host 25 - 30 Motile Non-Pathogen, Nitrogen fixation Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingopyxis Sphingopyxis alaskensis BACTERIAL Sphingopyxis alaskensis RB2256 RB2256 Sphingopyxis alaskensis RB2256 LMG 18877, CCUG 45028, DSM 13593, CIP 106977 Yes Gc00384 Gi00564 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Sala 2006-05-18 Unpublished Environmental, Biotechnological 317655 13907 000226_GCAT 66673 42377 637000271 NC_008048 Complete 3345 3308 1 1 65 USA Resurrection Bay in the Gulf of Alaska Alaska 58.42198 -149.574839 Aerobe Mesophile gram- Free living None Marine Ultramicro size Heterotroph, Oligotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas entomophila BACTERIAL Pseudomonas entomophila L48 L48 Pseudomonas entomophila L48 Gc00383 Gi00823 Genome Complete and Published Public Genoscope, CNRS CNRG Boccard F http://www.cgm.cnrs-gif.fr/coli/ PSEEN 2006-05-11 Nat Biotechnol 24, 673-9 Insect Pathogen, Agricultural 384676 16800 000227_GCAT 112473 637000219 NC_008027 Complete 5888 5274 1 0 64.2 France Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Cellular destruction Wastewater, Fresh water Motile Heterotroph Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Lawsonia Lawsonia intracellularis BACTERIAL Lawsonia intracellularis PHE/MN1-00 PHE/MN1-00 Lawsonia intracellularis PHE/MN1-00 NCTC 12657 Gc00382 Gi00321 Genome Complete and Published Public Univ of Minnesota USDA Kapur V http://www.cvm.umn.edu/departments/vpb/faculty/kapur.htm LI 2006-05-04 Unpublished Medical, Animal Pathogen 363253 183 000228_GCAT 681612 159002 637000145 NC_008011 Complete 1457 1400 1 3 33 USA Intestinal tract Facultative Rod-shaped Mesophile gram- Free living Proliferative enteropathy Host, Intestinal microflora 37 Pathogen, Obligate intracellular Bacteria Deinococcus-Thermus Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis BACTERIAL Deinococcus geothermalis DSM11300 DSM11300 Deinococcus geothermalis DSM 11300 DSM11300 Yes Gc00381 Gi00191 Genome Complete and Published Public USUHS, DOE Joint Genome Institute DOE Daly MJ mdaly@usuhs.mil Dgeo 2006-05-04 PLoS ONE 2, e955 Environmental, Bioremediation 319795 13423 000229_GCAT 150388 130529 641228488 NC_008025 Complete 2467 3207 1 1 66 USA Hot spring at Agnano in Naples Italy Italy Hot spring at Agnano in Naples Italy 40.833568 14.162399 Aerobe Coccus-shaped Thermophile gram- Free living None Fresh water, Hot spring 47 Nonmotile Radiation resistant Bacteria Acidobacteria Candidatus Koribacter Candidatus Koribacter versatilis BACTERIAL Korebacter versatilis Ellin 345 Ellin 345 Acidobacteria bacterium Ellin345 Gc00380 Gi01488 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Acid345 2006-05-04 Appl Environ Microbiol. 75, 2046-56 Biotechnological, Bioremediation, Environmental 204669 15771 000230_GCAT 72400 637000001 NC_008009 Complete 9x 5650 4882 1 0 58.4 Sanger USA soil of an Australian pasture Australia soil of an Australian pasture Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Soil, Fresh water Nonmotile Acidophile Oligotroph, Chemoorganotroph, Heterotroph Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes MGAS9429 MGAS9429 M12 Flesh eating bacteria Streptococcus pyogenes MGAS9429 ATCC BAA-1315 Gc00379 Gi01506 Genome Complete and Published Public RML-NIAID, Integrated Genomics Inc NIH Musser JM jmmusser@tmh.tmc.edu http://www.niaid.nih.gov/dir/labs/lhbp/musser.htm MGAS9429 2006-05-04 PNAS 103, 7059-64 Medical, Human Pathogen 370551 16363 000231_GCAT 692592 158186 637000300 NC_008021 Complete 1836 1970 1 0 38 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Rheumatic fever Nasopharyngeal microflora, Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes MGAS10270 MGAS10270 M2 Flesh eating bacteria Streptococcus pyogenes MGAS10270 ATCC BAA-1063 Gc00378 Gi01502 Genome Complete and Published Public RML-NIAID, Integrated Genomics Inc NIH Musser JM jmmusser@tmh.tmc.edu MGAS10270 2006-05-04 PNAS 103, 7059-64 Medical, Human Pathogen 370552 16364 000232_GCAT 692416 158517 637000292 NC_008022 Complete 1928 2070 1 0 38 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Rheumatic fever Nasopharyngeal microflora, Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes MGAS2096 MGAS2096 M12 Flesh eating bacteria Streptococcus pyogenes MGAS2096 ATCC BAA-1065 Gc00377 Gi01504 Genome Complete and Published Public RML-NIAID, Integrated Genomics Inc NIH Musser JM jmmusser@tmh.tmc.edu MGAS2096 2006-05-04 PNAS 103, 7059-64 Medical, Human Pathogen 370553 16365 000233_GCAT 692421 157093 637000295 NC_008023 Complete 1860 1981 1 0 38 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Rheumatic fever Nasopharyngeal microflora, Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes MGAS10750 MGAS10750 M4 Flesh eating bacteria Streptococcus pyogenes MGAS10750 ATCC BAA-1066 Gc00376 Gi01503 Genome Complete and Published Public RML-NIAID, Integrated Genomics Inc NIH Musser JM jmmusser@tmh.tmc.edu MGAS10750 2006-05-04 PNAS 103, 7059-64 Medical, Human Pathogen 370554 16366 000234_GCAT 692424 158495 637000294 NC_008024 Complete 1937 2062 1 0 38 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Rheumatic fever Nasopharyngeal microflora, Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Candidatus Baumannia cicadellinicola BACTERIAL Baumannia cicadellinicola Hc Hc Baumannia cicadellinicola str. Hc (Homalodisca coagulata) Gc00375 Gi00076 Genome Complete and Published Public J. Craig Venter Institute Eisen J jaeisen@ucdavis.edu BCI 2006-04-27 PLoS Biology 4, e188 Biotechnological 374463 12513 000235_GCAT 157716 637000029 NC_007984 Complete 686 695 1 0 33.2 USA Red portion of the bacteriome from Homalodisca coagulata adults collected in a lemon orchard Red portion of the bacteriome from Homalodisca coagulata adults collected in a lemon orchard Homalodisca coagulata Mesophile gram- Free living None Endosymbiont, Host, Insect endosymbiont Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus metallidurans BACTERIAL Cupriavidus metallidurans CH34 CH34 Ralstonia metallidurans CH34 CCRC 17470, CCUG 13724, BCRC 17470, ATCC 43123, DSM 2839 Yes Gc00374 Gi00501 Genome Complete and Published Public Brookhaven Natl Lab, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Rmet 2006-04-27 Unpublished Environmental, Bioremediation 266264 250 000236_GCAT 124760 158578 637000230 NC_007973, NC_007974 Complete 6508 6500 2 2 63 USA sedimentation pond in a zinc factory, Belgium Belgium Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Soil, Fresh water 30 Motile Metal resistant Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Psychrobacter Psychrobacter cryohalolentis BACTERIAL Psychrobacter cryohalolentis K5 K5 Psychrobacter cryohalolentis K5 VKM B-2378, DSM 17306 Yes Gc00373 Gi00809 Genome Complete and Published Public Michigan State Univ, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Pcryo 2006-04-18 Unpublished Biotechnological 335284 13920 000237_GCAT 690313 157085 637000227 NC_007969 Complete 11x 3059 2641 1 1 42.3 Sanger USA Saline liquid found 11-24 m below the surface within a forty thousand-year-old Siberian permafrost at the Kolyma-Indigirka lowland in Siberia Russia Saline liquid found 11-24 m below the surface within a forty thousand-year-old Siberian permafrost at the Kolyma-Indigirka lowland in Siberia 11-24 meters Aerobe Rod-shaped Psychrophile Halotolerant gram- Free living None Fresh water Nonmotile Radiation resistant Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bradyrhizobiaceae Nitrobacter Nitrobacter hamburgensis BACTERIAL Nitrobacter hamburgensis X14 X14 Nitrobacter hamburgensis X14 LMG 19028, DSM 10229, NCIMB 13809 Yes Gc00372 Gi00405 Genome Complete and Published Public DOE Joint Genome Institute, Oregon State Univ DOE Bruce D microbes@cuba.jgi-psf.org Nham 2006-04-11 Appl Environ Microbiol. 74, 2852-63 Biotechnological 323097 13473 000238_GCAT 303234 156705 637000192 NC_007964 Complete 4406 4799 1 3 61 USA Soil Soil Aerobe Rod-shaped Mesophile gram- Free living None Soil Motile Nitrifying Lithoautotroph, Chemolithoautotroph Bacteria Proteobacteria Gammaproteobacteria Oceanospirillales Halomonadaceae Chromohalobacter Chromohalobacter salexigens BACTERIAL Chromohalobacter salexigens 1H11, DSM 3043 1H11, DSM 3043 Chromohalobacter salexigens DSM 3043 DSM 3043 Yes Gc00371 Gi00151 Genome Complete and Published Public DOE Joint Genome Institute, Purdue Univ, Hiram College DOE Bruce D microbes@cuba.jgi-psf.org Csal 2006-04-11 Unpublished Bioremediation, Environmental, Biotechnological 290398 12636 000239_GCAT 158279 156938 637000075 NC_007963 Complete 12x 3696 3493 1 0 63 Sanger USA "Solar salt facility, Netherlands Antilles" Netherlands Solar salt facility, Netherlands Antilles Facultative Rod-shaped Nonsporulating Mesophile Halophile gram- Free living None Solar saltern, Fresh water 37 Motile Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bradyrhizobiaceae Rhodopseudomonas Rhodopseudomonas palustris BACTERIAL Rhodopseudomonas palustris BisB5 BisB5 Rhodopseudomonas palustris BisB5 Gc00370 Gi00958 Genome Complete and Published Public DOE Joint Genome Institute, Univ of Washington DOE Bruce D microbes@cuba.jgi-psf.org RPD 2006-04-10 PNAS 105, 18543-8 Biotechnological, Hydrogen production, Energy production 316057 15749 000240_GCAT 156594 637000238 NC_007958 Complete 11x 4892 4549 1 0 64 Sanger USA freshwater sediment samples from De Biesbosch and Haren, the Netherlands 12 August 1999 Netherlands 12089030 freshwater sediment samples from De Biesbosch and Haren, the Netherlands Facultative Rod-shaped Mesophile gram- Free living Singles None Soil, Fresh water 25 - 30 Motile Pollutant degrader, Carbon dioxide fixation, Hydrogen production, Nitrogen fixation Phototroph Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella denitrificans BACTERIAL Shewanella denitrificans OS217 OS217 Shewanella denitrificans OS217 LMG 21692, DSM 15013 Yes Gc00369 Gi00552 Genome Complete and Published Public PNNL, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Sden 2006-04-10 Unpublished Biotechnological 318161 13390 000241_GCAT 303781 130432 637000256 NC_007954 Complete 15x 4545 4023 1 0 45.1 Sanger USA Gotland Deep an anoxic basin in the central Baltic Sea in 1986 from a depth of 120-130m 1986 Gotland Deep an anoxic basin in the central Baltic Sea in 1986 from a depth of 120-130m Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Marine 20 - 25 Motile Denitrifying Heterotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Polaromonas Polaromonas sp. JS666 BACTERIAL Polaromonas sp. JS666 JS666 Polaromonas sp. JS666 ATCC BAA-500 Gc00368 Gi00710 Genome Complete and Published Public DOE Joint Genome Institute, Cornell Univ DOE Bruce D microbes@cuba.jgi-psf.org Bpro 2006-04-10 Appl Environ Microbiology 74, 6405-16 Environmental, Bioremediation 296591 13121 000242_GCAT 352284 131237 637000208 NC_007948 Complete 12x 5200 5673 1 2 62.5 Sanger USA Sediment contaminated with cis-dichloroethane Sediment contaminated with cis-dichloroethane Aerobe Rod-shaped Mesophile gram- Free living None Fresh water 20 Nonmotile Bacteria Proteobacteria Betaproteobacteria Methylophilales Methylophilaceae Methylobacillus Methylobacillus flagellatus BACTERIAL Methylobacillus flagellatus KT KT Methylobacillus flagellatus KT Gc00367 Gi00368 Genome Complete and Published Public DOE Joint Genome Institute, Univ of Washington DOE Bruce D microbes@cuba.jgi-psf.org Mfla 2006-04-10 J Bacteriology 189, 4020-7 Bioremediation, Biotechnological, Wastewater treatment, Environmental, Energy production 265072 10647 000243_GCAT 302997 156646 637000165 NC_007947 Complete 14x 2971 2874 1 0 55.8 Sanger USA Activated sludge found at the wastewater treatment plant in Moscow Russia Russia Activated sludge found at the wastewater treatment plant in Moscow Russia 55.755786 37.617633 Aerobe Rod-shaped Mesophile gram- Free living None Sludge 30 - 42 Motile Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanococcoides Methanococcoides burtonii ARCHAEAL Methanococcoides burtonii DSM6242 DSM6242 Methanococcoides burtonii DSM 6242 DSM 6242 Yes Gc00366 Gi00354 Genome Complete and Published Public DOE Joint Genome Institute, UMBI DOE Bruce D microbes@cuba.jgi-psf.org Mbur 2006-04-10 ISME Journal Epub Biotechnological, Energy production, Carbon cycle 259564 9634 000244_GCAT 159855 156789 637000161 NC_007955 Complete 19x 2575 2555 1 0 40.8 Sanger USA Anoxic hypolimnion of Ace Lake Antarctica Anoxic hypolimnion of Ace Lake Antarctica -68.479167 -78.183611 Anaerobe Nonsporulating Psychrophile gram- Free living None Fresh water, Antarctic 1.7 - 29.5 Motile Methanogen Lithotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia xenovorans BACTERIAL Burkholderia xenovorans (fungorum) LB400 LB400 Burkholderia xenovorans LB400 NRRL B-18064 Gc00365 Gi00107 Genome Complete and Published Public Michigan State Univ, DOE Joint Genome Institute DOE Aerts A alaerts@lbl.gov Bxe 2006-04-10 PNAS 103, 15280-7 Agricultural, Bioremediation, Plant Pathogen, Human Pathogen, Medical, Environmental 266265 254 000245_GCAT 374301 156851 637000053 NC_007952 Complete 9279 9119 3 0 62 USA PCB-containing landfill near in upper New York USA PCB-containing landfill near in upper New York Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Opportunistic infection Soil 30 Motile PCB degrading Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli UTI89 (UPEC) UTI89 (UPEC) Escherichia coli UTI89 Gc00364 Genome Complete and Published Public Washington Univ Gordon J jgordon@wustl.edu UTI 2006-04-05 PNAS 103, 5977-82 Human Gut Microbiome Initiative (HGMI), Medical, Human Pathogen 364106 16259 000246_GCAT 156960 637000109 NC_007946 Complete 8x 5065 5432 1 1 50 Sanger USA Woman with uncomplicated cystitis UPEC Pathotype Woman with uncomplicated cystitis Homo sapiens Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea, Cystitis Host, Human intestinal microflora Motile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia bellii BACTERIAL Rickettsia bellii RML369-C RML369-C Rickettsia bellii RML369-C RML369-C Yes Gc00363 Gi01127 Genome Complete and Published Public CNRS CNRG Raoult D didier.raoult@medecine.univ-mrs.fr RBE 2006-04-05 PLoS Genetics 2, e76 Agricultural 336407 13996 000247_GCAT 303683 637000242 NC_007940 Complete 1522 1488 1 0 31.6 France Embryonated chicken eggs from a triturated pool of unfed adult Dermacentor variabilis ticks collected from vegetation near Fayetteville Arkansas USA in 1966 1966 USA Embryonated chicken eggs from a triturated pool of unfed adult Dermacentor variabilis ticks collected from vegetation near Fayetteville Arkansas USA in 1966 Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Dermacentor variabilis None Endosymbiont, Host, Insect endosymbiont Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus salivarius BACTERIAL Lactobacillus salivarius salivarius UCC118 UCC118 Lactobacillus salivarius UCC118 Gc00362 Gi01470 Genome Complete and Published Public Univ College Cork 2006-04-03 PNAS 103, 6718-23 Food industry, Biotechnological 362948 13280 000248_GCAT 637000143 NC_007929 Complete 1827 2186 1 3 32 Ireland Human gastrointestinal tract Human gastrointestinal tract Homo sapiens Feces Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living None Host, Intestinal microflora Nonmotile Non-Pathogen, Bacteriocins producer Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bradyrhizobiaceae Rhodopseudomonas Rhodopseudomonas palustris BACTERIAL Rhodopseudomonas palustris BisB18 BisB18 Rhodopseudomonas palustris BisB18 Gc00361 Gi00960 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org RPC 2006-03-21 PNAS 105, 18543-8 Hydrogen production, Biotechnological 316056 15750 000249_GCAT 155628 637000237 NC_007925 Complete 10x 5513 5072 1 0 64 Sanger USA freshwater sediment samples from De Biesbosch and Haren, the Netherlands August 1999 Netherlands 12089030 freshwater sediment samples from De Biesbosch and Haren, the Netherlands Facultative Rod-shaped Mesophile gram- Free living Singles None Soil, Fresh water 25 - 30 Motile Pollutant degrader, Carbon dioxide fixation, Hydrogen production, Nitrogen fixation Phototroph Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Saccharophagus Saccharophagus degradans BACTERIAL Saccharophagus degradans 2-40 2-40 Saccharophagus degradans 2-40 ATCC 43961, DSM 17024 Yes Gc00360 Gi00373 Genome Complete and Published Public Univ of Maryland, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Sde 2006-03-17 PLoS Genetics 4, :e1000087 Bioremediation, Environmental, Energy production, Biotechnological 203122 316 000250_GCAT 620898 8406 637000249 NC_007912 Complete 5057 4114 1 0 45 USA Decaying Spartina alterniflora a salt marsh cord grass in the Chesapeake Bay USA Decaying Spartina alterniflora a salt marsh cord grass in the Chesapeake Bay 37.584154 -76.178374 Aerobe Rod-shaped Psychrotolerant gram- Free living None Fresh water Motile Cellulose degrader Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Rhodoferax Rhodoferax ferrireducens BACTERIAL Rhodoferax ferrireducens T118 T118 Rhodoferax ferrireducens T118 ATCC BAA-621, DSM 15236 Yes Gc00359 Gi01084 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Rfer 2006-03-10 Unpublished Generates electricity, Biotechnological 338969 13908 000251_GCAT 303665 75345 637000235 NC_007908 Complete 9x 4712 4606 1 1 59.9 Sanger USA Aquifer sediment collected at a depth of 18 feet Aquifer sediment collected at a depth of 18 feet Anaerobe Rod-shaped Psychrotolerant gram- Free living None 25 Iron reducer Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Desulfitobacterium Desulfitobacterium hafniense BACTERIAL Desulfitobacterium hafniense Y51 Y51 Desulfitobacterium hafniense Y51 Gc00358 Gi00193 Genome Complete and Published Public Kyushu Univ, RITE Yukawa H mmg-lab@rite.or.jp DSY 2006-03-10 J Bacteriol 188, 2262-74 Biotechnological, Bioremediation 138119 16639 000252_GCAT 46485 637000093 NC_007907 Complete 5727 5214 1 0 47.4 Japan Soil contaminated with tetrachloroethene in Japan Japan Soil contaminated with tetrachloroethene in Japan Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains, Pairs, Singles None Soil Motile Dehalogenation Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila felis BACTERIAL Chlamydophila felis Fe/C-56 Fe/C-56 Chlamydophila felis Fe/C-56 Gc00357 Gi00142 Genome Complete and Published Public Yamaguchi Univ, Kitasato Univ JSPS Hattori M hattori@genome.ls.kitasato-u.ac.jp 2006-03-10 DNA Res 13, 15-23 Animal Pathogen, Medical, Feline Pathogen 264202 370 000253_GCAT 155301 637000067 NC_007899 Complete 1166 1095 1 1 39 Japan Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Rhinitis, Respiratory infection, Bronchitis, Pharyngitis, Pneumonia Host 37 Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis holarctica LVS LVS Francisella tularensis subsp. holarctica Gc00356 Gi00254 Genome Complete and Published Public CDC, Lawrence Livermore National Lab Garcia E garcia12@llnl.gov FTL 2006-03-03 Unpublished Biothreat, Medical, Human Pathogen 376619 16421 000254_GCAT 637000111 NC_007880 Complete 1895 2028 1 0 32.2 USA Live vaccine strain was created in the 1960's in the USA Live vaccine strain was created in the 1960's in the USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Tularemia Host, Fresh water Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12- W3110 K12- W3110 Escherichia coli str. K-12 substr. W3110 Gc00355 Gi00241 Genome Complete and Published Public NARA Mori H hmori@gtc.aist-nara.ac.jp 2006-03-01 Unpublished Medical 316407 16351 000255_GCAT 120208 324847 637000110 AC_000091 Complete 4646 4651 1 0 50.8 Japan Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs None Host, Human intestinal microflora 37 Motile Non-Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Jannaschia Jannaschia sp. CCS1 BACTERIAL Jannaschia sp. CCS1 CCS1 Jannaschia sp. CCS1 Gc00354 Gi00785 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Jann 2006-03-01 Unpublished Biotechnological 290400 12733 000256_GCAT 153653 637000137 NC_007802 Complete 4317 4381 1 1 62 USA Water sample taken from the North Sea Water sample taken from the North Sea Obligate aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Marine 30 Nonmotile Phototroph, Heterotroph Archaea Euryarchaeota Methanomicrobia Methanomicrobiales Methanospirillaceae Methanospirillum Methanospirillum hungatei ARCHAEAL Methanospirillum hungateii JF-1 JF-1 Methanospirillum hungatei JF-1 DSM 864 Yes Gc00350 Gi00366 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Mhun 2006-02-21 Unpublished Biotechnological, Energy production, Carbon cycle 323259 13015 000257_GCAT 157033 97855 637000164 NC_007796 Complete 12x 3544 3370 1 0 45.1 Sanger USA Sewage sludge Sewage sludge Anaerobe Nonsporulating Mesophile gram- Free living None Mud 37 Motile Methanogen Lithotroph Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Anaplasmataceae Neorickettsia Neorickettsia sennetsu BACTERIAL Neorickettsia sennetsu Miyayama Miyayama Neorickettsia sennetsu str. Miyayama ATCC VR-367 Yes Gc00352 Gi00403 Genome Complete and Published Public Ohio State Univ, J. Craig Venter Institute Ohio State Univ, NIH-NIAID Rikihisa Y rikihisa.1@osu.edu NSE 2006-02-21 PLoS Genetics 2, E21 Medical, Human Pathogen 222891 357 000258_GCAT 621312 153370 637000191 NC_007798 Complete 859 1009 1 0 41.1 USA 1953 in Japan causing Sennetsu fever 1953 Japan 1953 in Japan causing Sennetsu fever Homo sapiens Blood Aerobe Rod-shaped Mesophile gram- Free living Sennetsu fever Host Pathogen, Intracellular pathogen Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Anaplasmataceae Anaplasma Anaplasma phagocytophilum BACTERIAL Anaplasma phagocytophilum HZ HZ Anaplasma phagocytophilum HZ Gc00351 Gi00029 Genome Complete and Published Public Ohio State Univ, J. Craig Venter Institute NIH Rikihisa Y rikihisa.1@osu.edu APH 2006-02-21 PLoS Genetics 2, E21 Animal Pathogen, Medical, Human Pathogen, Cattle Pathogen 212042 336 000259_GCAT 156880 637000009 NC_007797 Complete 1471 1373 1 0 41.6 USA Patient in New York in 1995 1995 USA Patient in New York in 1995 40.756054 -73.986951 Homo sapiens Aerobe Coccus-shaped Mesophile gram- Free living Endosymbiotic intracellular Parasitic Anaplasmosis Host 37 Pathogen Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia chaffeensis BACTERIAL Ehrlichia chaffeensis Arkansas Arkansas Ehrlichia chaffeensis str. Arkansas Gc00353 Gi00214 Genome Complete and Published Public Ohio State Univ, J. Craig Venter Institute NIH-NIAID Rikihisa Y rikihisa.1@osu.edu ECH 2006-02-21 PLoS Genetics 2, E21 Medical, Human Pathogen 205920 325 000260_GCAT 302444 19195 637000098 NC_007799 Complete 1176 1197 1 0 30.1 USA Patient on an army base in Arkansas in 1990 1990 USA Patient on an army base in Arkansas in 1990 Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Ehrlichiosis, Human monocytic ehrlichiosis Host Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus NCTC 8325 NCTC 8325 Staphylococcus aureus subsp. aureus NCTC 8325 NCTC 8325 Gc00349 Gi00596 Genome Complete and Published Public Univ of Oklahoma MGRI, NIH-NIAID Iandolo JJ john-iandolo@ouhsc.edu SAOUHSC 2006-02-18 Unpublished Animal Pathogen, Cattle Pathogen, Poultry Pathogen, Medical, Human Pathogen 93061 237 000261_GCAT 71249 156092 637000279 NC_007795 Complete 2969 2971 1 0 32.9 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Staphylococcal scarlet fever, Toxic-shock syndrome Host 30 - 37 Nonmotile Pathogen Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium aromaticivorans BACTERIAL Novosphingobium aromaticivorans DSM 12444 (F199) DSM 12444 (F199) Novosphingobium aromaticivorans DSM 12444 DSM 12444 Yes Gc00348 Gi00562 Genome Complete and Published Public PNNL, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Saro 2006-02-10 Unpublished Animal Pathogen, Medical, Human Pathogen, Biotechnological 279238 204 000262_GCAT 44778 152367 640427126 NC_007794 Complete 3561 4097 1 2 65.2 USA 410m depth from a borehole sample that was drilled at the Savannah River Site in South Carolina USA Savannah River Site in South Carolina Obligate aerobe Rod-shaped Mesophile gram- Free living Death of coral reefs Fresh water, Soil, Host Motile Degrades aromatic hydrocarbons Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus MRSA USA300, FPR3757 MRSA USA300, FPR3757 Staphylococcus aureus subsp. aureus USA300 Gc00347 Genome Complete and Published Public UCSF Diep BA bdiep@epi-center.ucsf.edu SAUSA300 2006-02-10 Lancet 367, 731-9 Medical, Human Pathogen 367830 16313 000263_GCAT 161022 637000280 NC_007793 Complete 2872 2706 1 3 32.8 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 30 - 37 Nonmotile Pathogen, Meticillin resistant Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bradyrhizobiaceae Rhodopseudomonas Rhodopseudomonas palustris BACTERIAL Rhodopseudomonas palustris HaA2 HaA2 Rhodopseudomonas palustris HaA2 Gc00346 Gi00959 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org RPB 2006-02-09 Unpublished Hydrogen production, Biotechnological 316058 15747 000264_GCAT 145418 637000240 NC_007778 Complete 11x 5331 4825 1 0 66 Sanger USA Haren Haren Facultative Rod-shaped Mesophile gram- Free living Singles None Soil, Fresh water 25 - 30 Motile Pollutant degrader, Nitrogen fixation, Carbon dioxide fixation, Hydrogen production Phototroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Frankiaceae Frankia Frankia sp. CcI3 BACTERIAL Frankia sp CcI3 CcI3 Frankia sp. CcI3 HFPCcI3, HFP020203 Gc00345 Gi00258 Genome Complete and Published Public LBNL, DOE Joint Genome Institute, Univ of New Hampshire, Univ of Connecticut NSF Benson DR dbenson@uconnvm.uconn.edu Francci3 2006-02-07 Genome Res 17, 7-15 Biotechnological, Agricultural 106370 13963 000265_GCAT 151820 637000116 NC_007777 Complete 13x 5433 4670 1 0 70.1 Sanger USA Root nodules of Casuarina cunninghamiana in 1983 at Harvard Forest 1953 USA Root nodules of Casuarina cunninghamiana in 1983 at Harvard Forest Aerobe Filament-shaped Sporulating Mesophile gram+ Symbiotic Mutualistic Casuarina cunninghamiana None Plant symbiont, Soil Nonmotile Non-Pathogen, Nitrogen fixation Chemoorganotroph Bacteria Cyanobacteria Chroococcales Synechococcus BACTERIAL Synechococcus sp JA-2-3B'a(2-13) JA-2-3B'a(2-13) Synechococcus sp. JA-2-3B'a(2-13) Gc00344 Gi00935 Genome Complete and Published Public J. Craig Venter Institute CYB 2006-02-06 Unpublished Environmental, Ocean carbon cycle 321332 16252 000266_GCAT 147538 637000312 NC_007775 Complete 3046 2944 1 0 58.5 USA Top 2mm of microbial mat samples from Octopus Spring Yellowstone National Park USA Top 2mm of microbial mat samples from Octopus Spring Yellowstone National Park 44.376262 -110.690383 Facultative Coccus-shaped Thermophile gram- Free living None Hot spring, Fresh water Motile Photoautotroph, Photosynthetic Bacteria Cyanobacteria Chroococcales Synechococcus BACTERIAL Synechococcus sp JA-3-3Ab JA-3-3Ab Synechococcus sp. JA-3-3Ab Gc00343 Gi00936 Genome Complete and Published Public J. Craig Venter Institute CYA 2006-02-06 Unpublished Ocean carbon cycle, Environmental 321327 16251 000267_GCAT 139842 637000313 NC_007776 Complete 2932 2897 1 0 60.2 USA Top 2mm of microbial mat samples from Octopus Spring Yellowstone National Park USA Top 2mm of microbial mat samples from Octopus Spring Yellowstone National Park 44.533823 -110.797433 Facultative Coccus-shaped Thermophile gram- Free living None Hot spring, Fresh water Motile Photosynthetic, Photoautotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Rhizobium Rhizobium etli BACTERIAL Rhizobium etli CFN42 CFN42 Rhizobium etli CFN 42 ATCC 51251, CCRC 15792, BCRC 15792, DSM 11541 Yes Gc00342 Gi00503 Genome Complete and Published Public UNAM Brom S sbrom@ccg.unam.mx RHE 2006-02-01 Unpublished Biotechnological, Agricultural 347834 13932 000268_GCAT 121591 203181 640427137 NC_007761 Complete 4381 6089 1 6 61.3 Mexico Phaseolus vulgaris, Guanajuato Mexico Mexico Guanajuato Mexico 21.019266 -101.261455 Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Mutualistic Singles None Root nodule, Host Motile Nitrogen fixation Bacteria Proteobacteria Deltaproteobacteria Syntrophobacterales Syntrophaceae Syntrophus Syntrophus aciditrophicus BACTERIAL Syntrophus aciditrophicus SB SB Syntrophus aciditrophicus SB ATCC 700169 Yes Gc00341 Gi00645 Genome Complete and Published Public Univ of Oklahoma, UCLA, Integrated Genomics Inc NSF Gunsalus RP http://www.mimg.ucla.edu/faculty/gunsalus/ SYN 2006-01-27 PNAS 104, 7600-5 Global carbon cycle, Biotechnological 56780 16258 000269_GCAT 304023 145355 637000317 NC_007759 Complete 3179 3221 1 0 51.5 USA Sludge from a sewage treatment plant in Norman Oklahoma USA Norman, Oklahoma 35.191213 -97.441347 Anaerobe Rod-shaped Nonsporulating Mesophile gram- None Sludge 35 Nonmotile Syntrophic Bacteria Proteobacteria Deltaproteobacteria Myxococcales Myxococcaceae Anaeromyxobacter Anaeromyxobacter dehalogenans BACTERIAL Anaeromyxobacter dehalogenans 2CP-C 2CP-C Anaeromyxobacter dehalogenans 2CP-C ATCC BAA-259 No Gc00340 Gi00026 Genome Complete and Published Public DOE Joint Genome Institute DOE Lvffler FE frank.loeffler@ce.gatech.edu Adeh 2006-01-27 PLoS ONE 3(5):e2103 Environmental, Bioremediation 290397 12634 000270_GCAT 355535 148510 637000007 NC_007760 Complete 11x 5013 4474 1 0 74.9 Sanger USA tropical soil, Cameroon, 1995 1995 Anaerobe Rod-shaped Sporulating Mesophile gram- Free living None Soil 30 Motile Heterotroph Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter litoralis BACTERIAL Erythrobacter litoralis HTCC2594 HTCC2594 Erythrobacter litoralis HTCC2594 HTCC2594 Gc00339 Gi00840 Genome Complete and Published Public Oregon State Univ, J. Craig Venter Institute Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm ELI 2006-01-11 J Bacteriology 191, 2419-2 Marine Microbial Initiative (MMI), Environmental 314225 13480 000271_GCAT 637000103 NC_007722 Complete 3011 3102 1 63.1 USA Sargasso Sea at a depth of 10m solated by dilution-to-extinction culturing from seawater "Sargasso Sea, Atlantic Ocean, BATS" 10 meters Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Marine Motile Phototroph Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Aspergillus Aspergillus oryzae EUKARYAL Aspergillus oryzae RIB40 RIB40 Aspergillus oryzae RIB40 Gc00338 Gi00043 Genome Complete and Published Public NITE Machida, M m.machida@aist.go.jp 2005-12-22 Nature 438, 1157-61` Biotechnological, Protein production, Food industry, Fermentation 510516 20809 000272_GCAT 491981 0 Complete Level 2: High-Quality Draft 9x 37000 12074 8 0 0 Japan Filament-shaped Mesophile None Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Sodalis Sodalis glossinidius BACTERIAL Sodalis glossinidius morsitans morsitans Sodalis glossinidius str. 'morsitans' Gc00337 Genome Complete and Published Public Kitasato Univ USDA, MEXT Hattori M hattori@genome.ls.kitasato-u.ac.jp SG 2006-01-18 Genome Res. 6, 149-56 Evolutionary 343509 16309 000273_GCAT 146613 637000270 NC_007712 Complete 4171 2700 1 3 54.7 USA Microaerophilic Rod-shaped Nonsporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Mutualistic Glossina sp None Host 25 Nonmotile Symbiont Bacteria Tenericutes Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Aster yellows witches'-broom phytoplasma BACTERIAL Candidatus Phytoplasma aster yellows witches'-broom AY-WB AY-WB Aster yellows witches'-broom phytoplasma AYWB Gc00336 Gi00453 Genome Complete and Published Public Ohio State Univ, Integrated Genomics Inc USDA Hogenhout SA http://iris.biosci.ohio-state.edu/osuent/personnel/hogenhout.html AYWB 2006-01-18 J. Bacteriology 188, 3682-3696 Plant Pathogen, Agricultural 322098 13478 000274_GCAT 146861 637000011 NC_007716 Complete 706 766 1 4 26.9 USA Aerobe Sphere-shaped Mesophile gram+ Symbiotic Endosymbiotic intracellular Parasitic Aster yellows, Witches' Broom Host Pathogen Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas oryzae BACTERIAL Xanthomonas oryzae MAFF 311018 MAFF 311018 oryzae Xanthomonas oryzae pv. oryzae MAFF 311018 MAFF 311018 Gc00335 Gi00695 Genome Complete and Published Public NIAS, Japan Ochiai H ochiaih@nias.affrc.go.jp XOO 2006-01-09 JARQ 39, 275-287 Plant Pathogen, Agricultural 342109 16297 000275_GCAT 373786 147525 637000347 NC_007705 Complete 4940 4437 1 0 63.7 Japan Aerobe Rod-shaped Mesophile gram- Free living Leaf blight, Rice blight Host Motile Pathogen Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera stadtmanae ARCHAEAL Methanosphaera stadtmanae DSM 3091 DSM 3091 Methanosphaera stadtmanae DSM 3091 ATCC 43021, DSM 3091 Yes Gc00334 Gi00365 Genome Complete and Published Public Goettingen Genomics Laboratory, Max Planck Institute Thauer R http://www.mpi-marburg.mpg.de/thauer/ Msp 2006-01-05 J Bacteriology 188, 642-58 Energy production, Biotechnological 339860 15579 000276_GCAT 158297 150471 637000163 NC_007681 Complete 1767 1602 1 0 27.6 Germany Human feces Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Sphere-shaped Mesophile gram- Free living None Host, Intestinal microflora 36 - 40 Nonmotile Methanol reducer, Methanogen Lithotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia thailandensis BACTERIAL Burkholderia thailandensis E264 E264 Burkholderia thailandensis E264 ATCC 700388 Yes Gc00333 Gi00111 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID DeShazer D david.deshazer@us.army.mil BTH 2005-12-15 BMC Genomics 6, 174 Agricultural 271848 10774 000277_GCAT 125454 7237 637000052 NC_007650, NC_007651 Complete 6723 5783 2 0 67 USA Rice field sample in Thailand Thailand Rice field sample in Thailand Aerobe Rod-shaped Mesophile gram- Free living None Soil 25 - 42 Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Oceanospirillales Hahellaceae Hahella Hahella chejuensis BACTERIAL Hahella chejuensis KCTC 2396 KCTC 2396 Hahella chejuensis KCTC 2396 KCTC 2396 Gc00332 Gi00288 Genome Complete and Published Public KRIBB MOST Kim JF jfk@kribb.re.kr HCH 2005-12-14 NAR 33, 7066-7073 Biotechnological, Algicidal 349521 16064 000278_GCAT 278562 24515 637000128 NC_007645 Complete 7215 6877 1 0 53.9 Korea "Marine sediment from Cheju Island, Republic of Korea" Korea Marine sediment from Cheju Island, Republic of Korea 33.378561 126.566191 Aerobe Rod-shaped Mesophile Halophile gram- Free living None Fresh water Motile Heterotroph Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Salinibacter Salinibacter ruber BACTERIAL Salinibacter ruber M31 M31 Salinibacter ruber DSM 13855 CECT 5946, DSM 13855 Yes Gc00331 Genome Complete and Published Public J. Craig Venter Institute NSF Nelson KE http://www.tigr.org/~kenelson/ SRU 2005-12-05 PNAS 102, 18147-52 Biotechnological 309807 16159 000279_GCAT 303749 28419 637000250 NC_007677 Complete 3551 2938 1 1 66.2 USA Saltern crystallizer ponds in Spain Spain Saltern crystallizer ponds in Spain Aerobe Rod-shaped Mesophile Halophile gram- Free living None Ponds 37 - 47 Motile Heterotroph Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Rhodospirillaceae Magnetospirillum Magnetospirillum magneticum BACTERIAL Magnetospirillum magneticum AMB-1 AMB-1 Magnetospirillum magneticum AMB-1 ATCC 700264 Gc00330 Genome Complete and Published Public Tokyo Univ of Agriculture and Technology MEXT Matsunaga T tmatsuna@cc.tuat.ac.jp amb 2005-12-07 DNA Res. 12, 157-66 Biotechnological 342108 16217 000280_GCAT 117768 4525 637000155 NC_007626 Complete 4967 4619 1 0 65.1 USA Pond water in Tokyo Japan Japan Pond water in Tokyo Japan 35.689488 139.691706 Aerobe Spiral-shaped Mesophile gram- Free living None Host, Fresh water Motile Magnetotactic, Synthesizes magnetosomes Heterotroph Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma capricolum BACTERIAL Mycoplasma capricolum capricolum California kid ATCC 27343 California kid ATCC 27343 Mycoplasma capricolum subsp. capricolum ATCC 27343 NCTC 10154, ATCC 27343 Yes Gc00329 Genome Complete and Published Public J. Craig Venter Institute Glass J jglass@venterstitute.org MCAP 2005-12-06 Unpublished Animal Pathogen, Medical, Goat Pathogen 340047 16208 000281_GCAT 105235 15744 637000174 NC_007633 Complete 1010 902 1 0 23.8 USA Facultative Sphere-shaped Nonsporulating Mesophile gram+ Free living Singles Septicemia, Arthritis, Caprine mycoplasma Host 37 Nonmotile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Sulfurimonas Sulfurimonas denitrificans BACTERIAL Sulfurimonas denitrificans ATCC 33889 ATCC 33889 Sulfurimonas denitrificans DSM 1251 ATCC 33889, DSM 1251 Yes Gc00328 Genome Complete and Published Public DOE Joint Genome Institute DOE Sievert SM ssievert@whoi.edu Tmden 2005-11-01 Appl Environ Microbiol. 74, 1145-56 Biotechnological 326298 13019 000282_GCAT 109901 11108 637000326 NC_007575 Complete 2201 2219 1 0 34.5 USA Estuarine mud in Netherlands Netherlands Estuarine mud in Netherlands Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles None Marine, Mud 26 Nonmotile Sulfur oxidizer, Nitrate reducer, Desulfurylates coal, Carbon dioxide fixation Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus RF122 bovine RF122 bovine Staphylococcus aureus RF122 Gc00327 Genome Complete and Published Public Univ of Minnesota USDA/CSREES Kapur V http://www.cvm.umn.edu/departments/vpb/faculty/kapur.htm SAB 2005-11-30 Unpublished Animal Pathogen, Cattle Pathogen, Poultry Pathogen, Medical, Human Pathogen 273036 63 000283_GCAT 150529 637000272 NC_007622 Complete 2515 2671 1 0 32.8 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Mastitis, Nosocomial infection Host 30 - 37 Nonmotile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella abortus BACTERIAL Brucella melitensis abortus 2308 2308 Brucella melitensis biovar Abortus 2308 Gc00326 Genome Complete and Published Public Lawrence Livermore National Lab, DOE Joint Genome Institute, Univ Nacional de San Martin Bruce D microbes@cuba.jgi-psf.org BAB 2005-11-22 Infect Immunity 73, 8353-61 Human Pathogen, Biothreat, Animal Pathogen, Medical 359391 16203 000284_GCAT 141718 637000041 NC_007618, NC_007624 Complete 3277 3111 2 0 57 USA Standard laboratory strain Standard laboratory strain Aerobe Rod-shaped Mesophile gram- Free living Brucellosis Host Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosospira Nitrosospira multiformis BACTERIAL Nitrosospira multiformis ATCC 25196 ATCC 25196 Nitrosospira multiformis ATCC 25196 ATCC 25196 Yes Gc00325 Genome Complete and Published Public DOE Joint Genome Institute, Oregon State Univ DOE Bruce D microbes@cuba.jgi-psf.org Nmul 2005-11-15 Appl Environ Microbiol. 74, 3559-72 Biotechnological 323848 13912 000285_GCAT 103735 141903 637000197 NC_007614 Complete 3184 2879 1 3 53.9 USA Aerobe Mesophile gram- Free living None Soil Motile Nitrifying, Ammonia-oxidizer Lithotroph, Autotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Shigella Shigella dysenteriae BACTERIAL Shigella dysenteriae Sd197 Sd197 1 Shigella dysenteriae Sd197 Gc00324 Genome Complete and Published Public Microbial Genome Center of ChMPH MOST Jin Q zdsys@sina.com SDY 2005-11-07 NAR 33, 6445-58 Medical, Human Pathogen 300267 13145 000286_GCAT 145028 640427142 CP000034 Complete 4369 4855 1 2 51.2 China Epidemic in China in 1950s 1950's China Epidemic in China in 1950s Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Dysenteria, Food poisoning Host 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Shigella Shigella sonnei BACTERIAL Shigella sonnei Ss046 Ss046 Shigella sonnei Ss046 Gc00323 Genome Complete and Published Public Microbial Genome Center of ChMPH MOST Jin Q zdsys@sina.com SSO 2005-11-07 NAR 33, 6445-58 Medical, Human Pathogen 300269 13151 000287_GCAT 138945 640427143 NC_007384 Complete 5039 4782 1 4 51 China Epidemic in China in 1950s 1950's China Epidemic in China in 1950s Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Dysenteria, Food poisoning Host 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Shigella Shigella boydii BACTERIAL Shigella boydii Sb227 Sb227 4 Shigella boydii Sb227 Gc00322 Genome Complete and Published Public Microbial Genome Center of ChMPH MOST Jin Q zdsys@sina.com SBO 2005-11-09 NAR 33, 6445-58 Medical, Human Pathogen 300268 13146 000288_GCAT 141716 637000261 NC_007613 Complete 4519 4589 1 1 51.2 China Epidemic in China in 1950s 1950's China Epidemic in China in 1950s Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Dysenteria, Food poisoning Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas savastanoi BACTERIAL Pseudomonas syringae phaseolicola 1448A / Race 6 1448A / Race 6 phaseolicola Pseudomonas syringae pv. phaseolicola 1448A ATCC BAA-978 No Gc00321 Genome Complete and Published Public Cornell Univ, J. Craig Venter Institute NSF Lindeberg M ML16@cornell.edu PSPPH 2005-10-05 J Bacteriology 187, 6488-98 Plant Pathogen, Agricultural 264730 12416 000289_GCAT 493507 137932 637000223 NC_005773 Complete 5928 5511 1 2 58 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Halo blight, Plant rot Plants Motile Pathogen Heterotroph Eukaryota Kinetoplastida Trypanosomatidae Leishmania Leishmania major EUKARYAL Leishmania major Friedlin Friedlin Leishmania major strain Friedlin Gc00320 Genome Complete and Published Public Sanger Institute, EULEISH, SBRI BWF Stuart K kstuart@u.washington.edu 2005-07-15 Science 309, 436-42 Animal Pathogen, Medical, Human Pathogen 347515 10724 000290_GCAT 640281016 Chromosomes Complete Level 2: High-Quality Draft 32800 1579 36 0 63 United Kingdom Mesophile Visceral disease, Leishmaniasis, Skin ulcer Pathogen, Parasite Bacteria Cyanobacteria Chroococcales Synechococcus Synechococcus elongatus BACTERIAL Synechococcus elongatus PCC7942 PCC7942 Synechococcus elongatus PCC 7942 PCC 7942 Gc00319 Genome Complete and Published Public Texas A&M Univ, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Synpcc7942 2005-11-08 Unpublished Biotechnological, Ocean carbon cycle, Environmental 1140 10645 000291_GCAT 109929 3303 637000308 NC_007604 Complete 2695 2765 1 3 55.5 USA Facultative Coccus-shaped Mesophile gram- Free living None Marine Motile Carbon fixation Photoautotroph, Photosynthetic Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sakei BACTERIAL Lactobacillus sakei sakei 23K 23K Lactobacillus sakei subsp. sakei 23K Gc00318 Genome Complete and Published Public INRA Zagorec M Monique.Zagorec@jouy.inra.fr LSA 2005-11-10 Nat. Biotechnology 23, 1527-33 Biotechnological, Lactic acid production, Food industry 314315 13435 000292_GCAT 144583 637000142 NC_007576 Complete 1884 1984 1 0 41.3 France French sausage France French sausage Feces Facultative Rod-shaped Mesophile gram+ Free living None Fresh meat, Oral microflora, Vagina microflora, Intestinal microflora Nonmotile Non-Pathogen Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus MIT9312 MIT9312 Prochlorococcus marinus str. MIT 9312 Gc00317 Genome Complete and Published Public MIT, DOE Joint Genome Institute DOE Chisholm S http://web.mit.edu/biology/www/facultyareas/facresearch/chisholm.shtml 2005-11-03 Unpublished Biotechnological, Ocean carbon cycle, Environmental 74546 13910 000293_GCAT 3377 637000210 NC_007577 Complete 1709 1897 1 0 31.2 USA Gulf Stream of North Atlantic Ocean Gulf Stream of North Atlantic Ocean Oval-shaped Mesophile gram- Free living None Marine Nonmotile Photosynthetic Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Piscirickettsiaceae Thiomicrospira Thiomicrospira crunogena BACTERIAL Thiomicrospira crunogena XCL-2 XCL-2 Thiomicrospira crunogena XCL-2 Gc00316 Genome Complete and Published Public Univ of South Florida, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Tcr 2005-11-01 PLos Biology 4, e383 Biotechnological 317025 13018 000294_GCAT 142557 637000325 NC_007520 Complete 2427 2307 1 0 43.1 USA Deep-sea hydrothermal vent Deep-sea hydrothermal vent Anaerobe Spiral-shaped Mesophile gram- Free living None Marine, Deep sea 28 - 32 Motile Sulfur oxidizer, Carbon dioxide fixation, Desulfurylates coal Chemoautotroph Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio desulfuricans BACTERIAL Desulfovibrio desulfuricans G20 G20 Desulfovibrio desulfuricans subsp. desulfuricans str. G20 Gc00315 Genome Complete and Published Public Univ of Missouri, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Dde 2005-10-31 Unpublished Environmental, Bioremediation 207559 329 000295_GCAT 144439 637000095 NC_007519 Complete 3730 3943 1 0 57.8 USA Oil well corrosion site Oil well corrosion site Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None 25 - 40 Motile Toxic metal reducer, Sulfate reducer Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Geobacteraceae Geobacter Geobacter metallireducens BACTERIAL Geobacter metallireducens GS-15 GS-15 Geobacter metallireducens GS-15 DSM 7210, ATCC 53774 Yes Gc00314 Genome Complete and Published Public Univ of Massachusetts Amherst, DOE Joint Genome Institute DOE Lovley DR dlovley@microbio.umass.edu http://www.bio.umass.edu/micro/lovley.html Gmet 2005-10-28 BMC Microbiology 9, 109 Environmental, Bioremediation 269799 177 000296_GCAT 160621 141204 637000119 NC_007517 Complete Level 6: Finished Critica v1.05, Glimmer v2.13 3997 3690 1 1 59.5 USA Potomac river downstream of Washington DC in 1987 1987 USA Potomac river downstream of Washington DC in 1987 Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Fresh water 30 Motile Chemolithotroph Bacteria Cyanobacteria Chroococcales Synechococcus Synechococcus sp. CC9605 BACTERIAL Prochlorococcus sp. CC9605 (oligotrophic) CC9605 (oligotrophic) Synechococcus sp. CC9605 RCC0753 Gc00313 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Syncc9605 2005-10-28 Unpublished Biotechnological, Ocean carbon cycle, Environmental 110662 13643 000297_GCAT 84712 637000310 NC_007516 Complete 2510 2805 1 0 59.2 USA 51m depth of California coast on 1996 1996 USA 51m depth of California coast on 1996 Coccus-shaped Nonsporulating Mesophile gram- Free living None Marine Motile Carbon dioxide fixation Photosynthetic, Photoautotroph, Oligotroph Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Chlorobium Chlorobium chlorochromatii BACTERIAL Chlorobium chlorochromatii CaD3 CaD3 Chlorobium chlorochromatii CaD3 Gc00312 Genome Complete and Published Public DOE Joint Genome Institute, Penn State Univ DOE Bryant D dab14@psu.edu Cag 2005-10-27 Unpublished Biotechnological 340177 13921 000298_GCAT 141021 637000072 NC_007514 Complete 2572 2096 1 0 44.3 USA Mesophile gram- Free living Chains, Singles None Motile Green sulfur Phototroph Bacteria Cyanobacteria Chroococcales Synechococcus Synechococcus sp. CC9902 BACTERIAL Prochlorococcus sp. CC9902 (coastal) CC9902 (coastal) Synechococcus sp. CC9902 Gc00311 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Syncc 2005-10-27 Unpublished Biotechnological, Ocean carbon cycle, Environmental 316279 13655 000299_GCAT 144130 637000311 NC_007513 Complete 2234 2407 1 0 54.2 USA 5m depth in California current on 1999 1999 USA 5m depth in California current on 1999 Coccus-shaped Mesophile gram- Free living None Marine, Coastal Motile Carbon dioxide fixation Photosynthetic, Photoautotroph Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Pelodictyon Pelodictyon luteolum BACTERIAL Pelodictyon luteolum DSM 273 DSM 273 Pelodictyon luteolum DSM 273 DSM 273 Yes Gc00310 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Plut 2005-10-27 Unpublished Biotechnological 319225 13012 000300_GCAT 156559 143806 637000205 NC_007512 Complete 2364 2187 1 0 57.3 USA Meromictic Lake Polden in Norway Norway Meromictic Lake Polden in Norway 61.75 6.816667 Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Fresh water, Mud, Hot spring 25 Nonmotile Green sulfur Photosynthetic, Phototroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia BACTERIAL Burkholderia cepacia 383 (R18194) 383 (R18194) Burkholderia sp. 383 ATCC 17760, LMG 6991, NCIB 9086 Yes Gc00309 Genome Complete and Published Public DOE Joint Genome Institute DOE Tiedje J http://www.msu.edu/unit/mic/facpages/tiedje.html Bcep18194 2005-10-24 Unpublished Agricultural, Animal Pathogen, Biocontrol, Medical, Bioremediation, Environmental, Human Pathogen, Biodegradation of pollutants 269483 10695 000301_GCAT 299650 141034 637000051 NC_007510, NC_007511, NC_007509 Complete 8676 7898 3 0 66 USA Forest soil in Trinidad in 1958 1958 Trinidad Forest soil in Trinidad in 1958 Facultative Rod-shaped Mesophile gram- Free living Chronic infection, Necrotizing Pneumonia Rhizosphere, Host Motile Pathogen, Nitrogen fixation Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas euvesicatoria BACTERIAL Xanthomonas campestris vesicatoria 85-10 85-10 vesicatoria Xanthomonas campestris pv. vesicatoria str. 85-10 Gc00308 Genome Complete and Published Public Bielefeld Univ BMBF Puhler A http://www.cebitec.uni-bielefeld.de/~puehler XCV 2005-10-23 J. Bacteriol 187, 7254-66 Plant Pathogen, Agricultural 316273 13649 000302_GCAT 140985 637000345 NC_007508 Complete 5178 4849 1 4 64.7 Germany Aerobe Rod-shaped Mesophile gram- Free living Bacterial spot Host 25 - 30 Motile Pathogen Bacteria Firmicutes Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Carboxydothermus Carboxydothermus hydrogenoformans BACTERIAL Carboxydothermus hydrogenoformans Z-2901 Z-2901 Carboxydothermus hydrogenoformans Z-2901 DSM 6008 Yes Gc00307 Genome Complete and Published Public COMB, J. Craig Venter Institute DOE CHY 2005-10-23 PLoS Genet. 25, e65 Biotechnological, Hydrogen production, Energy production 246194 253 000303_GCAT 159585 142594 637000060 NC_007503 Complete 2401 2765 1 0 42 USA "Hot swamp from Kunashir Island, Russia" Russia Hot swamp from Kunashir Island, Russia 47.116667 145.850278 Anaerobe Hyperthermophile gram+ Free living None Fresh water 78 Chemolithotroph Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Pelobacteraceae Pelobacter Pelobacter carbinolicus BACTERIAL Pelobacter carbinolicus DSM 2380 DSM 2380 Pelobacter carbinolicus DSM 2380 DSM 2380 Yes Gc00306 Genome Complete and Published Public Univ of Massachusetts Amherst, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Pcar 2005-10-20 Unpublished Biotechnological 338963 13337 000304_GCAT 157960 140970 637000204 NC_007498 Complete 3662 3271 1 0 55.1 USA Anaerobe Rod-shaped Mesophile gram- Free living None Fresh water, Marine, Sludge Iron reducer Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens BACTERIAL Pseudomonas fluorescens Pf0-1 Pf0-1 Pseudomonas fluorescens Pf0-1 Gc00305 Genome Complete and Published Public DOE Joint Genome Institute, Tufts Univ DOE Bruce D microbes@cuba.jgi-psf.org Pfl 2005-10-11 Genome Biology 10(5):R51 Environmental, Bioremediation 205922 12 000305_GCAT 140331 637000221 NC_007492 Complete 6438 5852 1 0 60.5 USA Agricultural loam soil in 1988 1988 Agricultural loam soil in 1988 Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Soil Motile Non-Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Chromatiales Chromatiaceae Nitrosococcus Nitrosococcus oceani BACTERIAL Nitrosococcus oceani C-107 C-107 Nitrosococcus oceani ATCC 19707 ATCC 19707 Yes Gc00304 Genome Complete and Published Public DOE Joint Genome Institute, Oregon State Univ DOE Bruce D microbes@cuba.jgi-psf.org Noc 2005-10-06 Appl Environ Microbiology 72, 6299-315 Environmental, Biotechnological 323261 13993 000306_GCAT 268153 140562 637000194 NC_007484 Complete 3521 3192 1 1 50.3 USA seawater, North Atlantic Aerobe Mesophile gram- Free living None Marine Motile Nitrifying, Ammonia-oxidizer, Carbon sequestration Chemolithotroph, Autotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 1710b 1710b Burkholderia pseudomallei 1710b Gc00303 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID BURPS1710b 2005-10-03 Unpublished Biothreat, Medical, Human Pathogen 320372 13954 000307_GCAT 140245 637000049 NC_007435, NC_007434 Complete 8252 6493 2 0 68 USA Aerobe Rod-shaped Mesophile gram- Free living Pneumonia, Bacteremia, Melioidosis Soil Motile Non-Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae BACTERIAL Streptococcus agalactiae A909,ATCC BAA-1138 A909,ATCC BAA-1138 Ic Streptococcus agalactiae A909 ATCC BAA-1138 Gc00302 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Rappuoli R rino_rappuoli@chiron.com SAK 2005-10-03 PNAS 102, 13950-5 Animal Pathogen, Medical, Human Pathogen, Cattle Pathogen 205921 326 000308_GCAT 125890 139850 637000286 NC_007432 Complete 8x 2127 2230 1 0 35.6 Sanger USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Septicemia, Meningitis, Pneumonia Host 37 Nonmotile Pathogen Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Natronomonas Natronomonas pharaonis ARCHAEAL Natronomonas pharaonis DSM 2160, Gabara DSM 2160, Gabara Natronomonas pharaonis DSM 2160 DSM 2160, ATCC 35678 Yes Gc00301 Genome Complete and Published Public Max Planck Institute Oesterhelt D oesterhe@biochem.mpg.de NP 2005-10-03 Genome Res. 15, 1336-43 Biotechnological 348780 15742 000309_GCAT 111054 140077 637000187 NC_007426 Complete 2595 2898 1 2 63.4 Germany Lake Gabara Egypt Egypt Lake Gabara Egypt Aerobe Mesophile Halophile 8.5 gram- Free living None Fresh water Alkaliphile Phototroph Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis A/HAR-13 A/HAR-13 A Chlamydia trachomatis A/HAR-13 Gc00300 Genome Complete and Published Public RML-NIAID, Integrated Genomics Inc 2005-09-23 Infect. Immun. 73, 6407-18 Medical, Human Pathogen 315277 13885 000310_GCAT 621204 3009 637000063 NC_007429 Complete 1044 1000 1 1 41.3 USA conjunctiva isolate Saudi Arabia Homo sapiens Eye Conjunctiva Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Pneumonia, Bronchitis, Pharyngitis Host Nonmotile Parasite, Obligate intracellular parasite Bacteria Cyanobacteria Nostocales Nostocaceae Anabaena Anabaena variabilis BACTERIAL Anabaena variabilis ATCC 29413 ATCC 29413 Anabaena variabilis ATCC 29413 ATCC 29413 Gc00299 Genome Complete and Published Public Univ of Missouri, DOE Joint Genome Institute DOE Thiel T http://www.umsl.edu/~biology/Thiel/Thiel.html Ava 2005-09-20 Unpublished Biotechnological, Hydrogen production, Energy production 240292 10642 000311_GCAT 106830 139853 637000006 NC_007413 Complete 6365 5776 1 3 41.4 Sanger USA Aerobe Filament-shaped Mesophile gram- Free living None Soil, Fresh water Motile Nitrogen fixation, Carbon dioxide fixation Heterotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bradyrhizobiaceae Nitrobacter Nitrobacter winogradskyi BACTERIAL Nitrobacter winogradskyi Nb-255 Nb-255 Nitrobacter winogradskyi Nb-255 ATCC 25391 Yes Gc00298 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Nwi 2005-09-15 Appl Environ Microbiology 72, 2050-63 Biotechnological 323098 13474 000312_GCAT 104032 138868 637000193 NC_007406 Complete 3402 3201 1 0 62.5 USA Facultative Rod-shaped Mesophile gram- Free living None Soil Motile Nitrite-oxidizer, Nitrifying, Carbon dioxide fixation Lithotroph Bacteria Proteobacteria Betaproteobacteria Hydrogenophilales Hydrogenophilaceae Thiobacillus Thiobacillus denitrificans BACTERIAL Thiobacillus denitrificans ATCC 25259 ATCC 25259 Thiobacillus denitrificans ATCC 25259 ATCC 25259 Gc00297 Genome Complete and Published Public Lawrence Livermore National Lab, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Tbd 2005-09-09 J Bacteriology 188, 1473-88 Environmental, Bioremediation 292415 13025 000313_GCAT 103822 138944 637000324 NC_007404 Complete 2909 2928 1 0 66.1 USA Soil from Texas USA USA Soil from Texas USA Facultative Rod-shaped Mesophile gram- Free living None Soil 28 - 32 Motile Iron oxidizer, Sulfur oxidizer, Carbon fixation Chemolithotroph, Lithotroph Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina barkeri ARCHAEAL Methanosarcina barkeri Fusaro Fusaro Methanosarcina barkeri str. Fusaro ATCC 29787, DSM 804 No Gc00295 Genome Complete and Published Public Univ of Maryland, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Mbar 2005-08-22 J Bacteriol 188, 7922-31 Biotechnological, Environmental, Energy production, Carbon cycle 269797 103 000314_GCAT 157017 130989 637000162 NC_007355 Complete 4837 3843 1 1 39.3 USA Mud samples from Lago del Fusaro Lake in Naples Italy Italy Naples Italy "40,823,128" "14,055,273" Anaerobe Coccus-shaped Nonsporulating Mesophile gram- Free living None Mud 35 - 40 Nonmotile Methanogen, Cellulose degrader Lithotroph Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia canis BACTERIAL Ehrlichia canis Jake Jake Ehrlichia canis str. Jake Gc00294 Genome Complete and Published Public Univ of Texas, DOE Joint Genome Institute DOE Mavromatis K Kmavrommatis@lbl.gov Ecaj 2005-08-22 J Bacteriology 188, 4015-4023 Animal Pathogen, Medical, Canine Pathogen 269484 10694 000315_GCAT 139026 637000097 NC_007354 Complete 1315 1024 1 0 29 USA 2-year old dog in North Carolina in 1989 1989 USA 2-year old dog in North Carolina in 1989 Dog 2 years old Rod-shaped Mesophile gram- Free living Endosymbiotic intracellular Parasitic Anemia, Ehrlichiosis Host Pathogen Bacteria Chloroflexi Dehalococcoidetes Dehalococcoides BACTERIAL Dehalococcoides sp CBDB1 CBDB1 Dehalococcoides sp. CBDB1 Gc00293 Genome Complete and Published Public Max Planck Institute Adrian L lorenz.adrian@tu-berlin.de cbdb 2005-08-19 Nature Biotech. 23, 1269-73 Bioremediation, Environmental, Ecological, Biotechnological 255470 15604 000316_GCAT 18518 637000090 AJ965256, NC_007356 Complete 1395 1517 1 0 47 Germany Anoxic river sediment Anoxic river sediment Anaerobe Nonsporulating Mesophile gram- Free living None Fresh water, Groundwater Motile Dechlorinates Tetrachloroethene Chemolithotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus pinatubonensis BACTERIAL Ralstonia eutropha JMP134 JMP134 Ralstonia eutropha JMP134 DSM 4058, NCIMB 12592 Gc00292 Genome Complete and Published Public Univ Catolica de Chile, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Reut 2005-08-18 Unpublished Environmental, Bioremediation 264198 10646 000317_GCAT 2875 138517 637000229 NC_007347, NC_007348 Complete 6532 6646 2 2 64.5 USA Aerobe Mesophile gram- Free living None Soil, Fresh water 30 Motile Degrades pollutants Heterotroph, Chemolithoautotroph Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus saprophyticus BACTERIAL Staphylococcus saprophyticus saprophyticus GTC 265 GTC 265 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 NCTC 7292, DSM 20229, ATCC 15305 Yes Gc00291 Genome Complete and Published Public Kitasato Univ Hattori M hattori@genome.ls.kitasato-u.ac.jp SSP 2005-08-12 PNAS 102, 13272-7 Medical, Human Pathogen 342451 15596 000318_GCAT 681611 138683 637000284 NC_007350 Complete 2516 2638 1 2 33.2 Japan Human urine specimen Human urine specimen Homo sapiens Urogenital tract Urine Urinary tract Aerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Urinary infection Host, Human skin Nonmotile Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus NATL2A NATL2A Prochlorococcus marinus str. NATL2A Gc00290 Genome Complete and Published Public MIT, DOE Joint Genome Institute DOE Chisholm S chisholm@mit.edu http://web.mit.edu/biology/www/facultyareas/facresearch/chisholm.shtml PMN 2005-08-12 PLoS Genetics 3, e231 Ocean carbon cycle, Environmental 59920 13911 000319_GCAT 250086 637000212 NC_007335 Complete Phrap 9x Critica, Glimmer 1842 1983 1 0 35.1 Sanger USA 30 meters depth in North Atlantic Ocean 30 meters depth in North Atlantic Ocean Oval-shaped Mesophile gram- Free living Singles None Marine Nonmotile Photosynthetic Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas haloplanktis BACTERIAL Pseudoalteromonas haloplanktis TAC125 TAC125 Pseudoalteromonas haloplanktis TAC125 CIP 108707 Gc00289 Genome Complete and Published Public Genoscope, Institut Pasteur Danchin A http://www.pasteur.fr/recherche/unites/REG/ PSHA 2005-08-10 Genome Res 15, 1325-35 Biotechnological 326442 15713 000320_GCAT 140716 637000217 NC_007482, NC_007481 Complete 3849 3755 2 0 40 France Coastal sea water near a French Antarctic station, Adelia Land 1992 Coastal sea water near a French Antarctic station Aerobe Rod-shaped Nonsporulating Psychrophile gram- Free living None Marine, Coastal Motile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Nocardiopsaceae Thermobifida Thermobifida fusca BACTERIAL Thermobifida fusca YX YX Thermobifida fusca YX ATCC BAA-629 No Gc00288 Genome Complete and Published Public Cornell Univ, DOE Joint Genome Institute DOE Lykidis A alykidis@lbl.gov Tfu 2005-08-10 J. Bacteriology 189, 2477-2486 Bioenergy, Biofuels, Medical, Human Pathogen, Biotechnological 269800 94 000321_GCAT 501250 201958 637000319 NC_007333 Complete 3Kb, 40Kb 3642 3257 1 0 67.5 USA compost pile in the 1970's Aerobe Rod-shaped Sporulating Thermophile 4 - 10 gram+ Free living Respiratory infection, Farmer's lung, Mushroom worker's disease Self-heated organic materials 50 - 55 Nonmotile Pathogen, Cellulose degrader, Degrades organic material Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma hyopneumoniae BACTERIAL Mycoplasma hyopneumoniae 7448 7448 Mycoplasma hyopneumoniae 7448 Gc00287 Genome Complete and Published Public LNCC, Universidade Federal do Rio Grande do Sul Zaha A zaha@cbiot.ufrgs.br MHP 2005-08-10 J. Bacteriol. 187, 5568-5577 Medical, Animal Pathogen 262722 10639 000322_GCAT 137824 637000178 NC_007332 Complete 920 744 1 0 28.5 Brazil Infected pig in Lindoia do Sul Santa Catarina Brazil Brazil Infected pig in Lindoia do Sul Santa Catarina Brazil -27.051537 -52.082512 Sus scrofa Facultative Sphere-shaped Nonsporulating Mesophile gram+ Free living Singles Enzootic pneumonia, Respiratory infection Host 37 Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Rhodocyclales Rhodocyclaceae Dechloromonas Dechloromonas aromatica BACTERIAL Dechloromonas aromatica RCB RCB Dechloromonas aromatica RCB Gc00286 Genome Complete and Published Public DOE Joint Genome Institute, Southern Illinois Univ DOE Kellaris Salinero K kellarkv@nature.berkeley.edu http://www.science.siu.edu/microbiology/coates/ Daro 2005-08-08 BMC Genomics 10, 351 Environmental, Bioremediation 159087 9635 000323_GCAT 203562 637000088 NC_007298 Complete 4501 4373 1 0 59.3 USA Potomac River Maryland USA Potomac River Maryland Facultative Rod-shaped Mesophile gram- Free living None Fresh water Motile Hydrocarbon-oxidizing, Chlorate-reducer, Benzene degradation Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes M1 MGAS5005 M1 MGAS5005 M1 Streptococcus pyogenes MGAS5005 ATCC BAA-947 Gc00285 Genome Complete and Published Public RML-NIAID, Integrated Genomics Inc NIH Musser JM jmmusser@tmh.tmc.edu http://www.niaid.nih.gov/dir/labs/lhbp/musser.htm M 2005-08-08 J. Infect. Dis. 192, 771-82 Animal Pathogen, Human Pathogen, Medical 293653 13888 000324_GCAT 493418 637000297 NC_007297 Complete 1838 1973 1 0 38.5 USA Invasive case in Ontario Canada Invasive case in Ontario Homo sapiens Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Tonsillitis, Sinusitis, Pneumonia, Pharyngitis, Otitis, Necrotizing fasciitis, Myositis, Meningitis, Mastoiditis, Endocarditis, Bone infection Human nasopharyngeal microflora, Host 35 Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes M28 MGAS6180 M28 MGAS6180 M28 Streptococcus pyogenes MGAS6180 ATCC BAA-1064 Gc00284 Genome Complete and Published Public RML-NIAID, Integrated Genomics Inc NIH Musser JM jmmusser@tmh.tmc.edu http://www.niaid.nih.gov/dir/labs/lhbp/musser.htm M 2005-08-08 J. Infect. Dis. 192, 760-770 Animal Pathogen, Medical, Human Pathogen 319701 13887 000325_GCAT 692418 637000298 NC_007296 Complete 1897 2066 1 0 38.5 USA Invasive disease in Texas in 1998 1998 USA Invasive disease in Texas in 1998 Homo sapiens Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Pharyngitis, Tonsillitis Human nasopharyngeal microflora, Host 35 Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma hyopneumoniae BACTERIAL Mycoplasma hyopneumoniae J J Mycoplasma hyopneumoniae J NCTC 10110, ATCC 2593 Yes Gc00283 Genome Complete and Published Public LNCC, Universidade Federal do Rio Grande do Sul Zaha A zaha@cbiot.ufrgs.br MHJ 2005-08-07 J. Bacteriol. 187, 5568-5577 Medical 262719 10675 000326_GCAT 104692 138119 637000179 NC_007295 Complete 897 742 1 0 28.5 Brazil Facultative Sphere-shaped Nonsporulating Mesophile gram+ Free living Singles None Host 37 Nonmotile Non-Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma synoviae BACTERIAL Mycoplasma synoviae 53 53 Mycoplasma synoviae 53 Gc00282 Genome Complete and Published Public LNCC, Universidade Federal do Rio Grande do Sul Zaha A zaha@cbiot.ufrgs.br MS 2005-08-07 J. Bacteriol. 187, 5568-5577 Animal Pathogen, Medical, Chicken Pathogen 262723 10676 000327_GCAT 137538 637000185 NC_007294 Complete 799 766 1 0 28.5 Brazil Broiler breeder pig in Parana Brazil Brazil Parana Brazil -12.616181 -47.883649 Facultative Sphere-shaped Nonsporulating Mesophile gram+ Free living Singles Respiratory infection Host 37 Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Candidatus Blochmannia Candidatus Blochmannia pennsylvanicus BACTERIAL Candidatus Blochmannia pennsylvanicus BPEN BPEN Candidatus Blochmannia pennsylvanicus str. BPEN Gc00281 Genome Complete and Published Public Marine Biological Laboratory BPEN 2005-08-05 Genome Res 15, 1023-33 Biotechnological, Pest control, Evolutionary 291272 13875 000328_GCAT 137864 637000057 NC_007292, CP000016 Complete 791 661 1 0 29.6 USA Rod-shaped Mesophile gram- Free living Camponotus None Endosymbiont, Insect endosymbiont, Host Intracellular Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Colwelliaceae Colwellia Colwellia psychrerythraea BACTERIAL Colwellia psychroerythraea 34H 34H Colwellia psychrerythraea 34H ATCC BAA-681 Gc00280 Genome Complete and Published Public J. Craig Venter Institute DOE TIGR www@tigr.org CPS 2005-07-26 PNAS 102, 10913-8 Biotechnological, Environmental, Carbon cycle 167879 275 000329_GCAT 681610 131238 637000081 NC_003910 Complete 5373 5178 1 0 38 USA Arctic marine sediments Arctic marine sediments Facultative Rod-shaped Psychrophile gram- Free living None Sediment 8 Motile Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Candidatus Pelagibacter Candidatus Pelagibacter ubique BACTERIAL Candidatus Pelagibacter ubique SAR11 HTCC1062 HTCC1062 Candidatus Pelagibacter ubique HTCC1062 HTCC1062 Gc00279 Genome Complete and Published Public COMB, Diversa, Oregon State Univ NSF Giovannoni SJ http://oregonstate.edu/dept/microbiology/fac/sp/giov1.html SAR 2005-07-25 Science 309, 1242-5 Environmental, Ecological 335992 13989 000330_GCAT 680941 637000058 NC_007205 Complete 1308 1429 1 0 29.7 USA Aerobe Rod-shaped Mesophile gram- Free living None Marine Oligotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Psychrobacter Psychrobacter arcticus BACTERIAL Psychrobacter arcticum 273-4 273-4 Psychrobacter arcticus 273-4 VKM B-2377, DSM 17307 Yes Gc00278 Genome Complete and Published Public Michigan State Univ, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Psyc 2005-07-22 Unpublished Biotechnological, Astrobiological 259536 9633 000331_GCAT 690310 137201 637000226 NC_007204 Complete 2650 2226 1 0 42.8 USA 20-40000 year old Serbian permafrost in Russia, Siberia, Kolyma lowland Russia 20-40000 year old Serbian permafrost in Russia 65.821602 153.327561 Aerobe Rod-shaped Psychrophile gram- Free living None Fish, Soil, Fresh water -2.5 - Q188620 Nonmotile Radiation resistant Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Aspergillus Aspergillus fumigatus EUKARYAL Aspergillus fumigatus Af293 Af293 Aspergillus fumigatus Af293 Gc00277 Genome Complete and Published Public Sanger Institute, OpGen, Nagasaki Univ, Univ of Salamanca, J. Craig Venter Institute, Institut Pasteur, Univ of Manchester Wellcome Trust, NIH, Beowulf Genomics Berriman M mb4@sanger.ac.uk 2005-07-19 Unpublished Medical, Human Pathogen 330879 131 000332_GCAT 638208601 NC_007194-201 Complete 10.5x 29389 9923 8 0 49.8 Sanger United Kingdom Mesophile Aspergillosis Pathogen Eukaryota Kinetoplastida Trypanosomatidae Trypanosoma Trypanosoma cruzi EUKARYAL Trypanosoma cruzi CL Brener TC3 CL Brener TC3 Trypanosoma cruzi CL Brener Gc00276 Genome Complete and Published Public Seattle Biomedical Research Institute, Univ of Uppsala, J. Craig Venter Institute NIH-NIAID Andersson B bjorn.andersson.medgen.uu.se 2005-07-15 Science 309, 409-15 Medical, Human Pathogen 353153 11755 000333_GCAT 0 AAHK01000000 Complete Level 2: High-Quality Draft 34000 22570 11 0 51.7 International Mesophile American Trypanosomiasis, Chagas disease Parasite, Pathogen Eukaryota Kinetoplastida Trypanosomatidae Trypanosoma Trypanosoma brucei EUKARYAL Trypanosoma brucei TREU927/4 GUTat10.1 TREU927/4 GUTat10.1 Trypanosoma brucei TREU927 Gc00275 Genome Complete and Published Public Sanger Institute, J. Craig Venter Institute Wellcome Trust, NIH-NIAID Berriman M mb4@sanger.ac.uk 2005-07-15 Science 309, 416-22 Animal Pathogen, Medical, Human Pathogen 185431 11756 000334_GCAT 639622600 NC_008409- Complete Level 2: High-Quality Draft 26000 9068 11 0 0 International Mesophile Human sleeping sickness, Trypanosomiasis Host Parasite, Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus haemolyticus BACTERIAL Staphylococcus haemolyticus JCSC1435 JCSC1435 Staphylococcus haemolyticus JCSC1435 JCSC1435 Gc00274 Genome Complete and Published Public Juntendo Univ, NITE Keiichi H hiram@med.juntendo.ac.jp 2005-07-12 J Bacteriol 187, 7292-308 Animal Pathogen, Medical, Human Pathogen, Biotechnological 279808 12508 000335_GCAT 130983 642555160 NC_007168 Complete 1.3Kb, 2.5Kb 2685 2768 1 3 32.8 Japan Japanese inpatient at Juntendo Hospital, Tokyo, in 2000 2000 Japan Japanese inpatient at Juntendo Hospital, Tokyo, in 2000 35.702222 139.7625 Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Opportunistic infection Human skin, Host 30 - 37 Nonmotile Pathogen Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus acidocaldarius ARCHAEAL Sulfolobus acidocaldarius DSM 639 DSM 639 Sulfolobus acidocaldarius DSM 639 ATCC 33909 Yes Gc00273 Genome Complete and Published Public Epidauros Biotechnologie AG, Univ of Copenhagen European Union Garrett RA garrett@mermaid.molbio.ku.dk Saci 2005-07-08 J. Bacteriol 187, 4992-9 Biotechnological 330779 13935 000336_GCAT 156881 949 638154517 NC_007181 Complete 2225 2344 1 0 36.7 European Consortium Terrestrial solfataras Japan Terrestrial solfataras Obligate aerobe Coccus-shaped Nonsporulating Thermophile 1 - 6 gram- Free living Singles None Fresh water 70 - 75 Nonmotile Acidophile, Sulfur oxidizer Lithotroph Eukaryota Chordata Actinopterygii Cypriniformes Cyprinidae Danio EUKARYAL Danio rerio Tuebingen Tuebingen Zebrafish Danio rerio Tuebingen Gc00272 Genome Complete and Published Public Sanger Institute, Washington Univ NIH Johnson SL http://www.genetics.wustl.edu/molgen/johnson.html 2005-07-05 Unpublished 7955 11776 000337_GCAT 639469800 CAAK00000000 Complete Level 2: High-Quality Draft 1700000 32174 25 0 0 Sanger International Mesophile Fresh water Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium jeikeium BACTERIAL Corynebacterium jeikeium K411 K411 Corynebacterium jeikeium K411 Gc00271 Genome Complete and Published Public Institute of Genome Research, Bielefeld Univ Bielefeld Univ Tauch A Andreas.Tauch@Genetik.Uni-Bielefeld.DE 2005-07-04 J Bacteriol 187, 4671-82 Medical, Human Pathogen 306537 13967 000338_GCAT 137455 637000085 NC_007164 Complete 2462 2235 1 0 61.4 Germany Axilla of bone marrow transplant patient Axilla of bone marrow transplant patient Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Septicemia, Endocarditis, Meningitis, Nosocomial infection Human skin, Host Nonmotile Lipophilic, Pathogen Chemoorganotroph Eukaryota Apicomplexa Aconoidasida Theileriidae Theileria Theileria parva EUKARYAL Theileria parva Muguga Muguga Theileria parva strain Muguga Gc00270 Genome Complete and Published Public J. Craig Venter Institute, ILRI CGIAR Gardner MJ gardner@tigr.org TP0 2005-07-01 Science 309, 134-7 Animal Pathogen, Medical, Cattle Pathogen 333668 16138 000339_GCAT 640281009 NC_007344-5 Complete Level 2: High-Quality Draft 8308 4159 4 0 34.1 USA Mesophile East Coast Fever Pathogen, Intracellular, Parasite Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens BACTERIAL Pseudomonas fluorescens Pf-5 Pf-5 Pseudomonas fluorescens Pf-5 ATCC BAA-477 Gc00269 Genome Complete and Published Public J. Craig Venter Institute, Oregon State Univ USDA Paulsen I http://www.bio.jhu.edu/Directory/Faculty/Paulsen/Default.html PFL 2005-06-30 Nature Biotech 23, 873-8 Antibiotic production, Environmental, Biotechnological, Bioremediation 220664 327 000340_GCAT 493739 134663 637000220 NC_004129 Complete 7074 6270 1 0 63.3 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Soil, Fresh water 25 - 30 Motile Non-Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi 86-028NP 86-028NP Haemophilus influenzae 86-028NP Gc00268 Genome Complete and Published Public Ohio State Univ NIH-NIDCD Dyer D david-dyer@ouhsc.edu NTHI 2005-06-27 J. Bacteriol 187, 4627-4636 Medical, Human Pathogen 281310 11752 000341_GCAT 150522 637000125 NC_007146 Complete 1913 1927 1 0 38.2 USA Pediatric patient with otitis media from Columbus Children's Hospital USA Pediatric patient with otitis media from Columbus Children's Hospital 39.953032 -82.978495 Homo sapiens Child Patient with otitis media Ear Facultative Rod-shaped Mesophile gram- Free living Sinusitis, Septicemia, Bronchitis, Meningitis, Otitis media Host 35 - 37 Nonmotile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia felis BACTERIAL Rickettsia felis URRWXCal2 URRWXCal2 Rickettsia felis URRWXCal2 ATCC VR-1525 Gc00267 Genome Complete and Published Public CNRS CNRG Raoult D didier.raoult@medecine.univ-mrs.fr RF 2005-06-10 PLoS Biology 3, e248 Medical, Animal Pathogen 315456 13884 000342_GCAT 681609 137274 637000244 NC_007109 Complete 1485 1554 1 2 32.5 France Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Flea-borne Spotted Fever, Rickettsiosis Host Nonmotile Pathogen Eukaryota Dictyosteliida Dictyostelium Dictyostelium discoideum EUKARYAL Dictyostelium discoideum AX4 AX4 Dictyostelium discoideum AX4 Gc00266 Genome Complete and Published Public International Collaboration European Union, MRC, DFG, NIH Kuspa A akuspa@bcm.tmc.edu 2005-06-03 Nature 435, 43-57 Model organism 352472 201 000343_GCAT 695743 639609200 NC_007087-92 Complete Level 2: High-Quality Draft 34000 12500 6 0 22 International Mesophile Soil Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas campestris BACTERIAL Xanthomonas campestris campestris 8004 8004 campestris Xanthomonas campestris pv. campestris str. 8004 Gc00265 Genome Complete and Published Public Guangxi Univ, The Institute of Microbiology, China XC 2005-05-27 Genome Res 15, 757-67 Plant Pathogen, Agricultural 314565 15 000344_GCAT 23433 133030 637000343 NC_007086 Complete 5148 4351 1 0 65 China Inflected cauliflower in Sussex UK in 1958 1958 United Kingdom Inflected cauliflower in Sussex UK in 1958 50.928014 -0.461707 Aerobe Rod-shaped Mesophile gram- Free living Black rot, Citrus canker Host 25 - 30 Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae BACTERIAL Pseudomonas syringae syringae B728a B728a syringae Pseudomonas syringae pv. syringae B728a Gc00264 Genome Complete and Published Public DOE Joint Genome Institute, Univ of California, Berkeley DOE Bruce D microbes@cuba.jgi-psf.org Psyr 2005-05-17 PNAS 102, 11064-9 Plant Pathogen, Agricultural 205918 323 000345_GCAT 637000224 NC_007004 Complete 6100 5258 1 0 59.2 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plant rot Plants Motile Pathogen Heterotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella abortus BACTERIAL Brucella abortus bv 1, 9-941 bv 1, 9-941 1 Brucella abortus bv. 1 str. 9-941 Gc00263 Genome Complete and Published Public Univ of Uppsala, IIB-UNSAM, Univ of Minnesota USDA Halling SM shalling@nadc.ars.usda.gov BruAb 2005-04-06 J Bacteriology 187, 2715-26 Animal Pathogen, Biothreat, Medical, Human Pathogen, Cattle Pathogen 262698 9619 000346_GCAT 115056 637000039 NC_006932, NC_006933 Complete 3287 3415 2 0 57.2 International Facultative Rod-shaped Mesophile gram- Free living Brucellosis Host 37 Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila abortus BACTERIAL Chlamydophila abortus S26/3 S26/3 Chlamydophila abortus S26/3 Gc00262 Genome Complete and Published Public Sanger Institute, Moredun Res Inst, Scottish Crop Research Institute The Scottish Office Parkhill J http://www.sanger.ac.uk/Users/parkhill/ CAB 2005-04-04 Genome Res. 15, 629-40 Animal Pathogen, Medical, Human Pathogen 218497 355 000347_GCAT 637000065 NC_004552 Complete 1144 1000 1 0 39.9 United Kingdom Enzootic abortion case in sheep Enzootic abortion case in sheep Sheep Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Respiratory infection, Bronchitis, Pharyngitis, Pneumonia Host 37 Nonmotile Pathogen, Intracellular, Parasite Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Choleraesuis SC-B67 SC-B67 Choleraesuis Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 Gc00261 Genome Complete and Published Public Chang Gung Univ Chiu CH chchiu@adm.cgmh.org.tw SC 2005-04-04 Nucleic Acids Res. 33, 1690-8 Animal Pathogen, Medical, Human Pathogen 321314 9618 000348_GCAT 637000251 NC_006905 Complete 4755 5043 1 2 52.2 China 58-year old man with sepsis 58-year old man with sepsis Homo sapiens Male 58 Patient with sepsis Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Swine paratyphoid, Food poisoning, Gastroenteritis, Salmonellosis Food, Soil, Fresh water, Host 37 Motile Pathogen Chemoorganotroph Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis BACTERIAL Bacteroides fragilis NCTC 9343 NCTC 9343 Bacteroides fragilis NCTC 9343 NCTC 9343, ATCC 25285 Yes Gc00260 Genome Complete and Published Public Sanger Institute Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ 2005-03-04 Science 5714, 1463-1465 Animal Pathogen, Medical, Human Pathogen 272559 46 000349_GCAT 5232 137514 637000024 NC_003228 Complete 5205 4409 1 1 43.2 United Kingdom Homo sapiens Gastrointestinal tract Intestinal tract Obligate anaerobe Rod-shaped Mesophile gram- Free living Abscesses, Diarrhea Intestinal microflora, Host 37 Pathogen Chemoorganotroph Eukaryota Entamoeba Entamoeba histolytica EUKARYAL Entamoeba histolytica HM-1:IMSS HM-1:IMSS Entamoeba histolytica HM-1:IMSS ATCC 30459 Gc00259 Genome Complete and Published Public Sanger Institute, London School of Hygiene and Tropical Medicine, J. Craig Venter Institute Wellcome Trust, NIH-NIAID Loftus B bjloftus@tigr.org 2005-02-25 Nature 433, 865-8 Medical, Human Pathogen 294381 142 000350_GCAT 681606 640281001 NZ_AAFB00000000 Complete Level 2: High-Quality Draft 12.5x 20772 10202 14 0 24.3 Sanger International Mesophile Amoebiasis Host Parasite, Pathogen Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae BACTERIAL Neisseria gonorrhoeae FA1090 FA1090 Neisseria gonorrhoeae FA 1090 ATCC 700825 Gc00258 Genome Complete and Published Public Univ of Oklahoma, Ohio State Univ NIH-NIAID Roe B http://cheminfo.chem.ou.edu/faculty/bar.html NGO 2005-02-15 Unpublished Medical, Human Pathogen 242231 23 000351_GCAT 118547 112315 637000188 AE004969, NC_002946 Complete 2153 2148 1 0 52.7 USA Patient with disseminated gonococcal infection Patient with disseminated gonococcal infection Homo sapiens Patient with disseminated gonococcal infection Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Gonorrhea Host 35 - 37 Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Aliivibrio Aliivibrio fischeri BACTERIAL Vibrio fischeri ES114 ES114 Vibrio fischeri ES114 ATCC 700601 Gc00257 Genome Complete and Published Public Univ of Hawaii, Integrated Genomics Inc W.M. Keck Foundation Ruby EG http://www.kewalo.hawaii.edu/labs/ruby/ VF 2005-02-14 PNAS 102, 3004-3009 Medical 312309 12986 000352_GCAT 118194 128741 637000334 NC_006840, NC_006841 Complete 4238 4136 2 1 38.3 USA Light organs of the squid Euprymna scolopes Light organs of the squid Euprymna scolopes Facultative Rod-shaped Nonsporulating Mesophile gram- Symbiotic Euprymna scolopes Singles None Fresh water Motile Luminescent, Non-Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas oryzae BACTERIAL Xanthomonas oryzae pv. oryzae KACC10331 KACC10331 Xanthomonas oryzae pv. oryzae KACC10331 KACC10331 Gc00256 Genome Complete and Published Public NIAB, MACROGEN Lee BM lbmoo@rda.go.kr XOO 2005-02-04 NAR 33, 577-86 Plant Pathogen, Agricultural 291331 12931 000353_GCAT 681604 111718 637000346 AE013598, NC_006834 Complete 4941 4357 1 0 63.7 Korea Aerobe Rod-shaped Mesophile gram- Free living Blight disease Host Motile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Wolbachia Wolbachia endosymbiont of Brugia malayi BACTERIAL Wolbachia sp. TRS TRS Wolbachia endosymbiont strain TRS of Brugia malayi Gc00255 Genome Complete and Published Public New England Biolabs, Integrated Genomics Inc NEB Slatko B http://tools.neb.com/wolbachia/labsite/barton2.html Wbm 2005-02-04 PLoS Biology 3, e121 Biotechnological 292805 12475 000354_GCAT 137344 637000340 AE017321, NC_006833 Complete 1080 943 1 0 34.2 USA Aerobe Coccus-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Brugia malayi None Endosymbiont, Nematode endosymbiont, Host Nonmotile Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia ruminantium BACTERIAL Ehrlichia ruminantium Welgevonden, CIRAD Welgevonden, CIRAD Ehrlichia ruminantium str. Welgevonden Gc00254 Genome Complete and Published Public CIRAD Frutos R roger.frutos@cirad.fr ERWE 2005-02-04 J Bacteriology 188, 2533-42 Ruminant Pathogen, Medical, Animal Pathogen 254945 13355 000355_GCAT 137287 639279309 CR925678, NC_006832 Complete 1512 1002 1 0 27.5 France Infected tick Infected tick Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Heartwater Host Pathogen Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia ruminantium BACTERIAL Ehrlichia ruminantium Gardel Gardel Ehrlichia ruminantium str. Gardel Gc00253 Genome Complete and Published Public CIRAD Frutos R roger.frutos@cirad.fr ERGA 2005-02-04 J Bacteriology 188, 2533-42 Animal Pathogen, Ruminant Pathogen, Medical 302409 13356 000356_GCAT 137282 637000099 NC_006831, CR925677 Complete 1499 994 1 0 27.5 France Caribbean island of Guadeloupe Caribbean island of Guadeloupe Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Heartwater Host Pathogen Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus acidophilus BACTERIAL Lactobacillus acidophilus NCFM NCFM etli Lactobacillus acidophilus NCFM ATCC 700396 Gc00252 Genome Complete and Published Public Environm Biotech Inst, State Univ of New York, California Polytechnic State Univ Environm Biotech Inst, Dairy Management Inc Cano R http://www.calpoly.edu/~rcano/ LBA 2005-01-31 PNAS 102, 3906-12 Biotechnological, Yogurt production, Food industry 272621 82 000357_GCAT 681603 128957 637000138 NC_006814, CP000033 Complete 1993 2035 1 0 34.7 USA Human in 1970 1970 Human in 1970 Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Mesophile 4 - 5 gram+ Free living Chains None Host, Intestinal microflora, Oral microflora, Vagina microflora 45 Probiotic Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Gluconobacter Gluconobacter oxydans BACTERIAL Gluconobacter oxydans 621H 621H Gluconobacter oxydans 621H Gc00251 Genome Complete and Published Public Competence Network, Julich GmbH, Georg-August-Univ Goettingen, Technische Univ, Berlin BASF, BMBF Sahm H h.sahm@fz-juelich.de GOX 2005-01-24 Nat. Biotechnology 23, 195-200 Vitamin C production, Biotechnological 290633 13325 000358_GCAT 12015 128716 637000122 CP000009, NC_006677 Complete 2702 2752 1 5 61.1 Germany Aerobe Rod-shaped Mesophile gram- Free living None Beer, Plants, Wine, Fruits 25 - 30 Motile Acidophile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis BACTERIAL Staphylococcus epidermidis RP62A RP62A Staphylococcus epidermidis RP62A ATCC 35984 Gc00250 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Gill SR srgill@tigr.org SE 2005-01-18 J Bacteriology 187, 2426-38 Medical, Human Pathogen 176279 64 000359_GCAT 111590 141202 637000282 CP000029, NC_002976 Complete 14.94X 2616 2782 1 1 32.2 USA Patient with intravascular catheter-associated sepsis Patient with intravascular catheter-associated sepsis Homo sapiens Patient with intravascular catheter-associated sepsis Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Toxic-shock syndrome, Nosocomial infection, Septicemia, Staphylococcal scarlet fever Host 30 - 37 Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus COL COL Staphylococcus aureus subsp. aureus COL Gc00249 Genome Complete and Published Public J. Craig Venter Institute MGRI, NIH-NIAID Gill SR http://www.tigr.org/~srgill/ SA 2005-01-13 J Bacteriology 187, 2426-38 Animal Pathogen, Cattle Pathogen, Poultry Pathogen, Medical, Human Pathogen 93062 238 000360_GCAT 133255 637000273 CP000046, NC_002951 Complete 10.9X 2809 2769 1 1 32.8 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Toxic-shock syndrome, Styes, Pneumonia, Phlebitis, Osteomyelitis, Nosocomial infection, Boils, Mastitis, Impetigo, Furunculosis, Fever, Endocarditis, Meningitis Host 30 - 37 Nonmotile Pathogen Archaea Euryarchaeota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus kodakarensis ARCHAEAL Thermococcus kodakaraensis KOD1 KOD1 Thermococcus kodakarensis KOD1 JCM 12380, ATCC BAA-918 Yes Gc00248 Genome Complete and Published Public Kyoto Univ, Kwansei Gakuin Univ Fukui T tfukui@bio.titech.ac.jp TK 2005-01-13 Genome Res 15, 352-63 Biotechnological 69014 13213 000361_GCAT 387880 111673 638154520 NC_006624 Complete 2088 2411 1 0 52 Japan Solfatara on Kodakara Island Kagoshima, Japan March 25, 1993 Japan Solfatara on Kodakara Island Japan 31.596554 130.557116 Anaerobe Coccus-shaped Nonsporulating Hyperthermophile 5.8 gram- Free living None Hydrothermal vent 85 Motile Heterotroph Eukaryota Basidiomycota Tremellomycetes Tremellales Tremellaceae Filobasidiella Filobasidiella neoformans EUKARYAL Cryptococcus neoformans JEC 21 JEC 21 Cryptococcus neoformans var. neoformans JEC21 Gc00247 Genome Complete and Published Public Stanford Univ, J. Craig Venter Institute NIH-NIAID TIGR crypt@tigr.org 2005-01-10 Science 307, 1321-4 Medical, Human Pathogen 214684 13856 000362_GCAT 502433 638208604 NC_006670-94 Complete Level 2: High-Quality Draft 12.5x 19051 6744 14 0 48.6 Sanger USA Mesophile Cryptococcosis Soil Pathogen, Bipolar, Heterothallic Bacteria Chloroflexi Dehalococcoidetes Dehalococcoides Dehalococcoides ethenogenes BACTERIAL Dehalococcoides ethenogenes 195 195 Dehalococcoides ethenogenes 195 Gc00246 Genome Complete and Published Public J. Craig Venter Institute DOE Seshadri R rekha@tigr.org DET 2005-01-07 Science 307, 105-8 Bioremediation, Environmental, Ecological, Biotechnological 243164 214 000363_GCAT 109890 637000089 NC_002936 Complete 1500 1688 1 0 48.9 USA Anaerobe Nonsporulating Mesophile gram- Free living None Fresh water, Groundwater 35 Motile Dechlorinates Tetrachloroethene Chemolithotroph Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni RM1221 RM1221 Campylobacter jejuni RM1221 ATCC BAA-1062 Gc00245 Genome Complete and Published Public J. Craig Venter Institute USDA TIGR www@tigr.org CJE 2005-01-07 PLoS Biol. 3, e15 Animal Pathogen, Poultry Pathogen, Medical, Human Pathogen 195099 303 000364_GCAT 681600 128665 637000054 CP000025, NC_003912 Complete 1778 1990 1 0 30.31 USA Skin of a retail chicken by the Food Safety Research Information Office Skin of a retail chicken by the Food Safety Research Information Office Chicken Skin Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Singles, Chains Food poisoning, Diarrhea Wastewater, Host 42 Motile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia ruminantium BACTERIAL Ehrlichia ruminantium Welgevonden, ARC-OVI Welgevonden, ARC-OVI Ehrlichia ruminantium str. Welgevonden Gc00244 Genome Complete and Published Public Sanger Institute, Univ of Pretoria WOTRO, DST Allsopp BA basil.allsopp@up.ac.za Erum 2005-01-05 PNAS 102, 838-843 Animal Pathogen, Ruminant Pathogen, Medical 254945 9614 000365_GCAT 137287 639279308 CR767821, NC_005295 Complete 1516 1001 1 0 27.5 South Africa Infected tick Infected tick Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Heartwater Host Pathogen Bacteria Cyanobacteria Chroococcales Synechococcus Synechococcus elongatus BACTERIAL Synechococcus elongatus PCC 6301 PCC 6301 Synechococcus elongatus PCC 6301 ATCC 27144, SAG 1402-1, CCAP 1405/1, PCC 6301, 27344 Gc00243 Genome Complete and Published Public Nagoya Univ Sugita M sugita@gene.nagoya-u.ac.jp syc 2004-12-21 Photosynth Res. 93, 55-67 Ocean carbon cycle, Environmental 269084 13282 000366_GCAT 104959 110298 637000307 AP008231, NC_006576 Complete 2696 2590 1 0 55 Japan Facultative Coccus-shaped Mesophile gram- Free living None Fresh water, Fresh water Motile Photosynthetic, Photoautotroph Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Silicibacter Silicibacter pomeroyi BACTERIAL Silicibacter pomeroyi DSS-3 DSS-3 Silicibacter pomeroyi DSS-3 ATCC 700808, DSM 15171 Yes Gc00242 Genome Complete and Published Public Univ of Georgia, J. Craig Venter Institute NSF Moran MA http://alpha.marsci.uga.edu/Department_page/Profiles/mmoran.htm SPO 2004-12-16 Nature 432, 910-3 Environmental 246200 281 000367_GCAT 118527 111879 637000267 NC_003911, CP000031 Complete 4109 4363 1 1 64.2 USA Aerobe Rod-shaped Mesophile gram- Free living None Fresh water Motile Sulfur cycle Heterotroph Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis SCHU S4 SCHU S4 Francisella tularensis subsp. tularensis SCHU S4 Gc00241 Genome Complete and Published Public MDS, Univ of Uppsala, WRAIR WRAIR, DARPA, FOI, UK-MOD Titball RW rtitball@dstl.gov.uk FTT 2004-12-14 Nature Genetics 37, 153-9 Biothreat, Medical, Human Pathogen 177416 9 000368_GCAT 137424 637000114 NC_006570, AJ749949 Complete 1892 1842 1 0 32.3 International Human case of tularemia in 1951 1951 Human case of tularemia in 1951 Homo sapiens Patient with tularemia Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Tularemia Fresh water, Host Nonmotile Pathogen Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Zymomonas Zymomonas mobilis BACTERIAL Zymomonas mobilis mobilis ZM4 ZM4 Zymomonas mobilis subsp. mobilis ZM4 ATCC31821 Gc00240 Genome Complete and Published Public Macrogen, Seoul National Univ Macrogen Seo J-S jeongsun@macrogen.com ZMO 2004-12-12 Nat. Biotechnol. 23, 63-68 Bioenergy, Energy production, Biotechnological, Biofuels 264203 12354 000369_GCAT 108566 128453 637000356 NC_006526, AE008692 Complete 2056 2125 1 1 46.3 Korea Facultative Rod-shaped Mesophile gram- Free living None 25 - 30 Motile Ethanol production Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Anaplasmataceae Anaplasma Anaplasma marginale BACTERIAL Anaplasma marginale St. Maries St. Maries Anaplasma marginale str. St. Maries Gc00239 Genome Complete and Published Public Washington State Univ, ADRU, Amplicon Express Inc USDA Herndon D david@genomex.com 2004-12-08 PNAS 102, 844-9 Animal Pathogen, Medical, Human Pathogen, Cattle Pathogen 234826 40 000370_GCAT 137271 637000008 NC_004842, CP000030 Complete 1197 1045 1 0 49.8 USA Acutely infected cow from Northern Idaho USA Acutely infected cow from Northern Idaho Cow Aerobe Coccus-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Singles Anaplasmosis Host Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica sv Paratyphi A SARB42 SARB42 Paratyphi A Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 ATCC 9150 Gc00238 Genome Complete and Published Public Washington Univ NIH-NIAID McClelland M mmcclelland@skcc.org SPA 2004-12-08 Nature Genetics 36, 1268-74 Medical, Human Pathogen 295319 13086 000371_GCAT 681598 128997 637000252 CP000026, NC_006511 Complete 4585 4286 1 0 52.5 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Typhoid fever, Food poisoning, Gastroenteritis, Salmonellosis Food, Soil, Fresh water, Host 37 Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Bacillaceae Geobacillus Geobacillus kaustophilus BACTERIAL Geobacillus kaustophilus HTA426 HTA426 Geobacillus kaustophilus HTA426 Gc00237 Genome Complete and Published Public JAMSTEC Takami H takamih@jamstec.go.jp GK 2004-12-08 Nucleic Acids Res 32, 6292-303 Biotechnological 235909 13233 000372_GCAT 128648 637000118 NC_006510, BA000043 Complete 3544 3733 1 1 52.1 Japan Aerobe Rod-shaped Sporulating Thermophile gram+ Free living None Marine, Deep sea Motile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Idiomarinaceae Idiomarina Idiomarina baltica BACTERIAL Idiomarina baltica OS145 OS145 Idiomarina baltica OS145 DSM 15154, LMG 21691 Yes Gi00831 Genome incomplete Public German Research Centre for Biotechnology, J. Craig Venter Institute Moore Foundation Hofle M http://www.gbf.de/index.html OS145 Marine Microbial Initiative (MMI), Environmental 314276 13408 000373_GCAT 59885 638341106 NZ_AAMX00000000 Draft 2715 2698 1 0 47.3 Sanger USA Oxic water column of the Gotland Deep in the Baltic Sea at a depth of 30m Oxic water column of the Gotland Deep in the Baltic Sea at a depth of 30m 59.32222 -20.05056 30 meters Aerobe Thermotolerant Halotolerant gram- Free living None Marine 30 - 40 Motile Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Idiomarinaceae Idiomarina Idiomarina loihiensis BACTERIAL Idiomarina loihiensis L2TR L2TR Idiomarina loihiensis L2TR DSM 15497T, ATCC BAA-735T Yes Gc00236 Genome Complete and Published Public Univ of Hawaii NSF Maqsudul A http://www.hawaii.edu/microbiology/Alam/ IL 2004-12-02 PNAS 101, 18036-18041 Biotechnological 283942 10790 000374_GCAT 371300 128686 637000136 AE017340, NC_006512 Complete 2839 2716 1 0 47 USA Aerobe Rod-shaped Psychrotolerant Halophile gram- Free living None Hydrothermal vent, Marine Bacteria Deinococcus-Thermus Deinococci Thermales Thermaceae Thermus Thermus thermophilus BACTERIAL Thermus thermophilus HB8 HB8 Thermus thermophilus HB8 DSM 579, ATCC 27634 Yes Gc00235 Genome Complete and Published Public NIAIST Kuramitsu S kuramitu@bio.sci.osaka-u.ac.jp TTH 2004-11-23 Unpublished Biotechnological 300852 13202 000375_GCAT 120272 1326 637000323 NC_006461, AP008226 Complete 1849 2307 1 2 69.4 Japan Thermal vent in Japan Japan Thermal vent in Japan Aerobe Thermophile Halotolerant gram- Free living None Fresh water, Hot spring 85 Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus thermophilus BACTERIAL Streptococcus thermophilus LMG18311 LMG18311 Streptococcus thermophilus LMG 18311 ATCC BAA-250 Gc00234 Genome Complete and Published Public INRA, Univ catholique de Louvain, Integrated Genomics Inc FNRS, Walloon Region Ehrlich SD ehrlich@diamant.jouy.inra.fr stu 2004-11-15 Nature Biotech 22, 1554-8 Biotechnological, Yogurt production, Lactic acid production, Food industry 264199 13162 000376_GCAT 45292 129056 637000303 NC_006448, CP000023 Complete 1796 2008 1 0 39.1 International Commercial yogurt in 1974 in the United Kingdom 1974 UK Commercial yogurt in 1974 in the United Kingdom Facultative Coccus-shaped Nonsporulating Thermophile gram+ Free living Pairs, Chains None Milk 45 Nonmotile Non-Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus thermophilus BACTERIAL Streptococcus thermophilus CNRZ 1066 CNRZ 1066 Streptococcus thermophilus CNRZ1066 CNRZ 1066 Gc00233 Genome Complete and Published Public INRA, Univ catholique de Louvain, Integrated Genomics Inc FNRS, Walloon Region Ehrlich SD ehrlich@diamant.jouy.inra.fr str 2004-11-15 Nature Biotech 22, 1554-8 Biotechnological, Yogurt production, Lactic acid production, Food industry 299768 13163 000377_GCAT 386925 128726 637000302 NC_006449, CP000024 Complete 1796 2034 1 0 39.1 International Facultative Coccus-shaped Nonsporulating Thermophile gram+ Free living Chains, Pairs None Milk 45 Nonmotile Non-Pathogen Bacteria Proteobacteria Betaproteobacteria Rhodocyclales Rhodocyclaceae Aromatoleum Aromatoleum aromaticum BACTERIAL Azoarcus sp. EbN1 EbN1 Aromatoleum aromaticum EbN1 Gc00232 Genome Complete and Published Public Max Planck Institute Max Planck Society Rabus R rrabus@mpi-bremen.de 2004-11-13 Arch Microbiol. 183, 27-36 Biotechnological, Agricultural 76114 13242 000378_GCAT 129286 637000012 NC_006513, CR555306 Complete 4296 4690 1 2 65.1 Germany Facultative Rod-shaped Mesophile gram- Free living None Soil, Host 26 Motile Nitrate reducer, Denitrifying, Hydrocarbons metabolizer Diazotroph Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Haloarcula Haloarcula marismortui ARCHAEAL Haloarcula marismortui ATCC43049 ATCC43049 Haloarcula marismortui ATCC 43049 ATCC 43049 Yes Gc00231 Genome Complete and Published Public Institute for Systems Biology DOE, NSF Baliga NS nbaliga@systemsbiology.org 2004-11-04 Genome Res 14, 2221-2234 Biotechnological 272569 105 000379_GCAT 112059 108695 638154503 NC_006396, NC_006397 Complete 3421 4388 2 7 61.1 USA Dead Sea Dead Sea Aerobe Mesophile Halophile gram- Free living None Marine 40 - 50 Motile Proteolytic Chemoorganotroph Eukaryota Apicomplexa Coccidia Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium hominis EUKARYAL Cryptosporidium hominis TU502 TU502 Cryptosporidium hominis TU502 Gc00230 Genome Complete and Published Public Virginia Commonwealth Univ NIH Buck GA http://www.vcu.edu/lifesci/education/buck.html Chro. 2004-10-28 Nature 431, 1107-1112 Animal Pathogen, Medical, Human Pathogen 353151 13200 000380_GCAT 640281014 AAEL01000000 Complete Level 2: High-Quality Draft 8170 3956 8 0 30.9 Sanger USA Mesophile Diarrhea, Gastroenteritis Host Parasite, Pathogen Eukaryota Chordata Actinopterygii Tetraodontiformes Tetraodontidae Tetraodon EUKARYAL Tetraodon nigroviridis Tetraodon nigroviridis Gc00229 Genome Complete and Published Public Genoscope, Broad Institute NIH-NHGRI MIT annotation-info@genome.wi.mit.edu 2004-10-21 Nature 431, 946-57 99883 12350 000381_GCAT 0 CAAE01000000 Complete Level 2: High-Quality Draft 6X 385000 0 21 0 0 Sanger USA Rivers and estuaries of Indonesia Malaysia and India Rivers and estuaries of Indonesia Malaysia and India Mesophile None Fresh water Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus clausii BACTERIAL Bacillus clausii KSM-K16 KSM-K16 Bacillus clausii KSM-K16 Gc00228 Genome Complete and Published Public Kao Corporation, Japan Kawai S kawai.shuji@kao.co.jp ABC 2004-10-20 Unpublished Biotechnological 66692 13291 000382_GCAT 128510 637000019 AP006627, NC_006582 Complete 4303 4349 1 0 44.8 Japan Mesophile gram+ Free living None Soil Protease production, Alkalitolerant, Probiotic Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium profundum BACTERIAL Photobacterium profundum SS9 SS9 Photobacterium profundum SS9 ATCC BAA-1253 No Gc00227 Genome Complete and Published Public Padova Univ Vale G giorgio.valle@unipd.it PBPR 2004-10-19 Science 307, 1459-61 Biotechnological 298386 13128 000383_GCAT 379911 129030 637000206 NC_006370, NC_006371 Complete 6322 5955 2 1 41.7 Italy 2500m depth from the Sulu Trough 2500m depth from the Sulu Trough 2500 meters Facultative Rod-shaped Nonsporulating Psychrotolerant gram- Free living None Marine 15 Motile Piezophile, Barophile, Bioluminescent Bacteria Proteobacteria Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila BACTERIAL Legionella pneumophila Lens Lens serogroup 1 Legionella pneumophila str. Lens Gc00226 Genome Complete and Published Public Institut Pasteur CNRS Buchrieser C cbuch@pasteur.fr 2004-10-19 Nature Genetics 36, 1165-73 Animal Pathogen, Medical, Human Pathogen 297245 13126 000384_GCAT 129134 637000146 NC_006369, CR628337 Complete 3345 3069 1 1 38.4 France major outbreak in France France major outbreak in France Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Legionellosis Fresh water, Fresh water, Soil, Host, Biofilm Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila BACTERIAL Legionella pneumophila Paris Paris Legionella pneumophila str. Paris Gc00225 Genome Complete and Published Public Institut Pasteur CNRS Buchrieser C cbuch@pasteur.fr 2004-10-19 Nature Genetics 36, 1165-73 Animal Pathogen, Medical, Human Pathogen 297246 13127 000385_GCAT 129227 637000147 CR628336, NC_006368 Complete 3503 3288 1 1 38.3 France endemic in France France endemic in France Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Legionellosis, Pneumonia Fresh water, Fresh water, Soil, Host, Biofilm Motile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Nocardiaceae Nocardia Nocardia farcinica BACTERIAL Nocardia farcinica IFM 10152 IFM 10152 Nocardia farcinica IFM 10152 Gc00224 Genome Complete and Published Public NIID, Kitasato Univ, Chiba Univ JSPS Ishikawa J jun@nih.go.jp 2004-10-04 PNAS 101, 14925-30 Animal Pathogen, Medical, Human Pathogen 247156 13117 000386_GCAT 128807 637000198 NC_006361, AP006618 Complete Glimmer 6021 6068 1 2 70.8 Japan Bronchus of a 68-year-old male Japanese patient Japan Bronchus of a 68-year-old male Japanese patient Homo sapiens Male 68 years old Airways Bronchus Aerobe Filament-shaped Sporulating Mesophile gram+ Free living Mastitis, Nocardiosis Soil, Fresh water 37 Nonmotile Pathogen Eukaryota Bacillariophyta Coscinodiscophyceae Thalassiosiraceae Thalassiosira Thalassiosira pseudonana EUKARYAL Thalassiosira pseudonana CCMP 1335 CCMP 1335 Thalassiosira pseudonana CCMP1335 CCMP 1335 Gc00223 Genome Complete and Published Public DOE Joint Genome Institute, Univ of Washington DOE Rokhsar DS dsrokhsar@lbl.gov 2004-10-01 Science 306, 79-86 Environmental, Carbon cycle 296543 191 000387_GCAT 527168 0 AAFD01000000 Complete Level 2: High-Quality Draft 14x 25000 11242 24 0 47 Sanger USA Moriches Bay, Forge River, Long Island, New York 09/08/1958 USA Moriches Bay, Forge River, Long Island, New York 40.756 -72.82 Mesophile 4 - 5 um 4 - 6 um None Marine Carbon sequestration Photosynthetic Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis BACTERIAL Bacteroides fragilis YCH46 YCH46 Bacteroides fragilis YCH46 Gc00222 Genome Complete and Published Public Kitasato Univ, RIKEN, Tokushima Univ JSPS Kuwahara T tomomi@basic.med.tokushima-u.ac.jp BF 2004-10-01 PNAS 101, 14919-24 Animal Pathogen, Medical, Human Pathogen 295405 13067 000388_GCAT 129213 637000025 AP006841, NC_006347 Complete 5277 4730 1 1 43.3 Japan Homo sapiens Gastrointestinal tract Intestinal tract Obligate anaerobe Rod-shaped Mesophile gram- Free living Abscesses, Diarrhea Intestinal microflora, Host 37 Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus licheniformis BACTERIAL Bacillus licheniformis DSM13 Goettingen DSM13 Goettingen Bacillus licheniformis ATCC 14580 ATCC 14580 Yes Gc00221 Genome Complete and Published Public Goettingen Genomics Laboratory, Competence Network Henkel Ehrenreich A aehrenr@gwdg.de BL 2004-09-28 J Mol Microbiol Biotechnol 7, 204-11 Biotechnological, Medical, Human Pathogen 279010 13082 000389_GCAT 29491 128618 639279303 NC_006322, AE017333 Complete 4222 4443 1 0 46.2 Germany Facultative Rod-shaped Sporulating Mesophile gram+ Free living Food poisoning Soil Subtilisin production, Amylase production, Pathogen Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia akari BACTERIAL Rickettsia akari Hartford Hartford Rickettsia akari str. Hartford Gc00220 Genome Complete and Published Public Univ of Iowa A 2007-10-02 Unpublished Medical, Human Pathogen 293614 12953 000390_GCAT 5969 640753043 NC_009881 Complete 1231 1329 1 0 32.3 Sanger USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Rickettsial pox Host Nonmotile Obligate parasite, Pathogen Bacteria Proteobacteria Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila BACTERIAL Legionella pneumophila Philadelphia-1 Philadelphia-1 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 ATCC 33152 Yes Gc00219 Genome Complete and Published Public Columbia Univ NIH-NIAID Russo J http://genome4.cpmc.columbia.edu/researcher/russo.html lpg 2004-09-24 Science 305, 1966-1968 Animal Pathogen, Human Pathogen, Medical 272624 22 000391_GCAT 108917 129126 637000148 NC_002942, AE017354 Complete 3397 3054 1 0 38.3 USA initial event of Legionellosis in Philadelphia USA Philadelphia 39.951639 -75.163808 Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Legionellosis Biofilm, Fresh water, Soil, Host, Fresh water Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Mannheimia Mannheimia succiniciproducens BACTERIAL Mannheimia succiniciproducens MBEL55E MBEL55E Mannheimia succiniciproducens MBEL55E Gc00218 Genome Complete and Published Public KAIST MS 2004-09-22 Nat. Biotechnol. 22, 1275-1281 Biotechnological 221988 13068 000392_GCAT 22261 637000156 NC_006300, AE016827 Complete 2314 2554 1 0 42.5 Korea Rumen Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host, Bovine rumen 37 Nonmotile Non-Pathogen, Succinic acid production Bacteria Proteobacteria Gammaproteobacteria Methylococcales Methylococcaceae Methylococcus Methylococcus capsulatus BACTERIAL Methylococcus capsulatus Bath Bath Methylococcus capsulatus str. Bath NCIMB 11132 Gc00217 Genome Complete and Published Public Univ of Bergen, Norway, J. Craig Venter Institute DOE Ward N nward@tigr.org MCA 2004-09-17 PLOS Biology 2, 1616-1628 Environmental, Bioremediation 243233 21 000393_GCAT 108702 128429 637000166 AE017282, NC_002977 Complete 3304 3112 1 0 63.6 International Aerobe Coccus-shaped Thermophile gram- Free living None 45 Methanotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei BACTERIAL Burkholderia mallei ATCC 23344 ATCC 23344 Burkholderia mallei ATCC 23344 NBL 7, ATCC 23344, EY 2233, China 7, RH627, 3873 Yes Gc00216 Genome Complete and Published Public USAMRIID, J. Craig Venter Institute NIH-NIAID Nierman WC http://www.tigr.org/~wnierman/ BMA 2004-09-17 PNAS 101, 14246-51 Animal Pathogen, Medical, Human Pathogen, Biothreat 243160 171 000394_GCAT 278058 103409 637000048 CP000010, NC_006349, NC_006348, CP000011 Complete 5835 5542 2 0 68 USA Chinese patient in Burma who had glanders in 1944 1944 Burma Chinese patient in Burma who had glanders in 1944 Homo sapiens Patient with glanders Aerobe Rod-shaped Mesophile gram- Free living Glanders, Pneumonia Soil, Host Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus E33L (ZK) E33L (ZK) Bacillus cereus E33L Gc00215 Genome Complete and Published Public Los Alamos National Laboratory, DOE Joint Genome Institute DOE Gilna P pgil@lanl.gov 2004-09-16 J. Bacteriology 188, 3382-3390 Animal Pathogen, Medical, Human Pathogen, Biothreat 288681 12468 000395_GCAT 129281 637000018 CP000001, NC_006274 Complete 5300 6010 1 5 35.4 USA Swab of a zebra carcass in Ethosha National Park in Namibia in 1996 1996 Swab of a zebra carcass in Ethosha National Park in Namibia in 1996 -19.018917 16.346379 Facultative Rod-shaped Sporulating Mesophile gram+ Free living Food poisoning Soil Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei K96243 K96243 Burkholderia pseudomallei K96243 Gc00214 Genome Complete and Published Public Sanger Institute, Porton Down Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ BPS 2004-09-13 PNAS 101, 14240-5 Animal Pathogen, Medical, Human Pathogen, Biothreat 272560 178 000396_GCAT 137094 637000050 NC_006350, BX571965, NC_006351, BX571966 Complete 7247 5947 2 0 68 United Kingdom Clinical isolate from Thailand Thailand Clinical isolate from Thailand Homo sapiens Patient Aerobe Rod-shaped Mesophile gram- Free living Melioidosis Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus licheniformis BACTERIAL Bacillus licheniformis DSM13 Novozymes DSM13 Novozymes Bacillus licheniformis ATCC 14580 ATCC 14580 Yes Gc00213 Genome Complete and Published Public INRA, AstraZeneca, Novozymes Biotech Inc. Berka RM ramb@novozymes.com BL 2004-09-13 Genome Biology 5, R77 Biotechnological, Medical, Human Pathogen 279010 12388 000397_GCAT 29491 128618 639279304 NC_006270, CP000002 Complete 4222 4371 1 0 46.2 International Facultative Rod-shaped Sporulating Mesophile gram+ Free living Food poisoning Soil Motile Subtilisin production, Pathogen, Amylase production Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XVIII. Incertae Sedis Symbiobacterium Symbiobacterium thermophilum BACTERIAL Symbiobacterium thermophilum IAM 14863 IAM 14863 Symbiobacterium thermophilum IAM 14863 IAM 14863 Yes Gc00212 Genome Complete and Published Public NIID, Nihon Univ, Kitasato Univ JSPS Ueda K ueda@brs.nihon-u.ac.jp STH 2004-09-07 Nucleic Acids Res 32, 4937-44 Biotechnological 292459 12994 000398_GCAT 278989 129288 637000306 NC_006177, AP006840 Complete 3566 3529 1 0 68.7 Japan Compost in Hiroshima, Japan Japan Hiroshima, Japan 34.385203 132.455293 Anaerobe Rod-shaped Nonsporulating Thermophile gram+ Free living None Soil 60 Nonmotile Symbiotic Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia garinii BACTERIAL Borrelia garinii PBi, OspA PBi, OspA 4 Borrelia garinii PBi Gc00211 Genome Complete and Published Public IMB, Jena Glockner G gernot@imb-jena.de BG 2004-08-30 NAR 32, 6038-6046 Medical, Human Pathogen 290434 12554 000399_GCAT 4174 643692009 CP000013, NC_006156 Complete 904 1013 1 2 28 Germany Cerebrospinal fluid of a patient with neuroborreliosis in Germany Germany Cerebrospinal fluid of a patient with neuroborreliosis in Germany Homo sapiens Patient with neuroborreliosis Aerobe Spiral-shaped Mesophile gram- Free living Lyme disease Host Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pseudotuberculosis BACTERIAL Yersinia pseudotuberculosis IP32953 IP32953 I Yersinia pseudotuberculosis IP 32953 Gc00210 Genome Complete and Published Public Lawrence Livermore National Lab, Institut Pasteur DOE Lamerdin J lamerdin1@llnl.gov 2004-08-30 PNAS 101, 13826-31 Animal Pathogen, Swine Pathogen, Medical 273123 12950 000400_GCAT 128942 637000355 NC_006155, AE008692 Complete 4744 4285 1 2 47.6 International Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Food poisoning, Gastroenteritis Fresh water, Soil, Host 28 - 30 Motile Pathogen Heterotroph Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma hyopneumoniae BACTERIAL Mycoplasma hyopneumoniae 232 232 Mycoplasma hyopneumoniae 232 Gc00209 Genome Complete and Published Public Iowa State Univ, Univ of Washington ARC, Bioproperties Pty. Ltd Minion C http://mycoplasmas.vm.iastate.edu/lab_site/ mhp 2004-08-30 J Bacteriology 186, 7123-33 Animal Pathogen, Swine Pathogen, Medical 295358 13120 000401_GCAT 103186 637000177 NC_006360, AE017332 Complete 892 761 1 0 28.6 USA Facultative Sphere-shaped Nonsporulating Mesophile gram+ Free living Singles Pneumonia, Porcine enzootic pneumonia Host 37 Nonmotile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia typhi BACTERIAL Rickettsia typhi Wilmington Wilmington Rickettsia typhi str. Wilmington ATCC VR-144 Yes Gc00208 Genome Complete and Published Public BCM-HGSC, Univ of Texas NIH-NIAID Weinstock G gweinsto@watson.wustl.edu RT 2004-08-20 J Bacteriology 186, 5842-55 Animal Pathogen, Medical, Human Pathogen 257363 10679 000402_GCAT 621685 137152 637000246 AE017197, NC_006142 Complete 1111 923 1 0 28.9 USA blood from patient, North Carolina, 1928 1928 USA Homo sapiens Patient Blood Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Typhus Host Nonmotile Pathogen Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobulbaceae Desulfotalea Desulfotalea psychrophila BACTERIAL Desulfotalea psychrophila LSv54 LSv54 Desulfotalea psychrophila LSv54 DSM 12343 Yes Gc00207 Genome Complete and Published Public REGX, Epidauros Biotechnologie AG BMBF Amann R ramann@mpi-bremen.de DP 2004-08-16 Environ. Microbiol. 6, 887-902 Biotechnological, Environmental, Carbon cycle 177439 12751 000023_GCAT 163127 10819 637000094 CR522870, NC_006138 Complete 3523 3417 1 2 46.6 Germany Marine sediments off of the coast of Svalbard Marine sediments off of the coast of Svalbard Anaerobe Rod-shaped Psychrophile gram- Free living None Marine, Sediment 10 Sulfur cycle, Sulfate reducer Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Microbacteriaceae Leifsonia Leifsonia xyli BACTERIAL Leifsonia xyli xyli CTCB07 CTCB07 Leifsonia xyli subsp. xyli str. CTCB07 Gc00206 Genome Complete and Published Public Univ of Campinas FAPESP Lxx 2004-08-04 Mol. Plant Microbe Interact 17, 827-836 Plant Pathogen, Agricultural 281090 212 000404_GCAT 108713 637000149 AE016822, NC_006087 Complete 2584 2406 1 0 67.7 Brazil Aerobe Rod-shaped Mesophile gram+ Free living Ratoon stunting Host 20 - 25 Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes M6 MGAS10394 M6 MGAS10394 M6 Streptococcus pyogenes MGAS10394 ATCC BAA-946 Gc00205 Genome Complete and Published Public RML-NIAID NIH Musser JM jmmusser@tmh.tmc.edu http://www.niaid.nih.gov/dir/labs/lhbp/musser.htm M 2004-08-03 J. Infect. 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ADP1 Gc00201 Genome Complete and Published Public Genoscope Genoscope Barbe V vbarbe@genoscope.cns.fr ACIAD 2004-07-09 NAR 32, 5766-5779 Medical, Human Pathogen 62977 12352 000409_GCAT 681508 128664 637000002 CR543861, NC_005966 Complete 3598 3433 1 0 40.4 France Derivatove of BD413 Derivatove of BD413 Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Nosocomial infection Fresh water, Human skin, Soil, Food 37 Nonmotile Pathogen Heterotroph, Chemoheterotroph Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Nakaseomyces Candida glabrata EUKARYAL Candida glabrata CBS 138 CBS 138 JCM 3761, CCRC 20586, ATCC 2001, IFO 0622, DBVPG 3828, CBS 138 Gc00200 Genome Complete and Published Public Genoscope, Institut Pasteur Genoscope, Institut Pasteur Thierry A athierry@pasteur.fr 2004-07-01 Nature 430, 35-44 Medical, Human Pathogen 284593 12381 000410_GCAT 93937 638208603 NC_006026-36, NC_005967-8 Complete 8x 12280 5397 13 0 0 Sanger France Human feces Homo sapiens Gastrointestinal tract Feces Mesophile Human candidasis Pathogen Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Debaryomyces Debaryomyces hansenii EUKARYAL Debaryomyces hansenii var. hansenii CBS 767 CBS 767 Debaryomyces hansenii CBS767 CBS 767, CCRC 21394, ATCC 36239, JCM 1990, DBVPG 6050. 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PG1 Gc00170 Genome Complete and Published Public Bielefeld Univ, National Veterinary Inst, Uppsala, Royal Institute of Technology, Stockholm SSF Uhlen M mathias@biotech.kth.se MSC 2004-02-03 Genome Res 14, 221-227 Animal Pathogen, Medical, Cattle Pathogen 272632 10616 000440_GCAT 206851 637000181 NC_005364 Complete 1211 1065 1 0 24 European Consortium Facultative Sphere-shaped Nonsporulating Mesophile gram+ Free living Singles Pleuropneumonia, Respiratory infection Host 37 Nonmotile BCPP, Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium avium BACTERIAL Mycobacterium avium paratuberculosis K-10 K-10 Mycobacterium avium subsp. paratuberculosis K-10 ATCC BAA-968 No Gc00169 Genome Complete and Published Public Univ of Minnesota USDA, Univ of Minnesota Agriculural Experiment Station Kapur V http://www.cvm.umn.edu/departments/vpb/faculty/kapur.htm MAP 2004-01-30 PNAS 102, 12344-9 Animal Pathogen, Medical, Cattle Pathogen 262316 91 000441_GCAT 501468 137555 637000168 AE016958, NC_002944 Complete 4829 4415 1 0 69.3 USA Bovine feces, isolated from a dairy herd, Wisconsin in the 1970's 1970's USA Diary herd in Wisconsin in the 1970's Bovine Gastrointestinal tract Feces Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Paratuberculosis, Johne's disease, Enteritis Host 37 Nonmotile Pathogen Chemoorganotroph Bacteria Proteobacteria Deltaproteobacteria Bdellovibrionales Bdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus BACTERIAL Bdellovibrio bacteriovorus HD100 HD100 Bdellovibrio bacteriovorus HD100 DSM 50701, ATCC 15356 Yes Gc00168 Genome Complete and Published Public Max Planck Institute Wellcome Trust, BBSRC Schuster SC http://www.eb.tuebingen.mpg.de/schuster/staff_schuster.htm 2004-01-30 Science 303, 689-682 Bacterial Pathogen, Medical, Biotechnological 264462 9637 000442_GCAT 268907 40800 637000030 BX842601, NC_005363 Complete 3782 3641 1 0 50.6 Germany Aerobe Curved-shaped Nonsporulating Mesophile gram- Free living Cell lysis Soil, Fresh water 28 - 30 Motile Predatory, Bacteriolytic, Ectoparasite Bacteria Tenericutes Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Onion yellows phytoplasma BACTERIAL Candidatus Phytoplasma onion yellows OY-M OY-M Onion yellows phytoplasma Onion yellows phytoplasma OY-M Gc00167 Genome Complete and Published Public Univ of Tokyo Namba, S snamba@ims.u-tokyo.ac.jp PAM 2003-12-16 Nature Genetics 36, 27-9 Plant Pathogen, Agricultural 262768 9615 000443_GCAT 108383 637000202 NC_005303 Complete 860 796 1 0 27.7 Japan Saga Prefecture Japan in 1982 1982 Japan Saga Prefecture Japan in 1982 Aerobe Mesophile gram+ Symbiotic Endosymbiotic intracellular Parasitic Onions yellow Host Pathogen Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Geobacteraceae Geobacter Geobacter sulfurreducens BACTERIAL Geobacter sulfurreducens PCA PCA Geobacter sulfurreducens PCA ATCC 51573 Yes Gc00166 Genome Complete and Published Public Univ of Massachusetts, J. Craig Venter Institute DOE Methe BA bmethe@tigr.org 2003-12-14 Science 302, 1967-1969 Bioremediation, Generates electricity, Environmental, Biotechnological 243231 192 000444_GCAT 163030 10735 637000120 NC_002939, AE017180 Complete 3814 3587 1 0 60.9 USA Surface sediments of a hydrocarbon-contaminated ditch in Norman Oklahoma USA Surface sediments of a hydrocarbon-contaminated ditch in Norman Oklahoma 35.191213 -97.441347 Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Soil, Sediment 30 Motile Toxic metal reducer Chemolithotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bradyrhizobiaceae Rhodopseudomonas Rhodopseudomonas palustris BACTERIAL Rhodopseudomonas palustris CGA009 CGA009 Rhodopseudomonas palustris CGA009 ATCC BAA-98 Gc00165 Genome Complete and Published Public Institute of Molecular Genetics, Prague, DOE Joint Genome Institute DOE Stilwagen S stilwagen1@llnl.gov 2003-12-14 Nat Biotechnol 22, 55-61 Biotechnological, Hydrogen production, Energy production 258594 57 000445_GCAT 118953 136947 637000239 NC_005296 Complete 5459 4921 1 1 65 USA Facultative Rod-shaped Mesophile gram- Free living Singles None Soil, Fresh water 25 - 35 Motile Carbon dioxide fixation, Pollutant degrader Phototroph Eukaryota Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae EUKARYAL Caenorhabditis briggsae AF16 AF16 Caenorhabditis briggsae Gc00164 Genome Complete and Published Public Sanger Institute, Cold Spring Harbor Laboratory, Washington Univ NSF, Wellcome Trust, NIH Stein L lstein@cshl.org 2003-11-17 PLoS Biology 1, 166-192 6238 157 000446_GCAT 0 CAAC00000000 Complete Level 2: High-Quality Draft 10x 104000 19507 6 0 0 Sanger International Mesophile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium diphtheriae BACTERIAL Corynebacterium diphtheriae gravis NCTC 13129 NCTC 13129 gravis Corynebacterium diphtheriae NCTC 13129 NCTC 13129 Gc00163 Genome Complete and Published Public Sanger Institute, PHLS Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ DIP 2003-11-15 NAR 31, 6516-6523 Medical, Human Pathogen 257309 87 000447_GCAT 118780 637000082 NC_002935, BX248353 Complete 2488 2398 1 0 53.5 United Kingdom Pharyngeal membrane of a 72-year-old unimmunized UK female with clinical diphtheria acquired during a short Baltic cruise in 1997 1997 UK Pharyngeal membrane of a 72-year-old unimmunized UK female with clinical diphtheria acquired during a short Baltic cruise in 1997 Homo sapiens Female 72 years old Patient with clinical diphtheria Airways Pharyngeal mucosa Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Diphtheria, Respiratory infection Host Nonmotile Pathogen Chemoorganotroph Archaea Nanoarchaeota Nanoarchaeum Nanoarchaeum equitans ARCHAEAL Nanoarchaeum equitans Kin4-M Kin4-M Nanoarchaeum equitans Kin4-M Gc00162 Genome Complete and Published Public Celera Genomics, Diversa Diversa Noordewier M mick@diversa.com NEQ 2003-10-28 PNAS 100, 12984-8 Biotechnological 228908 9599 000448_GCAT 125020 638154511 NC_005213 Complete 490 643 1 31.6 USA Anaerobe Hyperthermophile gram- Symbiotic Ignicoccus None Hydrothermal vent, Marine Symbiont Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio vulnificus BACTERIAL Vibrio vulnificus YJ016 YJ016 Vibrio vulnificus YJ016 Gc00161 Genome Complete and Published Public Yang-Ming Univ, Taiwan NHRI Shih-Feng Tsai petsai@nhri.org.tw VV 2003-10-15 Genome Res 13, 2577-87 Medical, Fish Pathogen 196600 1430 000449_GCAT 379912 128588 637000337 NC_005139, NC_005140 Complete 5211 5224 2 0 46.8 Taiwan Hospital isolate from Taiwan Taiwan Hospital isolate from Taiwan Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile Halophile gram- Free living Singles Septicemia, Gastroenteritis, Food poisoning Fresh water 20 - 30 Motile Pathogen Heterotroph Bacteria Cyanobacteria Gloeobacteria Gloeobacterales Gloeobacter Gloeobacter violaceus BACTERIAL Gloeobacter violaceus PCC 7421 PCC 7421 Gloeobacter violaceus PCC 7421 PCC 7421, DCC D0637, SAG 7.82, ATCC 29082 Gc00160 Genome Complete and Published Public Kazusa DNA Research Institute KDRI Tabata S tabata@kazusa.or.jp 2003-10-06 DNA Res 10, 137-145 Evolutionary, Biotechnological 251221 9606 000450_GCAT 106390 3564 637000121 NC_005125 Complete 4659 4491 1 0 62 Japan Calcereous rock in Switzerland Switzerland Calcereous rock in Switzerland Rod-shaped Mesophile gram- Free living None Soil, Fresh water Nonmotile Photoautotroph, Photosynthetic Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Photorhabdus Photorhabdus luminescens BACTERIAL Photorhabdus luminescens laumondii TT01 TT01 Photorhabdus luminescens subsp. laumondii TTO1 CIP 105565, DSM 15139, CCM 7076 Yes Gc00159 Genome Complete and Published Public Institut Pasteur INRA, Institut Pasteur, CNRS Kunst F fkunst@pasteur.fr plu 2003-10-05 Nature Biotech 21, 1307-1313 Biotechnological, Medical, Insect Pathogen 243265 9605 000451_GCAT 303432 95127 637000207 NC_005126 Complete 5688 5038 1 0 42.8 France Isolated from the nematode Heterorhabditis bacteriophora on Trinidad and Tobago Tobago Isolated on Trinidad and Tobago Heterorhabditis bacteriophora Facultative Rod-shaped Nonsporulating Mesophile gram- Symbiotic Heterorhabditis bacteriophora Toxemia, Septicemia Host Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Wolinella Wolinella succinogenes BACTERIAL Wolinella succinogenes DSM 1740 DSM 1740 Wolinella succinogenes DSM 1740 DSM 1740, ATCC 29543 Yes Gc00158 Genome Complete and Published Public Max Planck Institute Schuster SC stephan.schuster@tuebingen.mpg.de WS 2003-09-30 PNAS 100, 11690-5 Medical 273121 445 000452_GCAT 54181 128800 637000341 NC_005090 Complete 2110 2145 1 0 48.5 Germany Bovine rumen fluid Bovine rumen fluid Cow Gastrointestinal tract Rumen Anaerobe Spiral-shaped Mesophile gram- Free living None Rumen, Host Motile Non-Pathogen Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Chromobacterium Chromobacterium violaceum BACTERIAL Chromobacterium violaceum ATCC 12472 ATCC 12472 Chromobacterium violaceum ATCC 12472 ATCC 12472 Yes Gc00157 Genome Complete and Published Public Brazilian Genome CNPq, MCT Simpson AJG asimpson@node1.com.br CV 2003-09-18 PNAS 100, 11660-5 Antibiotic production, Biotechnological, Medical, Human Pathogen, Energy production 243365 444 000453_GCAT 6971 92928 637000074 AE016825, NC_005085 Complete 4751 4645 1 0 64.8 Brazil Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Septicemia, Diarrhea Host, Soil, Fresh water 25 Motile Pathogen, Volacein producer Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas gingivalis BACTERIAL Porphyromonas gingivalis W83 W83 Porphyromonas gingivalis W83 ATCC BAA-308 No Gc00156 Genome Complete and Published Public Forsyth Dental Center, J. Craig Venter Institute NIH-NIDR Nelson KE kenelson@tigr.org PG 2003-09-09 J. Bacteriol 185, 5591-5601 Medical, Human Pathogen 242619 48 000454_GCAT 494669 93824 637000209 NC_002950 Complete 2343 1988 1 0 48.3 USA Human clinical specimen from abscess, Bonn, Germany Germany Bonn, Germany 50.732705 7.096311 Homo sapiens Gastrointestinal tract Colon Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Dental plaque, Periodontal infection Colon, Gastrointestinal tract, Respiratory tract, Oral microflora, Host 37 Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium glutamicum BACTERIAL Corynebacterium glutamicum Kalinowski Kalinowski Corynebacterium glutamicum ATCC 13032 ATCC 13032, DSM 20300 Yes Gc00155 Genome Complete and Published Public Degussa, Bielefeld Univ BMBF Kalinowski J joern.kalinowski@genetik.uni-bielefeld.de cg 2003-09-04 J Biotechnol 104, 5-25 Amino acids production, Glutamate production, Food industry, Biotechnological 196627 13760 000455_GCAT 681596 137486 639279306 NC_006958, BX927147 Complete 3282 3244 1 0 53.8 Germany Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles None Normal microflora, Soil Nonmotile Fast growing Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 BACTERIAL Pseudomonas syringae tomato DC3000 DC3000 tomato Pseudomonas syringae pv. tomato str. DC3000 ATCC BAA-871 Gc00154 Genome Complete and Published Public Univ of Nebraska, Kansas State Univ, Univ of Missouri, Cornell Univ, J. Craig Venter Institute NSF Buell R rbuell@tigr.org PSPTO 2003-09-02 PNAS 100, 10181-6 Plant Pathogen, Agricultural 223283 359 000456_GCAT 493307 150510 637000225 NC_004578 Complete 6397 5796 1 2 58.4 USA tomato, Channel Islands, Guernsey, UK 1960 United Kingdom 49.5 -2.5 Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plant rot, Speck disease Endophyte, Soil, Fresh water, Host Motile Pathogen Heterotroph Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma gallisepticum BACTERIAL Mycoplasma gallisepticum R R Mycoplasma gallisepticum R Gc00153 Genome Complete and Published Public Univ of Connecticut Geary S.J http://cevr.uconn.edu/geary.html MGA 2003-09-01 Microbiology 149, 2307-2316 Animal Pathogen, Poultry Pathogen, Medical, Food industry 233150 409 000457_GCAT 89962 637000175 NC_004829 Complete 996 775 1 0 31.5 USA Facultative Sphere-shaped Nonsporulating Mesophile gram+ Free living Singles Respiratory infection Host 37 Motile Pathogen Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus pastoris CCMP1986 (MED4) CCMP1986 (MED4) Prochlorococcus marinus subsp. pastoris str. CCMP1986 CCMP1986 Gc00152 Genome Complete and Published Public DOE Joint Genome Institute DOE Chisholm SW chisholm@mit.edu 2003-08-13 Nature 424, 1042-7 Biotechnological, Ocean carbon cycle, Environmental 59919 213 000458_GCAT 527925 92037 637000214 NC_005072 Complete 1657 1768 1 0 30.8 USA 5m depth in Mediterranean Sea 5m depth in Mediterranean Sea Oval-shaped Mesophile gram- Free living None Marine Nonmotile High-light adapted Photosynthetic Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus MIT9313 MIT9313 Prochlorococcus marinus str. MIT 9313 RCC0407 Gc00151 Genome Complete and Published Public DOE Joint Genome Institute DOE Chisholm SW chisholm@mit.edu 2003-08-13 Nature 424, 1042-7 Ocean carbon cycle, Environmental, Biotechnological 74547 220 000459_GCAT 3348 637000211 NC_005071 Complete 2410 2340 1 0 50.7 USA Oval-shaped Mesophile gram- Free living None Marine Nonmotile Low light adapted Photosynthetic Bacteria Cyanobacteria Chroococcales Synechococcus BACTERIAL Prochlorococcus sp. WH8102 WH8102 Synechococcus sp. WH 8102 CCMP 2370 No Gc00150 Genome Complete and Published Public Scripps Institute of Oceanography, DOE Joint Genome Institute DOE Palenik B bpalenik@ucsd.edu 2003-08-13 Nature 424, 1037-42 Biotechnological, Ocean carbon cycle, Environmental 84588 230 000460_GCAT 528814 92221 637000314 NC_005070 Complete 2434 2592 1 0 59.4 USA Sargasso Sea from Oceanus cruise 92, in 1981 Isolated by Waterbury,J 03/15/1981 Tropical Atlantic ocean in 1981 22.4950 -65.6000 Coccus-shaped Mesophile 1 - 2 um 1 - 2 um gram- Free living None Marine Motile Photosynthetic, Photoautotroph Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus marinus CCMP1375 (SS120) CCMP1375 (SS120) Prochlorococcus marinus subsp. marinus str. CCMP1375 CCMP1375 Gc00149 Genome Complete and Published Public Genoscope European Union Partensky F partensky@sb-roscoff Pro 2003-08-13 PNAS 100, 10020-5 Biotechnological, Ocean carbon cycle, Environmental 167539 419 000461_GCAT 278949 88136 637000213 NC_005042 Complete 1751 1935 1 0 36.4 France Oval-shaped Mesophile gram- Free living None Marine Nonmotile Very low light adapted Photosynthetic Bacteria Proteobacteria Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella bronchiseptica BACTERIAL Bordetella bronchiseptica RB50 RB50 Bordetella bronchiseptica RB50 ATCC BAA-588, NCTC-13252 Gc00148 Genome Complete and Published Public Sanger Institute, Univ of Cambridge Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ BB 2003-08-10 Nature Genetics 35, 32-40 Medical, Animal Pathogen 257310 24 000462_GCAT 494021 91984 637000032 BX470250, NC_002927 Complete 5338 5091 1 0 68.1 United Kingdom Rabbit Rabbit Rabbit Obligate aerobe Rod-shaped Mesophile gram- Free living Respiratory infection Host 35 - 37 Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella parapertussis BACTERIAL Bordetella parapertussis 12822 12822 Bordetella parapertussis 12822 NCTC-13253, ATCC BAA-587 Gc00147 Genome Complete and Published Public Sanger Institute, Univ of Cambridge Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ BPP 2003-08-10 Nature Genetics 35, 32-40 Animal Pathogen, Medical, Human Pathogen 257311 25 000463_GCAT 494019 91165 637000033 NC_002928, BX470249 Complete 4773 4452 1 0 68.1 United Kingdom Infected infant in Germany in 1993 1993 Germany Infected infant in Germany in 1993 Obligate aerobe Rod-shaped Mesophile gram- Free living Respiratory infection Host 35 - 37 Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella pertussis BACTERIAL Bordetella pertussis Tohama I Tohama I Bordetella pertussis Tohama I ATCC BAA-589, NCTC-13251 Gc00146 Genome Complete and Published Public Sanger Institute, Univ of Cambridge Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ BP 2003-08-10 Nature Genetics 35, 32-40 Medical, Human Pathogen strictly 257313 26 000464_GCAT 494022 137495 637000034 BX470248, NC_002929 Complete 4086 3833 1 0 67.7 United Kingdom Patient with whooping cough Patient with whooping cough Homo sapiens Patient with whooping cough Aerobe Rod-shaped Mesophile gram- Free living Respiratory infection Host 35 - 37 Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Candidatus Blochmannia BACTERIAL Candidatus Blochmannia floridanus Candidatus Blochmannia floridanus Gc00145 Genome Complete and Published Public Univ of Valencia MEC, EU Moya A andres.moya@uv.es Bfl 2003-08-05 PNAS 100, 9388-93 Pest control, Biotechnological 203907 443 000465_GCAT 191713 637000056 BX248583, NC_005061 Complete 705 672 1 0 27.4 Spain Rod-shaped Mesophile gram- Free living Camponotus floridanus None Endosymbiont, Insect endosymbiont, Host, Bacteriocytes 30 Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Cellulomonadaceae Tropheryma Tropheryma whipplei BACTERIAL Tropheryma whipplei Twist Twist type 2A Tropheryma whipplei str. Twist Gc00144 Genome Complete and Published Public Genoscope, CNRS Raoult D Didier.Raoult@medecine.univ-mrs.fr TWT 2003-08-01 Genome Res 13, 1800-1809 Medical, Human Pathogen 203267 95 000466_GCAT 304207 146972 637000331 NC_004572 Complete 5Kb, 20Kb Phred/Phrap/Consed 9.2x SelfID 927 867 1 0 46.3 France Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Whipple's disease Host 37 Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila pneumoniae BACTERIAL Chlamydophila pneumoniae TW-183 TW-183 Chlamydophila pneumoniae TW-183 ATCC VR-2282 Yes Gc00143 Genome Complete and Published Public ALTANA Pharmaceuticals ALTANA Pharmaceuticals Melchers K klaus.melchers@byk.de CpB 2003-07-25 Unpublished Medical, Human Pathogen 182082 420 000467_GCAT 302230 90574 637000071 AE009440, NC_005043 Complete 1225 1160 1 0 40.6 USA In 1965 from a child's conjunctiva during a trachoma vaccine trial in Taiwan 1965 Taiwan In 1965 from a child's conjunctiva during a trachoma vaccine trial in Taiwan Homo sapiens Child Eye Conjunctiva Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Respiratory infection, Pneumonia, Bronchitis, Heart disease, Pharyngitis Host 37 Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus ducreyi BACTERIAL Haemophilus ducreyi 35000HP 35000HP Haemophilus ducreyi 35000HP ATCC 700724, CCUG 43572 No Gc00142 Genome Complete and Published Public The Institute for Systems Biology, CRI, Ohio State Univ NIH-NIAID Munson RS http://www.med.ohio-state.edu/medmicro/pages/rsmunson.htm 2003-07-23 Unpublished Human Pathogen, Medical 233412 38 000468_GCAT 328755 145814 637000124 AE017143, NC_002940 Complete 1698 1860 1 0 38.2 USA Human skin,upper arm of an experimentally infected human subject 1994 Homo sapiens Skin Anaerobe Rod-shaped Mesophile gram- Free living Chancroid, Genital ulcer Host Nonmotile Pathogen Bacteria Planctomycetes Planctomycetacia Planctomycetales Planctomycetaceae Rhodopirellula Rhodopirellula baltica BACTERIAL Rhodopirellula baltica SH 1 SH 1 Rhodopirellula baltica SH 1 DSM 10527 Yes Gc00141 Genome Complete and Published Public REGX, Max Planck Institute BMBF Gloeckner FO http://www.mpi-bremen.de/molecol/fog/index.html RB 2003-07-08 PNAS 100, 8298-303 Environmental, Biotechnological 243090 413 000022_GCAT 381524 137345 637000236 NC_005027 Complete 7145 7414 1 0 55.4 Germany Kieler Bucht (a fiord near the city of Kiel in Germany) Germany Kieler Bucht (a fiord near the city of Kiel in Germany) 54.451262 10.261204 Aerobe Sphere-shaped Nonsporulating Mesophile gram- Free living None Marine 28 Motile Heterotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium efficiens BACTERIAL Corynebacterium efficiens YS-314T YS-314T Corynebacterium efficiens YS-314 DSM 44549 Yes Gc00140 Genome Complete and Published Public Ajinomoto Co., Inc, NITE NITE Gojobori T mailto:tgojobori@jbirc.aist.go.jp CE 2003-07-01 Genome Res 13, 1572-9 Biotechnological, Amino acids production 196164 305 000470_GCAT 291608 129195 637000083 NC_004369 Complete 3147 3046 1 2 63.1 Japan "Soils at Kanagawa, Japan in the late 1980's" 1980's Japan Soils at Kanagawa, Japan in the late 1980's 35.447507 139.642345 Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles None Soil 30 - 45 Nonmotile Chemoorganotroph Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter hepaticus BACTERIAL Helicobacter hepaticus 3B1 3B1 Helicobacter hepaticus ATCC 51449 ATCC 51449 Gc00139 Genome Complete and Published Public MWG-Biotech, MIT, Univ of Wuerzburg, GeneData PathoGenoMik, NIH Suerbaum S ssuerbaum@hygiene.uni-wuerzburg.de HH 2003-06-24 PNAS 100, 7901-7906 Animal Pathogen, Mice Pathogen, Medical 235279 185 000471_GCAT 45566 637000131 AE017125, NC_004917 Complete 1799 1921 1 0 35.9 Germany Intestinal tract Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Liver cancer, Gastric bowel disease, Hepatic inflammation, Hepatitis Intestinal microflora, Host 37 Motile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium bovis BACTERIAL Mycobacterium bovis AF2122/97(spoligotype 9) AF2122/97(spoligotype 9) Mycobacterium bovis AF2122/97 ATCC BAA-935 Gc00138 Genome Complete and Published Public Sanger Institute, Institut Pasteur MAFF, Wellcome Trust, Beowulf Genomics Gordon SV s.v.gordon@vla.defra.gsi.gov.uk Mb 2003-06-24 PNAS 100, 7877-7882 Animal Pathogen, Medical, Human Pathogen, Cattle Pathogen 233413 89 000472_GCAT 501447 637000169 BX248333, NC_002945 Complete 4345 4012 1 0 65.6 European Consortium In 1997 in the UK from a cow suffering necrotic lesions in lung and bronchomediastinal lymph nodes tuberculous cow with caseous lesions in lung and bronchomediastinal lymph nodes, Surrey, England, U.K. July 2, 1997 United Kingdom In 1997 in the UK from a cow suffering necrotic lesions in lung and bronchomediastinal lymph nodes Cow Sick with necrotic lesions in lung and bronchomediastinal lymph nodes Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host 37 Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes M3 (SSI-1) M3 (SSI-1) M3 Streptococcus pyogenes SSI-1 Gc00137 Genome Complete and Published Public Japanese Consortium JSPS Nakagawa I ichiro@dent.osaka-u.ac.jp SPs 2003-06-10 Genome Res 13, 1042-55 Medical, Human Pathogen 193567 301 000473_GCAT 128781 637000301 NC_004606 Complete 1894 1961 1 0 38.6 Japan Toxic-shock patient in Japan Japan Toxic-shock patient in Japan Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Necrotizing fasciitis, Rheumatic fever Host 30 - 35 Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis Ames Ames Bacillus anthracis str. Ames Gc00136 Genome Complete and Published Public J. Craig Venter Institute ONR, DOE, NIH-NIAID Read TD http://www.tigr.org/~tread/ 2003-05-01 Nature 423, 81-86 Medical, Biothreat 198094 309 000474_GCAT 128751 637000014 AE016877, NC_003997 Complete 5227 5569 1 0 35.4 USA Aerobe Rod-shaped Sporulating Mesophile gram+ Free living None Soil Motile Non-Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus DSM 31, ATCC 14579 DSM 31, ATCC 14579 Bacillus cereus ATCC 14579 ATCC 14579 Yes Gc00135 Genome Complete and Published Public INRA, Integrated Genomics Inc DARPA Ivanova N NNIvanova@lbl.gov BC 2003-05-01 Nature 423, 87-91 Biothreat, Medical, Human Pathogen 226900 384 000475_GCAT 4491 129093 637000017 NC_004722, AE016877 Complete 5411 5610 1 1 35.3 International Facultative Rod-shaped Sporulating Mesophile gram+ Free living Food poisoning Soil 25 - 35 Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas europaea BACTERIAL Nitrosomonas europaea IFO IFO Nitrosomonas europaea ATCC 19718 ATCC 19718 Gc00134 Genome Complete and Published Public DOE Joint Genome Institute DOE Chain P chain2@llnl.gov 2003-04-30 J. Bacteriol. 185, 2759-2773 Biotechnological, Wastewater treatment, Environmental 228410 52 000476_GCAT 140591 251028 637000195 NC_004757 Complete 2812 2631 1 0 50.7 USA Aerobe Mesophile gram- Free living None Soil, Fresh water Motile Nitrogen cycle, Carbon dioxide fixation, Nitrifying Chemolithoautotroph Bacteria Proteobacteria Gammaproteobacteria Legionellales Coxiellaceae Coxiella Coxiella burnetii BACTERIAL Coxiella burnetii Nine Mile phase I / RSA 493 Nine Mile phase I / RSA 493 Coxiella burnetii RSA 493 Gc00133 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID, DARPA Heidelberg JF jheidel@tigr.org CBU 2003-04-29 PNAS 100, 5455-60 Animal Pathogen, Medical, Human Pathogen, Biothreat 227377 41 000477_GCAT 83477 637000086 AE016828, NC_002971 Complete 1995 2220 1 1 42.7 USA Facultative Coccus-shaped Sporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Singles Food poisoning, Q fever Soil, Host 37 Motile Acidophile, Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Leptospiraceae Leptospira Leptospira interrogans BACTERIAL Leptospira interrogans lai 56601 56601 lai Leptospira interrogans serovar Lai str. 56601 Gc00132 Genome Complete and Published Public Chinese National Human Genome Center at Shanghai CNCBD Zhao G-P gpzhao@sibs.ac.cn L 2003-04-24 Nature 422, 888-93 Medical, Animal Pathogen 189518 293 000478_GCAT 148535 637000151 AE010301, AE010300, NC_004343, NC_004342 Complete 4690 4815 2 0 36 China Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Leptospirosis Host, Soil, Fresh water 28 - 30 Motile Pathogen Eukaryota Ascomycota Sordariomycetes Sordariales Sordariaceae Neurospora Neurospora crassa EUKARYAL Neurospora crassa OR74A OR74A Neurospora crassa OR74A Gc00131 Genome Complete and Published Public Univ of Kentucky, Univ of Kansas, Broad Institute, OGI School of Science & Engineering NSF Birren B bwb@genome.wi.mit.edu NCU 2003-04-23 Nature 422, 859-68 Fungal Genome Initiative (FGI) 367110 13841 000479_GCAT 640281015 AABX01000000 Complete Level 2: High-Quality Draft 10x 37097 10082 7 0 50.4 Sanger USA Mesophile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Shigella Shigella flexneri BACTERIAL Shigella flexneri 2457T 2457T 2a Shigella flexneri 2a str. 2457T ATCC 700930 Gc00130 Genome Complete and Published Public Univ of Wisconsin NIH-NIAID Blattner FR http://www.genetics.wisc.edu/research/blattner/blattner_f.html S 2003-04-23 Infect. Immun. 71, 2775-2786 Medical, Human Pathogen 198215 408 000480_GCAT 581834 129310 637000263 NC_004741 Complete 4599 4607 1 0 50.9 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Gastroenteritis, Dysenteria, Food poisoning Host 37 Motile Pathogen Chemoorganotroph Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila caviae BACTERIAL Chlamydophila caviae GPIC GPIC Chlamydophila caviae GPIC DSM 19441, ATCC VR-813 Yes Gc00129 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Read TD tread@tigr.org CCA 2003-04-15 NAR 31, 2134-2147 Animal Pathogen, Swine Pathogen, Medical 227941 228 000481_GCAT 302235 144863 637000066 AE015925, NC_003361 Complete 1173 1091 1 1 39.2 USA Guinea pig conjunctiva Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Pneumonia, Respiratory infection, Bronchitis, Pharyngitis Host 37 Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces avermitilis BACTERIAL Streptomyces avermitilis MA-4680 MA-4680 Streptomyces avermitilis MA-4680 NCIMB 12804, ATCC 31267, NRRL 8165 Yes Gc00128 Genome Complete and Published Public Univ of Tokyo, NIID, Kitasato Univ, NITE MEXT Omura S http://www.kuleuven.ac.be/gih/satoshi.htm SA 2003-04-14 Nat. Biotechnol 21, 526-31 Biotechnological, Antibiotic production 227882 189 000482_GCAT 181026 78360 637000304 NC_003155 Complete 9025 7785 1 1 70.7 Japan Soil sample collected in Shizuoka Prefecture Japan Japan Soil sample collected in Shizuoka Prefecture Japan 34.97712 138.383085 Aerobe Filament-shaped Sporulating Mesophile gram+ Free living None Soil 25 - 35 Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis V583 V583 Enterococcus faecalis V583 ATCC 700802 Gc00127 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Paulsen IT ipaulsen@tigr.org 2003-03-28 Science 299, 2071-4 Medical, Human Pathogen 226185 70 000483_GCAT 118519 147392 637000101 NC_004668, AE016830 Complete 3218 3393 1 3 37.5 USA Homo sapiens Gastrointestinal tract Intestinal tract Facultative Mesophile gram+ Free living Urinary infection, Bacteremia, Endocarditis Host, Intestinal microflora, Wastewater 37 Nonmotile Pathogen Chemoorganotroph Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron BACTERIAL Bacteroides thetaiotaomicron VPI-5482 VPI-5482 Bacteroides thetaiotaomicron VPI-5482 ATCC 29148 Yes Gc00126 Genome Complete and Published Public AstraZeneca, Washington Univ NIH, AstraZeneca Gordon JI jgordon@molecool.wustl.edu 2003-03-28 Science 299, 2074-6 Medical 226186 399 000484_GCAT 106468 85849 637000026 NC_004663, AE015928 Complete 6260 4922 1 1 42.8 USA Feces of a healthy adult Feces of a healthy adult Homo sapiens Adult Healthy Gastrointestinal tract Intestinal tract Obligate anaerobe Mesophile gram- Free living Peritonitis Intestinal microflora, Host Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Typhi Ty2 ATCC700931 ATCC700931 Typhi Ty2 Salmonella enterica subsp. enterica serovar Typhi str. Ty2 ATCC 700931 Gc00125 Genome Complete and Published Public Univ of Wisconsin NIH-NIAID Blattner FR http://www.genetics.wisc.edu/research/blattner/blattner_f.html t 2003-03-21 J. Bacteriol 185, 2330-7 Medical, Human Pathogen 209261 371 000485_GCAT 581835 148451 637000253 NC_004631 Complete 4791 4766 1 0 52 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Typhoid fever, Food poisoning, Gastroenteritis, Salmonellosis Fresh water, Soil, Host, Food 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus BACTERIAL Vibrio parahaemolyticus RIMD 2210633 RIMD 2210633 O3:K6 Vibrio parahaemolyticus RIMD 2210633 Gc00124 Genome Complete and Published Public Japanese Consortium, RIKEN JSPS Iida T iida@biken.osaka-u.ac.jp VP 2003-03-01 Lancet 361, 743-9 Medical, Human Pathogen 223926 360 000486_GCAT 377507 107846 637000335 NC_004605, NC_004603 Complete 5165 5052 2 0 45.3 Japan Clinical strain isolated in 1996 in Osaka Japan 1996 Japan Clinical strain isolated in 1996 in Osaka Japan 34.693738 135.502165 Homo sapiens Patient Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Gastroenteritis Fresh water 20 - 30 Motile Pathogen Heterotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Cellulomonadaceae Tropheryma Tropheryma whipplei BACTERIAL Tropheryma whipplei TW08/27 TW08/27 Tropheryma whipplei TW08/27 Gc00123 Genome Complete and Published Public , Sanger Institute, Univ of Birmingham, Stanford Univ Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ TW 2003-02-24 Lancet 361, 637-644 Medical, Human Pathogen 218496 354 000487_GCAT 80600 637000330 NC_004551 Complete 925 842 1 0 46.3 International Cerebrospinal fluid a woman who had suffered severe weight loss in Germany Germany Cerebrospinal fluid a woman who had suffered severe weight loss in Germany Homo sapiens Brain Cerebro-spinal fluid Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Whipple's disease Host 37 Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus plantarum BACTERIAL Lactobacillus plantarum WCFS1 WCFS1 Lactobacillus plantarum WCFS1 Gc00122 Genome Complete and Published Public Greenomics, Wageningen Centre for Food Sciences WCFS Kleerebezem M kleerebe@nizo.nl 2003-02-14 PNAS 100, 1990-5 Lactic acid production, Food industry, Biotechnological 220668 356 000488_GCAT 80507 637000141 NC_004567, AL935263 Complete 3308 3311 1 3 44.5 Netherlands Human saliva Human saliva Homo sapiens Oral Saliva Facultative Rod-shaped Mesophile gram+ Free living Chains None Intestinal microflora, Host 25 - 35 Nonmotile Probiotic Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia sibirica BACTERIAL Rickettsia sibirica 246 246 Rickettsia sibirica 246 ATCC VR-151 Yes Gc00121 Genome Complete and Published Public Univ of Maryland School of Medicine, CDC, Agencourt Bioscience NIH-NIAID Malek JA jamalek@agencourt.com 2003-02-06 NAR 32, 1059-1064 Medical, Human Pathogen 272951 1414 000489_GCAT 621684 5931 638341178 NZ_AABW00000000 Complete 1250 1270 1 0 32.5 USA Tick, Dermacentor nuttalli, USSR, about 1945 1945 Russia Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic North Asian tick typhus Host Nonmotile Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium tetani BACTERIAL Clostridium tetani Massachusetts E88 Massachusetts E88 Clostridium tetani E88 Gc00120 Genome Complete and Published Public Goettingen Genomics Laboratory German Ministry for Science and Culture Gottschalk G ggottsc@gwdg.de 2003-02-05 PNAS 100, 1316-21 Animal Pathogen, Medical, Human Pathogen 212717 81 000490_GCAT 128532 637000080 NC_004557, AE015927 Complete 2799 2572 1 1 29.6 Germany Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Tetanus Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xylella Xylella fastidiosa BACTERIAL Xylella fastidiosa-grape Temecula1 Temecula1 Xylella fastidiosa Temecula1 ATCC 700964 Gc00119 Genome Complete and Published Public AEG Brazilian Consortium USDA, FAPESP Van Sluys MA mavsluys@usp.br PD 2003-02-03 J. Bacteriol 185, 1018-1026 Plant Pathogen, Agricultural 183190 285 000491_GCAT 581964 79335 637000349 NC_004556 Complete 2519 2102 1 1 51.8 Brazil In 1998 from a naturally infected Californian grapevine 1998 USA In 1998 from a naturally infected Californian grapevine Grapevine Aerobe Rod-shaped Mesophile gram- Free living Singles Black rot, Citrus canker Host 26 - 28 Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Buchnera Buchnera aphidicola BACTERIAL Buchnera aphidicola BP BP Buchnera aphidicola str. Bp (Baizongia pistaciae) Gc00118 Genome Complete and Published Public CNB, Univ of Valencia, Centro de Astrobiologia, Spain European Social Funds Moya A andres.moya@uv.es bbp 2003-01-21 PNAS 100, 581-586 Biotechnological 224915 256 000492_GCAT 146724 639633012 NC_004545, AE016826 Complete 615 559 1 0 26 Spain Mesophile gram- Symbiotic Baizongia pistaciae None Endosymbiont, Insect endosymbiont, Host Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis BACTERIAL Staphylococcus epidermidis ATCC 12228 ATCC 12228 Staphylococcus epidermidis ATCC 12228 ATCC 12228 No Gc00117 Genome Complete and Published Public Shanghai Medical Univ, Chinese National Human Genome Center at Shanghai NSFC Wen Y-M ymwen@shmu.edu.cn SE 2003-01-02 Mol Microbiology 49, 1577-93 Medical 176280 279 000493_GCAT 53811 146872 637000281 NC_004461 Complete 2499 2677 1 6 32.1 China Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles None Host 30 - 37 Nonmotile Non-Biofilm forming, Non-Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bradyrhizobiaceae Bradyrhizobium Bradyrhizobium japonicum BACTERIAL Bradyrhizobium japonicum USDA110 USDA110 Bradyrhizobium japonicum USDA 110 CCRC 13528, BCRC 13528 No Gc00116 Genome Complete and Published Public Kazusa DNA Research Institute KDRI Kaneko, T kaneko@kazusa.or.jp 2002-12-31 DNA Research 9, 189-97 Agricultural 224911 17 000494_GCAT 84001 137054 637000038 NC_004463, BA000040 Complete 9105 8401 1 0 64.1 Japan Soybean nodule in 1957 in Florida USA 1957 USA Soybean nodule in 1957 in Florida USA Aerobe Rod-shaped Mesophile gram- Symbiotic Mutualistic Soybeans None Host 25 - 30 Motile Nitrogen fixation, Stores polyhydroxybutyrate Photosynthetic Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio vulnificus BACTERIAL Vibrio vulnificus CMCP6 CMCP6 Vibrio vulnificus CMCP6 CMCP6 Gc00115 Genome Complete and Published Public Chonnam National Univ NHRI VV 2002-12-23 Unpublished Medical, Fish Pathogen 216895 349 000495_GCAT 377508 146894 637000336 NC_004459, NC_004460 Complete 5211 4688 2 0 46 Korea Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Gastroenteritis, Septicemia Fresh water 20 - 30 Motile Pathogen Heterotroph Eukaryota Chordata Ascidiacea Enterogona Cionidae Ciona Ciona intestinalis EUKARYAL Ciona intestinalis Sea squirt Ciona intestinalis Gc00114 Genome Complete and Published Public DOE Joint Genome Institute DOE Rokhsar D dsrokhsar@lbl.gov 2002-12-13 Science 298,2157-67 Evolutionary 7719 166 000496_GCAT 0 AABS00000000 Complete Level 2: High-Quality Draft 8.2x 116700 16000 14 0 0 Sanger USA Mesophile None Fresh water Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O6:K2:H1 CFT073 (UPEC) CFT073 (UPEC) O6:K2:H1 Escherichia coli CFT073 ATCC 700928 No Gc00113 Genome Complete and Published Public Univ of Wisconsin NIH-NIAID Blattner FR http://www.genetics.wisc.edu/research/blattner/blattner_f.html c 2002-12-09 PNAS 99, 17020-4 Human Pathogen, Medical 199310 313 000497_GCAT 118707 146635 637000105 AE014075, NC_004431 Complete 5231 5664 1 0 50.5 USA blood and urine from a woman with acute pyelonephritis, Baltimore Maryland UPEC Pathotype USA 39.294255 -76.614275 Homo sapiens Female Patient with acute pyelonephritis Blood Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Urinary infection, Cystitis, Pyelonephritis Human intestinal microflora, Host 37 Motile Pathogen Eukaryota Chordata Mammalia Rodentia Muridae Mus EUKARYAL Mus musculus C57BL/6J C57BL/6J Mus musculus Gc00112 Genome Complete and Published Public International Collaboration, Sanger Institute, BCM-HGSC, Genoscope, Washington Univ NIH Gibbs R ragibbs@bcm.tmc.edu 2002-12-05 Nature 420, 520-62 Model organism 10090 13183 000498_GCAT 639370800 NC_000067-87 Complete Level 2: High-Quality Draft 5x 2644093 39625 20 0 41.7 International Mesophile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida BACTERIAL Pseudomonas putida KT2440 KT2440 Pseudomonas putida KT2440 ATCC 47054, DSM 6125 No Gc00111 Genome Complete and Published Public German Consortium, J. Craig Venter Institute DOE, BMBF Nelson KE http://www.tigr.org/~kenelson/ PP 2002-12-03 Env Microbiology 4, 799-808 Environmental, Bioremediation 160488 267 000499_GCAT 113525 637000222 NC_002947 Complete 6181 5501 1 0 61.5 International Derived from a toluene-degrading isolate Derived from a toluene-degrading isolate Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Soil Motile Non-Pathogen, Saprophyte Heterotroph Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma penetrans BACTERIAL Mycoplasma penetrans HF-2 HF-2 Mycoplasma penetrans HF-2 Gc00110 Genome Complete and Published Public NIID, Kitasato Univ, RIKEN JSPS Sasaki Y yuko@nih.go.jp MYPE 2002-12-01 NAR 30, 5293-5300 Medical, Human Pathogen 272633 176 000500_GCAT 76821 637000182 NC_004432 Complete 1358 1104 1 0 25.7 Japan Facultative Sphere-shaped Nonsporulating Mesophile gram+ Free living Singles Respiratory infection, Urogenital infection Host 37 Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mutans BACTERIAL Streptococcus mutans UA159 UA159 C Streptococcus mutans UA159 ATCC 700610 Gc00109 Genome Complete and Published Public Univ of Oklahoma, Ohio State Univ NIH-NIDCR Ferretti,J.J Joe-Ferretti@ouhsc.edu SMU 2002-10-29 PNAS 99,14434-14439 Dental Pathogen, Medical, Human Pathogen 210007 333 000501_GCAT 118212 637000288 NC_004350 Complete 2030 2135 1 0 36.8 USA Child with active dental caries in 1982 1982 Child with active dental caries in 1982 Homo sapiens Child Patient with actve dental caries Oral Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Dental caries Host 37 Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum BACTERIAL Bifidobacterium longum NCC2705 NCC2705 Bifidobacterium longum NCC2705 NCC2705 Gc00108 Genome Complete and Published Public Univ of Georgia, Nestle Nestle Schell MA http://www.uga.edu/mib/mschell.htm 2002-10-29 PNAS 99,14422-14427 Food industry, Biotechnological 206672 328 000502_GCAT 327509 637000031 NC_004307, AE014295 Complete 2256 1813 1 1 60.1 International Infant feces Infant feces Homo sapiens Infant Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Intestinal microflora, Host 37 - 41 Nonmotile Non-Pathogen, Probiotic Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Wigglesworthia Wigglesworthia glossinidia BACTERIAL Wigglesworthia glossinidia P-endosymbiont P-endosymbiont Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis Gc00107 Genome Complete and Published Public Kitasato Univ, RIKEN, Yale Univ NIH, JSPS Aksoy S http://info.med.yale.edu/eph/html/faculty_members/aksoy.html WG 2002-10-24 Nature Genetics 32,402-407 Evolutionary, Biotechnological 36870 274 000503_GCAT 141977 637000338 NC_004344 Complete 697 699 1 1 22 International Mesophile gram- Symbiotic Endosymbiotic intracellular Glossina brevipalpis None Endosymbiont, Insect endosymbiont, Host Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Shigella Shigella flexneri BACTERIAL Shigella flexneri 301 301 2a Shigella flexneri 2a str. 301 Gc00106 Genome Complete and Published Public Microbial Genome Center, Beijing Chinese Ministry of Public Health Jin Q zdsys@sina.com 2002-10-16 NAR 30, 4432-4441 Biothreat, Medical, Human Pathogen 198214 310 000504_GCAT 128448 637000264 NC_004337 Complete 4607 4873 1 1 50.9 China In 1984 from a patient in Beijing China 1984 China In 1984 from a patient in Beijing China 39.908173 116.397947 Homo sapiens Patient Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Shigellosis, Dysenteria, Food poisoning Host 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella oneidensis BACTERIAL Shewanella oneidensis MR-1 MR-1 Shewanella oneidensis MR-1 ATCC 700550 Yes Gc00105 Genome Complete and Published Public J. Craig Venter Institute DOE Heidelberg JF jheidel@tigr.org SO 2002-10-07 Nature Biotechnology 20, 1118-1123 Bioremediation, Environmental, Biotechnological 211586 335 000505_GCAT 121993 57778 637000258 NC_004347 Complete 4969 4673 1 1 46 USA "Sediment; anaerobic; Mn(IV) reduction, Oneida lake in New York" USA Oneida lake in New York 43.204557 -75.923098 Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Sediment, Fresh water Motile Metal reducer, Opportunistic Pathogen Heterotroph Eukaryota Arthropoda Insecta Diptera Culicidae Anopheles Anopheles gambiae EUKARYAL Anopheles gambiae PEST PEST Anopheles gambiae str. PEST Gc00104 Genome Complete and Published Public Celera Genomics, Genoscope NIH-NIAID AnoDB AnoDB-comments@imbb.forth.gr 2002-10-04 Science 298, 129-149 180454 1438 000506_GCAT 639591500 AAAB01000000 Complete Level 2: High-Quality Draft 10x 278000 13683 5 0 44 Sanger International Mesophile Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium Plasmodium yoelii EUKARYAL Plasmodium yoelii yoelii 17XNL 17XNL Plasmodium yoelii yoelii str. 17XNL Gc00103 Genome Complete and Published Public NMRC, J. Craig Venter Institute DOD Carlton JM carlton@tigr.org 2002-10-03 Nature 419, 512-519 Animal Pathogen, Rodent Pathogen, Medical 352914 1436 000507_GCAT 640281013 AABL01000000 Complete Level 2: High-Quality Draft 5x 20086 7910 14 0 22.6 Sanger USA Mesophile Malaria Host Parasite, Pathogen Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium Plasmodium falciparum EUKARYAL Plasmodium falciparum 3D7 3D7 Plasmodium falciparum 3D7 Gc00102 Genome Complete and Published Public Malaria Genome Project Consortium Wellcome Trust, MRMC, NIH-NIAID, Naval Medical Research Center, Burroughs Wellcome Fund Gardner MJ gardner@tigr.org 2002-10-03 Nature 419, 498-511 Medical, Human Pathogen 36329 13173 000508_GCAT 638269502 NC_004314-31 Complete 22859 5268 14 0 19.4 Sanger International Mesophile Malaria Host Parasite, Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella suis BACTERIAL Brucella melitensis bv suis 1330 1330 1 Brucella suis 1330 NCTC 10316, ATCC 23444 No Gc00101 Genome Complete and Published Public J. Craig Venter Institute DARPA, NIH-NIAID Paulsen I http://www.bio.jhu.edu/Directory/Faculty/Paulsen/Default.html BR 2002-10-01 PNAS 99, 13148-13153 Animal Pathogen, Medical, Human Pathogen, Biothreat 204722 320 000509_GCAT 675075 56114 637000042 AE014291, NC_004310, AE014292, NC_004311 Complete 3310 3417 2 0 57.3 USA Swine isolate Swine isolate Swine Aerobe Nonsporulating Mesophile gram- Free living Infectious abortions, Brucellosis, Fever Host 37 Nonmotile Facultative intracellular, Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae BACTERIAL Streptococcus agalactiae NEM316 NEM316 III/III Streptococcus agalactiae NEM316 Gc00100 Genome Complete and Published Public Institut Pasteur MENRT Kunst F fkunst@pasteur.fr gbs 2002-09-30 Mol Microbiol 45, 1499-513 Medical, Human Pathogen 211110 334 000510_GCAT 128729 637000287 NC_004368 Complete 2211 2268 1 0 35.6 France Case of fatal septicemia Case of fatal septicemia Homo sapiens Patient with fatal septicemia Blood Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Meningitis Host 37 Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Oceanobacillus Oceanobacillus iheyensis BACTERIAL Oceanobacillus iheyensis HTE831 HTE831 Oceanobacillus iheyensis HTE831 JCM 11309, DSM 14371 Yes Gc00099 Genome Complete and Published Public JAMSTEC Takami H takamih@jamstec.go.jp OB 2002-09-07 NAR 30, 3927-3935 Biotechnological 221109 284 000511_GCAT 303306 14611 637000201 NC_004193 Complete 3630 3736 1 0 35.7 Japan Deep sea mud at 1050m depth from the Iheya ridge near Okinawa Japan in 1998 1998 Japan Deep sea mud at 1050m depth from the Iheya ridge near Okinawa Japan in 1998 Aerobe Rod-shaped Sporulating Mesophile Halotolerant gram+ Free living None Soil 30 Motile Alkalophile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae BACTERIAL Streptococcus agalactiae 2603V/R 2603V/R V/V Streptococcus agalactiae 2603V/R ATCC BAA-611 No Gc00098 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Tettelin HS http://www.tigr.org/~tettelin/ 2002-08-28 PNAS 99, 12391-12396 Medical, Human Pathogen 208435 330 000512_GCAT 494127 55977 637000285 NC_004116 Complete 2160 2344 1 0 35.6 USA clinical isolate Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Septicemia, Meningitis, Pneumonia Host 37 Nonmotile Pathogen Eukaryota Chordata Actinopterygii Tetraodontiformes Tetraodontidae Takifugu EUKARYAL Takifugu rubripes Fugu Takifugu rubripes Gc00097 Genome Complete and Published Public International Collaboration, DOE Joint Genome Institute DOE, MRC Aparicio S saa1000@cam.ac.uk 2002-08-22 Science 297, 1301-10 Evolutionary 31033 1434 000513_GCAT 0 CAAB01000000 Complete Level 2: High-Quality Draft 400000 22000 0 International Mesophile None Bacteria Cyanobacteria Chroococcales Thermosynechococcus Thermosynechococcus elongatus BACTERIAL Thermosynechococcus elongatus BP-1 BP-1 Thermosynechococcus elongatus BP-1 Gc00096 Genome Complete and Published Public Kazusa DNA Research Institute KDRI Kaneko, T kaneko@kazusa.or.jp 2002-08-19 DNA Res 9, 123-30 Biotechnological 197221 308 000514_GCAT 107856 637000320 NC_004113 Complete 2593 2557 1 0 53.9 Japan Beppu hot spring in Japan Japan Beppu hot spring in Japan 33.318279 131.45264 Rod-shaped Thermophile gram- Free living None Hot spring, Fresh water 55 Photosynthetic, Photoautotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Mediaevalis KIM10+ KIM10+ Mediaevalis Yersinia pestis KIM Gc00095 Genome Complete and Published Public Univ of Wisconsin NIH-NIAID Blattner FR http://www.genetics.wisc.edu/research/blattner/blattner_f.html 2002-07-29 J. Bacteriol 184, 4601-4611 Biothreat, Medical, Human Pathogen 187410 288 000515_GCAT 63174 637000352 NC_004088 Complete 4600 4391 1 1 47.6 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic plague Host 28 - 30 Motile Pathogen Heterotroph Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes MGAS315 MGAS315 M3 Streptococcus pyogenes MGAS315 ATCC BAA-595 Gc00094 Genome Complete and Published Public RML-NIAID, Univ of Minnesota NIH Musser JM jmmusser@tmh.tmc.edu http://www.niaid.nih.gov/dir/labs/lhbp/musser.htm SpyM 2002-07-16 PNAS 99, 10078-10083 Medical, Human Pathogen 198466 311 000516_GCAT 352256 73813 637000296 NC_004070 Complete 1900 2053 1 0 38.6 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Rheumatic fever Host 30 - 35 Nonmotile Pathogen Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei ARCHAEAL Methanosarcina mazei Go1 OCM 88 Go1 OCM 88 Methanosarcina mazei Go1 DSMZ 3647, ATCC BAA-199 Gc00093 Genome Complete and Published Public Goettingen Genomics Laboratory, Integrated Genomics Inc Ministry of Lower Saxony, MWK Gottschalk G ggottsc@gwdg.de 2002-07-10 J. Mol. Micro. Biotechnol. 4, 453-461 Biotechnological, Environmental, Energy production, Carbon cycle 192952 300 000517_GCAT 118991 129054 638154509 NC_003901 Complete 4096 3526 1 0 41.5 International Feces Anaerobe Coccus-shaped Nonsporulating Mesophile 5.5 - 8 gram- Free living None Feces, Mud, Sludge, Soil 30 - 40 Nonmotile Methanogen Lithotroph Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum tepidum BACTERIAL Chlorobium tepidum TLS TLS Chlorobium tepidum TLS DSM 12025, ATCC 49652 Yes Gc00092 Genome Complete and Published Public J. 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35 Nonmotile Pathogen Archaea Euryarchaeota Methanopyri Methanopyrales Methanopyraceae Methanopyrus Methanopyrus kandleri ARCHAEAL Methanopyrus kandleri AV19 AV19 Methanopyrus kandleri AV19 DSM 6324 Yes Gc00080 Genome Complete and Published Public Fidelity Systems Inc DOE, NIH Slesarev AI alex@fidelitysystems.com MK 2002-04-02 PNAS 99, 4644-4649 Biotechnological, Environmental, Energy production, Carbon cycle 190192 294 000530_GCAT 159947 64372 638154507 NC_003551 Complete 1694 1768 1 0 61.2 USA Black smoker from the Gulf of California at a depth of 2000m Black smoker from the Gulf of California at a depth of 2000m Anaerobe Rod-shaped Nonsporulating Hyperthermophile 5.5 - 7 gram- Free living None Marine 80 - 101 Methanogen Lithotroph Eukaryota Ascomycota Schizosaccharomycetes Schizosaccharomycetales Schizosaccharomycetaceae Schizosaccharomyces Schizosaccharomyces pombe EUKARYAL Schizosaccharomyces pombe 972h 972h Schizosaccharomyces pombe 972h- Gc00079 Genome Complete and Published Public Sanger Institute, Cold Spring Harbor Laboratory European Union, Wellcome Trust, Cancer Research UK Rajandream MA mar@sanger.ac.uk 2002-02-21 Nature 415,871-80 Model organism 284812 13836 000531_GCAT 579442 638208610 NC_003421-4 Complete 8x 12533 5004 3 0 36 United Kingdom Mesophile Archaea Euryarchaeota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus furiosus ARCHAEAL Pyrococcus furiosus JCM 8422 JCM 8422 Pyrococcus furiosus DSM 3638 DSM 3638, ATCC 43587 Yes Gc00078 Genome Complete and Published Public Univ of Maryland, Univ of Utah DOE Robb FT robb@umbi.umd.edu 2002-02-12 Meth. Enzymol. 330:134-57 Biotechnological 186497 287 000532_GCAT 158448 108031 638154515 NC_003413 Complete 1908 2180 1 0 40.8 USA Shallow marine solfataric region at Vulcano Island Italy Italy Shallow marine solfataric region at Vulcano Island Italy Obligate anaerobe Coccus-shaped Nonsporulating Hyperthermophile 5 - 9 gram- Free living None Marine 70 - 103 Motile Sulfur respiration, Radiation resistant Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia solanacearum BACTERIAL Ralstonia solanacearum GMI1000 GMI1000 Ralstonia solanacearum GMI1000 ATCC BAA-1114 No Gc00077 Genome Complete and Published Public INRA, Genoscope, CNRS INRA, CNRS Boucher CA boucher@toulouse.inra.fr RS 2002-01-31 Nature 415,497-502 Agricultural, Plant Pathogen 267608 13 000533_GCAT 692465 158870 637000231 NC_003295 Complete 3716 5205 1 1 67 France wilted tomato plant, French Guyana 1960 French Guyana Aerobe Rod-shaped Mesophile gram- Free living Plant rot, Wilting disease Soil Motile Pathogen Heterotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium perfringens BACTERIAL Clostridium perfringens 13 13 Clostridium perfringens str. 13 Gc00076 Genome Complete and Published Public Kitasato Univ, Kyushu Univ, Univ of Tsukuba JSPS Shimizu T tshimizu@md.tsubuka.ac.jp 2002-01-22 PNAS 99, 996-1001 Animal Pathogen, Biothreat, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 195102 79 000534_GCAT 54809 637000079 NC_003366 Complete 3031 3020 1 1 28.6 Japan Soil isolate Soil isolate Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Necrotizing enterocolitis, Enteritis necroticans, Food poisoning, Gas gangrene Soil, Host 37 Motile Pathogen Chemoorganotroph Archaea Crenarchaeota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum aerophilum ARCHAEAL Pyrobaculum aerophilum IM2 IM2 Pyrobaculum aerophilum str. 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Craig Venter Institute MGRI, NIH-NIAID Fraser CM http://www.tigr.org/~cmfraser/ SP 2001-07-20 Science 293,498-506 Medical, Human Pathogen 170187 277 000552_GCAT 352345 129051 637000290 NC_003028 Complete 2160 2365 1 0 39.7 USA Blood of a 30 year old male patient in Kongsvinger Norway Norway Blood of a 30 year old male patient in Kongsvinger Norway 60.19256 11.992046 Homo sapiens Male 30 years old Patient Blood Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia, Meningitis, Otitis media Nasopharyngeal microflora, Host 30 - 35 Nonmotile Pathogen, Alpha-hemolytic Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus solfataricus ARCHAEAL Sulfolobus solfataricus P2 P2 Sulfolobus solfataricus P2 DSM 1617, ATCC 35092 No Gc00057 Genome Complete and Published Public Canadian Bioinformatics Resource, European Union National Research Council of Canada, European Union, Canadian Genome Analysis and Technology Garrett RA garrett@mermaid.molbio.ku.dk SSO 2001-07-03 PNAS 98,7835-7840 Biotechnological 273057 108 000553_GCAT 267483 54467 638154518 NC_002754 Complete 2992 3169 1 0 35.8 International Obligate aerobe Coccus-shaped Nonsporulating Hyperthermophile 2 - 4.5 gram- Free living Singles None Fresh water 50 - 87 Motile Sulfur metabolizing, Acidophile Lithotroph Bacteria Proteobacteria Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter vibrioides BACTERIAL Caulobacter crescentus CB15 CB15 Caulobacter crescentus CB15 ATCC 19089 Gc00056 Genome Complete and Published Public J. Craig Venter Institute DOE Nierman WC wnierman@tigr.org CC 2001-05-22 PNAS 98,4136-4141 Biogeochemical, Bioremediation, Wastewater treatment, Environmental, Biotechnological 190650 298 000554_GCAT 123019 137102 637000061 AE005673, NC_002696 Complete 4016 3867 1 0 67.2 USA Obligate aerobe Rod-shaped Mesophile gram- Free living Singles None Fresh water, Marine, Soil 35 Motile Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma pulmonis BACTERIAL Mycoplasma pulmonis UAB CTIP UAB CTIP Mycoplasma pulmonis UAB CTIP Gc00055 Genome Complete and Published Public Genoscope INRA, Genoscope, Institut Pasteur Blanchard A ablancha@bordeaux.inra.fr MYPU 2001-05-15 NAR 29, 2145-2153 Medical, Animal Pathogen 272635 100 000555_GCAT 49947 637000184 NC_002771 Complete 963 853 1 0 26.6 France Laboratory strain Laboratory strain Facultative Sphere-shaped Nonsporulating Mesophile gram+ Free living Singles Genital infection, Respiratory infection Host 37 Motile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis BACTERIAL Lactococcus lactis lactis IL1403 IL1403 Lactococcus lactis subsp. lactis Il1403 Gc00054 Genome Complete and Published Public INRA, Genoscope INRA Sorokin A sorokine@diamant.jouy.inra.fr L 2001-05-10 Genome Research 11, 731-753 Biotechnological, Food industry, Cheese production 272623 72 000556_GCAT 128821 637000144 NC_002662, AE005176 Complete 2365 2507 1 0 35.3 France Cheese starter culture Cheese starter culture Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living None Host 40 Nonmotile Archaea Euryarchaeota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus abyssi ARCHAEAL Pyrococcus abyssi GE5 GE5 Pyrococcus abyssi GE5 Gc00053 Genome Complete and Published Public Genoscope, IGBMC INSERM, CNRS Poch O poch@igbmc.u-strasbg.fr 2001-05-08 Genome Res 11, 981-93 Biotechnological 272844 179 000557_GCAT 101303 638154514 NC_000868 Complete 1765 2059 1 1 44.7 France Active chimney in the North Fiji Basin of the Pacific Ocean at a depth of 3500m Japan Active chimney in the North Fiji Basin of the Pacific Ocean at a depth of 3500m Obligate anaerobe Coccus-shaped Nonsporulating Hyperthermophile gram- Free living None Marine, Deep sea 67 - 103 Motile Sulfur respiration, Barophile Eukaryota Cryptophyta Cryptomonadaceae Guillardia Guillardia theta EUKARYAL Guillardia theta Guillardia theta Gc00052 Genome Complete and Published Public Philipps-Univ Marburg, Univ of British Columbia, Canadian Institute of Advanced Research DFG, NERC, NSERC Cavalier-Smith T cavalier-smith@zoo.ox.ac.uk 2001-04-26 Nature 410, 1091-1096 Model organism 55529 210 000558_GCAT 638269501 NCBI Complete 551 464 3 0 26 International Mesophile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus Mu50 (VRSA) Mu50 (VRSA) Staphylococcus aureus subsp. aureus Mu50 ATCC 700699 Gc00051 Genome Complete and Published Public Univ of Tokyo, ONRI, Kyushu Univ, RIKEN, Kitasato Univ, Juntendo Univ, Kyoto Univ, Univ of Tsukuba, NITE JSPS, NITE Hiramatsu K hiram@med.juntendo.ac.jp SAV 2001-04-21 The Lancet 357, 1225-1240 Animal Pathogen, Cattle Pathogen, Poultry Pathogen, Medical, Human Pathogen 158878 263 000559_GCAT 118360 132800 637000277 NC_002758 Complete 2878 2915 1 1 32.9 Japan Pus of a Japanese male baby with a surgical wound infection that did not respond to vancomycin in 1997 1997 Japan Pus of a Japanese male baby with a surgical wound infection that did not respond to vancomycin in 1997 Homo sapiens Male Baby Patient with surgical wound infection Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Phlebitis, Osteomyelitis, Deep abscesses, Meningitis, Mastitis, Endocarditis, Nosocomial infection Host 30 - 37 Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus N315 (MRSA) N315 (MRSA) Staphylococcus aureus subsp. aureus N315 Gc00050 Genome Complete and Published Public Univ of Tokyo, ONRI, Kyushu Univ, RIKEN, Kitasato Univ, Juntendo Univ, Kyoto Univ, Univ of Tsukuba, NITE NITE Hiramatsu K hiram@med.juntendo.ac.jp SA 2001-04-21 The Lancet 357,1225-1240 Animal Pathogen, Cattle Pathogen, Poultry Pathogen, Medical, Human Pathogen 158879 264 000560_GCAT 138516 637000278 NC_002745 Complete 2813 2746 1 1 32.8 Japan Pharyngeal smear of a Japanese patient in 1982 1982 Japan Pharyngeal smear of a Japanese patient in 1982 Homo sapiens Patient with surgical wound infection Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Phlebitis, Osteomyelitis, Deep abscesses, Meningitis, Mastitis, Endocarditis, Nosocomial infection Host 30 - 37 Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes GAS SF370 GAS SF370 M1 Streptococcus pyogenes M1 GAS ATCC 700294 Gc00049 Genome Complete and Published Public Univ of Oklahoma NIH-NIAID Ferretti JJ Joe-Ferretti@ouhsc.edu SPy 2001-04-10 PNAS 98,4658-4663 Medical, Human Pathogen strictly 160490 269 000561_GCAT 117801 48689 637000291 NC_002737 Complete 1852 1903 1 0 38.5 USA Patient with a wound infection Patient with a wound infection Homo sapiens Patient with surgical wound infection Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Tonsillitis, Sinusitis, Rheumatic fever, Mastoiditis, Pharyngitis, Otitis, Pneumonia Nasopharyngeal microflora, Host 30 - 35 Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurella Pasteurella multocida BACTERIAL Pasteurella multocida Pm70 type A Pm70 type A 3 Pasteurella multocida subsp. multocida str. 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Sakai Gc00046 Genome Complete and Published Public Japanese Consortium, RIKEN JSPS Hayashi T thayash@fc.miyazaki-med.ac.jp 2001-02-27 DNA Research 8, 11-22 Animal Pathogen, Medical, Human Pathogen, Biothreat 386585 226 000564_GCAT 637000108 NC_002695 Complete 5598 5565 1 1 50.5 Japan Outbreak in 1982 in Sakai Japan Pathotype EHEC 1982 Japan Outbreak in 1982 in Sakai Japan 36.459511 138.175003 Homo sapiens Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs Hemorrhagic colitis, Enterohaemorrhagic, Food poisoning Host, Human intestinal microflora 37 Motile Pathogen, Enterohemorrhagic Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium leprae BACTERIAL Mycobacterium leprae TN TN Mycobacterium leprae TN Gc00045 Genome Complete and Published Public Sanger Institute, Institut Pasteur The New York Community Trust, Amici di Raoul Follereau Cole ST stcole@pasteur.fr ML 2001-02-22 Nature 409, 1007-1011 Medical, Human Pathogen 272631 90 000565_GCAT 108810 637000170 AL450380, NC_002677 Complete 3268 2749 1 0 57.8 European Consortium Armadillo in Tamil Nadu India India Armadillo in Tamil Nadu India 11.127123 78.656894 Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Hanson's disease, Leprosy Host 37 Nonmotile Pathogen Chemoorganotroph Eukaryota Chordata Mammalia Primates Hominidae Homo EUKARYAL Homo sapiens Homo sapiens Gc00044 Genome Complete and Published Public International Collaboration Wellcome Trust Lander ES lander@genome.wi.mit.edu 2001-02-15 Nature 409,860-921 9606 9558 000566_GCAT 639332100 24 Chromosomes Complete Level 2: High-Quality Draft 3080436 38612 24 0 40.9 International Aerobe Mesophile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 EDL933 (EHEC) EDL933 (EHEC) Escherichia coli O157:H7 EDL933 ATCC 700927 No Gc00043 Genome Complete and Published Public Univ of Wisconsin NIH-NHGRI, NIH-NIAID Perna NT perna@ahabs.wisc.edu 2001-01-25 Nature 409,529-533 Biothreat, Medical, Human Pathogen 155864 259 000567_GCAT 118705 150513 637000107 NC_002655, AE005174 Complete 5528 5643 1 2 50.4 USA raw hamburger meat implicated in hemorrhagic colitis outbreak 1982 Outbreak in 1982 Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Hemorrhagic colitis, Enterohaemorrhagic, Hamburger disease Host, Human intestinal microflora 25 - 35 Motile Pathogen Archaea Euryarchaeota Thermoplasmata Thermoplasmatales Thermoplasmataceae Thermoplasma Thermoplasma volcanium ARCHAEAL Thermoplasma volcanium GSS1 GSS1 Thermoplasma volcanium GSS1 ATCC 51530, DSM 4299 Yes Gc00042 Genome Complete and Published Public AIST JST Suzuki M sbcsuzuk@nibh.go.jp T 2000-12-19 PNAS 97, 14257-14262 Biotechnological 273116 206 000568_GCAT 304114 47351 638154522 NC_002689 Complete 1584 1660 1 0 39.9 Japan Acidic hydrothermal vents on the shore of Aeolian Island of Vulcano Italy Italy Acidic hydrothermal vents on the shore of Aeolian Island of Vulcano Italy 38.4879 14.9456 Facultative Rod-shaped Nonsporulating Thermophile 1 - 4 gram- Free living None Hydrothermal vent, Marine, Solfataric field 33 - 67 Motile Acidophile Eukaryota Streptophyta Brassicales Brassicaceae Arabidopsis EUKARYAL Arabidopsis thaliana Columbia Columbia Arabidopsis thaliana Gc00041 Genome Complete and Published Public International Collaboration DOE, USDA, NSF, European Union, KDRI TIGR genomeanalysis@tigr.org 2000-12-14 Nature 408,796-815 Model organism, Agricultural 3702 13190 000569_GCAT 639560100 5 chromosomes Complete Level 2: High-Quality Draft 119707 26735 5 0 36 International Aerobe Mesophile Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium loti BACTERIAL Mesorhizobium loti MAFF303099 MAFF303099 Mesorhizobium loti MAFF303099 JSM 21590, MAFF303099 Gc00040 Genome Complete and Published Public Kazusa DNA Research Institute KDRI Tabata S tabata@kazusa.or.jp 2000-12-10 DNA Research 7, 331-338 Environmental, Bioremediation 266835 18 000570_GCAT 373790 128788 637000159 NC_002678, NC_002679, NC_002682 Complete 7036 7361 1 2 62.7 Japan from Lotus corniculatus Lotus corniculatus Aerobe Rod-shaped Mesophile gram- Symbiotic Mutualistic Lotus corniculatus None Host Motile Nitrogen fixation Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium salinarum ARCHAEAL Halobacterium sp. 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ATCC 700970 ATCC 700970 Gc00038 Genome Complete and Published Public Eli Lilly, Perkin-Elmer, Univ of Alabama NIH-NIAID Glass JI Glass_John_I@Lilly.com UU 2000-10-12 Nature 407, 757-762 Animal Pathogen, Medical, Human Pathogen 273119 101 000572_GCAT 118778 48336 637000332 NC_002162 Complete 751 691 1 0 25.5 USA Homo sapiens Urogenital tract Facultative Sphere-shaped Mesophile gram+ Free living Singles Supperative arthritis, Sexually transmitted disease, Meningitis, Pneumonia, Septicemia Urogenital tract, Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa PAO1 PAO1 Pseudomonas aeruginosa PAO1 ATCC 15692 Gc00037 Genome Complete and Published Public Chiron Corp., Univ of Washington- Seattle Cystic Fibrosis Foundation Olson MV mvo@u.washington.edu PA 2000-09-30 Nature 406,959-964 Agricultural, Plant Pathogen, Medical, Human Pathogen 208964 331 000573_GCAT 154131 59263 637000218 NC_002516 Complete 6264 5742 1 0 66.6 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Nosocomial infection Fresh water, Soil, Wastewater, Host 25 - 30 Motile Polar flagella, Pathogen Heterotroph Archaea Euryarchaeota Thermoplasmata Thermoplasmatales Thermoplasmataceae Thermoplasma Thermoplasma acidophilum ARCHAEAL Thermoplasma acidophilum DSM 1728 DSM 1728 Thermoplasma acidophilum DSM 1728 DSM 1728 Yes Gc00036 Genome Complete and Published Public Medigenomix, Max Planck Institute Baumeister W baumeist@biochem.mpg.de Ta 2000-09-28 Nature 407, 508-513 Evolutionary, Biotechnological 273075 110 000574_GCAT 104667 47977 638154521 NC_002578 Complete 1564 1580 46 Germany Self-heating coal refuse pile in southwestern Indiana USA Self-heating coal refuse pile in southwestern Indiana Facultative Rod-shaped Nonsporulating Thermophile 0.5 - 4 gram- Free living None Solfataric field 45 - 63 Motile Acidophile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Buchnera Buchnera aphidicola BACTERIAL Buchnera aphidicola APS APS Buchnera aphidicola str. 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Craig Venter Institute NIH-NIAID Fraser CM http://www.tigr.org/~cmfraser/ 2000-03-15 NAR 28,1397-1406 Animal Pathogen, Medical, Human Pathogen 243161 229 000582_GCAT 302228 151827 637000062 AE002160, NC_002620 Complete 1072 963 1 1 40.3 International Normal mice, 1939 1939 Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Respiratory infection, Bronchitis, Pharyngitis, Pneumonia Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila pneumoniae BACTERIAL Chlamydophila pneumoniae AR39 AR39 Chlamydophila pneumoniae AR39 Gc00027 Genome Complete and Published Public Univ of Manitoba, J. Craig Venter Institute NIH-NIAID Fraser CM http://www.tigr.org/~cmfraser/ CP 2000-03-15 NAR 28,1397-1406 Medical, Human Pathogen 115711 247 000583_GCAT 112346 637000068 NC_002179, AE002161 Complete 1229 1197 1 0 40.6 International University of Washington student with acute respiratory tract infection in 1983 1983 USA University of Washington student with acute respiratory tract infection in 1983 Homo sapiens Patient with acute respiratory tract infection Airways Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Respiratory infection, Pneumonia, Pharyngitis, Multiple sclerosis, Heart disease, Bronchitis, Asthma Host 37 Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis BACTERIAL Neisseria meningitidis MC58 MC58 B Neisseria meningitidis MC58 ATCC BAA-335 Gc00026 Genome Complete and Published Public J. Craig Venter Institute Chiron Corp. 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Craig Venter Institute DOE Fraser CM http://www.tigr.org/~cmfraser/ DR 1999-11-19 Science 286,1571-1577 Environmental, Bioremediation 243230 65 000586_GCAT 681593 137205 637000092 AE000513, NC_001263, NC_001264, AE001825 Complete 3060 3304 2 2 66.6 USA Aerobe Coccus-shaped Mesophile gram- Free living None Soil 30 - 37 Nonmotile Radiation resistant Chemoorganotroph Bacteria Thermotogae Thermotogae (class) Thermotogales Thermotogaceae Thermotoga Thermotoga maritima BACTERIAL Thermotoga maritima MSB8 MSB8 Thermotoga maritima MSB8 ATCC 43589, DSM 3109 Yes Gc00023 Genome Complete and Published Public J. Craig Venter Institute DOE Fraser CM http://www.tigr.org/~cmfraser/ TM 1999-05-27 Nature 399,323-329 Biotechnological, Evolutionary, Energy production 243274 111 000587_GCAT 112852 149602 637000321 NC_000853 Complete 1860 1961 1 0 46.2 USA Geothermal marine area near Vulcano Italy Italy Geothermal marine area near Vulcano Italy Anaerobe Rod-shaped Nonsporulating Hyperthermophile gram- Free living None Marine 80 Motile Heterotroph Archaea Crenarchaeota Thermoprotei Desulfurococcales Desulfurococcaceae Aeropyrum Aeropyrum pernix ARCHAEAL Aeropyrum pernix K1 K1 Aeropyrum pernix K1 JCM 9820, ATCC 700893, DSM 11879 Yes Gc00022 Genome Complete and Published Public NITE NITE Kawarabayasi Y mailto:kawarabayasi.yutaka@aist.go.jp APE 1999-04-30 DNA Research 6,83-101 Biotechnological 272557 211 000588_GCAT 267839 638154501 NC_000854 Complete 1669 2820 1 0 56.3 Japan Coastal solfataric thermal vent at Kodakara-Jima Island in Japan in 1993 1993 Japan Coastal solfataric thermal vent at Kodakara-Jima Island in Japan in 1993 Aerobe Sphere-shaped Hyperthermophile 5 - 9 gram- Free living None Coastal, Marine, Hydrothermal vent 70 - 100 Motile Heterotroph, Chemolithoautotroph Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila pneumoniae BACTERIAL Chlamydophila pneumoniae CWL029 CWL029 Chlamydophila pneumoniae CWL029 Gc00021 Genome Complete and Published Public Stanford Univ, Univ of California, Berkeley Incyte Stephens RS ctgenome@socrates.berkeley.edu CPn 1999-04-10 Nat Genet 21,385-389 Medical, Human Pathogen 115713 248 000589_GCAT 200415 637000069 AE001363, NC_000922 Complete 1230 1137 1 0 40.6 USA Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Bronchitis, Respiratory infection, Pharyngitis, Heart disease, Pneumonia Host 37 Nonmotile Pathogen, Obligate intracellular Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori J99 J99 Helicobacter pylori J99 CCUG 47164, ATCC 700824 No Gc00020 Genome Complete and Published Public Astra, Genome Therapeutics Astra, Genome Therapeutics Alm RA richard.alm@arcb.us.astra.com jhp 1999-01-14 Nature 397,176-180 Medical, Human Pathogen 85963 234 000590_GCAT 582789 637000134 NC_000921, AE001439 Complete 1643 1546 1 0 38 USA Patient with duodenal ulcer in USA in 1994 1994 USA Patient with duodenal ulcer in USA in 1994 Homo sapiens Patient with duodenal ulcer Gastrointestinal tract Stomach Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Host, Human stomach 37 Motile Pathogen Eukaryota Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis EUKARYAL Caenorhabditis elegans Bristol N2 Caenorhabditis elegans Gc00019 Genome Complete and Published Public Sanger Institute, Washington Univ MRC, NIH-NHGRI WUSTL worm@watson.wustl.edu 1998-12-11 Science 282,2012-2018 Model organism 6239 13758 000591_GCAT 639507900 NC_003279-84 Complete 100272 23209 6 0 35 Sanger International Aerobe Mesophile Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia prowazekii BACTERIAL Rickettsia prowazekii Madrid E Madrid E Rickettsia prowazekii str. Madrid E Gc00018 Genome Complete and Published Public Univ of Uppsala NFR, SSF Kurland CG chuck@xray.bmc.uu.se RP 1998-11-12 Nature 396,133-140 Biothreat, Medical, Human Pathogen 272947 43 000592_GCAT 137270 637000245 NC_000963 Complete 1111 911 1 0 29 Sweden Typhus patient in Madrid Spain Typhus patient in Madrid 40.416741 -3.70325 Homo sapiens Patient with typhus Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Typhus, Rocky Mountain Spotted Fever Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis D/UW-3/CX (sv D) D/UW-3/CX (sv D) D Chlamydia trachomatis D/UW-3/CX Gc00017 Genome Complete and Published Public Stanford Univ, Univ of California, Berkeley NIH-NIAID Stephens RS ctgenome@socrates.berkeley.edu CT 1998-10-23 Science 282,754-759 Animal Pathogen, Medical, Human Pathogen 272561 45 000593_GCAT 146817 637000064 AE001273, NC_000117 Complete 1042 984 1 0 41.3 USA Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Respiratory infection, Pharyngitis, Trachoma, Venereal disease, Bronchitis, Heart disease, Pneumonia Host 37 Nonmotile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema Treponema pallidum BACTERIAL Treponema pallidum pallidum Nichols Nichols Treponema pallidum subsp. pallidum str. 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Craig Venter Institute NIH-NIAID Weinstock G gweinsto@watson.wustl.edu http://www.tigr.org/~cmfraser/ TP 1998-07-17 Science 281,375-388 Medical, Human Pathogen 243276 5 000594_GCAT 147951 637000328 NC_000919 Complete 55.7x 1138 1139 1 0 52.8 USA Neurosyphilitic patient in 1912 1912 Neurosyphilitic patient in 1912 Homo sapiens Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Syphilis Host Motile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis H37Rv (lab strain) H37Rv (lab strain) Mycobacterium tuberculosis H37Rv ATCC 25618 No Gc00015 Genome Complete and Published Public Sanger Institute Wellcome Trust Cole ST stcole@pasteur.fr Rv 1998-06-11 Nature 393,537-544 Animal Pathogen, Medical, Human Pathogen 83332 224 000595_GCAT 104411 49893 637000173 NC_000962 Complete 4411 4060 1 0 65.6 United Kingdom Human-lung H37 isolate in 1934 1934 Human-lung H37 isolate in 1934 Homo sapiens Airways Lung Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host 37 Nonmotile Pathogen Chemoorganotroph Archaea Euryarchaeota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus horikoshii ARCHAEAL Pyrococcus horikoshii OT3 OT3 Pyrococcus horikoshii OT3 NBRC 100139, DSM 12428, ATCC 700860, JCM 9974 Yes Gc00014 Genome Complete and Published Public Univ of Tokyo, NITE NITE Kawarabayasi Y kawarabayasi.yutaka@aist.go.jp P 1998-04-30 DNA Research 5,55-76 Biotechnological 70601 207 000596_GCAT 163167 762 638154516 NC_000961 Complete 1738 2366 1 0 41.9 Japan Hydrothermal vent at Okinawa Trough in the Pacific Ocean at a depth of 1395m Japan Hydrothermal vent at Okinawa Trough in the Pacific Ocean at a depth of 1395m 1395 meters Obligate anaerobe Coccus-shaped Nonsporulating Hyperthermophile 7 gram- Free living None Marine, Hydrothermal vent 80 - 102 Motile Sulfur respiration Bacteria Aquificae Aquificae (class) Aquificales Aquificaceae Aquifex Aquifex aeolicus BACTERIAL Aquifex aeolicus VF5 VF5 Aquifex aeolicus VF5 Gc00013 Genome Complete and Published Public Univ of Illinois at Urbana-Champaign, Diversa DOE, Diversa Swanson RV rswanson@diversa.com aq 1998-03-26 Nature 392,353-358 Biotechnological 224324 215 000597_GCAT 153906 637000010 AE000657, NC_000918 Complete 1551 1663 1 1 43.5 USA Facultative Hyperthermophile gram- Free living None Marine, Hot spring 96 Nonmotile Chemolithoautotroph Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi B31 B31 Borrelia burgdorferi B31 ATCC 35210 Yes Gc00012 Genome Complete and Published Public Brookhaven Natl Lab, J. Craig Venter Institute NIH Fraser CM http://www.tigr.org/~cmfraser/ BB 1997-12-11 Nature 390,580-586 Medical, Human Pathogen 224326 3 000598_GCAT 267491 4156 637000036 NC_001318, AE000783 Complete 910 1726 1 21 28.6 USA Dilutional cloning from the original Lyme-disease tick isolate Dilutional cloning from the original Lyme-disease tick isolate Aerobe Spiral-shaped Mesophile gram- Free living Lyme disease Host Motile Pathogen Archaea Euryarchaeota Archaeoglobi Archaeoglobales Archaeoglobaceae Archaeoglobus Archaeoglobus fulgidus ARCHAEAL Archaeoglobus fulgidus VC-16 VC-16 Archaeoglobus fulgidus DSM 4304 DSM 4304, ATCC 49558 Yes Gc00011 Genome Complete and Published Public Univ of Illinois at Urbana-Champaign, J. Craig Venter Institute DOE TIGR gaf@tigr.org 1997-11-27 Nature 390,364-370 Biotechnological 224325 104 000599_GCAT 158735 755 638154502 NC_000917 Complete 2178 2519 1 0 48.6 USA Geothermally heated sea floor at Vulcano Island Italy Italy Geothermally heated sea floor at Vulcano Island Italy Obligate anaerobe Hyperthermophile gram- Free living None Marine 60 - 95 Motile Sulfate reducer, Potential Pathogen, Piezophile Chemolithoautotroph Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus subtilis BACTERIAL Bacillus subtilis subtilis 168 168 Bacillus subtilis subsp. subtilis str. 168 JCM 1465, NCIB 3610, CCM 2216, IAM 12118, LMG 7135, ATCC 6051, NCTC 3610, IFO 13719, NBRC 13719 Yes Gc00010 Genome Complete and Published Public Japanese Consortium, European Consortium EC Kunst F fkunst@pasteur.fr BSU 1997-11-20 Nature 390,249-256 Biotechnological 224308 76 000600_GCAT 103309 128995 637000022 NC_000964, AL009126 Complete 4214 4408 1 0 43.5 International X-ray irradiated strain in Marburg in 1947 1947 X-ray irradiated strain in Marburg in 1947 50.814788 8.769239 Facultative Rod-shaped Sporulating Mesophile gram+ Free living None Soil 25 - 35 Motile Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanothermobacter Methanothermobacter thermautotrophicus ARCHAEAL Methanothermobacter thermoautotrophicus Delta H Delta H Methanothermobacter thermautotrophicus str. Delta H Gc00009 Genome Complete and Published Public Genome Therapeutics, Ohio State Univ DOE Smith DR doug.smith@genomecorp.com MTH 1997-11-10 J.Bacteriology 179,7135-7155 Energy production, Biotechnological 187420 289 000601_GCAT 157113 45830 638154510 NC_000916 Complete 36935 8.6x 1751 1894 1 0 49.5 Sanger USA Sewage sludge in 1971 in Urbana Illinois 1971 USA Sewage sludge in 1971 in Urbana Illinois 40.106649 -88.195627 Obligate anaerobe Nonsporulating Thermophile gram- Free living None Sludge 65 - 70 Nonmotile Methanogen Lithotroph, Lithoautotroph, Autotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K-12, MG1655 K-12, MG1655 Escherichia coli str. K-12 substr. MG1655 ATCC 700926 Gc00008 Genome Complete and Published Public Univ of Wisconsin NIH-NHGRI Blattner FR http://www.genetics.wisc.edu/research/blattner/blattner_f.html b 1997-09-05 Science 277,1453-1474 Medical 511145 225 000602_GCAT 113559 24909 637000106 NC_000913, U00096 Complete 4639 4612 1 0 50.8 USA Patient in 1922 1992 Patient in 1922 Homo sapiens Patient Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora 37 Motile Non-Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori 26695 26695 Helicobacter pylori 26695 ATCC 700392 Gc00007 Genome Complete and Published Public J. Craig Venter Institute NIH Tomb JF ghp@tigr.org HP 1997-08-07 Nature 388,539-547 Medical, Human Pathogen 85962 233 000603_GCAT 579300 200945 637000132 AE000511, NC_000915 Complete 1667 1666 1 0 38.9 USA Patient in the United Kingdom who had gastritis before 1987 1987 UK Patient in the United Kingdom who had gastritis before 1987 Homo sapiens Patient with gastritis Gastrointestinal tract Stomach Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Ulcer, Gastric inflammation Host, Human stomach 37 Motile Pathogen Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae S288C S288C Saccharomyces cerevisiae S288c S288C, ATCC 26108 Gc00006 Genome Complete and Published Public International Collaboration NHGRI, Wellcome Trust, RIKEN, EC 1997-05-29 Nature 387,5-105 Model organism 4932 13838 000604_GCAT 317495 638208609 NC_001133-48 Complete 12069 5860 16 0 38.1 Sanger International Mesophile Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma pneumoniae BACTERIAL Mycoplasma pneumoniae M129 M129 Mycoplasma pneumoniae M129 ATCC 29342 Gc00005 Genome Complete and Published Public Univ of Heidelberg DFG Herrmann R r.herrmann@mail.zmbh.uni-heidelberg.de M 1996-11-15 NAR 24,4420-4449 Medical, Human Pathogen 272634 99 000605_GCAT 106752 108728 637000183 NC_000912 Complete 816 736 1 0 40 Germany Patient with atypical pneumonia Patient with atypical pneumonia Homo sapiens Patient with atypical pneumonia Airways Facultative Sphere-shaped Nonsporulating Mesophile gram+ Free living Singles Respiratory infection, Tracheobronchitis, Pneumonia Host 37 Motile Pathogen Archaea Euryarchaeota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus jannaschii ARCHAEAL Methanocaldococcus jannaschii DSM 2661 DSM 2661 Methanocaldococcus jannaschii DSM 2661 ATCC 43067, DSM 2661 Yes Gc00004 Genome Complete and Published Public Univ of Illinois at Urbana-Champaign, J. Craig Venter Institute DOE, NASA, HGS Venter CJ MJ 1996-09-28 Science 273,1058-1073 Energy production, Biotechnological 243232 102 000606_GCAT 112081 142640 638154505 NC_000909, NC_001733, NC_001732 Complete 1664 1878 1 2 31.4 USA Deep-sea hydrothermal vent in 1982 1982 Deep-sea hydrothermal vent in 1982 Obligate anaerobe Coccus-shaped Nonsporulating Hyperthermophile 5.2 - 7 gram- Free living None Marine, Hydrothermal vent 85 Motile Piezophile, Methanogen Lithotroph Bacteria Cyanobacteria Chroococcales Synechocystis BACTERIAL Synechocystis sp. PCC6803 PCC6803 Synechocystis sp. PCC 6803 ATCC 27184, PCC6803 Gc00003 Genome Complete and Published Public Kazusa DNA Research Institute KDRI Tabata S tabata@kazusa.or.jp 1996-06-30 DNA Res 3,109-136 Biotechnological, Ocean carbon cycle, Environmental 1148 60 000607_GCAT 123875 137040 637000315 NC_000911 Complete 3573 3632 1 4 47.7 Japan Freshwater lake in 1968 1968 Freshwater lake in 1968 Facultative Coccus-shaped Mesophile gram- Free living None Fresh water, Fresh water Motile Photosynthetic, Photoautotroph Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma genitalium BACTERIAL Mycoplasma genitalium G-37 G-37 Mycoplasma genitalium G37 ATCC 33530 Yes Gc00002 Genome Complete and Published Public J. Craig Venter Institute DOE, NIH, HGS Fraser CM http://www.tigr.org/~cmfraser/ MG 1995-10-20 Science 270,397-403 Animal Pathogen, Medical, Human Pathogen 243273 97 000608_GCAT 267448 149052 637000176 NC_000908 Complete 580 564 1 0 31.7 USA Urethral specimen from a male patient with nongonococcal urethritis Urethral specimen from a male patient with nongonococcal urethritis Homo sapiens Male Patient with nongonococcal urethritis Urogenital tract Urethra Facultative Sphere-shaped Nonsporulating Mesophile gram+ Free living Singles Non-gonococcal urethritis, Urogenital infection, Respiratory infection Urogenital tract, Host 37 Motile Pathogen, Parasite Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae Rd (KW20) Rd (KW20) Haemophilus influenzae Rd KW20 ATCC 51907 No Gc00001 Genome Complete and Published Public J. Craig Venter Institute ACS, HGS Venter CJ HI 1995-07-28 Science 269,496-512 Medical, Human Pathogen 71421 219 000609_GCAT 136115 149603 637000126 NC_000907, L42023 Complete 1830 1774 1 0 38.1 USA 1890s during an influenza pandemic by Pfeiffer 1980's 1890s during an influenza pandemic by Pfeiffer Homo sapiens Airways Facultative Rod-shaped Mesophile gram- Free living Bronchitis, Sinusitis, Septicemia, Otitis, Meningitis Nasopharyngeal microflora, Host 35 - 37 Nonmotile Pathogen Bacteria Tenericutes Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma laidlawii BACTERIAL Acholeplasma laidlawii PG-8A PG-8A Acholeplasma laidlawii PG-8A Gc00734 Gi01961 Genome Complete and Published Public RIPCM Govorun VM govorun@hotmail.ru ACL 2007-12-12 Unpublished Biotechnological 441768 19259 002588_GCAT 240846 641522601 NC_010163 Complete 1496 1426 1 0 31 Russia Facultative Coccus-shaped Mesophile gram- Free living None Host, Soil, Wastewater 37 Nonmotile Bacteria Acidobacteria BACTERIAL Acidobacteria sp F11 F11 Gi01673 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Environmental, Bioremediation 171953 000612_GCAT 334657 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Soil, Fresh water Nonmotile Acidophile Heterotroph, Chemoorganotroph Bacteria Acidobacteria BACTERIAL Acidobacteria sp B6 B6 Gi01674 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Environmental, Bioremediation 171953 000613_GCAT 334657 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Soil, Fresh water Nonmotile Acidophile Heterotroph, Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus ferrooxidans BACTERIAL Acidithiobacillus ferrooxidans ATCC 23270 ATCC 23270 Acidithiobacillus ferrooxidans ATCC 23270 DSM 14882, ATCC 23270, NCIB 8455 Yes Gc00911 Gi00003 Genome Complete and Published Public J. Craig Venter Institute DOE Tettelin HS http://www.tigr.org/~tettelin/ 2008-12-19 Unpublished Bioleaching, Environmental, Bioremediation 243159 53 000614_GCAT 643348501 NC_011761 Complete 2900 3147 1 0 56 USA Acid, bituminous coal mine effluent Obligate anaerobe Rod-shaped Nonsporulating Mesophile 2 gram- Free living None Acid mine drainage Motile Iron oxidizer, Acidophile Obligate chemoautolithotroph Bacteria Proteobacteria Gammaproteobacteria Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus ferrooxidans BACTERIAL Acidithiobacillus ferrooxidans ATCC 23270 ATCC 23270 Gi00002 Genome incomplete Proprietary Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Bioleaching, Environmental, Bioremediation 243159 000615_GCAT 0 2611 2711 56 USA Obligate anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Acid mine drainage Motile Iron oxidizer, Acidophile Obligate chemoautolithotroph Bacteria Acidobacteria Acidobacteria (class) Acidobacteriales Acidobacteriaceae Acidobacterium Acidobacterium capsulatum BACTERIAL Acidobacterium capsulatum ATCC 51196 ATCC 51196 Acidobacterium capsulatum ATCC 51196 ATCC 51196 Yes Gc00956 Gi00004 Genome Complete and Published Public Los Alamos National Laboratory, J. Craig Venter Institute NSF Kuske CR Kuske@lanl.gov ACP 2009-03-30 Appl Environ Microbiol. 75, 2046-2056 Bioremediation, Environmental, Biotechnological 240015 28085 000616_GCAT 643692001 NC_012483 Complete 1.8-2.8Kb, 6.5-11Kb 49530 Celera assembler 10x Glimmer 4127 3492 1 0 60.5 USA Acidic mine drainage in Yanahara mine Okayama Japan Japan Yanahara mine Okayama Japan 34.93171 134.082527 Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Acid mine drainage, Soil, Fresh water 30 Nonmotile Acidophile Heterotroph, Chemoorganotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax temperans BACTERIAL Acidovorax temperans CB2 CB2 Gi01474 Genome incomplete Public Univ of Auckland, NZ Biotechnological 665025 39849 000618_GCAT 7056 0 0 0 0 New Zealand Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Motile unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial communities from Nova Scotia coast surface waters from Nova Scotia coast surface waters Gm00020 Metagenome incomplete Public J. Craig Venter Institute NSF Heidelberg J http://www.tigr.org/faculty/Heidelberg_John/index.shtml 000619_GCAT 0 0 0 0 USA None Marine unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Air microbial communities from New York from New York Gm00021 Metagenome incomplete Public J. Craig Venter Institute Alfred P. Sloan Foundation 000620_GCAT 0 0 0 0 USA unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial communities from planktonic and surface waters from planktonic and surface waters Gm00101 Metagenome incomplete Public Australian Genome Alliance, J. Craig Venter Institute Australian Research Council, J. Craig Venter Institute 002967_GCAT 0 1600000 0 0 USA Marine unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Freshwater microbial communities from Antarctic Lake from Antarctic Lake Gm00102 Metagenome incomplete Public Australian Genome Alliance, J. Craig Venter Institute DOE, J. Craig Venter Institute 002968_GCAT 0 500000 0 0 USA unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil microbial communities from contaminated sediments from contaminated sediments Gm00103 Metagenome incomplete Public Univ Federal de Santa Catarina CNPq 002969_GCAT 0 0 0 0 Brazil Gasoline and/or ethanol contaminated soil in Brazil Gasoline and/or ethanol contaminated soil in Brazil unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial communities from English Channel site L4 from English Channel site L4 seasonal and inter-annual variability Gm00104 Metagenome incomplete Public Centre for Ecology & Hydrology, Plymouth Marine Laboratory NERC 002970_GCAT 0 0 0 0 United Kingdom English Channel site L4 (50.25 N, 4.216 W) and on the Atlantic Meridional Transect (AMT) United Kingdom English Channel site L4 (50.25 N, 4.216 W) and on the Atlantic Meridional Transect (AMT) 50.25 -4.216 Marine unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine viral communities Gm00105 Metagenome incomplete Public Centre for Ecology & Hydrology, Plymouth Marine Laboratory NERC 002971_GCAT 0 0 0 0 United Kingdom Marine unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine and Freshwater ammonia oxidizing bacterial (AOB) communities under pertubations in Carbon Dioxide Ammonia Oxidizing Bacteria (AOB) Gm00106 Metagenome incomplete Public Centre for Ecology & Hydrology, Univ of Warwick, Univ of Newcastle, Univ of Aberdeen NERC 002972_GCAT 0 0 0 0 United Kingdom Marine and freshwater environments Marine and freshwater environments unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil microbial communities from marine sediment from marine sediment Gm00107 Metagenome incomplete Public Centre for Ecology & Hydrology, Cardiff Univ NERC 002973_GCAT 0 0 0 0 United Kingdom unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine cyanobacterial communities from coastal water from coastal water Gm00117 Metagenome incomplete Public UCSD NSF Palenik B bpalenik@ucsd.edu 003078_GCAT 0 0 0 0 USA Coastal waters Coastal waters None Marine, Coastal unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil microbial communities from the marine Colne Estuary sediments from the marine Colne Estuary sediments Gm00108 Metagenome incomplete Public Univ of Essex, Centre for Ecology & Hydrology, Univ of Sheffield NERC 002974_GCAT 0 0 0 0 United Kingdom Estuarine sediments in the Colne estuary United Kingdom Estuarine sediments in the Colne estuary 51.4857 0.5736 Sediment unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil Fungal communities from boreal forest from boreal forest Gm00109 Metagenome incomplete Public Univ of Alaska Fairbanks NSF Taylor L http://mercury.bio.uaf.edu/%7Elee_taylor/ 002975_GCAT 0 0 0 0 USA Boreal forest soil Boreal forest soil Soil unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil microbial communities from four geographic locations from four geographic locations Soil Metagenome from Four Geographic Locations Gm00123 Metagenome complete Public Univ of Florida Triplett EW ewt@ufl.edu 2007-07-12 ISME J 1, 283-90 18561 003101_GCAT 0 Complete 0 0 0 454 USA Soils collected from different sites within the Western Hemisphere (Brazil, Canada, Florida, and Illinois) Soils collected from different sites within the Western Hemisphere (Brazil, Canada, Florida, and Illinois) Soil unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Daphnia pulex microbiome Gm00110 Metagenome incomplete Public Daphnia Genomics Consortium Ebert D dieter.ebert@unibas.ch 002976_GCAT 0 0 0 0 International Daphnia pulex None unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil PCBs-degrading microbial communities Gm00111 Metagenome incomplete Public Michigan State Univ Woo JS sulwoo@msu.edu Environmental 002977_GCAT 0 0 0 0 USA None Soil PCB degrading unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial communities from deep sea hydrothermal vents from deep sea hydrothermal vents Gm00112 Metagenome incomplete Public IFM-GEOMAR, Max Planck Institute Meyerdierks A http://www.mpi-bremen.de/en/Anke_Meyerdierks.html Environmental 002978_GCAT 0 0 0 0 Germany Deep sea hydrothermal vents Deep sea hydrothermal vents None Hydrothermal vent, Marine Chemosynthetic unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fecal microbiome of Human of Human healthy adults Healthy Human Gut Metagenome Gm00022 Metagenome incomplete Public INRA, Genoscope Samain S samain@genoscope.cns.fr Medical 000621_GCAT 0 Genbank Complete 0 0 0 France Healthy human gut Healthy human gut Homo sapiens adult Healthy Gastrointestinal tract Feces Homo sapiens None Human fecal, Host unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fecal microbiome of Human of Human with Crohn's Disease Gut Metagenome from Patient with Crohn's Disease Gm00039 Metagenome incomplete Public INRA, Genoscope Samain S samain@genoscope.cns.fr Medical 20193 001298_GCAT 0 Genbank In progress 0 0 0 France Fecal sample from patients with Crohn's disease Fecal sample from patients with Crohn's disease Homo sapiens Patient with Crohn's Disease Gastrointestinal tract Feces Homo sapiens None Human fecal, Host unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Sand microbial communities from Pacific Beach from Pacific Beach Pacific Beach Sand Metagenome Gm00026 Metagenome incomplete Public BCM-HGSC Highlander, SK sarahh@bcm.tmc.edu Environmental 412757 13729 000622_GCAT 0 Traces In progress 3107 2571 61 USA Pacific Beach in San Diego California USA Pacific Beach in San Diego California 32.719835 -117.173696 None Sea sand unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Alvinella pompejana epibiont microbiome from the East Pacific Rise hydrothermal vent from the East Pacific Rise hydrothermal vent Alvinella pompejana epibiont metagenome Gm00023 Metagenome complete Public Symbio Corp, Univ of Delaware NSF Cary C Caryc@udel.edu 2008-11-12 PNAS 105, 17516-21 408171 17241 17241 000623_GCAT 0 AAUQ01000000 Complete 270000 FgenesB 26000 0 0 0 USA Black smoker chimneys on East Pacific Rise (9deg 50.4', 104deg 17.4' W) at a depth of 2500m 9deg 50.4', 104deg 17.4' W 9.8344 -104.2844 2500 meters Anaerobe Alvinella pompejana None Host, Hydrothermal vent, Deep sea 20 - 80 Symbiont unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Acidic water microbial communities from Richmond acid mine drainage from Richmond acid mine drainage Acid Mine Drainage Biofilm Metagenome Gm00001 Metagenome complete Public DOE Joint Genome Institute, Univ of California, Berkeley DOE, NSF Banfield JF jill@eps.berkeley.edu 2004-03-04 Nature 428, 37-43 Environmental, Biotechnological 20823 000624_GCAT 2001200000 AADL00000000, AAWO00000000 Complete 10830 12559 0 USA Richmond mine at Iron Mountain California 2005 USA Iron Mountain California 40.678099 -122.515068 0.83-1.28 None High metal concentration, Biofilm, Acid mine 38-42 Pink biofilm, Metal tolerance, Acidic unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial communities from Sargasso Sea from Sargasso Sea Sargasso Sea Gm00002 Metagenome complete Public J. Craig Venter Institute Moore Foundation Venter JC jcventer@tcag.org 2004-04-02 Science 304, 66-74 Marine Microbial Initiative (MMI), Environmental 000625_GCAT 0 Complete 1600000 0 0 USA Bermuda Atlantic Time-series Study site (BATS) Bermuda Atlantic Time-series Study site (BATS) 31.67 -64.17 None Surface water, Marine Saline unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial communities from Global Ocean Sampling (GOS) from Global Ocean Sampling (GOS) Global Ocean Sampling (GOS) Expedition overview Gm00080 Metagenome complete Public J. Craig Venter Institute Moore Foundation Venter JC jcventer@tcag.org 2007-04-08 PLoS Biology 5, e77 Marine Microbial Initiative (MMI), Environmental 408172 19733 002675_GCAT 0 AACY000000000 Complete 0 6123395 0 USA None Marine, Surface water Saline unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil microbial communities from Minnesota Farm from Minnesota Farm Waseca County Farm Soil Metagenome Gm00003 Metagenome complete Public DOE Joint Genome Institute DOE Rubin EM emrubin@lbl.gov 2005-04-22 Science 308, 554-7 Environmental, Agricultural 13699 000626_GCAT 2001200001 AAFX01000000 Complete Conductivity: 0.79 Ece, Nitrate: 69ppm, Sulphates: 19.7 ppm pBK-CMV Phrap Fgenesb 744 100000 0 0 Sanger USA Surface soil (0-10 cm) from a farm in Waseca County Minnesota in 2001 05-SEP-2001, 12.00pm USA Waseca County, Minnesota 44.152652 -93.519745 6-7 None Soil unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fossil microbial community from Whale Fall from Whale Fall at Santa Cruz Basin of the Pacific Ocean Whale Fall Metagenome Gm00004 Metagenome complete Public DOE Joint Genome Institute DOE Rubin EM emrubin@lbl.gov 2005-04-22 Science 308, 554-7 Environmental 13700 13700 000627_GCAT 0 AAFZ00000000, AAFY01000000, AAGA00000000 Complete 94937 122145 0 USA Rib bone of a gray whale carcass at 1674 meters depth in the Santa Cruz Basin of the Pacific Ocean USA Pacific Ocean, Santa Cruz Basin, USA (N33.30 W119.22) 33.30 119.22 1674 meters Halophile None Biofilm, Marine, Seafloor Barophile unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Simulated microbial communities from 113 complete and draft JGI genomes from 113 complete and draft JGI genomes Gm00114 Metagenome complete Public DOE Joint Genome Institute DOE Mavrommatis K http://bugmaster.jgi-psf.org/people/kmavromm/GenomeBiology/Content/Mavrommatis.htm 2007-06-01 Nature Methods 4, 495-500 003000_GCAT 0 Complete 262860 352230 0 USA None fossil metagenome MICROBIAL Fossil microbiome from Pleistocene Cave Bears from Pleistocene Cave Bears Ursus spelaeus Metagenome Gm00024 Metagenome complete Public DOE Joint Genome Institute, Max Planck Institute DOE Rubin EM emrubin@lbl.gov 2005-07-22 Science 309, 597-9 444079 19671 000628_GCAT 0 Complete 1000 0 0 454 USA cave bear (Ursus spelaeus) fossil cave bear (Ursus spelaeus) fossil unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Sediment microbial communities from DOE Hanford Site from DOE Hanford Site with nuclear contamination Gm00025 Metagenome incomplete Public DOE Joint Genome Institute DOE Brockman F http://www.sysbio.org/resources/staff/brockman.stm 000629_GCAT 0 Complete 0 13388 0 USA Contaminated sediments beneath a leaking high-level radioactive waste tank at the DOE Hanford Site USA Benton County, Washington 46.3000 -119.3000 Sediment unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Freshwater microbial communities from South Africa Goldmine from South Africa Goldmine South Africa Goldmine Gm00027 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov 000630_GCAT 0 0 0 62 USA 8,000 ft below the surface from a South African gold mine in the Witwatersrand Basin 8,000 ft below the surface from a South African gold mine in the Witwatersrand Basin None Fresh water, Groundwater soil metagenome MICROBIAL Soil microbial communities from Wetland from Wetland Wetland Soil Bacterial Community Gm00082 Metagenome incomplete Public Duke Univ 410658 18833 002677_GCAT 0 16S 0 0 62 USA Freshwater wetland soils, including from the Florida Everglades, and North Carolina pocosin bogs, and riverine and non-riverine swamps Freshwater wetland soils, including from the Florida Everglades, and North Carolina pocosin bogs, and riverine and non-riverine swamps Soil MICROBIAL Marine microbial communities from coral reefs of the Northern Line Islands from coral reefs of the Northern Line Islands Marine Metagenome from Line Islands Gm00083 Metagenome Complete and Published Public SDSU, 454 Life Sciences Dinsdale E Elizabeth_dinsdale@hotmail.com 2008-02-27 PLoS ONE 3, e1584 408172 28667 002678_GCAT 0 Complete 0 0 62 454 USA Microbial and viral communities from water below the boundary layer of multiple atolls within the Northern Line Islands August 4 to September 6, 2005 USA Microbial and viral communities from water below the boundary layer of multiple atolls within the Northern Line Islands unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial community from San Diego solar salterns from San Diego solar salterns Gm00084 Metagenome incomplete Public SDSU Rodriguez Brito B brodrigu@rohan.sdsu.edu 002679_GCAT 0 0 0 0 USA Halophile Marine, Solar saltern stromatolite metagenome MICROBIAL Stromatolites microbial communities Stromatolite Metagenome Gm00085 Metagenome complete Public SDSU Desnues C cdesnues@yahoo.fr 2008-03-20 Nature 452, 340-3 496921 28843 002680_GCAT 0 Complete 0 0 0 USA Microbial and viral communities from stromatolites Mexico and Bahamas unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Freshwater microbial communities from Tilapia ponds from Tilapia ponds Gm00086 Metagenome incomplete Public SDSU Li L linlinli99013@gmail.com 002681_GCAT 0 0 0 0 USA coral metagenome MICROBIAL Coral holobiont Metagenomes from Porites compressa Following Stress Gm00087 Metagenome Complete and Published Public SDSU Wegley L lwegley@gmail.com 2007-11-01 Environ Microbiol 9, 2707-19 Environmental 496922 28595 002682_GCAT 0 Complete 0 0 0 454 USA Viral and microbial metagenomes from Porites compressa during the following stressor experiments: temperature, dissolved organic carbon, reduced pH, and nutrients. Viral and microbial metagenomes from Porites compressa during the following stressor experiments: temperature, dissolved organic carbon, reduced pH, and nutrients. Porites species Marine Symbiont unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Mosquitos viriome Mosquito Metagenome Gm00088 Metagenome Complete and Published Public SDSU, Genome Institute of Singapore Dinsdale EA elizabeth_dinsdale@hotmail.com 2008-03-12 Nature Epub 496923 28723 002683_GCAT 0 Complete 0 0 0 454 USA mixed species mosquitos collected in California USA California Mosquito Symbiont unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Lung viriome of Human of Human Viral metagenome from human lung overview Gm00090 Metagenome Complete and Published Public SDSU Furlan M mikefurlan@gmail.com 2008-03-12 Nature Epub Medical 433733 28593 002685_GCAT 0 Complete 0 0 0 454 USA Healthy patients and patients with cystic fibrosis Healthy patients and patients with cystic fibrosis Homo sapiens Airways Lung Host, Lung, Human airways unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Endophytic Frankia community of Plant roots of Plant roots Gm00091 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov 002686_GCAT 0 0 0 0 USA Coriaria arborea Nitrogen fixation, Symbiont unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine anaerobic ammonium oxidizing (anammox) community Marine anaerobic ammonium oxidizing (anammox) Gm00092 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov 002754_GCAT 2004170000 0 0 0 USA Anaerobe None Marine, Deep sea Ammonia-oxidizer unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Biogas-producing microbial community from Bioreactor from Bioreactor Gm00093 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov Biotechnological 002755_GCAT 0 0 0 0 USA Anaerobe None unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Wastewater treatment systems Type I Accumulibacter community From enhanced biological phosphorus removal bioreactor in Madison, WI, USA From enhanced biological phosphorus removal bioreactor in Madison, WI, USA Gm00094 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov 002756_GCAT 0 short-insert, fosmid, 454-titanium standard and paired-end 1374496 Newbler 0 0 0 USA Biphasic 2L bioreactor fed with synthetic wastewater Activated sludge mixed liquor from Nine Springs Wastewater Treatment Plant, Madison WI Dec 21, 2007 USA Enhanced biological phosphorus removal (EBPR) wastewater treatment bioreactor in Madison, WI, USA 43.078418 -89.386482 elevation: 263m Aerobe 1 atm Mesophile 7.0-7.5 Clusters Fresh water, Sediment, Sludge, Wastewater treatment plant Acetate oxidizer Polyphosphate-accumulating, Phosphate removal, EBPR unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Hot spring microbial communities from Yellowstone National Park from Yellowstone National Park Gm00095 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov Energy production, Bioenergy, Biohydrogen, Biotechnological 002757_GCAT 0 0 0 0 USA Extreme microbial habitats from 20 different sites at Yellowstone National Park (YNP) USA Extreme microbial habitats from 20 different sites at Yellowstone National Park (YNP) 44.376262 -110.690383 Thermophile None Hydrogen oxidizer unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Air microbial communities Singapore Singapore indoor air filters Singapore Air Metagenome Gm00096 Metagenome complete Public Genome Institute of Singapore, DOE Joint Genome Institute DOE Ruan Y ruanyj@gis.a-star.edu.sg http://www.gis.a-star.edu.sg/internet/site/investigators.php?user_id=19&f=cv 2008-04-02 PLoS ONE 3, e1862 Biodefense 655179 38673 002934_GCAT 0 Complete shotgun library fgenesb 80000 0 0 Sanger, WGS USA Filters from air handling units March and April of 2005 Singapore Singapore, Asia 1.35 103.82 Aerobe 1 atm Mesophile 7 None Air unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Sediment methylotrophic communities from Lake Washington from Lake Washington Freshwater Metagenome from Lake Washington Gm00097 Metagenome complete Public DOE Joint Genome Institute DOE Chistoserdova L milachis@u.washington.edu 2008-08-17 Nat Biotechnology 26, 1029-34 30541 002935_GCAT 0 Complete Phrap 0 0 0 Sanger USA Stable Isotope Probing with C1 compounds 15-MAY-05 USA Lake Washington, Seattle 47.676484 -122.228394 63 meters None Lake, Fresh water, Sediment unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Hot spring microbial communities from Yellowstone Bison Hot Spring Pool from Yellowstone Bison Hot Spring Pool thermal gradient Bison Pool thermal gradient Metagenome isolated from Yellowstone Bison Hot Spring Gm00098 Metagenome incomplete Public DOE Joint Genome Institute DOE Shock E eshock@asu.edu 36675 002936_GCAT 0 In progress short-insert lucy / pga 0 0 0 Dideoxysequencing USA Lower Geyser Basin in Yellowstone National Park USA Bison Pool / Rosette Geyser, Yellowstone National Park 44.5696298 -110.8651817 Thermophile None Fresh water 70 - 80 unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil microbial communities associated with greenhouse gases associated with greenhouse gases Gm00121 Metagenome incomplete Public Michigan State Univ, Kellogg Biological Station NSF 003098_GCAT 0 0 0 0 USA None Soil unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine viral communities from deep-sea hydrothermal vents from deep-sea hydrothermal vents Gm00120 Metagenome incomplete Public Univ of Delaware NSF Wommack K wommack@dbi.udel.edu 003097_GCAT 0 0 0 0 USA Thermophile None Marine, Hot spring unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Hot spring microbial communities from Yellowstone Bath Hot Springs from Yellowstone Bath Hot Springs Bath Hot Springs filamentous community Gm00118 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov 003082_GCAT 0 In progress 30941 44668 0 USA Thermophile None Hot spring, Fresh water unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Oral TM7 microbial communities of Human of Human healthy adults Single-cell genetic analysis of rare and uncultivated TM7 microbes Gm00119 Metagenome complete Public Stanford Univ, DOE Joint Genome Institute DOE Quake S http://med.stanford.edu/profiles/frdActionServlet?choiceId=printerprofile&fid=6281 2007-06-08 PNAS 104, 11889-94 Medical 003096_GCAT 0 NZ_ABBV00000000, NZ_ABBW00000000, NZ_ABBX00000000 Complete 3450 4078 0 USA Single cell amplification from Human subgingival crevice Single cell amplification from Human subgingival crevice Homo sapiens Oral None Human oral microflora, Host unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Saline water microbial communities Guerrero Negro, Baja California Sur, Mexico Guerrero Negro, Baja California Sur, Mexico hypersaline mats Guerrero Negro Hypersaline Microbial Mat Metagenome Gm00009 Metagenome complete Public DOE Joint Genome Institute DOE Hugenholtz P PHugenholtz@lbl.gov 2008-06-03 Mol Syst Biol. 4, 198 Environmental, Evolutionary, Ecological 527640 29795 001330_GCAT 0 Complete fgenesb 0 0 0 Sanger USA Stratified, hypersaline microbial mat from Guerrero Negro Negro, Baja California Sur, Mexico 13 Feb 2005, at about 2pm Mexico Pond 4 near 5 at Exportadora de Sal saltworks, Guerrero Negro, Baja California Sur, Mexico 27.68908 -113.9170 ~ 1m below water level Mesophile Halophile 6 to 9 None Mat, Hypersaline mats unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fecal microbiome of Human of Human healthy infants and adults Metagenome collected from infant and adult human fecal samples Gm00116 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov 408170 20077 003004_GCAT 0 0 0 0 GSS USA Homo sapiens Infants and adults Healthy Gastrointestinal tract Feces Homo sapiens None Human fecal, Host unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Endophytic microbial communities of pepper bark tree of pepper bark tree Microbial endophytes from the pepper bark tree Gm00115 Metagenome incomplete Public Univ of Vienna Mitter B birgit.reiter@arcs.ac.at Medical, Agricultural 003003_GCAT 0 0 0 0 Austria Warburgia ugandensis None unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine phototrophic picoeukaryotic community Gm00099 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov 002937_GCAT 0 0 0 0 USA None Marine unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fecal microbiome of Human of Human healthy Japanese infants and adults 13 Healthy Human Gut Metagenomes overview Gm00100 Metagenome complete Public Univ of Tokyo Hattori M hattori@k.u-tokyo.ac.jp http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage 2007-12-05 DNA Research 14, 169-81 Medical 408170 28117 002938_GCAT 0 Genbank Complete 727000 0 0 Japan fecal samples from 13 healthy individuals of various ages, including unweaned infants fecal samples from 13 healthy individuals of various ages, including unweaned infants Homo sapiens infants and adults Asian - Japanese Gastrointestinal tract Feces Homo sapiens None Human intestinal microflora, Host unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil Beggiatoa community from marine coastal sediments from marine coastal sediments Gm00034 Metagenome incomplete Public Max Planck Institute, Allegheny-Singer Research Institute Mussmann M mmussman@mpi-bremen.de Biotechnological 002690_GCAT 0 0 0 0 Germany Filament-shaped None Coastal, Marine, Sediment Sulphide oxidizer unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fossil microbiome from Mammuthus primigenius from Mammuthus primigenius Woolly mammoth Gm00028 Metagenome complete Public Penn State Univ, CCGB, McMaster Univ DOE Poinar, HN poinarh@mcmaster.ca 2006-01-20 Science 311, 392-4 444079 16317 000631_GCAT 0 Traces Complete 28000 0 0 USA Fossil remains from Lake Taimyr in Siberia Russia Fossil remains from Lake Taimyr in Siberia 74.5 102.5 unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fossil microbiome from Mammuthus primigenius from Mammuthus primigenius Woolly mammoth Gm00122 Metagenome complete Public Max Planck Institute Paabo S paaboeva.mpg.de http://email.eva.mpg.de/~paabo/ 2006-09-12 PNAS 103, 13578-84 444079 17621 003100_GCAT 0 CAAM00000000 Complete 0 0 0 454 Germany Russian Bolshaya Kolopatkaya river Russia Russian Bolshaya Kolopatkaya river 70 151 unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Sediment archaeal anaerobic methane oxidation (AOM) communities from Eel River Basin near Mendocino, California from Eel River Basin near Mendocino, California Methane-Oxidizing Archaea from Deep-Sea Sediments Gm00005 Metagenome complete Public DOE Joint Genome Institute, MBARI DOE DeLong EF delong@mit.edu http://web.mit.edu/be/people/delong.htm 2004-09-03 Science 305, 1457-62 Environmental 412755 13702 000632_GCAT 2004175001 Genbank Complete Microbial cells, including ANME-1, ANME-2, and associated SRB, were enriched from the sediment using density centrifugation and size selection. 2116 2332 0 USA 6- to 9-cm-deep sediment pushcore interval (PC45) obtained from the Eel River Basin off the Mendocino California coastline USA Eel River Basin, California 40.785 -124.596 dive T201 Anaerobe None Deep sea, Marine, Sediment Methane oxidation, Sulfate reducer Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Acidiphilium BACTERIAL Acidiphilium multivorum AIU301 AIU301 NBRC 100883 Gi01298 Genome incomplete Public NITE Bioremediation, Biotechnological, Environmental 62140 000633_GCAT 4493 0 0 0 0 Japan Pyritic acid mine drainage Pyritic acid mine drainage Aerobe Rod-shaped Mesophile gram- Free living None Fresh water Motile Acidophile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter BACTERIAL Acinetobacter baylyi ADP1 ADP1 ATCC 33305 Gi00009 Genome incomplete Proprietary Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Biotechnological 202950 000634_GCAT 331932 0 3583 3356 40.4 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Sludge, Soil Nonmotile Chemoheterotroph, Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter BACTERIAL Acinetobacter baumannii Gi00007 Genome incomplete Proprietary Genome Therapeutics Human Pathogen, Medical 470 000635_GCAT 321159 0 Complete 0 0 40 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Pneumonia, Nosocomial infection Fresh water, Host Nonmotile Pathogen Chemoheterotroph, Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter baumannii BACTERIAL Acinetobacter baumannii AB0057 AB0057 Acinetobacter baumannii AB0057 Gc00885 Gi02526 Genome Complete and Published Public Case Western Reserve Univ Bonomo R robert.bonomo@va.gov 2008-11-17 Unpublished Human Pathogen, Medical 480119 21111 003252_GCAT 363772 643348502 NC_011586 Complete 25x 454, 1.7x Sanger 4050 3790 1 1 40 Sanger, 454 USA Bloodstream infection of a patient at Walter Reed Army Medical Center. Mmultidrug-resistant isolate USA Bloodstream infection of a patient at Walter Reed Army Medical Center. Homo sapiens Patient with bloodsream infection Blood Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Pneumonia, Nosocomial infection Host, Fresh water Nonmotile Pathogen Chemoheterotroph, Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter BACTERIAL Acinetobacter baumannii VEB VEB Acinetobacter baumannii Gi00741 Genome incomplete Public Genoscope Medical, Human Pathogen 470 13000 000636_GCAT 321159 0 In progress 0 0 40 France Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Pneumonia, Nosocomial infection Fresh water, Host Nonmotile Pathogen Heterotroph, Chemoheterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter baumannii BACTERIAL Acinetobacter baumannii SDF SDF Acinetobacter baumannii SDF Gc00730 Gi00742 Genome Complete and Published Public Genoscope Genoscope seqref@genoscope.cns.fr 2008-02-26 PLoS One 3, e1805 Human Pathogen, Medical 509170 13001 000637_GCAT 266360 641522603 NC_010400 Complete 3421 3141 1 3 39.2 France Body lice collected from homeless people living in France France Body lice collected from homeless people living in France Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Pneumonia, Nosocomial infection Fresh water, Host 37 Nonmotile Pathogen Heterotroph, Chemoheterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter baumannii BACTERIAL Acinetobacter baumannii ACICU ACICU Acinetobacter baumannii ACICU Gc00810 Gi01666 Genome Complete and Published Public CNR - National Research Council Carattoli A alecara@iss.it ACICU 2008-04-15 Antimicrob. Agents Chemother. 52, 2616-25 Human Pathogen, Medical 405416 17827 000638_GCAT 642555102 NC_010611 Complete 23x FGENESB, GeneMark, Glimmer 3904 3841 1 2 39 454-FLX Italy Hospital strain from a clone that caused an outbreak in Rome in 2005 isolate H34 epidemic multidrug-resistant strain 2005 Italy Hospital strain in Rome 41.895466 12.482324 Homo sapiens Patient Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Pneumonia, Nosocomial infection Host, Fresh water 37 Nonmotile Pathogen Heterotroph, Chemoheterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter BACTERIAL Acinetobacter baylyi ADP1 ADP1 Gi01508 Genome incomplete Public Genoscope Barbe V vbarbe@genoscope.cns.fr Biotechnological 202950 000640_GCAT 331932 0 Complete 3598 3325 1 0 40.3 France Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Sludge, Soil Nonmotile Heterotroph, Chemoheterotroph Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Aggregatibacter Aggregatibacter actinomycetemcomitans BACTERIAL Aggregatibacter actinomycetemcomitans HK1651 HK1651 Aggregatibacter actinomycetemcomitans HK1651 Gi00010 Genome incomplete Public Univ of Oklahoma NIH-NIDCR Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Human Pathogen, Animal Pathogen, Medical 272556 32179 000641_GCAT 0 Complete 2105 0 37 USA clinical isolate obtained from Professor Mogens Kilian at the University of Aarhus Denmark clinical isolate obtained from Professor Mogens Kilian at the University of Aarhus Homo sapiens Patient Oral Facultative Rod-shaped Mesophile gram- Symbiotic Parasitic Chains, Pairs, Singles Periodontal infection, Periodontitis Oral microflora, Host 37 Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus pleuropneumoniae BACTERIAL Actinobacillus pleuropneumoniae 4074 4074 1 Actinobacillus pleuropneumoniae serovar 1 str. 4074 Gi00011 Genome incomplete Public Univ of Oklahoma Dyer DW David-Dyer@ouhsc.edu Aple Swine Pathogen, Medical, Animal Pathogen 228399 198 000642_GCAT 4074 638341004 NZ_AACK00000000 Draft 2292 2196 41.4 Sanger USA Respiratory tract Facultative Rod-shaped Mesophile gram- Symbiotic Parasitic Chains, Pairs, Singles Necrotizing pleuropneumonia Respiratory tract, Host 37 Nonmotile Virulent, Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus pleuropneumoniae BACTERIAL Actinobacillus pleuropneumoniae JL03 JL03 3 Actinobacillus pleuropneumoniae serovar 3 str. JL03 Gc00708 Gi01949 Genome Complete and Published Public Huazhong Agricultural Univ NFSC Chen H chenhch@mail.hzau.edu.cn APJL 2008-01-16 PLoS ONE 3, e1450 Medical, Animal Pathogen, Swine Pathogen 434271 19135 002575_GCAT 269867 641522604 NC_010278 Complete 1.5-4 Kb, 6-8 Kb Phred, Staden 8.6x Glimmer, RBSFinder, FgenesB 2242 2200 1 0 41 Sanger China Lung of a pig from a Chinese commercial pig farm in 2003 2003 China Lung of a pig from a Chinese commercial pig farm in 2003 Pig Respiratory tract Facultative Rod-shaped Mesophile gram- Symbiotic Parasitic Pairs, Singles Necrotizing pleuropneumonia Respiratory tract, Host 37 Nonmotile Parasite, Virulent, Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus pleuropneumoniae BACTERIAL Actinobacillus pleuropneumoniae sv 5 sv 5 7 Actinobacillus pleuropneumoniae serovar 5 Gi00012 Genome incomplete Public Institute for Biological Sciences Nash J http://endeavour.bio.nrc.ca/index.php Animal Pathogen, Swine Pathogen, Medical 44294 200 000643_GCAT 0 2159 0 37 Canada Respiratory tract Facultative Rod-shaped Mesophile gram- Symbiotic Parasitic Chains, Pairs, Singles Necrotizing pleuropneumonia Respiratory tract, Host Nonmotile Pathogen, Virulent Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus pleuropneumoniae BACTERIAL Actinobacillus pleuropneumoniae sv 7 sv 7 7 Actinobacillus pleuropneumoniae serovar 7 Gi00013 Genome incomplete Public Univ of Oklahoma Dyer DW David-Dyer@ouhsc.edu Medical, Animal Pathogen, Swine Pathogen 209841 332 000644_GCAT 0 2075 0 37 USA Respiratory tract Facultative Rod-shaped Mesophile gram- Symbiotic Parasitic Chains, Pairs, Singles Necrotizing pleuropneumonia Respiratory tract, Host Nonmotile Virulent, Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces Actinomyces naeslundii BACTERIAL Actinomyces naeslundii MG1 MG1 Actinomyces naeslundii MG1 Gi00014 Genome incomplete Public J. Craig Venter Institute NIH-NIDCR Read TD http://www.tigr.org/~tread/ Medical, Dental Pathogen, Human Pathogen 240017 12510 000647_GCAT 0 3000 0 0 USA Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Periodontal infection, Actinomycosis, Gingivitis Human oral microflora, Host Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces Actinomyces odontolyticus BACTERIAL Actinomyces odontolyticus DSM 43331 DSM 43331 Actinomyces odontolyticus ATCC 17982 DSM 43331, ATCC 17982 No Gi01705 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu ACTODO Dental Pathogen, Human Gut Microbiome Initiative (HGMI), Human Microbiome Project (HMP), Human Pathogen, Medical 411466 18171 000648_GCAT 50 640963058 NZ_AAYI00000000, AAYI00000000 Draft 45682 PCAP 11.8x GeneMark v3.3, Glimmer2 v2.13 15 2393 2214 65.4 454-GS20, Sanger USA Human dental cavity ATCC 17982 Human dental cavity Homo sapiens Oral Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Septicemia, Oral abscesses, Lung infection, Eye infection Host, Human intestinal microflora, Human oral microflora Nonmotile Pathogen Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Bryantella formatexigens BACTERIAL Bryantella formatexigens I-52, DSM 14469 I-52, DSM 14469 Bryantella formatexigens DSM 14469 DSM 14469 Yes Gi02527 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu http://genome.wustl.edu/Bio/email_data.cgi?staff=Sandra%20Clifton Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 478749 21051 003253_GCAT 186 643886107 ACCL00000000, NZ_ACCL00000000 Complete 304538 Newbler 2.0.00.20 14.1X GeneMark v3.3, Glimmer2 v2.13 123 4500 4919 49 454-FLX, Sanger USA Human feces DSM 14469 USA 14532100 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host, Human intestinal microflora, Human fecal Nonmotile Cellulose degrader Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium adolescentis BACTERIAL Bifidobacterium adolescentis L2-32 L2-32 Bifidobacterium adolescentis L2-32 Unknown Gi01706 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu BIFADO Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411481 18197 000649_GCAT 159 268343 640963015 NZ_AAXD00000000, AAXD00000000 Draft 51756 PCAP 11.7x GeneMark v3.3, Glimmer2 v2.13 505 2385 2499 59 454-GS20, Sanger USA Infant feces Infant feces Homo sapiens infant Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles None Host, Human intestinal microflora, Human fecal 37 Nonmotile Non-Pathogen Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Collinsella Collinsella aerofaciens BACTERIAL Collinsella aerofaciens ATCC 25986 ATCC 25986 Collinsella aerofaciens ATCC 25986 CCUG 28087, KCTC 3647, JCM 10188, DSM 3979, ATCC 25986 Yes Gi01707 Genome incomplete Public Washington Univ HMP Gordon J jgordon@wustl.edu COLAER Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411903 18167 000650_GCAT 268 640612206 NZ_AAVN00000000, AAVN00000000 Draft PCAP 15x 454, 4x Sanger GeneMark v3.3, Glimmer2 v2.13 168 2439 2437 60.3 454-GS20, Sanger USA Human feces ATCC 25986 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Human intestinal microflora, Host Nonmotile Non-Pathogen Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Subdoligranulum variabile BACTERIAL Subdoligranulum variabile DSM 15176 DSM 15176 Subdoligranulum variabile DSM 15176 DSM 15176, CCUG 47106 Yes Gi01708 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411471 18181 000651_GCAT 858 643886143 NZ_ACBY00000000, ACBY00000000 Draft Newbler 2.0.0-PostRelease-10/28/2008 23.9X 140 3200 3401 57 454-FLX, Sanger USA Human feces collected in Denmark DSM 15176 Denmark Human feces collected in Denmark Homo sapiens Gastrointestinal tract Feces Anaerobe Nonsporulating Mesophile gram- Free living None Human intestinal microflora, Host 37 Nonmotile Non-Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides caccae BACTERIAL Bacteroides caccae ATCC 43185 ATCC 43185 Bacteroides caccae ATCC 43185 ATCC 43185 Yes Gi01709 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu BACCAC Human Gut Microbiome Initiative (HGMI), Medical, Human Pathogen, Human Microbiome Project (HMP) 411901 18163 000652_GCAT 109 251843 640963023 AAVM00000000, NZ_AAVM00000000 Draft 58629 PCAP 15-20x 454, 4x Sanger 479 4564 3937 41.9 454-GS20, Sanger USA Human fecal sample ATCC 43185T USA Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Inflammatory bowel disease Human intestinal microflora, Host 37 Nonmotile Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides coprocola BACTERIAL Bacteroides coprocola M16, DSM 17136 M16, DSM 17136 Bacteroides coprocola DSM 17136 DSM 17136, JCM 12979 Yes Gi02355 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi BACCOP Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 470145 20521 SRP000014 003083_GCAT 113 315575 642791613 ABIY00000000, NZ_ABIY00000000 Draft 53029 PCAP 8.8x GeneMark v3.3, Glimmer2 v2.13 569 4295 4396 41 454-GS20, Sanger USA Human feces from Japan DSM 17136 Japan Human feces from Japan Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host, Human intestinal microflora, Human fecal 37 Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides intestinalis BACTERIAL Bacteroides intestinalis 341, DSM 17393 341, DSM 17393 Bacteroides intestinalis DSM 17393 DSM 17393, JCM 13265 Yes Gi02356 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi BACINT Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 471870 20523 SRP000015 003084_GCAT 122 313166 642791621 NZ_ABJL00000000, ABJL00000000 Draft 61100 PCAP 7x GeneMark v3.3, Glimmer2 v2.13 9 6052 4984 42 454-GS20, Sanger USA Human feces collected in Japan DSM 17393 Japan Human feces collected in Japan Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host, Human intestinal microflora, Human fecal Nonmotile Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sporogenes BACTERIAL Clostridium sporogenes ATCC 15579 ATCC 15579 Clostridium sporogenes ATCC 15579 ATCC 15579 Unknown Gi02358 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi CLOSPO Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 471871 20549 SRS000018 003086_GCAT 265 642791615 ABKW00000000, NZ_ABKW00000000 Draft 53828 PCAP 8.73 GeneMark v3.3, Glimmer2 v2.13 5 4102 3873 28 454-GS20, Sanger USA Human feces ATCC 15579 Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Human intestinal microflora, Host Motile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Proteus Proteus penneri BACTERIAL Proteus penneri ATCC 35198 ATCC 35198 Proteus penneri ATCC 35198 ATCC 35198, CDC 4732-68 Unknown Gi02361 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 471881 20551 SRS000019 003089_GCAT 696 643886117 ABVP00000000, NZ_ABVP00000000 Draft PCAP 51.7X 28 3747 4997 37.9 454-FLX, Sanger USA Human feces, Texas ATCC 35198 USA Human feces Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Surgical wound infection, Septicemia, Opportunisitc urinary tract infection Human intestinal microflora, Host 37 Motile Opportunistic Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Providencia Providencia stuartii BACTERIAL Providencia stuartii ATCC 25827 ATCC 25827 Providencia stuartii ATCC 25827 ATCC 35198 Unknown Gi02362 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi PstuA Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 471874 20553 SRS000020 003090_GCAT 702 280258 641736172 NZ_ABJD00000000, ABJD00000000 Draft PCAP 8.5x GeneMark v3.3, Glimmer2 v2.13 252 4603 4660 41 454-GS20, Sanger USA Human feces ATCC 25827 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Surgical wound infection, Septicemia, Opportunisitc urinary tract infection Host, Human intestinal microflora 37 Motile Opportunistic Pathogen Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Ruminococcus Ruminococcus lactaris BACTERIAL Ruminococcus lactaris ATCC 29176 ATCC 29176 Ruminococcus lactaris ATCC 29176 ATCC 29176 Yes Gi02363 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi RUMLAC Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 471875 20557 SRS000022 003091_GCAT 750 348006 642791604 NZ_ABOU00000000, ABOU00000000 Draft PCAP 11x GeneMark v3.3, Glimmer2 v2.13 81 2729 2817 42.7 454-GS20, Sanger USA Human feces ATCC 29176 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living None Human intestinal microflora, Host 37 Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus infantarius BACTERIAL Streptococcus infantarius infantarius ATCC BAA-102 ATCC BAA-102 Streptococcus infantarius subsp. infantarius ATCC BAA-102 ATCC BAA-102, CCUG 43820, LMG 19578 Yes Gi02364 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi STRINF Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 471872 20527 SRS000017 003092_GCAT 821 265407 641736171 NZ_ABJK00000000, ABJK00000000 Draft PCAP 13.9x GeneMark v3.3, Glimmer2 v2.13 29 1925 2111 37 454-GS20, Sanger USA Feces from a health human infant ATCC BAA-102 Feces from a health human infant Homo sapiens Infant Healthy Gastrointestinal tract Feces Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs None Host, Human intestinal microflora 37 Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes M49, NZ131 M49, NZ131 M49 Streptococcus pyogenes NZ131 ATCC BAA-1633 Gc00871 Gi02365 Genome Complete and Published Public Washington Univ Savic DJ 2008-10-16 J. Bacteriology 190, 7773-85 Medical, Human Pathogen 471876 20707 003093_GCAT 643348577 NC_011375 Complete 1815 1700 1 0 0 Sanger USA "Patient with acute glomerulonephritis and was provided by Diana Martin, New Zealand Communicable Diseases Center, Porirua, New Zealand" New Zealand Patient with acute glomerulonephritis and was provided by Diana Martin, New Zealand Communicable Diseases Center, Porirua, New Zealand Homo sapiens Patient with cute glomerulonephritis Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Glomerulonephritis Host Nonmotile Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Parabacteroides Parabacteroides merdae BACTERIAL Parabacteroides merdae ATCC 43184 ATCC 43184 Parabacteroides merdae ATCC 43184 ATCC 43184 Yes Gi01710 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu PARMER Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411477 18193 000653_GCAT 142 640963016 NZ_AAXE00000000, AAXE00000000 Draft 47263 PCAP 7.1x GeneMark v3.3, Glimmer2 v2.13 226 4431 4569 45.3 454-GS20, Sanger USA Human fecal sample collected in Texas ATCC 43184T USA Human fecal sample collected in Texas Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host, Human fecal, Human intestinal microflora Nonmotile Non-Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides ovatus BACTERIAL Bacteroides ovatus ATCC 8483 ATCC 8483 Bacteroides ovatus ATCC 8483 ATCC 8483 Yes Gi01711 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu BACOVA Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411476 18191 000654_GCAT 123 258691 641380449 NZ_AAXF00000000, AAXF00000000 Draft 71211 PCAP 6.9x GeneMark v3.3, Glimmer2 v2.13 109 6463 5622 41.6 454-GS20, Sanger USA Human fecal sample ATCC 8483T Human fecal sample Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Human fecal, Host, Human intestinal microflora Nonmotile Non-Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides uniformis BACTERIAL Bacteroides uniformis ATCC 8492 ATCC 8492 Bacteroides uniformis ATCC 8492 ATCC 8492 Yes Gi01712 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu BACUNI Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411479 18195 000655_GCAT 140 641380447 NZ_AAYH00000000, AAYH00000000 Draft 60055 PCAP 8.1x 94 4717 4727 46.5 454-GS20, Sanger USA Human fecal sample ATCC 8492 Human fecal sample Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Human intestinal microflora, Groundwater, Host, Human fecal Nonmotile Non-Pathogen Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Anaerostipes Anaerostipes caccae BACTERIAL Anaerostipes caccae DSM 14662 DSM 14662 Anaerostipes caccae DSM 14662 DSM 14662 Yes Gi01713 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi ANACAC Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411490 18213 000656_GCAT 81 259772 641736227 NZ_ABAX00000000, ABAX00000000 Draft 55934 PCAP 8.7x GeneMark v3.3, Glimmer2 v2.13 67 3605 3838 44.3 454-GS20, Sanger USA Human feces collected in UK DSM 14662 United Kingdom Human feces collected in UK Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Mesophile gram+ Free living None Host, Human intestinal microflora Non-Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides capillosus BACTERIAL Bacteroides capillosus ATCC 29799 ATCC 29799 Bacteroides capillosus ATCC 29799 ATCC 29799 Yes Gi01714 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu BACCAP Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411467 18173 000657_GCAT 110 69480 640963014 AAXG00000000, NZ_AAXG00000000 Draft 56246 PCAP 8.2x GeneMark v3.3, Glimmer2 v2.13 155 4241 4902 59.1 454-GS20, Sanger USA Human fecal sample ATCC 29799 Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Various infections Human intestinal microflora, Host, Human fecal 37 Nonmotile Opportunistic Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium bolteae BACTERIAL Clostridium bolteae ATCC BAA-613 ATCC BAA-613 Clostridium bolteae ATCC BAA-613 ATCC BAA-613 Yes Gi01715 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi CLOBOL Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411902 18165 000658_GCAT 215 641380428 NZ_ABCC00000000, ABCC00000000 Draft 47341 PCAP 5,4x GeneMark v3.3, Glimmer2 v2.13 132 6556 7349 49 454-GS20, Sanger USA Human feces ATCC BAA-613 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Host, Human intestinal microflora Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium scindens BACTERIAL Clostridium scindens ATCC 35704 ATCC 35704 Clostridium scindens ATCC 35704 ATCC 35704 Yes Gi01716 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi CLOSCI Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411468 18175 000659_GCAT 235 50457 641736197 ABFY00000000, NZ_ABFY00000000 Draft 49210 PCAP 9.1x GeneMark v3.3, Glimmer2 v2.13 115 3619 4078 46 454-GS20, Sanger USA Human feces collected in NY ATCC 35704 USA Human feces collected in NY 40.756054 -73.986951 Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Human intestinal microflora, Host Motile Chemoorganotroph Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae Clostridium spiroforme BACTERIAL Clostridium spiroforme DSM 1552 DSM 1552 Clostridium spiroforme DSM 1552 NCTC 11211, ATCC 29900, DSM 1552 Yes Gi01922 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi CLOSPI Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 428126 18925 002546_GCAT 264 270245 641736169 NZ_ABIK00000000, ABIK00000000 Draft 50988 PCAP 13.2x GeneMark v3.3, Glimmer2 v2.13 31 2507 2533 28 454-GS20, Sanger USA Human feces collected in USA DSM 1552 USA Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Human intestinal microflora, Host 37 Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium symbiosum BACTERIAL Clostridium symbiosum ATCC 14940 ATCC 14940 Clostridium symbiosum ATCC 14940 ATCC 14940 Yes Gi01717 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411472 18183 000660_GCAT 266 0 In progress 7.8x 0 0 0 454, Sanger USA Human feces ATCC 14940 Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Host, Human intestinal microflora Motile Non-Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sp. A2-232 BACTERIAL Clostridium sp A2-232 A2-232 Clostridium sp. A2-232 Unknown Gi01741 Genome targeted Public NIH Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411488 18209 000661_GCAT 230 0 In progress 0 0 0 USA Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Human intestinal microflora, Host Motile Non-Pathogen Chemoorganotroph Bacteria Synergistetes Synergistia Synergistales Synergistaceae Synergistes BACTERIAL Synergistes jonesii 78-1 78-1 Yes Gi01742 Genome incomplete Public J. Craig Venter Institute NSF Eisen J jaeisen@ucdavis.edu Tree of Life 2754 000662_GCAT 1662 0 Complete 1 2742 2837 56.5 USA Goat rumen Goat Gastrointestinal tract Rumen Obligate anaerobe Rod-shaped Mesophile 0.6 - 0.8 um 1.2 - 1.8 um gram- Free living None Host 39 Motile Non-Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sp. L2-50 BACTERIAL Clostridium sp L2-50 L2-50 Clostridium sp. L2-50 Unknown Gi01718 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi CLOL Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411489 18211 000663_GCAT 221 641380448 NZ_AAYW00000000, AAYW00000000 Draft 51587 PCAP 10.6 GeneMark v3.3, Glimmer2 v2.13 124 2954 3004 41.3 454-GS20, Sanger USA Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Human intestinal microflora, Host Motile Non-Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sp. M62/1 BACTERIAL Clostridium sp M62/1 M62/1 Clostridium sp. M62/1 Unknown Gi01719 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411486 18205 SRP000118 000664_GCAT 234 643886005 NZ_ACFX00000000, ACFX00000000 Complete 549861 Newbler 2.0.0-PostRelease-10/28/2008 29X GeneMark v3.3, Glimmer2 v2.13 114 7600 4266 0 454, Sanger USA Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Human intestinal microflora, Host Motile Non-Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sp. SS2/1 BACTERIAL Clostridium sp. SS2/1 SS2/1 Clostridium sp. SS2/1 Unknown Gi01720 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi CLOSS Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411484 18201 000665_GCAT 226 258176 641736270 NZ_ABGC00000000, ABGC00000000 Draft 46033 PCAP 6x GeneMark v3.3, Glimmer2 v2.13 148 3141 3243 37 454, Sanger USA Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Singles, Pairs None Human intestinal microflora, Host Motile Non-Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Coprococcus Coprococcus eutactus BACTERIAL Coprococcus eutactus ATCC 27759 ATCC 27759 Coprococcus eutactus ATCC 27759 ATCC 27759 Yes Gi01721 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi COPEUT Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411474 18187 000666_GCAT 275 196077 641380422 ABEY00000000, NZ_ABEY00000000 Draft PCAP 9.4x GeneMark v3.3, Glimmer2 v2.13 55 3102 3051 43 454-GS20, Sanger USA Human feces ATCC 27759 Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs None Human intestinal microflora, Host 37 Nonmotile Non-Pathogen Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Coprococcus Coprococcus comes BACTERIAL Coprococcus comes ATCC 27758 ATCC 27758 Coprococcus comes ATCC 27758 ATCC 27758 Unknown Gi02359 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 470146 20525 SRS000016 003087_GCAT 274 192421 643886116 ABVR00000000, NZ_ABVR00000000 Complete PCAP 42.5X 8190 3238 3977 42.5 454-FLX, Sanger USA Human feces ATCC 27758 Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs None Host, Human intestinal microflora 37 Nonmotile Non-Pathogen Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Dorea Dorea formicigenerans BACTERIAL Dorea formicigenerans ATCC 27755 ATCC 27755 Dorea formicigenerans ATCC 27755 ATCC 27755 Yes Gi01722 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi DORFOR Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411461 18155 SRS000008 000667_GCAT 331 261912 641736133 NZ_AAXA00000000, AAXA00000000 Draft PCAP 7.5x 121 3186 3348 40 454, Sanger USA Human feces ATCC 27755 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Human intestinal microflora, Host Non-Pathogen Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Dorea Dorea longicatena BACTERIAL Dorea longicatena DSM 13814 DSM 13814 Dorea longicatena DSM 13814 DSM 13814 Yes Gi01723 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi DORLON Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411462 18157 000668_GCAT 332 640963046 NZ_AAXB00000000, AAXB00000000 Draft PCAP 10.2x 86 2913 3304 41 454, Sanger USA Human feces DSM 13814 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Human intestinal microflora, Host 37 Non-Pathogen Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium Eubacterium hallii BACTERIAL Eubacterium hallii DSM 3353 DSM 3353 Eubacterium hallii DSM 3353 DSM 3353, ATCC 27751 Yes Gi01724 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Human Microbiome Project (HMP), Medical 411469 18177 000669_GCAT 371 643886203 NZ_ACEP00000000, ACEP00000000 Complete Newbler 2.0.0-PostRelease-10/28/2008 25.2X 175 3290 3300 38 454-GS20, 454-FLX USA Human feces DSM 3353 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Mesophile gram+ Free living None Human intestinal microflora, Host Non-Pathogen Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium Eubacterium plautii BACTERIAL Eubacterium plautii ATCC 29863 ATCC 29863 Eubacterium plautii ATCC 29863 ATCC 29863 Yes Gi01725 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411475 18189 000670_GCAT 372 0 In progress 0 0 0 454, Sanger USA Human feces ATCC 29863 Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Mesophile gram- Free living None Human intestinal microflora, Host Non-Pathogen Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium Eubacterium sp. L2-7 BACTERIAL Eubacterium halii L2-7, DSM 17630 L2-7, DSM 17630 Eubacterium sp. L2-7 DSM 17630 No Gi01726 Genome targeted Public NIH Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411487 18207 SRP000117 000671_GCAT 370 14078 0 In progress 0 0 0 Sanger, 454 USA feces from an 11 month old infant in Scotland United Kingdom Homo sapiens Infant (11 month old) Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host, Human intestinal microflora Non-Pathogen Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium Eubacterium ventriosum BACTERIAL Eubacterium ventriosum ATCC 27560 ATCC 27560 Eubacterium ventriosum ATCC 27560 ATCC 27560 Yes Gi01727 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu EUBVEN Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411463 18159 000672_GCAT 375 640963022 NZ_AAVL00000000, AAVL00000000 Draft 54525 PCAP 87 2869 2881 34.9 454-FLX, Sanger USA Human feces ATCC 27560 Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Mesophile gram+ Free living None Host, Human intestinal microflora Non-Pathogen Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Faecalibacterium Faecalibacterium prausnitzii BACTERIAL Faecalibacterium prausnitzii A2-165 A2-165 Faecalibacterium prausnitzii A2-165 DSM 17677 No Gi01728 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411483 18199 000673_GCAT 387 18361 0 ACOP00000000, NZ_ACOP00000000 Draft 14.6x 0 0 56 Sanger, 454 USA Human, faecal sample; Scotland Emma Allen-Vercoe, U. Guelph, Canada United Kingdom Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Human intestinal microflora, Host Nonmotile Non-Pathogen Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Faecalibacterium Faecalibacterium prausnitzii BACTERIAL Faecalibacterium prausnitzii M21/2 M21/2 Faecalibacterium prausnitzii M21/2 Unknown Gi01729 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi FAEPRAM Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411485 18203 000674_GCAT 386 262744 641380420 NZ_ABED00000000, ABED00000000 Draft PCAP 8.4x GeneMark v3.3, Glimmer2 v2.13 45 3094 3644 56 454-GS20, Sanger USA Human feces Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Human intestinal microflora, Host Nonmotile Non-Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Parvimonas micra BACTERIAL Parvimonas micra VPI 5464, ATCC 33270 VPI 5464, ATCC 33270 Parvimonas micra ATCC 33270 GIFU 7824, ATCC 33270, NCTC 11808, DSM 20468 Yes Gi01730 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi PEPMIC Human Gut Microbiome Initiative (HGMI), Medical, Human Pathogen, Human Microbiome Project (HMP) 411465 18169 000675_GCAT 632 641380421 NZ_ABEE00000000, ABEE00000000 Complete PCAP 15x 87 1703 1721 28 454-GS20, Sanger USA ATCC 33270 Homo sapiens Gastrointestinal tract Feces Anaerobe Coccus-shaped Mesophile gram+ Free living Periodontal infection Human intestinal microflora, Human oral microflora, Host, Human mucocutaneous surfaces Pathogen Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Ruminococcus Ruminococcus callidus BACTERIAL Ruminococcus callidus ATCC 27760 ATCC 27760 Ruminococcus callidus ATCC 27760 ATCC 27760 Unknown Gi01731 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411473 18185 000676_GCAT 745 16053 0 In progress 0 0 0 Sanger, 454 USA Human feces ATCC 27760 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living None Human intestinal microflora, Host 37 Nonmotile Non-Pathogen Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Ruminococcus Ruminococcus gnavus BACTERIAL Ruminococcus gnavus ATCC 29149 ATCC 29149 Ruminococcus gnavus ATCC 29149 ATCC 29149 Yes Gi02453 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi RUMGNA Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411470 18179 000677_GCAT 746 14032 640963057 NZ_AAYG00000000, AAYG00000000 Draft PCAP 8.7x 105 3501 3974 42 Sanger, 454-GS20 USA Human feces ATCC 29149 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living None Host, Human intestinal microflora 40 Nonmotile Non-Pathogen Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Ruminococcus Ruminococcus obeum BACTERIAL Ruminococcus obeum ATCC 29174 ATCC 29174 Ruminococcus obeum ATCC 29174 ATCC 29174 Yes Gi01732 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi RUMOBE Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411459 18147 000678_GCAT 752 13993 640963024 AAVO00000000, NZ_AAVO00000000 Draft PCAP 8.9x 90 3624 4231 41.6 Sanger, 454 USA ATCC 29174 Homo sapiens Gastrointestinal tract Feces Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Singles None Host, Human intestinal microflora Nonmotile Non-Pathogen Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Ruminococcus Ruminococcus torques BACTERIAL Ruminococcus torques ATCC 27756 ATCC 27756 Ruminococcus torques ATCC 27756 ATCC 27756 Yes Gi01733 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi RUMTOR Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 411460 18153 000679_GCAT 754 14012 640963025 NZ_AAVP00000000, AAVP00000000 Draft PCAP 13x 151 2739 2929 41 Sanger, 454 USA ATCC 27756 Homo sapiens Gastrointestinal tract Feces Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living None Human intestinal microflora, Host 37 Nonmotile Non-Pathogen Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio piger BACTERIAL Desulfovibrio piger VPI C3-23, ATCC 29098 VPI C3-23, ATCC 29098 Desulfovibrio piger ATCC 29098 DSM 749, ATCC 29098 Yes Gi01734 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Microbiome Project (HMP), Human Gut Microbiome Initiative (HGMI), Medical 411464 18161 000680_GCAT 323 642979316 NZ_ABXU00000000, ABXU00000000 Complete Newbler 2.0.00.20 54.8X 523 2826 3185 63 454-Titanium USA human feces ATCC 29098 human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Human intestinal microflora, Host, Human fecal Motile Non-Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia afzelii BACTERIAL Borrelia afzelii K78 K78 Borrelia afzelii K78 Gi01735 Genome incomplete Public BOVAC Medical, Human Pathogen 411555 18143 000681_GCAT 0 0 0 0 USA Skin lesion from a Lyme disease patient in Europe in 1993 1993 Skin lesion from a Lyme disease patient in Europe in 1993 Homo sapiens Patient with Lyme disease Skin Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Acrodermatitis chronica atrophicans, Lyme disease Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia duttonii BACTERIAL Borrelia duttonii Ly Ly Borrelia duttonii Ly Gc00861 Gi01736 Genome Complete and Published Public Marseille-Nice Genopole Drancourt M michel.drancourt@medecine.univ-mrs.fr 2008-09-15 PLoS Genetics 4, e1000185 Medical, Human Pathogen 412419 18231 000682_GCAT 311337 643348518 NC_011229 Complete 931 820 1 16 27 France 2-year-old girl with tick-borne relapsing fever in Tanzania Tanzania 2-year-old girl with tick-borne relapsing fever in Tanzania Homo sapiens Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Tick-borne relapsing fever Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia recurrentis BACTERIAL Borrelia recurrentis A1 A1 Borrelia recurrentis A1 Gc00860 Gi01737 Genome Complete and Published Public Marseille-Nice Genopole Drancourt M michel.drancourt@medecine.univ-mrs.fr 2008-09-15 PLoS Genetics 4, e1000185 Medical, Human Pathogen 412418 18233 000683_GCAT 4233 643348519 NC_011244 Complete 930 800 1 7 27 France Adult patient with louse-borne relapsing fever in Ethiopia Ethiopia Adult patient with louse-borne relapsing fever in Ethiopia Homo sapiens Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Louse-borne relapsing fever Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia turicatae BACTERIAL Borrelia turicatae 91E135 91E135 Borrelia turicatae 91E135 Gc00791 Gi01738 Genome Complete and Published Public RML-NIAID BT 2008-06-05 Unpublished Medical, Human Pathogen 314724 13597 000684_GCAT 349112 642555109 NC_008710 Complete 9173 852 1 0 0 USA Soft tick Ornithodoros turicatae in USA USA Soft tick Ornithodoros turicatae in USA Ornithodoros turicatae Aerobe Spiral-shaped Nonsporulating Mesophile gram- 34597 Singles Tick-borne relapsing fever Host Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis holarctica 257 257 Francisella tularensis subsp. holarctica 257 Gi01739 Genome incomplete Public Broad Institute Animal Pathogen, Medical, Human Pathogen 412422 18251 000685_GCAT 0 NZ_AAUD00000000 Draft 1900 0 32.1 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Tularemia Fresh water, Host Nonmotile Pathogen Bacteria Verrucomicrobia Opitutae Opitutaceae Opitutaceae bacterium TAV2 BACTERIAL Opitutaceae sp TAV2 TAV2 Opitutaceae bacterium TAV2 Gi01740 Genome Permanent Draft Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org ObacDRAFT Biofuels, Energy production, Biotechnological 278957 18333 000686_GCAT 106892 640963002 NZ_ABEA00000000 Complete Level 1: Standard Draft 5000 4171 0 USA Gut of a wood-feeding termite Gut of a wood-feeding termite Termite Gastrointestinal tract Gut Facultative Coccus-shaped Mesophile gram- Free living None Host Bacteria Actinobacteria Actinobacteria (class) BACTERIAL Agreia sp PHSC20C1 PHSC20C1 Marine actinobacterium marine actinobacterium PHSC20C1 Gi00832 Genome incomplete Public Desert Research Institute, J. Craig Venter Institute Moore Foundation Murray A http://www.dri.edu/People/alison/ A Environmental, Marine Microbial Initiative (MMI) 312284 13373 000688_GCAT 154235 638341246 NZ_AAOB00000000 Draft 2766 2760 59 Sanger USA Surface water off the Western Antarctic Penninsula Coastal Antarctica - western Antarctic Peninsula -64.76667 -64.06667 Surface Aerobe Rod-shaped Nonsporulating Psychrophile gram+ Free living None Marine 20 Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Thiotrichaceae Thioploca Thioploca araucae BACTERIAL Thioploca araucae Tha-CCL Tha-CCL Thioploca araucae Tha-CCL Gi01693 Genome incomplete Public J. Craig Venter Institute Moore Foundation Marine Microbial Initiative (MMI), Environmental 439499 19383 000689_GCAT 0 0 0 0 USA Ocean shelf off the coast of Concepcion Chile Chile Ocean shelf off the coast of Concepcion Chile -36.814815 -73.029257 Filament-shaped Mesophile gram- Free living None Marine Motile Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacterales bacterium Y4I BACTERIAL Rhodobacterales sp. Y4I Y4I Rhodobacterales bacterium Y4I Gi01694 Genome incomplete Public J. Craig Venter Institute Moore Foundation Marine Microbial Initiative (MMI), Environmental 439496 19349 000690_GCAT 0 NZ_ABXF00000000 Draft 4326 0 64 USA Coastal seawater near St Mary's Georgia USA Coastal seawater near St Mary's Georgia 30.742931 -81.554188 Mesophile gram- Free living None Coastal, Marine Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens BACTERIAL Agrobacterium radiobacter K84 K84 bv II Agrobacterium radiobacter K84 ATCC BAA-846 Gc00942 Gi00020 Genome Complete and Published Public Univ of Washington NSF Nester EW gnester@u.washington.edu Arad 2009-01-27 J Bacteriology 191, 2501-11 Agricultural, Plant Pathogen, Medical, Human Pathogen 311403 13402 000691_GCAT 643348504 NC_011983, NC_011985 Complete 6700 6107 2 3 60 USA Aerobe Rod-shaped Mesophile gram- Free living Pairs, Singles None Host, Root nodule 25 - 28 Motile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Agrobacterium Agrobacterium vitis BACTERIAL Agrobacterium vitis S4 S4 bv III Agrobacterium vitis S4 CFBP 2660 Gc00943 Gi00021 Genome Complete and Published Public Univ of Washington NSF Nester EW gnester@u.washington.edu Avi 2009-01-27 J Bacteriology 191, 2501-11 Plant Pathogen, Agricultural 311402 13372 000692_GCAT 5431 643348505 NC_011989, NC_011988 Complete 5009 4288 2 5 57.7 USA aerial gall that developed on a two-year-old woody grapevine cane Dr. Erno Szegedi 1981 Vitis vinifera cv. 'Izsaki Sarfeher Aerobe Rod-shaped Mesophile gram- Free living Singles Crown gall Root nodule, Host Motile Pathogen Bacteria Verrucomicrobia Verrucomicrobiae Verrucomicrobiales Verrucomicrobiaceae Akkermansia Akkermansia muciniphila BACTERIAL Akkermansia muciniphila ATCC BAA-835 ATCC BAA-835 Akkermansia muciniphila ATCC BAA-835 CIP 107961, ATCC BAA-835T Gc00780 Gi00999 Genome Complete and Published Public DOE Joint Genome Institute DOE Smidt H Hauke.Smidt@wur.nl Amuc 2008-05-08 Unpublished Medical, Evolutionary 349741 20089 000693_GCAT 278234 642555104 NC_010655 Complete 2664 2238 1 0 55.8 USA Human feces Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Oval-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Intestinal microflora, Host 37 Nonmotile Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas macleodii BACTERIAL Alteromonas macleodii Deep ecotype, DSM 17117 Deep ecotype, DSM 17117 Alteromonas macleodii 'Deep ecotype' DSM 17117 No Gc00846 Gi00833 Genome Complete and Published Public Univ Miguel Hernandez, J. Craig Venter Institute Moore Foundation Rodrmguez-Valera F frvalera@umh.es http://egg.umh.es/frvalera/ MADE 2008-08-14 ISME J 2, 1194-212 Marine Microbial Initiative (MMI), Environmental 314275 13374 000695_GCAT 200456 642555105 NC_011138 Complete 4412 4128 1 0 44.9 Sanger USA Seawater obtained at 3500m depth from the Urania Basin in the Mediterranean Sea Urania Basin in the Mediterranean Sea 41.60000 17.36889 3500 meters Aerobe Rod-shaped Mesophile gram- Free living None Marine, Deep sea Motile Barophile Heterotroph Bacteria Firmicutes Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Ammonifex Ammonifex degensii BACTERIAL Ammonifex degensii KC4 KC4 DSM 10501 Yes Gi00784 Genome incomplete Public DOE Joint Genome Institute, UCLA Educational 429009 12390 000696_GCAT 13731 0 3000 0 0 USA Neutral volcanic hot spring Neutral volcanic hot spring Anaerobe Rod-shaped Thermophile gram- Free living None Fresh water, Hot spring 70 Motile Chemolithoautotroph Bacteria Bacteroidetes Candidatus Amoebophilus Candidatus Amoebophilus asiaticus BACTERIAL Candidatus Amoebophilus asiaticus 5a2 5a2 Candidatus Amoebophilus asiaticus 5a2 Gc00817 Gi01564 Genome Complete and Published Public DOE Joint Genome Institute, Univ of Vienna DOE Horn M horn@microbial-ecology.net Aasi 2008-06-09 Unpublished Biotechnological, Evolutionary, Ecological 452471 19981 000697_GCAT 267344 642555114 NC_010830 Complete 1884 1487 1 0 35 USA Rod-shaped Mesophile gram- Free living Acanthamoeba sp. None Host Symbiotic, Sulfur oxidizer Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XIV. Incertae Sedis Anaerobranca BACTERIAL Anaerobranca gottschalkii (bogoriae) AZ 13040/09 AZ 13040/09 Anaerobranca gottschalkii Gi00025 Genome incomplete Public TU Hamburg-Harburg Biotechnological 108328 13007 000698_GCAT 45167 0 0 0 0 Germany Anaerobe Rod-shaped Thermophile gram+ Free living None Soil Motile Alkalophile Heterotroph Bacteria Chloroflexi Anaerolineae Anaerolinaeles Anaerolinaceae Anaerolinea BACTERIAL Anaerolinea thermophila UNI-1 UNI-1 DSM 14523, JCM 11387, NBRC 100420 Yes Gi01299 Genome incomplete Public NITE Fujita N fujita-nobuyuki@nite.go.jp Wastewater treatment, Biotechnological 167964 000699_GCAT 44630 0 0 0 54.5 Japan Thermophilic granular sludge Thermophilic granular sludge Filament-shaped Nonsporulating Thermophile 6 - 8 Free living None Fresh water 50 - 60 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Anaplasmataceae Anaplasma Anaplasma marginale BACTERIAL Anaplasma marginale Florida Florida Anaplasma marginale str. Florida Gc00951 Gi00027 Genome Complete and Published Public Washington State Univ NSF Palmer GH gpalmer@vetmed.wsu.edu AMF 2009-02-03 BMC Genomics 11, 16 Medical, Human Pathogen, Cattle Pathogen, Animal Pathogen 320483 16369 000700_GCAT 23009 0 NC_012026 Complete Glimmer 1202 995 1 0 49 USA erythrocytes from pooled blood samples from naturally infected cattle in Florida virulent and non-tick transmitted strain USA Florida, USA Cow Blood Aerobe Coccus-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Singles Anaplasmosis, Bovine anaplasmosis Host Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micrococcaceae Arthrobacter Arthrobacter chlorophenolicus BACTERIAL Arthrobacter chlorophenolicus A6 A6 Arthrobacter chlorophenolicus A6 DSM 12829 Yes Gc00930 Gi01553 Genome Complete and Published Public DOE Joint Genome Institute DOE Jansson J janet.jansson@mibrob.slu.se Achl 2009-01-09 Unpublished Environmental, Biotechnological, Bioremediation 452863 20011 000701_GCAT 265507 643348509 NC_011886 Complete 4395 3885 1 2 65.9 USA Soil at Fort Collins Colorado USA Fort Collins Colorado 40.567095 -105.077036 Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Soil Motile Chlorophenol degrading, PAH-degrading Bacteria Cyanobacteria Oscillatoriales Arthrospira Arthrospira maxima BACTERIAL Arthrospira maxima CS-328 CS-328 Arthrospira maxima CS-328 Gi01995 Genome incomplete Public DOE Joint Genome Institute DOE Bryant DA vdab14@psu.edu Bioenergy, Biofuels, Food industry, Energy production, Dietary supplement 513049 29085 002624_GCAT 347009 642979357 NZ_ABYK00000000 Draft 6003 5690 44 USA Lake Chad in Africa Chad Lake Chad, Chad 13.330266 14.100133 Facultative Spiral-shaped Mesophile gram- Free living None Fresh water Hydrogen production Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae BACTERIAL Burkholderia UFLA 4-5-1 Amazon Amazon Gi01996 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 32008 002625_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Host, Rhizosphere-colonizing, Rhizosphere Motile Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae BACTERIAL Burkholderia UFLA 4-6-3 Amazon Amazon Gi01997 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 32008 002626_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Host, Rhizosphere-colonizing, Rhizosphere Motile Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. BACTERIAL Burkholderia sp. JV3 JV3 Gi01999 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 36773 002628_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Host, Rhizosphere-colonizing, Rhizosphere Motile Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. CCGE1001 BACTERIAL Burkholderia sp. CCGE1001 CCGE1001 Gi02000 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 640510 37717 002629_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Host, Rhizosphere-colonizing, Rhizosphere Motile Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. H160 BACTERIAL Burkholderia sp H160 H160 Burkholderia sp. H160 Gi02001 Genome Permanent Draft Public DOE Joint Genome Institute DOE Tiedje J tiedjej@msu.edu Ecological 516466 29197 002630_GCAT 348202 642979355 NZ_ABYL00000000 Complete Level 1: Standard Draft 7893 7460 62 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Host, Rhizosphere-colonizing, Rhizosphere Motile Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium carboxidivorans BACTERIAL Clostridium carboxidivorans P7, DSM 15243 P7, DSM 15243 Clostridium carboxidivorans P7 ATCC BAA-624, DSM 15243 Yes Gi02002 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 536227 33115 002631_GCAT 0 NZ_ACVI00000000 Draft 252 5592 5517 29 USA agricultural settling lagoon at Oklahoma State University USA agricultural settling lagoon at Oklahoma State University 36.123175 -97.069644 Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None 37 - 40 Motile Solvent producer, Acetogenic Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium thermocellum BACTERIAL Clostridium thermocellum JW 20, DSM 4150 JW 20, DSM 4150 Clostridium thermocellum DSM 4150 DSM 2360, ATCC 31549 No Gi02003 Genome incomplete Public DOE Joint Genome Institute DOE Hemme C hemmecl@ou.edu CtherDRAFT Biotechnological 492476 28257 002632_GCAT 642791610 NZ_ABVG00000000 Draft 3321 3021 38 USA cotton bale in Louisiana USA cotton bale in Louisiana Anaerobe Rod-shaped Sporulating Thermophile gram+ Free living Pairs, Chains, Singles None 60 Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium BACTERIAL Clostridium ultunense BST BST Gi02004 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 45497 002633_GCAT 14268 0 0 0 32 USA Mesophilic triculture Mesophilic triculture Anaerobe Rod-shaped Sporulating Thermophile 7 gram+ Syntrophic Chains, Pairs, Singles None 37 Motile Syntrophic Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Histophilus BACTERIAL Haemophilus somnus V V Gi02006 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 731 002635_GCAT 81921 0 0 0 0 USA Anaerobe Rod-shaped Sporulating Thermophile gram- Free living None Motile Syntrophic Bacteria Firmicutes Bacilli Bacillales Bacillaceae Geobacillus Geobacillus sp. G11MC16 BACTERIAL Geobacillus sp. G11MC16 G11MC16 Geobacillus sp. G11MC16 Gi02008 Genome incomplete Public DOE Joint Genome Institute DOE Mead D dmead@lucigen.com G11MC16DRAFT Biotechnological 495036 28341 002637_GCAT 330305 642791603 NZ_ABVH00000000 Draft 3545 3694 48 USA Facultative Rod-shaped Sporulating Thermophile gram+ Free living None Motile Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Bacillaceae Geobacillus Geobacillus sp. WCH70 BACTERIAL Geobacillus sp. WCH70 WCH70 Geobacillus sp. WCH70 Gc01031 Gi02009 Genome Complete and Published Public DOE Joint Genome Institute DOE Mead D dmead@lucigen.com GWCH 2009-06-11 Unpublished Biotechnological 471223 20805 002638_GCAT 641736150 NC_012793 Complete Level 6: Finished 3464 3555 1 2 42.5 USA Facultative Rod-shaped Sporulating Thermophile gram+ Free living None Motile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micrococcaceae Arthrobacter BACTERIAL Arthrobacter phenanthrenovorans Sphe3 Sphe3 Arthrobacter sp. Sphe3 Gi01675 Genome complete Public Univ of Ioannina, DOE Joint Genome Institute DOE Drainas C cdrainas@cc.uoi.gr Bioremediation, Environmental, Biotechnological 492808 20087 000702_GCAT 0 Complete 0 0 0 454, Sanger USA Creosote contaminated soil in Greece Greece Creosote contaminated soil in Greece 39.674495 20.840141 Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Soil 30 Motile PAH-degrading Bacteria Tenericutes Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma BACTERIAL Candidatus Phytoplasma australiense Candidatus Phytoplasma australiense Gc00774 Gi01475 Genome Complete and Published Public Max Planck Institute, Charles Darwin Univ Tropical Plant Protection Tran-Nguyen L lucy.tran-nguyen@cdu.edu.au PA 2008-05-01 J. Bacteriology 190, 3979-91 Plant Pathogen, Agricultural 59748 29469 000703_GCAT 316247 642555117 NC_010544 Complete 879 727 1 0 27.4 Australia diseased Chardonnay grapevines from South Australia Australia diseased Chardonnay grapevines from South Australia Aerobe Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Australian grapevine yellows Host Pathogen Bacteria Tenericutes Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma BACTERIAL Phytoplasma beet leafhopper transmitted virescence Beet leafhopper transmitted virescence phytoplasma Gi00454 Genome incomplete Public Ohio State Univ, Integrated Genomics Inc USDA Hogenhout SA http://iris.biosci.ohio-state.edu/osuent/personnel/hogenhout.html Plant Pathogen, Agricultural 37694 13618 000704_GCAT 0 0 0 0 USA Aerobe Sphere-shaped Mesophile gram- Symbiotic Parasitic Beet leafhopper-transmitted virescence Host Pathogen Bacteria Tenericutes Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Maize bushy stunt phytoplasma BACTERIAL Phytoplasma maize bushy stunt Maize bushy stunt phytoplasma Gi00455 Genome incomplete Public Ohio State Univ, Integrated Genomics Inc USDA Hogenhout SA http://iris.biosci.ohio-state.edu/osuent/personnel/hogenhout.html Plant Pathogen, Agricultural 202462 13619 000705_GCAT 112232 0 0 0 0 USA Aerobe Sphere-shaped Mesophile gram- Symbiotic Parasitic Maize bushy stunt Host Pathogen Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Atopobium BACTERIAL Atopobium minutum ATCC 33267 ATCC 33267 Atopobium minutum ATCC 33267 Gi00044 Genome incomplete Proprietary Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Biotechnological 1381 13208 000706_GCAT 11380 0 1965 1689 0 USA Perineal abscess Homo sapiens Urogenital tract Perineum Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host, Urinary tract, Abscesses, Gingival crevices Nonmotile Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Atopobium BACTERIAL Atopobium vaginae CCUG 38953, ATCC BAA-55 CCUG 38953, ATCC BAA-55 ATCC BAA-55 Yes Gi02271 Genome incomplete Public Stanford Univ Ellison Medical Foundation Hyman R rhyman@stanford.edu Medical, Lactic acid production 82135 002988_GCAT 43946 0 3-5x 0 0 44 Sanger USA Vaginal microflora from a healthy woman in Goteborg Sweden 1998 1998 Sweden Vaginal microflora from a healthy woman in Goteborg Sweden 1998 57.696981 11.986383 Homo sapiens Female Healthy Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host, Vagina microflora, Urogenital tract 37 Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus dysgalactiae BACTERIAL Streptococcus dysgalactiae dysgalactiae NADC Z-8, ATCC 27957 NADC Z-8, ATCC 27957 Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957 ATCC 27957 No Gi02272 Genome incomplete Public Cornell Univ, 454 Life Sciences Cornell Univ Stanhope MJ mjs297@cornell.edu Medical, Human Pathogen 663952 39781 002989_GCAT 62943 0 0 0 0 Sanger USA Bovine udder infection Bovine udder infection Bovine Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Mastitis Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus dysgalactiae BACTERIAL Streptococcus dysgalactiae equisimilis D166B D166B ATCC 12394 No Gi02273 Genome incomplete Public Cornell Univ, 454 Life Sciences Cornell Univ Stanhope MJ mjs297@cornell.edu Cattle Pathogen, Animal Pathogen 663954 39783 002990_GCAT 241949 0 0 0 0 Sanger USA Bovine udder infection Bovine udder infection Bovine Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Mastitis Host Nonmotile Pathogen Bacteria Chloroflexi BACTERIAL Geothermus vaporicella Gi02283 Genome incomplete Proprietary Prokaria Prokaria Prokaria http://www.prokaria.com/displayer.asp?cat_id=8 Bioremediation, Food industry, Biotechnological 189775 003005_GCAT 0 Draft 3500 1500 52 Iceland Steaming lava crack in Iceland Iceland Steaming lava crack in Iceland Anaerobe Mesophile 5.6 - 9.1 Free living None 37-72 Thermostable Heterotroph Bacteria Deinococcus-Thermus Deinococci Thermales Thermaceae Thermus BACTERIAL Thermus scotoductus Gi02284 Genome-Regions incomplete Proprietary Prokaria Prokaria Prokaria http://www.prokaria.com/displayer.asp?cat_id=8 Biotechnological 37636 003006_GCAT 1333 0 Draft 0 0 0 Iceland Hot tap water in Iceland Iceland Hot tap water in Iceland Anaerobe Thermophile Free living None Sulfur oxidizer, Iron reducer Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Rhodothermus BACTERIAL Rhodothermus marinus Gi02285 Genome incomplete Proprietary Prokaria Prokaria Prokaria http://www.prokaria.com/displayer.asp?cat_id=8 Biotechnological 29549 003007_GCAT 342465 0 0 0 0 Iceland Submarine hot springs in Iceland Iceland Submarine hot springs in Iceland Aerobe Rod-shaped Thermophile Halophile gram- Free living Singles None Fresh water, Hot spring Nonmotile Heterotroph Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Rhodospirillaceae Azospirillum BACTERIAL Azospirillum brasilense Azospirillum brasilense Gi00731 Genome incomplete Public Univ of Tennessee NSF Zhulin IB ijouline@utk.edu Biotechnological 192 13216 000707_GCAT 152743 0 0 0 0 USA Facultative Rod-shaped Mesophile gram- Free living None Rhizosphere, Soil Motile Organic fertilizer, Nitrogen fixation Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Azotobacter Azotobacter vinelandii BACTERIAL Azotobacter vinelandii DJ, ATCC BAA-1303 DJ, ATCC BAA-1303 ATCC BAA-1303 Gc01011 Gi01247 Genome Complete and Published Public Univ of Washington NSF Setubal JC setubal@vbi.vt.edu 2009-04-15 J. Bacteriology 191, 4534-45 Biotechnological, Environmental, Energy production 322710 16 000709_GCAT 257741 643692004 NC_012560 Complete Level 6: Finished 5365 5223 1 0 65 USA Aerobe Coccus-shaped Mesophile gram- Free living Pairs, Chains, Singles None Soil Motile Stores polyhydroxybutyrate, Nitrogen fixation, Carbon sequestration Lithotroph Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus BACTERIAL Bacillus alcalophilus Bacillus alcalophilus Gi00048 Genome incomplete Proprietary Genencor Genencor Biotechnological 1445 13375 000710_GCAT 14507 0 Complete 0 0 0 USA Aerobe Rod-shaped Sporulating Mesophile gram+ Free living None Alkalophile Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis A2012 (Florida isolate) A2012 (Florida isolate) Bacillus anthracis str. A2012 Gi00059 Genome incomplete Public J. Craig Venter Institute DOE Read TD http://www.tigr.org/~tread/ Bant Biothreat, Medical, Human Pathogen 191218 299 000712_GCAT 640048227 NZ_AAAC00000000 Draft 5093 5388 1 2 35 Sanger USA Patient who suffered severe inhalational anthrax in 2001 from West Palm Beach Florida 2001 USA Patient who suffered severe inhalational anthrax in 2001 from West Palm Beach Florida 26.72868 -80.099946 Homo sapiens Patient with severe inhalational anthrax Facultative Rod-shaped Sporulating Mesophile gram+ Free living Anthrax Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis Kruger B (GT87) Kruger B (GT87) Bacillus anthracis str. Kruger B Gi00054 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Read TD http://www.tigr.org/~tread/ Biothreat, Medical, Human Pathogen 205919 324 000713_GCAT 0 NZ_AAEQ00000000 Draft 11.76X 5500 0 35 USA Kruger National Park in South Africa South Africa Kruger National Park in South Africa -23.821424 31.445618 Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Anthrax Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis WesternNA USA6153 (A0071, GT3 Group A1a) WesternNA USA6153 (A0071, GT3 Group A1a) Bacillus anthracis str. Western North America USA6153 Gi00057 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Read TD http://www.tigr.org/~tread/ Biothreat, Medical, Human Pathogen 212045 337 000714_GCAT 0 NZ_AAER00000000 Draft 12.26X 5511 0 35 USA Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Anthrax Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis A1055 (Group C) A1055 (Group C) Bacillus anthracis str. A1055 Gi00050 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Human Pathogen, Medical, Biothreat 280355 10795 000715_GCAT 0 NZ_AAEO00000000 Draft 12.87X 5300 0 35.3 USA Facultative Rod-shaped Sporulating Mesophile gram+ Free living Anthrax Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis Australia 94 (GT55, Group A3a) (A0039) Australia 94 (GT55, Group A3a) (A0039) Bacillus anthracis str. Australia 94 Gi00052 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Biothreat, Medical, Human Pathogen 280477 10799 000717_GCAT 0 NZ_AAES00000000 Draft 14.51X 5500 0 35.2 USA Facultative Rod-shaped Sporulating Mesophile gram+ Free living Anthrax Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis CNEVA-9066 (GT79 Group B2) CNEVA-9066 (GT79 Group B2) Bacillus anthracis str. CNEVA-9066 Gi00053 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Biothreat, Medical, Human Pathogen 280354 10796 000718_GCAT 0 NZ_AAEN00000000 Draft 13X 5500 0 35.2 USA France France France Facultative Rod-shaped Sporulating Mesophile gram+ Free living Anthrax Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis Vollum (GT77 Group A4) Vollum (GT77 Group A4) Bacillus anthracis str. Vollum Gi00056 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Biothreat, Medical, Human Pathogen 261591 10797 000719_GCAT 0 NZ_AAEP00000000 Draft 15.68X 5500 0 35.2 USA Facultative Rod-shaped Sporulating Mesophile gram+ Free living Anthrax Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Paenibacillaceae Brevibacillus Brevibacillus brevis BACTERIAL Brevibacillus brevis NBRC 100599 NBRC 100599 NBRC 100599 Gc00981 Gi00095 Genome Complete and Published Public NITE, Tokyo Univ of Agriculture and Technology Fujita N fujita-nobuyuki@nite.go.jp BBR47 2009-04-01 Unpublished Biotechnological, Antibiotic production 358681 29147 000720_GCAT 290183 643692011 NC_012491 Complete Level 6: Finished 6296 5947 1 0 47 Japan Aerobe Rod-shaped Sporulating Mesophile gram+ Free living None Soil Motile Tyrosidine producer, Gramicidin producer Bacteria Firmicutes Bacilli Bacillales Paenibacillaceae Brevibacillus Brevibacillus sp. PNG 276 BACTERIAL Brevibacillus sp PNG 276 PNG 276 Brevibacillus sp. PNG 276 Gi01398 Genome incomplete Public Univ of British Columbia Biotechnological, Antibiotic production 365043 16295 000721_GCAT 0 0 0 0 Canada Tissues of an unidentified tube worm Tissues of an unidentified tube worm Aerobe Rod-shaped Sporulating Mesophile gram+ Free living None Soil Motile Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus G9241 G9241 Bacillus cereus G9241 Gi00034 Genome incomplete Public J. Craig Venter Institute NIH-NIAID BCE Biothreat, Medical, Human Pathogen 269801 10788 000722_GCAT 101470 638341012 NZ_AAEK00000000 Draft 12.3X 5930 6316 35.2 Sanger USA Facultative Rod-shaped Sporulating Mesophile gram+ Free living Anthrax, Food poisoning Soil 25 - 35 Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus AH187 (F4810/72) AH187 (F4810/72) Bacillus cereus AH187 Gc00897 Gi01256 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Kolsto AB a.b.kolsto@admin.uio.no BcerAH 2008-12-10 Unpublished Biothreat, Medical, Human Pathogen 405534 17715 000723_GCAT 275190 643348510 NC_011658 Complete 33-39Kb, 10-12Kb, 3-5Kb 68568 9.89X 5269 6479 1 4 35.6 USA Vomit of a person having eaten cooked rice in London UK 1972 United Kingdom Vomit of a person having eaten cooked rice in London UK 51.500152 -0.126236 Homo sapiens Gastrointestinal tract Vomit Facultative Rod-shaped Sporulating Mesophile gram+ Free living Food poisoning Soil, Host Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus AH820 AH820 Bacillus cereus AH820 Gc00917 Gi01257 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID JCVI BcerA 2008-12-19 Unpublished Biothreat, Medical, Human Pathogen 405535 17711 000724_GCAT 266807 643348511 NC_011773 Complete 33-39Kb, 10-12Kb, 3-5Kb 10.13X 5302 6457 1 3 35.4 USA "October 1995 in Akershus Norway, from the periodontal pocket of a 76 year old female patient with marginal periodontitis" October 1995 Norway October 1995 in Akershus Norway, from the periodontal pocket of a 76 year old female patient with marginal periodontitis 60.00002 11.36903 Homo sapiens Female 76 years old Patient with periodontal pocket Oral Periodontal Facultative Rod-shaped Sporulating Mesophile gram+ Free living Food poisoning Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus W W Bacillus cereus W Gi01258 Genome incomplete Public J. Craig Venter Institute NIH-NIAID BcerW Biothreat, Medical, Human Pathogen 405917 17717 000725_GCAT 264616 641736182 NZ_ABCZ00000000 Draft 12.15X 5300 5993 35.6 USA Facultative Rod-shaped Sporulating Mesophile gram+ Free living Food poisoning Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis Tsiankovskii-I Tsiankovskii-I Bacillus anthracis Tsiankovskii-I Gi01379 Genome incomplete Public J. Craig Venter Institute NIH-NIAID BantT Biothreat, Medical, Human Pathogen 405536 17709 000726_GCAT 266240 641736138 NZ_ABDN00000000 Draft 11.4x 5500 6301 0 USA Facultative Rod-shaped Sporulating Mesophile gram+ Free living Anthrax Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus Q1 Q1 Bacillus cereus Q1 Gc00895 Gi01380 Genome Complete and Published Public Microbial Genome Center of ChMPH Jin Q zdsys@vip.sina.com BCQ 2009-01-23 J Bacteriology 191, 1120-1121 Medical 361100 16220 000727_GCAT 643348514 NC_011969 Complete 5214 5205 1 2 35 China deep-subsurface oil reservoir in Daqing oilfield, Northeastern China China deep-subsurface oil reservoir in Daqing oilfield, Northeastern China 46.59019 125.104637 Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains None Soil, Oil fields Motile Non-Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus NVH0597-99 NVH0597-99 Bacillus cereus NVH0597-99 Gi01381 Genome incomplete Public J. Craig Venter Institute NIH-NIAID BcerN Biothreat, Medical, Human Pathogen 451707 19955 000728_GCAT 264201 641736141 NZ_ABDK00000000 Draft 11.15X 5400 6097 0 Sanger USA Spice mix in 1999 1999 Spice mix in 1999 Facultative Rod-shaped Sporulating Mesophile gram+ Free living Food poisoning Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus H3081.97 H3081.97 MLST type 144 Bacillus cereus H3081.97 Gi01382 Genome incomplete Public J. Craig Venter Institute NIH-NIAID BcerH Biothreat, Medical, Human Pathogen 451708 19957 000729_GCAT 349779 641736136 NZ_ABDL00000000 Draft 10.86X 5600 6187 0 Sanger USA Emetic strain Emetic strain Facultative Rod-shaped Sporulating Mesophile gram+ Free living Food poisoning Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus AH1134 AH1134 Bacillus cereus AH1134 Gi01383 Genome incomplete Public J. Craig Venter Institute NIH-NIAID BcerAH Biothreat, Medical, Human Pathogen 405533 17719 000730_GCAT 261921 641736134 NZ_ABDA00000000 Draft 9.53X 5700 6329 0 USA Pediatric endophthalmitis case at Dean McGee Eye Institute in Oklahoma City USA Pediatric endophthalmitis case at Dean McGee Eye Institute in Oklahoma City 35.493138 -97.45914 Homo sapiens Child Patient with endophthalmitis Eye Facultative Rod-shaped Sporulating Mesophile gram+ Free living Endophthalmitis, Food poisoning Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus G9842 G9842 Bacillus cereus G9842 Gc00914 Gi01384 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Hoffmaster A amh9@cdc.gov BcerG 2008-12-19 Unpublished Biothreat, Medical, Human Pathogen 405531 17733 000731_GCAT 264486 643348513 NC_011772 Complete 33-39Kb, 10-12Kb, 3-5Kb 10.11X 5387 6279 1 2 35.3 USA Stool samples from an outbreak that involved three individuals in Nebraska in 1996 1996 USA Stool samples from an outbreak that involved three individuals in Nebraska in 1996 Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus B4264 (2002734361) B4264 (2002734361) Bacillus cereus B4264 Gc00903 Gi01385 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Hoffmaster A amh9@cdc.gov BcerB 2008-12-17 Unpublished Biothreat, Medical, Human Pathogen 405532 17731 000732_GCAT 264447 643348512 NC_011725 Complete 33-39Kb, 10-12Kb, 3-5Kb 11.69X 5419 5805 1 0 35 USA 1969 from a case of fatal pneumonia in a male patient cultured from the blood and the pleural fluid. 1969 1969 from a case of fatal pneumonia in a male patient Homo sapiens Male Patient with fatal pneumonia Blood Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains Pneumonia Soil, Host 37 Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus 03BB108 03BB108 Bacillus cereus 03BB108 Gi01386 Genome incomplete Public J. Craig Venter Institute NIH-NIAID JCVI Bcer Biothreat, Medical, Human Pathogen 451709 19959 000733_GCAT 259987 641736135 NZ_ABDM00000000 Draft 9.63X 5900 6685 0 Sanger USA Same dust as the pneumonia-causing strain B. cereus Same dust as the pneumonia-causing strain B. cereus Facultative Rod-shaped Sporulating Mesophile gram+ Free living Pneumonia Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus weihenstephanensis BACTERIAL Bacillus weihenstephanensis KBAB4 KBAB4 Bacillus weihenstephanensis KBAB4 Gc00702 Gi00791 Genome Complete and Published Public INRA, DOE Joint Genome Institute DOE Sorokin A sorokine@jouy.inra.fr BcerKBAB4 2007-12-21 Unpublished Medical 315730 13623 000734_GCAT 247367 641228477 NC_010184 Complete 11x 5262 6133 1 4 35.4 Sanger USA Facultative Rod-shaped Sporulating Psychrotolerant gram+ Free living None Soil Motile Non-Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus F0837/76 F0837/76 Bacillus cereus F837/76 Gi01000 Genome incomplete Public INRA, Genoscope Sorokin A sorokine@jouy.inra.fr Medical, Human Pathogen 347495 15716 000736_GCAT 0 0 0 0 France Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Soil 25 - 35 Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus BACTERIAL Bacillus clausii. Gi00061 Genome incomplete Proprietary QIAGEN, AGOWA Genencor Biotechnological 79880 000737_GCAT 276331 0 4300 0 44.8 International Mesophile gram+ Free living None Probiotic, Protease production, Alkalitolerant Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus coagulans BACTERIAL Bacillus coagulans 36D1 36D1 Bacillus coagulans 36D1 Gi01001 Genome Permanent Draft Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org BcoaDRAFT Bioenergy, Biofuels, Medical, Food industry, Biotechnological 345219 15679 000738_GCAT 207475 640196208 NZ_AAWV00000000 Complete Level 1: Standard Draft 9.5x 2941 2790 46 Sanger USA Intestinal tract Facultative Rod-shaped Sporulating Thermophile gram+ Free living None Intestinal microflora, Host 55 Motile Acidophile Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus BACTERIAL Bacillus megaterium MS941 MS941 Gi01156 Genome incomplete Public Technical Univ Braunschweig, GATC Biotech Sun J jsu@gbf.de Agricultural, Vitamin production, Biotechnological 1404 000739_GCAT 163399 0 0 0 46 Germany Facultative Rod-shaped Sporulating Mesophile gram+ Free living None Soil Motile Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus megaterium BACTERIAL Bacillus megaterium QM B1551 QM B1551 Bacillus megaterium QM B1551 ATCC12872 No Gi01242 Genome incomplete Public J. Craig Venter Institute NSF Ravel J http://www.tigr.org/faculty/Ravel_Jacques/index.shtml Agricultural, Vitamin production, Biotechnological 545693 30165 000740_GCAT 81504 0 0 0 0 USA "Pioneering Research Division, Quartermaster and Engineering Center, Natick, MA" isolated by Hillel Levinson USA Pioneering Research Division, Quartermaster and Engineering Center, Natick, MA 42.283783 -71.347275 Aerobe Rod-shaped Sporulating Mesophile gram+ Free living None Soil Motile Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus BACTERIAL Bacillus pumilus F036B F036B Bacillus pumilus Gi01901 Genome incomplete Public BCM-HGSC NSF Highlander, SK sarahh@bcm.tmc.edu Medical 1408 13482 002534_GCAT 155131 0 15.5x 0 0 0 USA Aerobe Rod-shaped Sporulating Mesophile gram+ Free living None Soil Motile Radiation resistant, Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus BACTERIAL Bacillus anthracis 31-101 31-101 Gi01834 Genome incomplete Public BCM-HGSC NSF Petrosino J jpetrosi@bcm.tmc.edu Medical 1392 000742_GCAT 74110 0 9.4x 5000 0 0 USA Aerobe Rod-shaped Sporulating Mesophile gram+ Free living None Soil Motile Radiation resistant, Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus BACTERIAL Bacillus anthracis 500 500 Gi01835 Genome incomplete Public BCM-HGSC NSF Petrosino J jpetrosi@bcm.tmc.edu Medical 1392 000743_GCAT 74110 0 7.6x 5000 0 0 USA Aerobe Rod-shaped Sporulating Mesophile gram+ Free living None Soil Motile Radiation resistant, Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. BACTERIAL Burkholderia sp SRMrh-20 SRMrh-20 Gi01836 Genome incomplete Public BCM-HGSC NSF Weinstock G gweinsto@watson.wustl.edu Agricultural 36773 000744_GCAT 101850 0 7000 0 0 USA Mexico Mexico Mexico Mesophile gram- Free living None Host Nitrogen fixation Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia tuberum BACTERIAL Burkholderia tuberum STM-678T STM-678T Burkholderia tuberum STM678 LMG 21444, CIP 108238 Gi01837 Genome incomplete Public BCM-HGSC NSF Weinstock G gweinsto@watson.wustl.edu Agricultural 491071 30619 000745_GCAT 0 7000 0 0 USA South Africa South Africa South Africa Aerobe Rod-shaped Mesophile gram- Free living None Plant root, Host Motile Nitrogen fixation Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. PVA5 BACTERIAL Burkholderia sp PVA5 PVA5 Burkholderia sp. PVA5 Gi01838 Genome incomplete Public BCM-HGSC NSF Weinstock G gweinsto@watson.wustl.edu Plant Pathogen, Agricultural 491073 30617 000746_GCAT 0 13x 7000 0 0 USA Brazil Brazil Brazil Aerobe Rod-shaped Mesophile gram- Free living Plant root, Host Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia unamae BACTERIAL Burkholderia unamae MTI-641 MTI-641 Burkholderia unamae MTI-641 ATCC BAA-744T, CIP 107921 Gi01839 Genome incomplete Public BCM-HGSC NSF Weinstock G gweinsto@watson.wustl.edu Agricultural 491072 30621 000747_GCAT 0 7000 0 0 USA "rhizosphere of maize in Tlayacapan, Morelos, Mexico" Mexico rhizosphere of maize in Tlayacapan, Morelos, Mexico 18.681305 -99.10135 Aerobe Rod-shaped Mesophile 4.5 - 7.1 gram- Free living None Rhizosphere, Host Motile Nitrogen fixation Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Anaplasmataceae Ehrlichia BACTERIAL Ehrlichia muris Gi01840 Genome incomplete Public BCM-HGSC NSF Weinstock G gweinsto@watson.wustl.edu Animal Pathogen, Mouse Pathogen, Medical 35795 000748_GCAT 6030 0 0 0 0 USA Rod-shaped Mesophile gram- Free living Endosymbiotic intracellular Parasitic Unknown Host Pathogen Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis HH22 HH22 Enterococcus faecalis HH22 BEI Contacted Unknown Gi01841 Genome incomplete Public BCM-HGSC NIH-NIAID BCM-HGSC hmpstrains@bcm.edu Human Microbiome Project (HMP), Medical, Human Pathogen 491075 31457 SRS000267 000749_GCAT 346 HOMD: tax_604 643886073 ACIX00000000, NZ_ACIX00000000 Complete 401026 Newbler/2.0.00.22 37X 307 3049 3281 37 454-FLX, Illumina USA urinary tract infection urinary tract infection Homo sapiens Patient with urinary tract infection Urogenital tract Urine Urinary tract Facultative Coccus-shaped Mesophile gram+ Free living Urinary infection, Endocarditis, Bacteremia Host, Wastewater, Intestinal microflora Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis OG1RF OG1RF Enterococcus faecalis OG1RF ATCC 47077 Gc00831 Gi01842 Genome Complete and Published Public BCM-HGSC NIH-NIAID Highlander, SK sarahh@bcm.tmc.edu OG1RF 2008-07-08 Genome Biology 9, R110 Comparative analysis, Medical, Human Pathogen 474186 20843 000750_GCAT 642791607 NZ_ABPI00000000 Complete Atlas 28x 454, 104x Solexa, 4.5x Sanger Glimmer, GeneMark 2739 214 1 0 37.8 454, Solexa, Sanger USA derivative of strain OG1 Selected in vitro for its spontaneous resistance to rifampicin and fusidic acid. Homo sapiens Gastrointestinal tract Facultative Mesophile gram+ Free living Urinary infection, Bacteremia, Endocarditis Wastewater, Intestinal microflora, Host Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis TX0104 TX0104 Enterococcus faecalis TX0104 BEI Contacted Unknown Gi01843 Genome incomplete Public BCM-HGSC NIH-NIAID BCM-HGSC hmpstrains@bcm.edu Human Microbiome Project (HMP), Medical, Human Pathogen 491074 30623 SRS000268 000751_GCAT 348 HOMD: tax_604 643886065 NZ_ACGL00000000, ACGL00000000 Complete 771407 Newbler/1.1.03.24 26X 300 3106 3327 37 454-FLX USA endocarditis strain Homo sapiens Gastrointestinal tract Aerobe Mesophile gram+ Free living Urinary infection, Endocarditis, Bacteremia Intestinal microflora, Host, Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus pumilus BACTERIAL Bacillus pumilus SAFR-032 SAFR-032 Bacillus pumilus SAFR-032 Gi00674 Genome incomplete Public Jet Propulsion Laboratory Venkateswaran K kjvenkat@jpl.nasa.gov Medical 315750 13626 000752_GCAT 251227 0 0 0 0 USA Aerobe Rod-shaped Sporulating Mesophile gram+ Free living None Soil Motile Pathogen, Radiation resistant Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus selenitireducens BACTERIAL Bacillus selenitireducens MLS-10 MLS-10 Bacillus selenitireducens MLS10 ATCC 700615 Yes Gi00921 Genome incomplete Public DOE Joint Genome Institute DOE Stolz J stolz@mailbox.cr.duq.edu BselDRAFT Biotechnological 439292 13376 000753_GCAT 250140 641380445 NZ_ABHZ00000000 Draft 3593 3500 48 USA Anoxic muds of Mono Lake California USA Anoxic muds of Mono Lake California 37.986853 -119.045711 Facultative Rod-shaped Nonsporulating Mesophile Halophile gram+ Free living None Fresh water Nonmotile Arsenic metabolizer, Alkalophile, Respiratory arsenate reductase Bacteria Firmicutes Bacilli Bacillales Bacillaceae Geobacillus Geobacillus stearothermophilus BACTERIAL Bacillus stearothermophilus 10 10 Geobacillus stearothermophilus 10 Gi00063 Genome incomplete Public Univ of Oklahoma NSF Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Biotechnological 272567 75 000754_GCAT 0 4250 0 0 USA Hot spring in Yellowstone National Park USA Hot spring in Yellowstone National Park 44.376262 -110.690383 Facultative Rod-shaped Sporulating Thermophile gram+ Free living None Fresh water, Hot spring Motile Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus sp. NRRL B-14911 BACTERIAL Bacillus sp NRRL B-14911 NRRL B-14911 Bacillus sp. NRRL B-14911 NRRL B-14911 Gi00834 Genome incomplete Public Rice Univ, J. Craig Venter Institute Moore Foundation Siefert J http://www.stat.rice.edu/~siefert/ B14911 Marine Microbial Initiative (MMI), Environmental 313627 13545 000755_GCAT 156268 638341014 NZ_AAOX00000000 Draft 5072 5869 45.7 Sanger USA 10 meters depth in the Gulf of Mexico Mexico 10 meters depth in the Gulf of Mexico 26.35000 -84.50000 10 meters Rod-shaped Sporulating Mesophile gram+ Free living None Marine Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus BACTERIAL Bacillus mojavensis RO-H-1 RO-H-1 NRRL B-14698 Gi01243 Genome incomplete Public J. Craig Venter Institute NSF Ravel J http://www.tigr.org/faculty/Ravel_Jacques/index.shtml Biocontrol, Agricultural 72360 000756_GCAT 251949 0 0 0 0 USA Mesophile gram+ Free living None Soil, Endophyte Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus BACTERIAL Bacillus subtilis RO-NN-1 (168 group) RO-NN-1 (168 group) Gi01244 Genome incomplete Public J. Craig Venter Institute NSF Ravel J http://www.tigr.org/faculty/Ravel_Jacques/index.shtml Biotechnological 1423 000757_GCAT 312706 0 0 0 0 USA Environmental isolate Environmental isolate Facultative Rod-shaped Sporulating Mesophile gram+ Free living None Soil Motile Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus subtilis BACTERIAL Bacillus subtilis NCIB3610 NCIB3610 NCIB3610 Gi01245 Genome incomplete Public J. Craig Venter Institute NSF Ravel J http://www.tigr.org/faculty/Ravel_Jacques/index.shtml Biotechnological 535026 000758_GCAT 312706 0 0 0 0 USA Facultative Rod-shaped Sporulating Mesophile gram+ Free living None Soil Motile Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus BACTERIAL Bacillus subtilis TU-B-10 (W23 group) TU-B-10 (W23 group) Gi01246 Genome incomplete Public J. Craig Venter Institute NSF Ravel J http://www.tigr.org/faculty/Ravel_Jacques/index.shtml Biotechnological 1423 000759_GCAT 312706 0 0 0 0 USA Facultative Rod-shaped Sporulating Mesophile gram+ Free living None Soil Motile Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis BACTERIAL Bacillus thuringiensis ATCC 35646 ATCC 35646 israelensis Bacillus thuringiensis serovar israelensis ATCC 35646 ATCC 35646 Gi00065 Genome complete Public Integrated Genomics Inc DARPA Kapatral V Vinayak@integratedgenomics.com RBTH Agricultural, Insect Pathogen, Biotechnological 339854 15522 000760_GCAT 139039 638341015 NZ_AAJM00000000 Draft 5880 6233 35 Sanger USA Facultative Rod-shaped Sporulating Mesophile gram+ Free living Sotto disease Host, Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus BACTERIAL Bacillus thuringiensis NBT97 NBT97 Gi00064 Genome incomplete Public DOE Joint Genome Institute DOE Gilna P pgil@lanl.gov Agricultural, Insect Pathogen, Biotechnological 1428 13483 000761_GCAT 246910 0 0 0 0 USA Facultative Rod-shaped Sporulating Mesophile gram+ Free living Soil, Host Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis BACTERIAL Bacillus thuringiensis kurstaki kurstaki Gi00759 Genome incomplete Public Univ of Oklahoma, Univ of Texas, Dallas NSF Bulla L bulla@utdallas.edu Agricultural, Insect Pathogen, Biotechnological 29339 000762_GCAT 255857 0 0 0 0 USA Facultative Sporulating Mesophile gram+ Free living Plant surface, Soil Motile Pathogen Bacteria Proteobacteria Deltaproteobacteria Bdellovibrionales Bacteriovoracaceae Bacteriovorax BACTERIAL Bacteriovorax marinus SJ SJ Bacteriovorax marinus Gi00066 Genome incomplete Public Sanger Institute, Univ of Maryland, Morgan State Univ Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Biotechnological 97084 12622 000763_GCAT 106487 0 Complete 2600 0 36.75 International Water sample from Saint John's Island in the Caribbean Water sample from Saint John's Island in the Caribbean Mesophile gram- Free living Parasitic None Fresh water, Host Motile Parasite Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Tannerella Tannerella forsythia BACTERIAL Tannerella forsythensis ATCC 43037 ATCC 43037 Tannerella forsythia ATCC 43037 ATCC 43037 Yes Gi00646 Genome incomplete Public J. Craig Venter Institute Dental Pathogen, Medical, Human Pathogen 203275 319 000764_GCAT 0 0 0 0 USA human periodontal pocket, Massachusetts Homo sapiens Oral Periodontal Anaerobe Rod-shaped Mesophile gram- Symbiotic Periodontal infection Oral microflora, Host 37 Nonmotile Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides BACTERIAL Bacteroides thetaiotaomicron 7330 7330 Gi01387 Genome incomplete Public Washington Univ NSF Gordon JI jgordon@molecool.wustl.edu Medical 818 000766_GCAT 111709 0 0 0 0 USA Homo sapiens Gastrointestinal tract Intestinal tract Obligate anaerobe Mesophile gram- Free living Peritonitis Intestinal microflora, Host Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides BACTERIAL Bacteroides thetaiotaomicron 3731 3731 Gi01388 Genome incomplete Public Washington Univ NSF Gordon JI jgordon@molecool.wustl.edu Medical 818 000767_GCAT 111421 0 0 0 0 USA Homo sapiens Gastrointestinal tract Intestinal tract Obligate anaerobe Mesophile gram- Free living Peritonitis Intestinal microflora, Host Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. WH2 BACTERIAL Bacteroides sp. WH2 WH2 Gi01389 Genome incomplete Public Washington Univ NSF Gordon JI jgordon@molecool.wustl.edu Medical 311784 000768_GCAT 112392 0 0 0 0 USA Homo sapiens Gastrointestinal tract Intestinal tract Obligate anaerobe Mesophile gram- Free living Peritonitis Intestinal microflora, Host Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides BACTERIAL Bacteroides fragilis 638R 638R Gi00069 Genome incomplete Public Sanger Institute Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Animal Pathogen, Medical, Human Pathogen 817 000769_GCAT 350724 0 Complete 5200 0 44 United Kingdom Homo sapiens Gastrointestinal tract Intestinal tract Obligate anaerobe Rod-shaped Mesophile gram- Free living Diarrhea, Abscesses Intestinal microflora, Host Pathogen Chemoorganotroph Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides BACTERIAL Bacteroides fragilis Gi00068 Genome incomplete Proprietary Genome Therapeutics Animal Pathogen, Medical, Human Pathogen 817 000770_GCAT 350724 0 Complete 0 0 44 USA Homo sapiens Gastrointestinal tract Intestinal tract Obligate anaerobe Mesophile gram- Free living Diarrhea, Abscesses Intestinal microflora, Host Pathogen Chemoorganotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bartonellaceae Bartonella BACTERIAL Bartonella bacilliformis Bartonella bacilliformis Gi00073 Genome incomplete Public Univ of Uppsala, Univ of Montana Andersson S http://web1.ebc.uu.se/molev/staff/siv.html Medical, Human Pathogen 774 13486 000772_GCAT 5472 0 0 0 0 International Blood Aerobe Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Oroya fever, Carrion's disease Blood, Host Motile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bartonellaceae Bartonella Bartonella tribocorum BACTERIAL Bartonella tribocorum CIP 105476 CIP 105476 Bartonella tribocorum CIP 105476 CCUG 45778, CIP 105476 Yes Gc00700 Gi01157 Genome Complete and Published Public Max Planck Institute Schuster SC scs@bx.psu.edu http://www.eb.tuebingen.mpg.de/schuster/staff_schuster.htm 2007-11-25 Nat. Genetics 39, 1469-1476 Rat Pathogen, Medical 382640 28109 000773_GCAT 641228478 NC_010161 Complete 2619 2169 1 1 0 International Blood of two wild rats, France France Blood of two wild rats Rat Blood Aerobe Rod-shaped Nonsporulating Mesophile gram- Bartonellosis Host Motile Pathogen Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium breve BACTERIAL Bifidobacterium breve UCC2003 (NCIMB8807) UCC2003 (NCIMB8807) Bifidobacterium breve UCC2003 Gi00078 Genome incomplete Public Univ College Cork Higgins DG http://bioinf.ucd.ie/people/higgins.html Food industry, Biotechnological 326426 13487 000774_GCAT 0 0 0 60 Ireland Infant nursing stool Infant nursing stool Homo sapiens Infant Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Intestinal microflora, Host Nonmotile Probiotic, Non-Pathogen Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium animalis BACTERIAL Bifidobacterium animalis lactis BB12 BB12 Bifidobacterium animalis subsp. lactis BB12 Gi01876 Genome incomplete Proprietary Chr. Hansen, Integrated Genomics Inc Pedersen MB MartinB.Pedersen@dk.chr-hansen.com Food industry, Biotechnological 552531 30585 000775_GCAT 0 Complete 0 0 0 Denmark obtained from Chr. Hansen obtained from Chr. Hansen Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Intestinal microflora, Host Nonmotile Probiotic, Non-Pathogen Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum BACTERIAL Bifidobacterium longum DJO10A DJO10A Bifidobacterium longum DJO10A Gc00811 Gi00079 Genome Complete and Published Public Univ of Minnesota, DOE Joint Genome Institute DOE O'Sullivan D dosulliv@umn.edu http://www.fsci.umn.edu/Dan_OSullivan/djo.html 2008-06-05 BMC Genomics 9, 247 Food industry, Biotechnological 205913 18773 000776_GCAT 325853 642555107 NC_010816 Complete Phred/Phrap/Consed 9.2x Glimmer, GeneMark, GAMOLA 2375 2074 1 2 59.1 Sanger USA Healthy young adult's fece Healthy young adult's fece Homo sapiens Adult Healthy Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs, Singles None Intestinal microflora, Host 37 - 41 Nonmotile Probiotic, Non-Pathogen Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum BACTERIAL Bifidobacterium longum infantis ATCC 15697 ATCC 15697 Infantis Bifidobacterium longum subsp. infantis ATCC 15697 ATCC 15697 Yes Gc00886 Gi01539 Genome Complete and Published Public DOE Joint Genome Institute DOE Mills D damills@ucdavis.edu 2008-11-20 PNAS 105, 18964-9 Food industry, Biotechnological 391904 17189 000777_GCAT 643348516 NC_011593 Complete 2832 2416 1 0 59 USA Human infant feces Homo sapiens Infant Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Clusters, Pairs, Singles None Host, Human fecal, Intestinal microflora Nonmotile Probiotic, Non-Pathogen Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium dentium BACTERIAL Bifidobacterium dentium Bd1 Bd1 Bifidobacterium dentium Bd1 Gi01668 Genome incomplete Public Univ of Parma Ventura, M marco.ventura@unipr.it Food industry, Biotechnological 401473 17583 000778_GCAT 0 0 0 0 Italy Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host Nonmotile Probiotic, Non-Pathogen Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium dentium BACTERIAL Bifidobacterium dentium ATCC 27678 ATCC 27678 Bifidobacterium dentium ATCC 27678 ATCC 27678 No Gi02447 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi BIFDEN Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 473819 20555 SRS000021 003181_GCAT 167 641736189 ABIX00000000, NZ_ABIX00000000 Draft 41276 PCAP 9.9x GeneMark v3.3, Glimmer2 v2.13 8 2624 2500 58 454-GS20, Sanger USA Human feces ATCC 27678 Human feces Homo sapiens Healthy Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host, Human fecal, Human intestinal microflora Nonmotile Probiotic, Non-Pathogen Bacteria Proteobacteria Deltaproteobacteria Bdellovibrionales Bdellovibrionaceae Bdellovibrio BACTERIAL Bdellovibrio bacteriovorus W W Gi00077 Genome incomplete Public Univ of Oklahoma NSF Iandolo JJ john-iandolo@ouhsc.edu Biotechnological, Pathogen in Bacteria, Medical 959 000779_GCAT 338113 0 2100 0 0 USA Intestinal tract Aerobe Curved-shaped Nonsporulating Mesophile gram- Free living None Intestinal microflora, Host Motile Predatory Bacteria Planctomycetes Planctomycetacia Planctomycetales Planctomycetaceae Blastopirellula Blastopirellula marina BACTERIAL Blastopirellula marina SH 106T, DSM 3645 SH 106T, DSM 3645 Blastopirellula marina DSM 3645 ATCC 49069T, DSM 3645T Yes Gi00835 Genome incomplete Public Max Planck Institute, J. Craig Venter Institute Moore Foundation Gloeckner FO http://www.mpi-bremen.de/en/Microbial_Genomics_Group.html DSM Marine Microbial Initiative (MMI), Environmental 314230 13488 000780_GCAT 2808 638341020 NZ_AANZ00000000 Draft 6655 6132 57 Sanger USA Surface waters of Kiel Fjord in the Baltic Sea Germany Surface waters of Kiel Fjord in the Baltic Sea 54.40000 10.20000 Surface Mesophile gram- Free living None Marine, Surface water Bacteria Bacteroidetes Flavobacteria Flavobacteriales Blattabacteriaceae Blattabacterium Blattabacterium sp. (Blattella germanica) BACTERIAL Blattabacterium sp. Gi01158 Genome incomplete Public Univ of Valencia Neef A alexander.neef@uv.es Pest control, Biotechnological 331104 31103 000781_GCAT 139899 0 650 0 0 Spain "fat body of female adults of the German cockroach, Blattella germanica" fat body of female adults of the German cockroach, Blattella germanica Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Blattella germanica 6973 Singles None Insect endosymbiont, Host Nonmotile Bacteria Proteobacteria Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella petrii BACTERIAL Bordetella petrii Se-1111R, DSM 12804 Se-1111R, DSM 12804 Bordetella petrii DSM 12804 CCUG 43448T, DSM 12804T Yes Gc00697 Gi00083 Genome Complete and Published Public Univ of Wuerzburg, Bielefeld Univ GBF Gross R roy@biozentrum.uni-wuerzburg.de 2007-12-18 Unpublished Medical 340100 28135 000782_GCAT 21781 641228479 NC_010170 Complete 5287 5101 1 0 65 Germany Anaerobic dechlorinating bioreactor culture enriched from river sediment Anaerobic dechlorinating bioreactor culture enriched from river sediment Anaerobe Mesophile gram- Free living None Fresh water Nonmotile Selenate reducer, Selenate reducer, Pathogen Heterotroph Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi JD1 JD1 Borrelia burgdorferi JD1 Gi00786 Genome incomplete Public Stony Brook Univ, J. Craig Venter Institute, City Univ of NY NIH Qiu W-G weigang@genectr.hunter.cuny.edu Medical, Human Pathogen 521008 29359 000783_GCAT 0 0 0 0 USA "Nymphal deer tick, Ixodes scapularis, in Ipswich, Massachusetts" USA Nymphal deer tick, Ixodes scapularis, in Ipswich, Massachusetts 42.682684 -70.832826 Microaerophilic Spiral-shaped Mesophile gram- Ixodes scapularis Tick-borne relapsing fever, Lyme disease Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi N40 N40 Borrelia burgdorferi N40 Gi00787 Genome incomplete Public Stony Brook Univ, City Univ of NY, J. Craig Venter Institute NIH Qiu W-G weigang@genectr.hunter.cuny.edu Medical, Human Pathogen 521007 29357 000784_GCAT 0 0 0 0 USA "Adult deer tick, Ixodes dammini, in New York" USA New York 40.756054 -73.986951 Microaerophilic Spiral-shaped Mesophile gram- Ixodes dammini Tick-borne relapsing fever, Lyme disease Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia hermsii BACTERIAL Borrelia hermsii DAH DAH Borrelia hermsii DAH Gc00792 Gi00085 Genome Complete and Published Public RML-NIAID NIH-NIAID BH 2008-05-08 Unpublished Medical, Human Pathogen 314723 29637 000785_GCAT 139596 642555108 NC_010673 Complete 922 853 1 0 29.8 USA Aerobe Spiral-shaped Mesophile gram- Free living Tick-borne relapsing fever Host Motile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bradyrhizobiaceae Bradyrhizobium Bradyrhizobium japonicum BACTERIAL Bradyrhizobium japonicum USDA 110 USDA 110 Gi00090 Genome incomplete Proprietary Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Agricultural 224911 000786_GCAT 4937 0 10231 14192 0 USA Soybean nodule in 1957 in Florida USA 1957 USA Soybean nodule in 1957 in Florida USA Aerobe Rod-shaped Mesophile gram- Symbiotic Mutualistic Soybeans None Soil Motile Stores polyhydroxybutyrate, Nitrogen fixation Photosynthetic Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bradyrhizobiaceae Bradyrhizobium BACTERIAL Bradyrhizobium japonicum Gi00089 Genome incomplete Public Clemson Univ Clemson Univ CUGI jtmkns@clemson.edu Agricultural 375 000787_GCAT 136045 0 0 0 0 USA Aerobe Rod-shaped Mesophile gram- Symbiotic Mutualistic None Host Motile Stores polyhydroxybutyrate, Nitrogen fixation Photosynthetic Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Brevibacteriaceae Brevibacterium Brevibacterium linens BACTERIAL Brevibacterium linens BL2 BL2 Brevibacterium linens BL2 ATCC 9174 Gi00096 Genome incomplete Public DOE Joint Genome Institute, Utah State Univ DOE Weimer B milkbugs@cc.usu.edu BlinB Biotechnological, Wastewater treatment, Vitamin production, Insecticides degrader 321955 405 000790_GCAT 114941 638341022 NZ_AAGP00000000 Draft 4366 3833 62.8 Sanger USA Aerobe Rod-shaped Nonsporulating Mesophile Halotolerant 5.5 - 9.5 gram+ Free living None Food, Human skin, Soil 20 - 30 Nonmotile Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella melitensis BACTERIAL Brucella melitensis 16M 16M Gi00100 Genome incomplete Public Univ Notre-Dame De La Paix de Bolle X http://www.fundp.ac.be/recherche/personnes/fr/01003147.html Animal Pathogen, Medical, Human Pathogen, Biothreat 224914 000791_GCAT 136366 0 0 0 0 France Infected goat Infected goat Aerobe Nonsporulating Mesophile gram- Free living Brucellosis Host Nonmotile Pathogen, Facultative intracellular Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella canis BACTERIAL Brucella canis ATCC 23365 ATCC 23365 Brucella canis ATCC 23365 ATCC 23365 Gc00686 Gi02286 Genome Complete and Published Public DOE Joint Genome Institute Brettin, T brettin@lanl.gov BCAN 2007-11-29 Unpublished Animal Pathogen, Biothreat, Medical 483179 20243 003008_GCAT 255885 641228480 NC_010103, NC_010104 Complete 3 kb, 8 kb 10x 3300 3417 2 0 57.2 USA Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Canine brucellosis Host Nonmotile Pathogen, Facultative intracellular Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella abortus BACTERIAL Brucella abortus S19 S19 Brucella abortus S19 Gc00790 Gi01919 Genome Complete and Published Public Virginia Bioinformatics Institute Crasta OR ocrasta@vbi.vt.edu BAbS19 2008-05-22 PLoS ONE 3, e2193 Biothreat, Medical, Mammal Pathogen, Human Pathogen 430066 18999 002543_GCAT 290517 642555110 NC_010742, NC_010740 Complete 20x Glimmer 3284 3066 2 0 57 454, Sanger USA Milk of American Jersey Cattle by Dr. John Buck in 1923 1923 USA Milk of American Jersey Cattle by Dr. John Buck in 1923 Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Spontaneous abortion Host 37 Nonmotile Pathogen, Intracellular pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella suis BACTERIAL Brucella suis ATCC 23445 ATCC 23445 Brucella suis ATCC 23445 ATCC 23445 Gc00699 Gi02357 Genome Complete and Published Public Los Alamos National Laboratory, DOE Joint Genome Institute Brettin T brettin@lanl.gov BSUIS 2007-12-20 Unpublished Biothreat, Medical, Mammal Pathogen, Human Pathogen 470137 20371 003085_GCAT 246981 641228481 NC_010169, NC_010167 Complete 3 Kb, 8 Kb 10x 3323 3428 2 0 57 Sanger USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs, Chains Infectious abortions, Brucellosis, Fever Host 37 Nonmotile Pathogen, Intracellular pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cenocepacia BACTERIAL Burkholderia cenocepacia J2315 J2315 genomovar III Burkholderia cenocepacia J2315 CCM 4899, DSM 16553, BCRC 17448, CIP 108255, ATCC BAA-245, CF5610, CCRC 17448, CCUG 48434, CBMAI 625 Yes Gc00890 Gi00104 Genome Complete and Published Public Sanger Institute Beowulf Genomics Holden MTG mh3@sanger.ac.uk. 2008-10-23 J Bacteriology 191, 261-77 Medical, Human Pathogen 216591 339 000793_GCAT 309674 643348523 NC_011001, NC_011002, NC_011000 Complete 8060 7023 3 1 67 United Kingdom Patient with cystic fibrosis in Edinburgh, UK representative of the ET12 epidemic lineage 1989 United Kingdom 55.950176 -3.187536 Homo sapiens Patient with cystic fibrosis Aerobe Rod-shaped Mesophile gram- Free living Chronic infection, Necrotizing Pneumonia Host Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cenocepacia BACTERIAL Burkholderia cenocepacia PC184 PC184 Burkholderia cenocepacia PC184 Gi01177 Genome incomplete Public Broad Institute NIH-NIAID MCS msc@broad.mit.edu BcenP Agricultural, Plant Pathogen, Medical, Human Pathogen 350702 16169 000795_GCAT 638341024 NZ_AAKX00000000 Draft 9.7x 6927 6024 66 Sanger USA Patient with cystic fibrosis Patient with cystic fibrosis Homo sapiens Facultative Rod-shaped Mesophile gram- Free living Pneumonia Host Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia dolosa BACTERIAL Burkholderia dolosa AUO158 AUO158 Burkholderia dolosa AUO158 Gi01125 Genome incomplete Public Broad Institute NIH-NIAID MCS msc@broad.mit.edu BdolA Medical, Human Pathogen 350701 16168 000796_GCAT 638341025 NZ_AAKY00000000 Draft 9x 6247 5493 67 Sanger USA Epidemic strain from Boston Children's Hospital. Isolated from the same patient as strain BCH12 USA Epidemic strain from Boston Children's Hospital. Isolated from the same patient as strain BCH12 42.33716 -71.105434 Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Chronic infection, Necrotizing Pneumonia Host Motile Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus sp. BACTERIAL Enterococcus spp Gi01902 Genome incomplete Public Broad Institute NIH-NIAID MCS msc@broad.mit.edu Medical, Human Pathogen 35783 002535_GCAT 15285 0 0 0 0 USA Homo sapiens Gastrointestinal tract Feces Facultative Mesophile Halotolerant gram+ Free living Urinary infection, Bacteremia, Endocarditis Host, Intestinal microflora, Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia glumae BACTERIAL Burkholderia glumae PG1 PG1 Burkholderia glumae PG1 Gi01068 Genome incomplete Public Competence Network, Goettingen Genomics Laboratory Jaeger KE k.-e.jaeger@fz-juelich.de Agricultural, Plant Pathogen, Biotechnological 595500 33837 000798_GCAT 188110 0 7680 0 0 Germany Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Panicle blight, Seedling rot Host Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia glumae BACTERIAL Burkholderia glumae BGR1 BGR1 Burkholderia glumae Gc00978 Gi00108 Genome Complete and Published Public Crop Functional Genomics Center, Seoul National Univ Kim M mkkim3@plaza.snu.ac.kr bglu 2009-05-22 J. Bacteriology 191, 3758-3759 Plant Pathogen, Agricultural 626418 33901 000799_GCAT 188110 0 NC_012724, NC_012721 Complete Level 6: Finished 2Kb, 10Kb 102798 Phred/Phrap/Consed, Arachne 10.6x Glimmer, GeneMark 6734 5781 2 4 68 Korea diseased rice panicle in Korea Korea Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Panicle blight, Seedling rot Host Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia thailandensis BACTERIAL Burkholderia thailandensis E264, ATCC 700388 E264, ATCC 700388 Burkholderia thailandensis ATCC 700388 ATCC 700388 Yes Gi01950 Genome complete Public Genome Institute of Singapore, Broad Institute, J. Craig Venter Institute Agricultural 271848 19251 002576_GCAT 7237 0 NZ_AACX00000000 Draft 7x 6304 0 67 Sanger Singapore Rice field sample in Thailand Thailand Rice field sample in Thailand Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Soil Motile Non-Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei BACTERIAL Burkholderia mallei JHU JHU Burkholderia mallei JHU Gi01142 Genome incomplete Public J. Craig Venter Institute NIH-NIAID BmalJ Animal Pathogen, Medical, Human Pathogen, Biothreat 334803 13988 000800_GCAT 638341031 NZ_AAIR00000000 Draft 5713 4838 68.4 Sanger USA Rod-shaped Mesophile gram- Free living Glanders, Pneumonia Host Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei BACTERIAL Burkholderia mallei FMH FMH Burkholderia mallei FMH Gi01143 Genome incomplete Public J. Craig Venter Institute NIH-NIAID BmalF Animal Pathogen, Medical, Human Pathogen, Biothreat 334802 13987 000801_GCAT 638341029 NZ_AAIQ00000000 Draft 2273 4912 68.2 Sanger USA Rod-shaped Mesophile gram- Free living Glanders, Pneumonia Host Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei BACTERIAL Burkholderia mallei 2002721280 2002721280 Burkholderia mallei 2002721280 Gi01489 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Bmal Animal Pathogen, Medical, Human Pathogen, Biothreat 370895 16352 000802_GCAT 91193 638341028 NZ_AANX00000000 Draft 5690 4792 68.4 Sanger USA Rod-shaped Mesophile gram- Free living Glanders, Pneumonia Host Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei BACTERIAL Burkholderia mallei PRL-20 PRL-20 Burkholderia mallei PRL-20 Gi01962 Genome incomplete Public J. Craig Venter Institute NIH-NIAID BmalP Animal Pathogen, Medical, Human Pathogen, Biothreat 436115 19147 002589_GCAT 269050 641736199 NZ_AAZP00000000 Draft 5700 6456 68 USA Aerobe Rod-shaped Mesophile gram- Free living Glanders, Pneumonia Host Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia oklahomensis BACTERIAL Burkholderia oklahomensis C6786 C6786 Burkholderia oklahomensis C6786 Gi01963 Genome incomplete Public NMRC BoklC Medical, Human Pathogen 441162 19535 002590_GCAT 159901 641736121 NZ_ABBG00000000 Draft 7000 7089 67.1 USA Wound infection in Oklahoma USA Wound infection in Oklahoma Homo sapiens Patient with wound infection Skin Aerobe Rod-shaped Mesophile gram- Free living Wound infection Host Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia oklahomensis BACTERIAL Burkholderia oklahomensis EO147 EO147 Burkholderia oklahomensis EO147 Gi01964 Genome incomplete Public NMRC BoklE Medical, Human Pathogen 441163 19537 002591_GCAT 267570 641736122 NZ_ABBF00000000 Draft 7000 7342 66.9 USA Ocular ulcer in Georgia USA Ocular ulcer in Georgia Homo sapiens Patient with ocular ulcer Gastrointestinal tract Aerobe Rod-shaped Mesophile gram- Free living Wound infection Host Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 112 112 Burkholderia pseudomallei 112 Gi01965 Genome incomplete Public NMRC Bpse112 Medical, Human Pathogen 441154 19495 002592_GCAT 259644 641736119 NZ_ABBP00000000 Draft 6900 8168 68 USA Clinical isolate from Thailand Thailand Clinical isolate from Thailand Homo sapiens Patient Aerobe Rod-shaped Mesophile gram- Free living Melioidosis Host Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 14 14 Burkholderia pseudomallei 14 Gi01966 Genome incomplete Public NMRC Bpse Medical, Human Pathogen 441160 19507 002593_GCAT 268771 641736130 NZ_ABBJ00000000 Draft 6700 8371 67.8 USA Monkey liver Monkey liver Aerobe Rod-shaped Mesophile gram- Free living Melioidosis Host Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia thailandensis BACTERIAL Burkholderia thailandensis MSMB43 MSMB43 Burkholderia thailandensis MSMB43 Gi01967 Genome incomplete Public NMRC Read T Bpse38 Medical, Human Pathogen 441157 19501 002594_GCAT 641736127 NZ_ABBM00000000 Draft old name was Burkholderia pseudomallei 381 6956 7534 67 USA Drilling bore water Drilling bore water Aerobe Rod-shaped Mesophile gram- Free living Melioidosis Host Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 7894 7894 Burkholderia pseudomallei 7894 Gi01968 Genome incomplete Public NMRC Bpse7 Medical, Human Pathogen 441156 19497 002595_GCAT 262049 641736125 NZ_ABBO00000000 Draft 7000 8423 67.6 USA Aerobe Rod-shaped Mesophile gram- Free living Melioidosis Host Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 9 9 Burkholderia pseudomallei 9 Gi01969 Genome incomplete Public NMRC Bpseu9 Medical, Human Pathogen 441158 19503 002596_GCAT 264779 641736128 NZ_ABBL00000000 Draft 6800 8337 67.8 USA Aerobe Rod-shaped Mesophile gram- Free living Melioidosis Host Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 91 91 Burkholderia pseudomallei 91 Gi01970 Genome incomplete Public NMRC Bpse Medical, Human Pathogen 441159 19505 002597_GCAT 268718 641736129 NZ_ABBK00000000 Draft 6900 8446 67.8 USA Aerobe Rod-shaped Mesophile gram- Free living Melioidosis Host Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei B7210 B7210 Burkholderia pseudomallei B7210 Gi01971 Genome incomplete Public NMRC BpseB Medical, Human Pathogen 441155 19499 002598_GCAT 263619 641736126 NZ_ABBN00000000 Draft 6900 8230 67.9 USA Aerobe Rod-shaped Mesophile gram- Free living Melioidosis Host Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei BCC215 BCC215 Burkholderia pseudomallei BCC215 Gi01972 Genome incomplete Public NMRC BpseBC Medical, Human Pathogen 441152 19491 002599_GCAT 261995 641736117 NZ_ABBR00000000 Draft 7000 8048 68 USA Brazil outbreak strain from clinical specimen Brazil Brazil outbreak strain from clinical specimen Homo sapiens Patient Aerobe Rod-shaped Mesophile gram- Free living Melioidosis Host Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei DM98 (BCC11) DM98 (BCC11) Burkholderia pseudomallei DM98 Gi01973 Genome incomplete Public NMRC BpseD Medical, Human Pathogen 441161 19509 002600_GCAT 263990 641736131 NZ_ABBI00000000 Draft 2371 6688 8641 67 USA Mucoid strain from a clinical specimen Mucoid strain from a clinical specimen Homo sapiens Patient Aerobe Rod-shaped Mesophile gram- Free living Melioidosis Host Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei NCTC 13177 (WKo97) NCTC 13177 (WKo97) Burkholderia pseudomallei NCTC 13177 NCTC 13177 Gi01974 Genome incomplete Public NMRC BpseN Medical, Human Pathogen 441153 19493 002601_GCAT 260125 641736118 NZ_ABBQ00000000 Draft 7100 8211 68 USA Clinical isolate from a Western Australian outbreak Australia Clinical isolate from a Western Australian outbreak Homo sapiens Patient Aerobe Rod-shaped Mesophile gram- Free living Melioidosis Host Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia thailandensis BACTERIAL Burkholderia thailandensis Bt4 Bt4 Burkholderia thailandensis Bt4 Gi01975 Genome incomplete Public NMRC BthaB 441164 19533 002602_GCAT 267197 641736132 NZ_ABBH00000000 Draft 6600 6876 67.6 USA Environmental isolate from northern Australia Australia Environmental isolate from northern Australia Aerobe Rod-shaped Mesophile gram- Free living None Soil Motile Saprophyte Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia thailandensis BACTERIAL Burkholderia thailandensis TXDOH TXDOH Burkholderia thailandensis TXDOH Gi01976 Genome incomplete Public NMRC BthaT 441165 19541 002603_GCAT 641736124 NZ_ABBD00000000 Draft 6515 6830 67.7 USA Blood of 2 year old male Blood of 2 year old male Homo sapiens Male 2 years old Blood Aerobe Rod-shaped Mesophile gram- Free living None Blood, Soil, Host Motile Saprophyte Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni jejuni CG8486 CG8486 Campylobacter jejuni subsp. jejuni CG8486 Gi01977 Genome incomplete Public NMRC Cj Medical, Human Pathogen 398000 17055 002604_GCAT 640963041 NZ_AASY00000000 Draft 1597 1459 30 USA Patient with inflammatory diarrhea in Thailand Thailand Patient with inflammatory diarrhea in Thailand Homo sapiens Patient with inflammatory diarrhea Gastrointestinal tract Feces Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Singles, Chains Food poisoning Host Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei BACTERIAL Burkholderia mallei 10399 10399 Burkholderia mallei ATCC 10399 ATCC 10399 Gi01233 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Bmal Animal Pathogen, Medical, Human Pathogen, Biothreat 412021 13944 000803_GCAT 10399 638341027 NZ_AAHN00000000 Draft 5933 4951 68.5 Sanger USA Aerobe Rod-shaped Mesophile gram- Free living Glanders, Pneumonia Host Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei BACTERIAL Burkholderia mallei GB8 horse 4 GB8 horse 4 Burkholderia mallei GB8 horse 4 Gi00927 Genome incomplete Public J. Craig Venter Institute NIH-NIAID BmalG Animal Pathogen, Medical, Human Pathogen, Biothreat 320390 13945 000804_GCAT 638341030 NZ_AAHO00000000 Draft 5804 4888 68.5 Sanger USA Aerobe Rod-shaped Mesophile gram- Free living Glanders, Pneumonia Host Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 1710a 1710a Burkholderia pseudomallei 1710a Gi01002 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Bpse Medical, Animal Pathogen 320371 13950 000806_GCAT 638341037 NZ_AAHS00000000 Draft 7319 5520 68 Sanger USA Aerobe Rod-shaped Mesophile gram- Free living Pneumonia, Bacteremia, Melioidosis Soil Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei S13 S13 Burkholderia pseudomallei S13 Gi01004 Genome incomplete Public J. Craig Venter Institute NIH-NIAID BpseS Animal Pathogen, Medical, Human Pathogen, Biothreat 320374 13951 000807_GCAT 638341041 NZ_AAHW00000000 Draft 7388 5763 68.1 Sanger USA Aerobe Rod-shaped Mesophile gram- Free living Pneumonia, Bacteremia, Melioidosis Soil Motile Non-Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 1655 1655 Burkholderia pseudomallei 1655 Gi01005 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Bpse Animal Pathogen, Medical, Human Pathogen, Biothreat 331109 13949 000808_GCAT 1655 638341036 NZ_AAHR00000000 Draft 7029 5467 68 Sanger USA Aerobe Rod-shaped Mesophile gram- Free living Pneumonia, Bacteremia, Melioidosis Soil Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 1106b 1106b Burkholderia pseudomallei 1106b Gi01390 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Bpse Animal Pathogen, Medical, Human Pathogen, Biothreat 357347 16181 000811_GCAT 638341035 NZ_AAMB00000000 Draft 8552 5518 68 Sanger USA Aerobe Rod-shaped Mesophile gram- Free living Pneumonia, Bacteremia, Melioidosis Soil Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 406e 406e Burkholderia pseudomallei 406e Gi01391 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Bpse Animal Pathogen, Medical, Human Pathogen, Biothreat 360118 16231 000812_GCAT 638341038 NZ_AAMM00000000 Draft 7321 5672 68 Sanger USA Clinical isolate from Thailand Thailand Clinical isolate from Thailand Homo sapiens Patient Aerobe Rod-shaped Mesophile gram- Free living Pneumonia, Bacteremia, Melioidosis Soil Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei Pasteur Pasteur Burkholderia pseudomallei Pasteur 52237 Gi01007 Genome incomplete Public J. Craig Venter Institute NIH-NIAID BpseP Animal Pathogen, Medical, Human Pathogen, Biothreat 331978 13952 000813_GCAT 638341040 NZ_AAHV00000000 Draft 7346 5652 68 Sanger USA Aerobe Rod-shaped Mesophile gram- Free living Pneumonia, Bacteremia, Melioidosis Soil Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia BACTERIAL Burkholderia pseudomallei 1026b 1026b Gi01164 Genome incomplete Public Univ of Washington Animal Pathogen, Medical, Human Pathogen, Biothreat 28450 000815_GCAT 7239 0 0 0 0 USA Aerobe Rod-shaped Mesophile gram- Free living Melioidosis Host Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli BACTERIAL Campylobacter coli RM2228 RM2228 Campylobacter coli RM2228 ATCC BAA-1061 Gi00118 Genome incomplete Public J. Craig Venter Institute CCO Medical, Human Pathogen, Animal Pathogen 306254 12516 000819_GCAT 110636 638341044 NZ_AAFL00000000 Draft 1860 2062 31 Sanger USA Multi-drug-resistant isolate from a chicken carcass from an inspected slaughter plant Multi-drug-resistant isolate from a chicken carcass from an inspected slaughter plant Chicken Blood Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Chains, Singles Septicemia, Gastroenteritis Intestinal microflora, Host, Blood 42 Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter fetus BACTERIAL Campylobacter fetus venerealis Azul-94 Azul-94 Campylobacter fetus subsp. venerealis str. Azul-94 Gi00119 Genome incomplete Public IIB-UNSAM Sanchez DO dsanchez@iib.unsam.edu.ar pLL1212p0 Medical, Human Pathogen, Animal Pathogen 593452 7 000820_GCAT 11242 640048370 NZ_ACLG00000000 Draft 4.7x 1187 2055 0 40 Sanger Argentina Field isolate obtained from an aborted Bos taurus fetus in Tandil, Argentina Diego J. Comerci (dcomerci@iib.unsam.edu.ar) 1994 Argentina Tandil, Argentina -37.31781 -59.150391 Bos taurus fetus aborted Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Chains, Singles Septicemia, Genital infection, Infertility, Meningitis Host, Intestinal microflora Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter BACTERIAL Campylobacter jejuni Gi00120 Genome incomplete Proprietary Genome Therapeutics Animal Pathogen, Poultry Pathogen, Medical, Human Pathogen 197 000821_GCAT 11258 0 Complete 0 0 0 USA Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Singles, Chains Food poisoning Wastewater Motile Pathogen, Food poisoning Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni jejuni 81-176 81-176 23/36 Campylobacter jejuni subsp. jejuni 81-176 Gi02330 Genome incomplete Public Yale Univ Cjejjejuni Medical, Human Pathogen 354242 17341 003052_GCAT 194541 641736195 NZ_AASL00000000 Draft 1616 1662 30 Sanger USA Outbreak of campylobacteriosis in Minnesota USA due to the consumption of contaminated milk USA Outbreak of campylobacteriosis in Minnesota USA due to the consumption of contaminated milk Homo sapiens Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Singles, Chains Food poisoning Wastewater Motile Pathogen, Food poisoning Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni jejuni 260.94 260.94 Campylobacter jejuni subsp. jejuni 260.94 Gi01261 Genome incomplete Public J. Craig Venter Institute NIH-NIAID CJJ Animal Pathogen, Poultry Pathogen, Medical, Human Pathogen 360108 16229 000824_GCAT 149056 638341049 NZ_AANK00000000 Draft 1657 1815 30 Sanger USA Red Cross Children's Hospital in Cape Town South Africa South Africa Red Cross Children's Hospital in Cape Town South Africa -33.922461 18.416619 Homo sapiens Child Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Chains, Singles Food poisoning, GBS Host, Wastewater Motile Food poisoning, Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni jejuni HB93-13 HB93-13 Campylobacter jejuni subsp. jejuni HB93-13 Gi01262 Genome incomplete Public J. Craig Venter Institute NIH-NIAID CJJHB Animal Pathogen, Poultry Pathogen, Medical, Human Pathogen 360112 16267 000825_GCAT 145904 638341053 NZ_AANQ00000000 Draft 1710 1769 30.6 Sanger USA Feces of an 8-year-old boy in China with acute motor axonal neuropathy (AMAN) form of GBS Feces of an 8-year-old boy in China with acute motor axonal neuropathy (AMAN) form of GBS Homo sapiens Male 8 years old Patient with acute motor axonal neuropathy Gastrointestinal tract Feces Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Singles, Chains Food poisoning, GBS Wastewater, Host Motile Pathogen, Food poisoning Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni jejuni CF93-6 CF93-6 Campylobacter jejuni subsp. jejuni CF93-6 Gi01263 Genome incomplete Public J. Craig Venter Institute NIH-NIAID CJJCF Animal Pathogen, Poultry Pathogen, Medical, Human Pathogen 360111 16265 000826_GCAT 146437 638341052 NZ_AANJ00000000 Draft 1676 1846 30.5 Sanger USA Patient in Japan diagnosed with MFS Japan Patient in Japan diagnosed with MFS Homo sapiens Patient diagnosed with MFS Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Singles, Chains Food poisoning Host, Wastewater Motile Pathogen, Food poisoning Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni jejuni 84-25 84-25 Campylobacter jejuni subsp. jejuni 84-25 Gi01264 Genome incomplete Public J. Craig Venter Institute NIH-NIAID CJJ Medical, Poultry Pathogen, Animal Pathogen, Human Pathogen 360110 16367 000827_GCAT 154196 638341051 NZ_AANT00000000 Draft 1671 1837 30.4 Sanger USA Cerebrospinal fluid of a child with meningitis Cerebrospinal fluid of a child with meningitis Homo sapiens Child Patient with meningitis Brain Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Singles, Chains Food poisoning Host, Wastewater Motile Food poisoning, Pathogen, Auxotroph Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter lari BACTERIAL Campylobacter lari RM2100 RM2100 Campylobacter lari RM2100 ATCC BAA-1060D Gc00851 Gi00122 Genome Complete and Published Public USDA, J. Craig Venter Institute Miller WG William.Miller@ars.usda.gov CLA 2009-02-05 Foodborne Pathog Dis. 5, 371-86 Human Pathogen, Medical, Animal Pathogen 306263 12517 000832_GCAT 643692014 NC_012039 Complete 1562 1571 1 1 29.6 Sanger USA Human clinical isolate Human clinical isolate Homo sapiens Patient with Guillain-Barre syndrome Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Chains, Singles Gastroenteritis, Bacteremia, Diarrhea, Food poisoning Fresh water, Soil Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter upsaliensis BACTERIAL Campylobacter upsaliensis RM3195 RM3195 Campylobacter upsaliensis RM3195 ATCC BAA-1059 Gi00123 Genome incomplete Public J. Craig Venter Institute CUP Animal Pathogen, Human Pathogen, Medical 306264 12518 000833_GCAT 638341055 NZ_AAFJ00000000 Draft 1773 2027 34.3 Sanger USA Feces of a 4-year old patient with Guillain-Barre syndrome Feces of a 4-year old patient with Guillain-Barre syndrome Homo sapiens 4 years old Patient with Guillain-Barre syndrome Gastrointestinal tract Feces Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Singles, Chains Septicemia, Bacteremia, Diarrhea, Gastroenteritis Host Motile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Candidatus Pelagibacter Candidatus Pelagibacter ubique BACTERIAL Candidatus Pelagibacter ubique SAR11 HTCC1002 HTCC1002 Candidatus Pelagibacter ubique HTCC1002 HTCC1002 Gi00836 Genome incomplete Public Oregon State Univ, J. Craig Venter Institute Moore Foundation Giovannoni SJ steve.giovannoni@oregonstate.edu http://mcb.science.oregonstate.edu/giovannoni/people/people.htm PU Environmental, Marine Microbial Initiative (MMI) 314261 13577 000834_GCAT 61204 638341056 NZ_AAPV00000000 Draft 1327 1458 29.8 Sanger USA "10 m depth from Coastal Pacific Ocean, Newport, Oregon" USA "Coastal Pacific Ocean, Newport, Oregon" 44.651523 -124.053042 10 m Aerobe Rod-shaped Mesophile gram- Free living None Marine Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Ruegeria Ruegeria sp. R11 BACTERIAL Ruegeria sp. R11 R11 Ruegeria sp. R11 Gi01983 Genome complete Public J. Craig Venter Institute Moore Foundation Torsten T t.thomas@unsw.edu.au Marine Microbial Initiative (MMI), Seaweed Pathogen 439497 19365 002610_GCAT 0 NZ_ABXM00000000 Draft repalcement submission for Ruegeria R11 draft small-insert and fosmid shotgun library Celera assembly, Consed Glimmer 2 3819 0 1 1 60 Sanger, 454-FLX, WGS USA Bare Island Botany Bay Sydney Australia Australia From the surface of Delisea pulchra from Bare Island, Sydney -33.99389 151.26667 Surface Mesophile gram- Free living Marine Pathogen Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Candidatus Pelagibacter BACTERIAL Candidatus Pelagibacter sp HTCC7211 HTCC7211 Candidatus Pelagibacter sp. HTCC7211 HTCC7211 Gi01918 Genome incomplete Public J. Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm Marine Microbial Initiative (MMI), Environmental 439493 19339 002542_GCAT 0 NZ_ABVS00000000 Draft 1456 0 29 USA BATS Bermuda-Atlantic-Time-Series study site N/A Aerobe Rod-shaped Mesophile gram- Free living None Marine Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Pelodictyon Pelodictyon phaeoclathratiforme BACTERIAL Pelodictyon phaeoclathratiforme BU-1 BU-1 Pelodictyon phaeoclathratiforme BU-1 DSMZ 5477(T) Gc00834 Gi00440 Genome Complete and Published Public DOE Joint Genome Institute DOE Bryant DA dab14@psu.edu Ppha 2008-07-18 Unpublished Biotechnological 324925 13011 000835_GCAT 2670 642555146 NC_011060 Complete 3018 2969 1 0 48.1 Sanger USA Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Marine, Fresh water 15 - 25 Nonmotile Green sulfur Phototroph, Photosynthetic Bacteria Planctomycetes Planctomycetacia Planctomycetales Candidatus Brocadia BACTERIAL Candidatus Brocadia anammoxidans Candidatus Brocadia anammoxidans Gi00097 Metagenome incomplete Public Univ of Nijmegen Biotechnological, Wastewater treatment 174632 13212 000836_GCAT 54215 0 0 0 0 Netherlands Anaerobe Coccus-shaped Mesophile gram- Free living None Fresh water Ammonia-oxidizer Lithotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micrococcaceae Kocuria Kocuria rhizophila BACTERIAL Kocuria rhizophila DC2201 DC2201 Kocuria rhizophila DC2201 DSM 11926, NBRC 103217, ATCC 9341 No Gc00769 Gi01300 Genome Complete and Published Public NITE Fujita N fujita-nobuyuki@nite.go.jp KRH 2008-06-06 J. Bacteriology 190, 4139-46 Biotechnological 378753 27833 000837_GCAT 642555133 NC_010617 Complete 2697 2413 1 71.1 Japan Aerobe Coccus-shaped Mesophile gram+ Free living Singles, Tetrads None Host, Marine Nonmotile Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingobium BACTERIAL Sphingobium japonicum UT26S UT26S NBRC 101211 Gi01844 Genome incomplete Public NITE Fujita N fujita-nobuyuki@nite.go.jp 332056 000838_GCAT 6155 0 0 0 0 Japan Mesophile gram- Free living None Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Haloarcula ARCHAEAL Haloarcula japonica TR-1 TR-1 NBRC 101032 Gi01845 Genome incomplete Public NITE Fujita N fujita-nobuyuki@nite.go.jp Biotechnological 29282 000839_GCAT 697 0 0 0 0 Japan Aerobe Mesophile Halophile gram- Free living None Motile Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Acetobacter Acetobacter pasteurianus BACTERIAL Acetobacter pasteurianus IFO 3283-01 IFO 3283-01 Acetobacter pasteurianus IFO 3283-01 NBRC 3283 Gc01070 Gi01846 Genome Complete and Published Public NITE Azuma Y yazuma@yamaguchi-u.ac.jp 2009-07-28 NAR Epub Agricultural 634452 31129 000840_GCAT 73040 0 NC_013209 Complete Level 6: Finished 1.5Kb, 5Kb 42048 pUC118 9.3x GenomeGambler, GeneHacker, Glimmer 3.0 2907 2628 1 1 50.7 Sanger Japan pellicle on the surface of vinegar fermentation Japan 35.18 136.906389 Aerobe gram- Symbiotic Plants None Nitrogen fixation, Acid-producing Bacteria Deferribacteres Deferribacteres (class) Deferribacterales Deferribacteraceae Deferribacter BACTERIAL Deferribacter desulfuricans SSM1 SSM1 DSM 14738, NBRC 101012 No Gi01847 Genome incomplete Public NITE Fujita N fujita-nobuyuki@nite.go.jp 197162 000841_GCAT 70142 0 0 0 38.6 Japan Deep-sea hydrothermal vent chimney at the Suiyo Seamount in the Izu-Bonin Arc in Japan Japan Deep-sea hydrothermal vent chimney at the Suiyo Seamount in the Izu-Bonin Arc in Japan Anaerobe Rod-shaped Thermophile 5 - 7.5 gram- Free living None 40 - 70 Motile Heterotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Tetragenococcus BACTERIAL Tetragenococcus halophilus NBRC 12172 NBRC 12172 NBRC 12172 Gi01848 Genome incomplete Public NITE Fujita N fujita-nobuyuki@nite.go.jp 51669 000842_GCAT 305691 0 0 0 0 Japan Mesophile gram+ Free living None Bacteria Cyanobacteria Oscillatoriales Arthrospira BACTERIAL Spirulina platensis NIES-39 NIES-39 Gi01849 Genome incomplete Public NITE Fujita N fujita-nobuyuki@nite.go.jp Dietary supplement, Food industry 118562 000843_GCAT 152513 0 0 0 0 Japan Lake Chad Chad Lake Chad 13 14 Spiral-shaped Mesophile gram- Free living None Fresh water, Fresh water Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Microlunatus BACTERIAL Microlunatus phosphovorus NM-1 NM-1 NBRC 101784 Gi01850 Genome incomplete Public NITE Fujita N fujita-nobuyuki@nite.go.jp Biotechnological, EBPR, Environmental 29405 000844_GCAT 12749 0 0 0 67.9 Japan Activated sludge Activated sludge Aerobe Coccus-shaped Mesophile gram+ Free living None Sludge Polyphosphate-accumulating Chemoorganotroph Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Gluconacetobacter Gluconacetobacter xylinus BACTERIAL Gluconacetobacter xylinus NBRC 3288 NBRC 3288 Gluconacetobacter xylinus NBRC 3288 NBRC 3288 Gi01851 Genome incomplete Public NITE Fujita N fujita-nobuyuki@nite.go.jp Agricultural 634177 40297 000845_GCAT 113716 0 NZ_BABN00000000 Draft 255 0 57 Japan Aerobe Rod-shaped Nonsporulating Mesophile gram- Singles None Host Motile Diazotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micromonosporaceae Actinoplanes BACTERIAL Actinoplanes missouriensis NBRC 102363 NBRC 102363 NBRC 102363 Gi01852 Genome incomplete Public NITE Fujita N fujita-nobuyuki@nite.go.jp Antibiotic production, Biotechnological 1866 000846_GCAT 44085 0 0 0 0 Japan Mesophile gram+ Free living None Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Kitasatospora BACTERIAL Kitasatospora setae NBRC 14216 (KM-6054) NBRC 14216 (KM-6054) NBRC 14216 Gi01853 Genome incomplete Public NITE Fujita N fujita-nobuyuki@nite.go.jp 2066 000847_GCAT 153892 0 0 0 0 Japan Mesophile gram+ Free living None Bacteria Proteobacteria Betaproteobacteria Burkholderiales Rubrivivax BACTERIAL Rubrivivax gelatinosus IL144 IL144 NBRC 100245 Gi02035 Genome incomplete Public NITE Fujita N fujita-nobuyuki@nite.go.jp Bioremediation, Biotechnological, Environmental 28068 002664_GCAT 7118 0 0 0 0 Japan Facultative Rod-shaped Mesophile gram- Free living None Sludge, Fresh water, Fresh water Phototroph, Methylotroph Bacteria Firmicutes Bacilli Bacillales Bacillaceae Amphibacillus BACTERIAL Amphibacillus xylanus NBRC 15112 NBRC 15112 NBRC 15112 Gi02036 Genome incomplete Public NITE Fujita N fujita-nobuyuki@nite.go.jp 1449 002665_GCAT 62835 0 0 0 0 Japan Anaerobe Sporulating Mesophile gram+ Free living None Alkaliphile, Xylan degrader Bacteria Firmicutes Clostridia Clostridiales Oscillospiraceae Oscillibacter BACTERIAL Oscillibacter valericigenes Sjm18-20 Sjm18-20 DSM 18026, NBRC 101213 Yes Gi02484 Genome incomplete Public NITE Fujita N fujita-nobuyuki@nite.go.jp 351091 003209_GCAT 249174 0 0 0 0 Japan Alimentary canal of a Japanese corbicula clam Japan Alimentary canal of a Japanese corbicula clam Anaerobe Rod-shaped Nonsporulating Mesophile 6 - 6.5 gram+ Free living None 30 Motile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum BACTERIAL Bifidobacterium longum BORI BORI Bifidobacterium longum BORI Gi02485 Genome incomplete Public KRIBB Medical 478445 21041 003210_GCAT 0 0 0 0 Korea Infant feces Infant feces Homo sapiens Infant Healthy Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Human intestinal microflora, Host 37 - 41 Nonmotile Anti-rotaviral, Probiotic Archaea Euryarchaeota Methanococci Methanococcales Methanococcaceae Methanococcus ARCHAEAL Methanococcus maripaludis KA1 KA1 NBRC 102054 Gi02037 Genome incomplete Public NITE Fujita N fujita-nobuyuki@nite.go.jp Biotechnological, Energy production 39152 002666_GCAT 40 0 0 0 0 Japan Obligate anaerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Singles None Fresh water Motile Nitrogen fixation, Methanogen, Hydrogenotrophic Lithotroph Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Selenomonas Selenomonas ruminantium BACTERIAL Selenomonas ruminantium lactilytica TAM6421 TAM6421 Gi02038 Genome incomplete Public NITE Fujita N fujita-nobuyuki@nite.go.jp Medical 114197 002667_GCAT 0 0 0 0 Japan Bovine rumen Bovine rumen Bovine Gastrointestinal tract Anaerobe Crescent-shaped Mesophile gram+ Free living None Host, Sludge, Gastrointestinal tract Motile Non-Pathogen Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas BACTERIAL Sphingomonas paucimobilis SYK-6 SYK-6 Gi02039 Genome incomplete Public NITE Fujita N fujita-nobuyuki@nite.go.jp Biotechnological, Ecological 13689 002668_GCAT 6178 0 0 0 0 Japan Pulp-bleaching wastewater in Japan Japan Pulp-bleaching wastewater in Japan Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Soil, Host Motile Lignin degrader Heterotroph Bacteria Actinobacteria Actinobacteria (class) BACTERIAL Actinobacterium sp YM16-304 YM16-304 Gi02040 Genome incomplete Public NITE Fujita N fujita-nobuyuki@nite.go.jp 78537 002687_GCAT 0 0 0 0 Japan Mesophile gram+ Free living None Fresh water Bacteria Planctomycetes Planctomycetacia Planctomycetales Candidatus Kuenenia BACTERIAL Candidatus Kuenenia stuttgartiensis Candidatus Kuenenia stuttgartiensis Metagenomic Assembly Gi00307 Metagenome complete Public Univ of Nijmegen, Genoscope, Univ of Vienna Wastewater treatment, Biotechnological 174633 16685 000848_GCAT 53683 0 CT573071-CT573074, CT030148 Draft Level 2: High-Quality Draft 5 0 0 0 European Consortium Anaerobe Mesophile gram- Free living None Ammonia-oxidizer Bacteria Proteobacteria Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter sp. K31 BACTERIAL Caulobacter sp K31 K31 Caulobacter sp. K31 Gc00723 Gi01009 Genome Complete and Published Public DOE Joint Genome Institute DOE Stephens C CStephens@scu.edu Caul 2008-02-07 Unpublished Bioremediation, Environmental, Biotechnological 366602 16306 000849_GCAT 270365 641522612 NC_010338 Complete 13x 5477 5554 1 2 67.2 Sanger USA Low-oxygen groundwater sample Low-oxygen groundwater sample Aerobe Rod-shaped Mesophile gram- Free living Singles None Fresh water Motile Chlorophenol degrading Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Dokdonia Dokdonia donghaensis BACTERIAL Dokdonia donghaensis MED134 MED134 Dokdonia donghaensis MED134 Gi00837 Genome incomplete Public Kalmar Univ, J. Craig Venter Institute Moore Foundation Pinhassi J http://halia.hik.se/start.jsp?page=members/jarone%20pinhassi MED Environmental, Marine Microbial Initiative (MMI) 313590 13544 000850_GCAT 176649 638341059 NZ_AAMZ00000000 Draft 3302 3033 38.2 Sanger USA Mediterranean Sea at 1 meter depth Mediterranean Sea at 1 meter depth 41.66667 2.80000 1 meter Mesophile gram- Free living None Marine Bacteria Cyanobacteria Acaryochloris BACTERIAL Acaryochloris sp CCMEE 5410 CCMEE 5410 Acaryochloris sp. CCMEE 5410 Gi01399 Genome incomplete Public Univ of Oregon, J. Craig Venter Institute Moore Foundation Wood M http://evolution.uoregon.edu/mwood.htm Environmental, Marine Microbial Initiative (MMI) 310037 16707 000851_GCAT 137124 0 4200 0 0 USA Shallow waters from Salton Sea California USA Salton Sea California 33 -116 Surface Aerobe Sphere-shaped Mesophile gram- Free living None Marine Photosynthetic Bacteria Proteobacteria Gammaproteobacteria Oceanospirillales Alcanivoracaceae Alcanivorax Alcanivorax sp. DG881 BACTERIAL Alcanivorax sp DG881 DG881 Alcanivorax sp. DG881 Gi01400 Genome incomplete Public Univ of Tasmania, J. Craig Venter Institute Moore Foundation Bolch C http://fcms.its.utas.edu.au/scieng/aqua/ Marine Microbial Initiative (MMI), Environmental 236097 19279 000853_GCAT 136334 0 NZ_ABRW00000000 Draft 3789 0 58 USA Paralytic shellfish producing dinoflagellate Gymnodinium catenatum isolated from the Derwent estuary, Tasmania, Australia United Kingdom Tasmania Australia -42.88667 147.78333 surface Aerobe Rod-shaped Mesophile Halophile gram- Free living None Marine Nonmotile Oil degrading Oligotroph, Heterotroph Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Arcobacter BACTERIAL Candidatus Arcobacter sulfidicus Candidatus Arcobacter sulfidicus Gi01401 Genome incomplete Public J. Craig Venter Institute, Woods Hole Oceanographic Institute Moore Foundation Sievert S http://www.whoi.edu/hpb/Site.do?id=1273 Marine Microbial Initiative (MMI), Environmental 162154 19297 000854_GCAT 70950 0 0 0 0 USA Sulfidic coastal sediments in Woods Hole USA Sulfidic coastal sediments in Woods Hole 41.526357 -70.668322 Microaerophilic Rod-shaped Mesophile gram- Free living None Sediment, Marine Motile Sulfur oxidizer Chemolithoautotroph Bacteria Candidatus Ovobacter BACTERIAL Candidatus Ovobacter propellens Op_Nibab3 Op_Nibab3 Candidatus Ovobacter propellens Gi01978 Genome incomplete Public J. Craig Venter Institute Moore Foundation Muyzer G gerard@muyzer.eu http://www.muyzer.eu/Site_Gerard_Muyzer/Welcome.html Environmental, Marine Microbial Initiative (MMI) 439487 19335 002605_GCAT 0 0 0 0 USA Marine sulfidic sediments at Niva beach (Denmark) Denmark Marine sulfidic sediments at Niva beach (Denmark) 55.933023 12.528963 Oval-shaped Mesophile Free living None Sediment, Marine Motile Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae BACTERIAL Clostridium innocuum JCM1292 JCM1292 JCM1292, ATCC 14501 Yes Gi02190 Genome incomplete Public Univ of Tokyo Hattori M hattori@k.u-tokyo.ac.jp http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Human Microbiome Project (HMP), Medical 1522 002890_GCAT 927 156898 0 Draft Level 2: High-Quality Draft 0 0 0 Sanger Japan Appendiceal abscess Homo sapiens Gastrointestinal tract Anaerobe Sporulating Mesophile gram+ Pairs, Singles None Human intestinal microflora, Host Motile Commensal Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O26 (EHEC) (EHEC) Gi02191 Genome incomplete Public Univ of Tokyo, Miyazaki Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Medical, Human Pathogen 404399 002891_GCAT 0 Complete 5500 0 0 Sanger Japan Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea Human intestinal microflora, Host Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli c7122 c7122 Escherichia coli c7122 Gi02448 Genome incomplete Public Arizona State Univ Medical, Human Pathogen 475609 20733 003182_GCAT 0 5500 0 0 Sanger USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea Host, Human intestinal microflora 37 Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia BACTERIAL Escherichia coli O111 (EHEC) (EHEC) Gi02192 Genome incomplete Public Univ of Tokyo, Miyazaki Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Medical, Human Pathogen 562 002892_GCAT 231361 0 5500 0 0 Sanger Japan Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea Human intestinal microflora, Host Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia BACTERIAL Escherichia coli O103 (EHEC) (EHEC) Gi02193 Genome incomplete Public Univ of Tokyo, Miyazaki Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Human Pathogen, Medical 562 002893_GCAT 231361 0 Complete 5500 0 0 Sanger Japan Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea Host, Human intestinal microflora Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia BACTERIAL Escherichia coli K12 WACKER WACKER Gi02339 Genome complete Proprietary MWG-Biotech, Eurofins Medigenomix GmbH, Wacker Chemie AG Baumgartl N nadine.baumgartl@wacker.com Medical, Human Pathogen 562 003061_GCAT 231361 0 Complete 5500 0 0 Sanger, 454 Germany Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea Human intestinal microflora, Host Motile Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas gingivalis BACTERIAL Porphyromonas gingivalis ATCC 33277 ATCC 33277 Porphyromonas gingivalis ATCC 33277 ATCC 33277 Yes Gc00809 Gi02194 Genome Complete and Published Public Univ of Tokyo, Nagasaki Univ, Kitasato Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage PGN 2008-05-24 DNA Research 15, 215-25 Medical, Human Pathogen 431947 19051 002894_GCAT 33300 642555148 NC_010729 Complete 12Kb, 10Kb 36394 pTS1 Phred/Phrap GenomeGambler v1.51, Critica, GeneHacker, Glimmer v2.0 2354 2155 1 0 48.4 Sanger Japan human gingival sulcus Homo sapiens Oral Gingival crevices Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Dental plaque, Periodontal infection Gastrointestinal tract, Respiratory tract, Host, Colon, Oral microflora Nonmotile Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium BACTERIAL Clostridium chauvoei Gi02195 Genome incomplete Public Univ of Tokyo, Kanazawa Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Human Pathogen, Medical, Animal Pathogen 46867 002895_GCAT 303031 0 Complete 3000 0 0 Sanger Japan Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Black quarter, Blackleg Host Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium BACTERIAL Clostridium septicum Gi02196 Genome incomplete Public Univ of Tokyo, Kanazawa Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Animal Pathogen, Human Pathogen, Medical 1504 002896_GCAT 70497 0 Complete 0 0 0 Sanger Japan Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas BACTERIAL Halomonas elongata Gi02197 Genome incomplete Public Univ of Tokyo, Osaka Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Biotechnological 2746 002897_GCAT 63473 0 Complete 4100 0 0 Sanger Japan Facultative Rod-shaped Nonsporulating Mesophile Halophile gram- Free living None Fresh water Motile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus reuteri BACTERIAL Lactobacillus reuteri F275, JCM1112 F275, JCM1112 Lactobacillus reuteri JCM 1112 JCM 1112, DSM 20016 Yes Gc00786 Gi02198 Genome Complete and Published Public Univ of Tokyo Morita H morita@azabu-u.ac.jp http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage LAR 2008-04-16 DNA Research 15, 151-61 Biotechnological, Food industry, Human Microbiome Project (HMP), Medical 299033 19011 002898_GCAT 948 232291 642555135 AP007281, NC_010609 Complete 27456 7.4x Glimmer 2.0 2039 1901 1 0 38.9 Sanger, 454 Japan Intestine of an adult human Intestine of an adult human Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living None Host, Human intestinal microflora, Mammalian intestinal microflora, Birds intestinal microflora Nonmotile Probiotic, Non-Pathogen Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus fermentum BACTERIAL Lactobacillus fermentum IFO 3956 IFO 3956 Lactobacillus fermentum IFO 3956 NBRC 3956 Gc00787 Gi02199 Genome Complete and Published Public Univ of Tokyo, Azabu Univ Morita H morita@azabu-u.ac.jp 2008-04-16 DNA Research 15, 151-61 Food industry, Biotechnological 334390 18979 002899_GCAT 259425 641522633 NC_010610 Complete 2Kb, 5Kb 35136 9.5x Glimmer 2.0 2098 1912 1 0 51 Sanger Japan fermented plant material in Japan Institute for Fermentation, Osaka (IFO), Japan Japan Homo sapiens Gastrointestinal tract Intestinal tract Facultative Rod-shaped Mesophile gram+ Free living Chains None Mammalian intestinal microflora, Human intestinal microflora, Birds intestinal microflora, Host Nonmotile Probiotic Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Piscirickettsiaceae BACTERIAL Cycloclasticus sp. TU126 TU126 Gi02200 Genome complete Public Univ of Tokyo, Nihon Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Biotechnological 34067 002900_GCAT 0 Complete 2300 0 0 Sanger Japan Aerobe Rod-shaped Mesophile gram- Free living None Fresh water Motile PAH-degrading Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli SE11 SE11 Escherichia coli SE11 Unknown Gc00875 Gi02201 Genome Complete and Published Public Univ of Tokyo Hattori M hattori@k.u-tokyo.ac.jp http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage 2008-10-23 DNA Research 15, 375-86 Human Microbiome Project (HMP), Dairy industry 409438 18057 002901_GCAT 937 322516 643348551 AP009240, NC_011415 Complete Level 6: Finished Phred/Phrap/Consed 8x Glimmer 2.0 1 4887 4679 1 6 50.8 Sanger Japan healthy adult human Commensal strain Homo sapiens Adult Healthy Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Commensal Pairs, Singles None Host, Human intestinal microflora Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia BACTERIAL Escherichia coli SE15 SE15 Unknown Gi02202 Genome incomplete Public Univ of Tokyo Hattori M hattori@k.u-tokyo.ac.jp http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Medical, Human Microbiome Project (HMP) 562 002902_GCAT 938 231361 0 Complete 5000 0 0 Sanger Japan Homo sapiens Gastrointestinal tract Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs None Host, Human intestinal microflora Motile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces griseus BACTERIAL Streptomyces griseus griseus IFO 13350 IFO 13350 Streptomyces griseus subsp. griseus NBRC 13350 IFO 13350, NBRC 13350 Gc00759 Gi02203 Genome Complete and Published Public Univ of Tokyo Horinouchi S asuhori@mail.ecc.u-tokyo.ac.jp SGR 2008-04-09 J. Bacteriology 190, 4050-60 Anticancer agent, Medical, Biotechnological 455632 20085 002903_GCAT 261858 641522653 NC_010572 Complete Phred/Phrap/Consed 9.5x Glimmer 8545 7240 1 0 72.2 Sanger Japan Aerobe Filament-shaped Sporulating Mesophile gram+ Free living Filaments None Soil 25 - 35 Nonmotile Streptomycin producer Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus mutans Gi02204 Genome incomplete Public Univ of Tokyo Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Dental Pathogen, Medical, Human Pathogen 1309 002904_GCAT 171101 0 Complete 2400 0 0 Sanger Japan Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Dental caries Host, Oral microflora Nonmotile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia japonica BACTERIAL Rickettsia japonica YH YH ATCC VR-1363 Yes Gi02205 Genome incomplete Public Univ of Tokyo, Yamaguchi Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Medical, Human Pathogen 652620 38487 002905_GCAT 5948 0 Complete 1000 0 31.2 Sanger Japan blood of patient with oriental spotted fever, Japan Causes spotted fever in humans and animals Japan Homo sapiens Patient with oriental spotted fever Blood Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Spotted fever Host Nonmotile Pathogen, Intracellular Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydophila BACTERIAL Chlamydophila caviae Gi02206 Genome incomplete Public Univ of Tokyo, Okayama Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Animal Pathogen, Swine Pathogen, Medical 83557 002906_GCAT 144863 0 Complete 1200 0 0 Sanger Japan Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Respiratory infection, Bronchitis, Pharyngitis, Pneumonia Host Nonmotile Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides BACTERIAL Bacteroides sp A_01 A_01 Unknown Gi02207 Genome incomplete Public Univ of Tokyo Hattori M hattori@k.u-tokyo.ac.jp http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Medical, Human Microbiome Project (HMP) 29523 002907_GCAT 910 1973 0 Draft Level 2: High-Quality Draft 5000 0 0 Sanger Japan Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Human intestinal microflora, Host Nonmotile Commensal Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides BACTERIAL Bacteroides massiliensis A_03 A_03 Unknown Gi02208 Genome incomplete Public Univ of Tokyo Hattori M hattori@k.u-tokyo.ac.jp http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Medical, Human Microbiome Project (HMP) 204516 002908_GCAT 909 136630 0 5000 0 49 Sanger Japan Blood culture of a healthy baby born at term Blood culture of a healthy baby born at term Homo sapiens Baby Gastrointestinal tract Feces Anaerobe Rod-shaped Mesophile gram- Free living Singles Blood, Host 37 Commensal Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium BACTERIAL Bifidobacterium breve JCM1192 JCM1192 DSM 20213, JCM1192, ATCC 15700 Yes Gi02209 Genome incomplete Public Univ of Tokyo Hattori M hattori@k.u-tokyo.ac.jp http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Medical, Human Microbiome Project (HMP) 1685 002909_GCAT 914 28109 0 2000 0 0 Sanger Japan intestine of infant Homo sapiens Infant Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host, Human intestinal microflora Nonmotile Commensal Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium BACTERIAL Bifidobacterium bifidum JCM1255 JCM1255 ATCC 29521, JCM1255 Yes Gi02210 Genome incomplete Public Univ of Tokyo Hattori M hattori@k.u-tokyo.ac.jp http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Biotechnological, Medical, Human Microbiome Project (HMP), Food industry 1681 002910_GCAT 913 102411 0 2000 0 0 Sanger Japan Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host Nonmotile Commensal Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium BACTERIAL Bifidobacterium catenulatum JCM1194 JCM1194 DSM 16992, ATCC 27539, JCM1194 Yes Gi02211 Genome incomplete Public Univ of Tokyo Hattori M hattori@k.u-tokyo.ac.jp http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Biotechnological, Medical, Human Microbiome Project (HMP), Food industry 1686 002911_GCAT 915 290578 0 2000 0 0 Sanger Japan Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host Nonmotile Commensal Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Raoultella BACTERIAL Raoultella ornithinolytica AA097 AA097 Unknown Gi02212 Genome incomplete Public Univ of Tokyo Hattori M hattori@k.u-tokyo.ac.jp http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Human Microbiome Project (HMP), Medical 54291 002912_GCAT 953 38339 0 Complete 5400 0 0 Sanger Japan Homo sapiens Gastrointestinal tract Mesophile gram- Free living Commensal Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae BACTERIAL Clostridium ramosum JCM1298 JCM1298 DSM 1402, ATCC 25582, JCM1298 Unknown Gi02213 Genome incomplete Public Univ of Tokyo Hattori M hattori@k.u-tokyo.ac.jp http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Medical, Human Microbiome Project (HMP) 1547 002913_GCAT 929 313118 0 3000 0 0 Sanger Japan Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Soil Motile Commensal Chemoorganotroph Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae Clostridium ramosum BACTERIAL Clostridium ramosum DSM 1402 DSM 1402 Clostridium ramosum DSM 1402 DSM 1402, NCIB 10673, ATCC 25582 Yes Gi02294 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi CLORAM Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 445974 19663 SRX000013 003016_GCAT 233 15709 641736198 ABFX00000000, NZ_ABFX00000000 Draft 48812 PCAP 10x GeneMark v3.3, Glimmer2 v2.13 36 3234 3220 31 454-GS20, Sanger USA Human feces DSM 1402 Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Opportunistic infection Host, Human intestinal microflora 37 Motile Commensal Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Blautia Blautia hydrogenotrophica BACTERIAL Blautia hydrogenotrophicus S5a33, DSM 10507 S5a33, DSM 10507 Blautia hydrogenotrophica DSM 10507 DSM 10507 Yes Gi02486 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 476272 21007 SRS000024 003211_GCAT 749 643886199 NZ_ACBZ00000000, ACBZ00000000 Complete Newbler 2.0.0-PostRelease-10/28/2008 21.8X 212 3565 3933 45.1 454, Sanger USA Feces of a non-methane-excreting human subject DSM 10507 Feces of a non-methane-excreting human subject Homo sapiens Gastrointestinal tract Feces Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living None Host, Human intestinal microflora Nonmotile Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium Eubacterium siraeum BACTERIAL Eubacterium siraeum DSM 15702 DSM 15702 Eubacterium siraeum DSM 15702 DSM 15702, BEI HM-51 Yes Gi02295 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi EUBSIR Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 428128 18921 003017_GCAT 374 265952 641736184 NZ_ABCA00000000, ABCA00000000 Draft 46012 PCAP 9.7x GeneMark v3.3, Glimmer2 v2.13 66 2695 2769 44 454-GS20, Sanger USA Human feces DSM 15702 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living None Host, Human intestinal microflora Commensal Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis holarctica URFT1 URFT1 Francisella tularensis subsp. holarctica URFT1 Gi02296 Genome incomplete Public CNRS Raoult,D didier.raoult@medecine.univ-mrs.fr Medical, Human Pathogen 445226 19645 003018_GCAT 0 NZ_ABAZ00000000 Draft 480 1800 0 32 Sanger France Lymph node of a patient with oculo-glandular tularemia Lymph node of a patient with oculo-glandular tularemia Homo sapiens Patient with oculo-glandular tularemia Lymph nodes Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Type B tularemia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes XFL0605 XFL0605 Listeria monocytogenes XFL0605 Gi02297 Genome incomplete Public Hubei Entry - Exit Inspection and Quarantine Bureau Medical, Human Pathogen 447719 19793 003019_GCAT 0 0 0 0 Sanger China Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles, Chains Food poisoning Food, Soil, Fresh water Motile Pathogen Chemoorganotroph Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Flexibacteraceae Spirosoma Spirosoma linguale BACTERIAL Spirosoma linguale DSM 74 DSM 74 Spirosoma linguale DSM 74 ATCC 33905, LMG 10896, DSM 74 Yes Gi02298 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 504472 28817 003020_GCAT 0 NZ_ABUR00000000 Draft GeneMark 74 8501 7214 50 454, Sanger USA Laboratory water bath Laboratory water bath Aerobe Rod-shaped Mesophile Yellow gram- Free living None Fresh water, Soil, Fresh water 20 - 30 Motile Chemoorganotroph Bacteria Planctomycetes Planctomycetacia Planctomycetales Planctomycetaceae Isosphaera Isosphaera pallida BACTERIAL Isosphaera pallida IS1B, ATCC 43644 IS1B, ATCC 43644 Isosphaera pallida ATCC 43644 ATCC 43644, DSM 9630 Yes Gi02488 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 575540 32825 003213_GCAT 2884 0 0 0 62 454, Sanger USA algal mat from Kah-nee-tah Hot Spring in Oregon USA algal mat from Kah-nee-tah Hot Spring in Oregon 44.86123 -121.201442 Aerobe Coccus-shaped Mesophile gram- Free living None Hot spring, Fresh water 45 Motile Bacteria Thermobaculum Thermobaculum terrenum BACTERIAL Thermobaculum terrenum YNP1, ATCC BAA-798 YNP1, ATCC BAA-798 Thermobaculum terrenum ATCC BAA-798 CCMEE 7001, ATCC BAA-798 Gi02489 Genome complete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 525904 29523 003214_GCAT 51584 643886025 NZ_ABUX00000000 Complete Level 6: Finished Prodigal 3101 2930 1 1 53.4 454, Sanger USA "Soil in Yellowstone National Park, Wyoming, USA" USA Yellowstone National Park, Wyoming, USA 44.393704 -110.567703 Aerobe Rod-shaped Nonsporulating Thermophile 7 Pink gram+ Free living Pairs, Singles None Soil 65 - 92 Nonmotile Heterotroph Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Sebaldella Sebaldella termitidis BACTERIAL Sebaldella termitidis ATCC 33386 ATCC 33386 Sebaldella termitidis ATCC 33386 NCTC 11300, ATCC 33386 Yes Gi02490 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 526218 29539 003215_GCAT 0 NZ_ABUO00000000 Complete Level 6: Finished GeneMark 28 4453 4678 33.3 454, Sanger USA termite intestine termite intestine Termite Gastrointestinal tract Gut Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Gut, Host Nonmotile Uricolytic Bacteria Proteobacteria Gammaproteobacteria Oceanospirillales Oceanospirillaceae Oleispira BACTERIAL Oleispira antarctica RB-8, DSM 14852 RB-8, DSM 14852 DSM 14852 Yes Gi02491 Genome incomplete Public Max Planck Institute Max Planck Society Kube M kube@molgen.mpg.de Biotechnological 188908 003217_GCAT 26739 0 4400 0 43 Germany "Hydrocarbon-degrading enrichment cultures obtained from Antarctic coastal marine environments (Rod Bay, Ross Sea)" Hydrocarbon-degrading enrichment cultures obtained from Antarctic coastal marine environments (Rod Bay, Ross Sea) Aerobe Psychrophile gram- Free living None Marine, Antarctic Motile Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Flexibacteraceae Flectobacillus BACTERIAL Flectobacillus major DSM 103 DSM 103 DSM 103, ATCC 29496, VKM B-859 Yes Gi02299 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 103 003021_GCAT 2591 0 0 0 0 454, Sanger USA Mesophile gram- Free living None Fresh water, Fresh water Bacteria Deinococcus-Thermus Deinococci Thermales Thermaceae Meiothermus Meiothermus ruber BACTERIAL Meiothermus ruber DSM 1279 DSM 1279 Meiothermus ruber DSM 1279 VKM B-1258, ATCC 35948, DSM 1279 Yes Gi02300 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 504728 28827 003022_GCAT 643886210 NZ_ABUF00000000 Complete Prodigal 6 3097 3105 1 0 63.4 454, Sanger USA Hot spring Hot spring Aerobe Rod-shaped Thermophile Free living None 50 - 60 Nonmotile Bacteria Planctomycetes Planctomycetacia Planctomycetales Planctomycetaceae Planctomyces Planctomyces limnophilus BACTERIAL Planctomyces limnophilus DSM 3776 DSM 3776 Planctomyces limnophilus DSM 3776 ATCC 43296, IFAM 1008, DSM 3776 Yes Gi02301 Genome complete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 521674 29411 003023_GCAT 0 NZ_ABUK00000000 Complete Level 6: Finished GeneMark 5460 4370 1 1 53.7 454, Sanger USA Surface water Surface water Aerobe Sphere-shaped Mesophile gram- Free living None Marine, Fresh water Motile Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfomicrobiaceae Desulfomicrobium Desulfomicrobium baculatum BACTERIAL Desulfomicrobium baculatum X, DSM 4028 X, DSM 4028 Desulfomicrobium baculatum DSM 4028 CCUG 34229, DSM 4028, VKM B-1378 Yes Gc01026 Gi02302 Genome Complete and Published Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org 2009-06-09 SIGS 1(1), 29-37 Tree of Life, GEBA 525897 29527 003024_GCAT 643886119 NZ_ABTP00000000 Complete Level 6: Finished 8Kb, 454 pMCL200 Newbler 1.1.02.15, Phrap 6.8x Sanger; 30.4x 454 Prodigal 3942 3566 1 0 58.6 454-FLX, Sanger USA Manganese ore 1975 or earlier Manganese ore Obligate anaerobe Rod-shaped Nonsporulating Mesophile 0.6um 1-2um gram- Free living None 28-37 Motile Sulfate reducer Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Rhodothermaceae Rhodothermus Rhodothermus marinus BACTERIAL Rhodothermus marinus R-10, DSM 4252 R-10, DSM 4252 Rhodothermus marinus DSM 4252 DSM 4252, ATCC 43812 Yes Gi02303 Genome complete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Biotechnological, Tree of Life, GEBA 518766 29281 003025_GCAT 0 NZ_ABUL00000000 Complete Level 6: Finished 8 Kb, Fosmid pMCL200, pcc1Fos, 454 Newbler version 1.1.02.15, Phrap 8.8x Sanger; 23.8x 454 Prodigal 1.4, GenePRIMP 3386 2962 1 1 64.3 Sanger, 454-FLX USA Submarine alkaline hot spring at Reykjanes in Iceland 1988 Iceland Submarine hot spring at Reykajanes, Isafjardardjup Bay, off cost of Iceland 63.88 -22.5 2-3 meters Aerobe Rod-shaped Nonsporulating Thermophile Halophile 7 0.5 um 2-2.5 um Red gram- Free living Singles None Marine, Hot spring 65 Nonmotile Heterotroph Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Flammeovirgaceae Thermonema BACTERIAL Thermonema lapsum DSM 5718 DSM 5718 ATCC 43542, DSM 5718 Yes Gi02304 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 28195 003026_GCAT 2626 0 0 0 0 454, Sanger USA Hot spring Hot spring Thermophile gram- Free living None Hot spring 60 Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga ochracea BACTERIAL Capnocytophaga ochracea VPI 2845, DSM 7271 VPI 2845, DSM 7271 Capnocytophaga ochracea DSM 7271 ATCC 27872, DSM 7271, JCM 12966 Yes Gc01027 Gi02305 Genome Complete and Published Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Coch 2009-08-26 SIGS in press GEBA, Tree of Life, Medical, Human Pathogen 521097 29403 003027_GCAT 643886078 NC_013162 Complete Level 6: Finished 6.5Kb pMCL200 pcc1Fos Newbler 1.1.02.15, Phrap 9.9x Sanger; 25.2x 454 Prodigal 15 2612 2252 1 0 40 454-FLX, Sanger USA Human oral cavity Human oral cavity Homo sapiens Oral Facultative Rod-shaped Nonsporulating Mesophile 0.42 - 0.6 um 2.5 - 5.7um Yellow gram- Free living Opportunistic infection, Periodontal infection Human oral microflora, Host 30 - 37 Motile Opportunistic Pathogen Chemoorganotroph Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Arcobacter Arcobacter nitrofigilis BACTERIAL Arcobacter nitrofigilis DSM 7299 DSM 7299 Arcobacter nitrofigilis DSM 7299 CCUG 15893, NCTC 12251, LMG 7604, ATCC 33309, DSM 7299 Yes Gi02306 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 572480 32593 003028_GCAT 260782 0 0 0 0 454, Sanger USA roots of the marshplant Spartina alterniflora in Nova Scotia, Canada Canada roots of the marshplant Spartina alterniflora in Nova Scotia, Canada Spartina alterniflora Microaerophilic Rod-shaped Nonsporulating Mesophile gram- Symbiotic Spartina alterniflora None Host 25 Motile Nitrogen fixation Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Ferrimonadaceae Ferrimonas Ferrimonas balearica BACTERIAL Ferrimonas balearica PAT, DSM 9799 PAT, DSM 9799 Ferrimonas balearica DSM 9799 DSM 9799 Yes Gi02307 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 550540 30799 003029_GCAT 9123 0 0 0 50 454, Sanger USA "Surface sediment in harbor of Palma de Mallorca, Spain" Spain Palma de Mallorca, Spain 39.56666 2.63333 Facultative Rod-shaped Mesophile gram- Free living None Marine, Fresh water 28 Iron reducer Bacteria Deinococcus-Thermus Deinococci Thermales Thermaceae Meiothermus Meiothermus silvanus BACTERIAL Meiothermus silvanus DSM 9946 DSM 9946 Meiothermus silvanus DSM 9946 ATCC 700542, DSM 9946 Yes Gi02308 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 526227 29551 003030_GCAT 643886211 NZ_ABUG00000000 Draft GeneMark 30 3652 3779 62.7 454, Sanger USA Hot spring from Portugal Portugal Hot spring from Portugal Aerobe Rod-shaped Thermophile Free living None Hot spring 50 Nonmotile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Dialister BACTERIAL Dialister pneumosintes DSM 11619 DSM 11619 CCUG 21025, ATCC 33048, DSM 11619 Yes Gi02309 Genome incomplete Public Miguel Hernandez Univ, Montpellier Univ Spanish Ministry of Health Mira A alex.mira@umh.es http://egg.umh.es/ Medical, Human Pathogen 39950 003031_GCAT 13826 0 Draft 1300 0 35 Spain Human nasal passage abscess Human nasal passage abscess Homo sapiens Airways Nasal Anaerobe Rod-shaped Mesophile gram+ Free living Periodontitis Host 37 Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Streptobacillus Streptobacillus moniliformis BACTERIAL Streptobacillus moniliformis 9901, DSM 12112 9901, DSM 12112 Streptobacillus moniliformis DSM 12112 ATCC 14647, DSM 12112 Yes Gi02312 Genome complete Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org Human Pathogen, Tree of Life, Medical, GEBA 519441 29309 003034_GCAT 0 NZ_ABUT00000000 Complete Level 6: Finished 8 Kb, Fosmid, 454 22979 Sanger, 326576 pyrosequence pMCL200, pcc1Fos, 454 Newbler version 1.1.02.15, Phrap 11.5x Sanger; 24.9x pyrosequence Prodigal 1.4, GenePRIMP 45 1673 1566 1 1 26 454-FLX, Sanger USA Patient with rat-bite fever in France France Patient with rat-bite fever in France Homo sapiens Patient with rat-bite fever Facultative Rod-shaped Nonsporulating Mesophile 0.3-0.7 um 1-5 um gram- Free living Filaments Rat-bite fever, Endocarditis, Haverhill fever Host 37 Nonmotile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Brachyspiraceae Brachyspira Brachyspira murdochii BACTERIAL Brachyspira murdochii 56-150, DSM 12563 56-150, DSM 12563 Brachyspira murdochii DSM 12563 ATCC 51284, DSM 12563, CIP 105832 Yes Gi02313 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 526224 29543 003051_GCAT 88867 643886169 NZ_ABTG00000000 Draft GeneMark 7 3189 3055 27.7 454, Sanger USA intestinal contents of healthy swine intestinal contents of healthy swine Swine Healthy Intestinal tract Facultative Spiral-shaped Nonsporulating Mesophile gram- Free living None Intestinal microflora, Host Motile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Kangiella Kangiella koreensis BACTERIAL Kangiella koreensis SW-125, DSM 16069 SW-125, DSM 16069 Kangiella koreensis DSM 16069 KCTC 12182, DSM 16069 Yes Gc01097 Gi02314 Genome Complete and Published Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org 2009-09-01 Unpublished GEBA, Tree of Life 523791 29443 003036_GCAT 103041 643886028 NC_013166 Complete Level 6: Finished 8Kb, 454 478372 pMCL200 Newbler 1.1.02.15, Phrap 8.6x Sanger; 41x 454 Prodigal 2852 2695 1 0 43.7 454, Sanger USA Sea water of tidal flat sediment in the Daepo Beach, of the Yellow Sea in South Korea South Korea 15388751 Sea water of tidal flat sediment of the Yellow Sea in South Korea 33.245043 126.409526 Facultative Rod-shaped Nonsporulating Mesophile 7 - 8 0.2-0.5 um 1.5-4.5 um Brown gram- Free living None Marine 30 - 37 Nonmotile Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Flexibacteraceae Leadbetterella Leadbetterella byssophila BACTERIAL Leadbetterella byssophila 4M15, DSM 17132 4M15, DSM 17132 KACC 11308, DSM 17132 Yes Gi02316 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 649349 38283 003038_GCAT 115032 0 In progress 0 0 33 454, Sanger USA Cotton-waste composts used as mushroom cultivation in South Korea South Korea Cotton-waste composts used as mushroom cultivation in South Korea Aerobe Rod-shaped Mesophile gram- Free living None Nonmotile Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Atopobium Atopobium parvulum BACTERIAL Atopobium parvulum IPP 1246, DSM 20469 IPP 1246, DSM 20469 Atopobium parvulum DSM 20469 JCM 10300, ATCC 33793, DSM 20469 Yes Gc01099 Gi02317 Genome Complete and Published Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org 2009-09-09 Unpublished Tree of Life, GEBA 521095 29401 003039_GCAT 643886168 NC_013203 Complete Level 6: Finished 12,842 Sanger, 359,479 pyrosequence pMCL200, pcc1Fos Newbler, phrap 7.8x Sanger; 43.4x 454 Prodigal, GenePRIMP 1543 1419 1 0 45.7 454-FLX, Sanger USA Gingival crevices of the human oral cavity before 1937 Gingival crevices of the human oral cavity Homo sapiens Oral Gingival crevices Obligate anaerobe Coccus-shaped Nonsporulating Mesophile 0.3 - 0.6 um gram+ Free living Pairs, Singles None Host, Oral microflora, Human airways 37 - 45 Nonmotile Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Anaerococcus Anaerococcus prevotii BACTERIAL Anaerococcus prevotii PC 1, DSM 20548 PC 1, DSM 20548 Anaerococcus prevotii DSM 20548 NCTC 11806, JCM 6508, CCUG 41932, ATCC 9321, CIP 105881, DSM 20548 Yes Gc01089 Gi02318 Genome Complete and Published Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Apre 2009-08-28 SIGS in press Tree of Life, GEBA 525919 29533 003040_GCAT 643886125 NC_013171 Complete Level 6: Finished 8Kb, Fosmid, 454 pMCL200, pcc1Fos, 454 Newbler version 1.1.02.15, Arachne 6.8x Sanger; 42.3x 454 Prodigal 1883 1803 1 1 35.6 Sanger, 454-FLX, Illumina USA Human plasma Isolated from pathological vagina secretions and lung abscesses Human plasma Homo sapiens Blood Plasma Anaerobe Coccus-shaped Nonsporulating Mesophile 0.6 - 0.9 um gram+ Free living Pairs Opportunistic infection Host, Vagina microflora, Skin microflora, Mouth microflora 37 Nonmotile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Acidaminococcus Acidaminococcus fermentans BACTERIAL Acidaminococcus fermentans VR4, DSM 20731 VR4, DSM 20731 Acidaminococcus fermentans DSM 20731 ATCC 25085, DSM 20731 Yes Gi02319 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 591001 33685 003041_GCAT 13852 0 0 0 0 454, Sanger USA Pig gut Pig gut Sus scrofa Gastrointestinal tract Intestinal tract Anaerobe Coccus-shaped Nonsporulating Mesophile 7 gram- Free living None Intestinal tract, Host 37 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Intrasporangiaceae Intrasporangium BACTERIAL Intrasporangium calvum DSM 43043 DSM 43043 IMET 7816, IFO 12989, CUB 430, JCM 3097, ATCC 23552, NBRC 12989, KCC A-0097, NCIB 10167, DSM 43043 Yes Gi02320 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 53358 003042_GCAT 90541 0 0 0 0 454, Sanger USA Air in a school dining room Air in a school dining room Mesophile gram+ Free living None Air 28 Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Segniliparaceae Segniliparus Segniliparus rotundus BACTERIAL Segniliparus rotundus DSM 44985 DSM 44985 CDC 1076, ATCC BAA-972, DSM 44985, JCM 13578, CIP 108378 Yes Gi02321 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 640132 37711 003043_GCAT 105706 0 Draft Prodigal 28 3147 2045 68 454, Sanger USA Human sputum Human sputum Homo sapiens Airways Sputum Rod-shaped Mesophile gram+ Free living None 28 Bacteria Deferribacteres Deferribacteres (class) Deferribacterales Deferribacteraceae Denitrovibrio Denitrovibrio acetiphilus BACTERIAL Denitrovibrio acetiphilus N2460, DSM 12809 N2460, DSM 12809 Denitrovibrio acetiphilus DSM 12809 DSM 12809 Yes Gi02322 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 522772 29431 003044_GCAT 43329 643886155 NZ_ABTN00000000 Draft GeneMark 45 3190 3229 42.6 454, Sanger USA Oil reservoir model column Oil reservoir model column Anaerobe Vibrio-shaped Nonsporulating Mesophile gram- Free living None Marine, Fresh water Motile Nitrate reducer Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Sulfurospirillum Sulfurospirillum deleyianum BACTERIAL Sulfurospirillum deleyianum 5175, DSM 6946 5175, DSM 6946 Sulfurospirillum deleyianum DSM 6946 DSM 6946, ATCC 51133 Yes Gi02323 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 525898 29529 003045_GCAT 0 NZ_ABUV00000000 Draft GeneMark 19 2291 2459 39 454, Sanger USA Mud, forest pond sediment in Germany Germany Mud, forest pond in Germany Microaerophilic Rod-shaped Mesophile gram- Free living None Sediment Motile Sulfur respiration Bacteria Firmicutes Bacilli Bacillales Alicyclobacillaceae Alicyclobacillus Alicyclobacillus acidocaldarius BACTERIAL Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 104-IA, DSM 446 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 DSM 446, ATCC 27009 Yes Gc01110 Gi02324 Genome Complete and Published Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Aaci 2009-09-09 Unpublished Tree of Life, GEBA 521098 29405 003046_GCAT 643886185 NC_013205 Complete Level 6: Finished Prodigal, GenePRIMP 3018 3032 1 3 62 454, Sanger USA "Yellowstone National Park, acid hot spring" USA Yellowstone National Park, acid hot spring 44.376262 -110.690383 Aerobe Rod-shaped Sporulating Thermophile 3 - 4 0.7 - 0.8 um 2 - 3 um gram+ Free living Chains None 60 Thermoacidophile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XIII. Incertae Sedis Mogibacterium BACTERIAL Mogibacterium timidum VPI D10B-17, DSM 3998 VPI D10B-17, DSM 3998 DSM 3998, ATCC 33092 No Gi02325 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 35519 003047_GCAT 14163 0 0 0 0 454, Sanger USA Subgingival region of mouth Subgingival region of mouth Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Oral microflora, Host Bacteria Actinobacteria Actinobacteria (class) Acidimicrobiales Acidimicrobiaceae Acidimicrobium Acidimicrobium ferrooxidans BACTERIAL Acidimicrobium ferrooxidans ICP, DSM 10331 ICP, DSM 10331 Acidimicrobium ferrooxidans DSM 10331 NBRC 103882, JCM 15462, DSM 10331 Yes Gc01023 Gi02326 Genome Complete and Published Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org 2009-06-09 SIGS 1(1), 38-45 Tree of Life, GEBA 525909 29525 003048_GCAT 643886095 NZ_ABSZ00000000 Complete Level 6: Finished 8kb, 454, Illumina pMCL200 Newbler, Arachne 6.8x Sanger; 52.9x pyrosequence Prodigal 2158 2092 1 0 68 Sanger, 454-FLX, Illumina USA Hot spring run-off in Iceland before 1993 Iceland Krmsuvik geothermal area 63.93 -22.1 Aerobe Rod-shaped Nonsporulating Thermophile gram+ Free living None Fresh water 48 Motile Iron oxidizer, Acidophile Autotroph Bacteria Firmicutes Bacilli Bacillales Alicyclobacillaceae Bacillus tusciae BACTERIAL Bacillus tusciae T2, DSM 2912 T2, DSM 2912 Bacillus tusciae DSM 2912 DSM 2912 Yes Gi02327 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 562970 31345 003049_GCAT 14331 0 Draft 43 33062 3449 59.1 454, Sanger USA Solfatara in Italy Italy Solfatara in Italy Sporulating Thermophile gram+ Free living None 50 Acidophile Chemolithoautotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium BACTERIAL Clostridium paraputrificum JCM1293 JCM1293 ATCC 25780, BCRC 14550, JCM1293 Yes Gi02214 Genome incomplete Public Univ of Tokyo Hattori M hattori@k.u-tokyo.ac.jp http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Medical, Human Microbiome Project (HMP) 29363 002914_GCAT 928 16228 0 3000 0 0 Sanger Japan Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Singles, Pairs Motile Commensal Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium BACTERIAL Clostridium clostridioforme JCM1291 JCM1291 Gi02215 Genome incomplete Public Univ of Tokyo, RIKEN, Tokushima Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage 1531 002915_GCAT 13979 0 3000 0 0 Sanger Japan Anaerobe Rod-shaped Sporulating Mesophile gram+ Pairs, Singles Host Motile Commensal Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Ruminococcus BACTERIAL Ruminococcus gnavus TBH11 Unknown Gi02217 Genome incomplete Public Univ of Tokyo Hattori M hattori@k.u-tokyo.ac.jp http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Medical, Human Microbiome Project (HMP) 33038 002917_GCAT 961 14031 0 40000 0 0 Sanger Japan Homo sapiens Gastrointestinal tract Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ None Host, Human intestinal microflora Nonmotile Non-Pathogen Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus rhamnosus BACTERIAL Lactobacillus rhamnosus GG, ATCC 53103 GG, ATCC 53103 ATCC 53103 Gi02218 Genome incomplete Public Univ of Tokyo, Azabu Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Food industry, Biotechnological 568703 002918_GCAT 107861 0 Complete 2300 0 0 Sanger Japan Homo sapiens Gastrointestinal tract Intestinal tract Microaerophilic Rod-shaped Mesophile gram+ Free living None Intestinal microflora, Host Nonmotile Probiotic, Non-Pathogen Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus casei BACTERIAL Lactobacillus casei casei ATCC 393 ATCC 393 ATCC 393 Yes Gi02219 Genome incomplete Public Univ of Tokyo, Azabu Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Biotechnological, Lactic acid production, Food industry 219334 002919_GCAT 79380 0 3000 0 0 Sanger Japan dairy products (cheese) Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Mesophile gram+ Free living Chains None Intestinal microflora, Host Nonmotile Probiotic Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium BACTERIAL Clostridium acetobutylicum Gi02220 Genome incomplete Public Univ of Tokyo, Kyushu Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Acetone production, Ethanol production, Butanol production, Biotechnological 1488 002920_GCAT 16187 0 4000 0 0 Sanger Japan Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Soil Motile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Wigglesworthia Wigglesworthia glossinidia BACTERIAL Wigglesworthia morsitans Gi02221 Genome incomplete Public Univ of Tokyo, Yale Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Evolutionary, Biotechnological 36868 002921_GCAT 0 700 0 0 Sanger Japan Mesophile gram- Symbiotic Endosymbiotic intracellular Glossina morsitans None Endosymbiont, Insect endosymbiont, Host Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micromonosporaceae Micromonospora BACTERIAL Micromonospora olivasterospora Gi02222 Genome incomplete Public Univ of Tokyo, Kitasato Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Biotechnological 1880 002922_GCAT 238130 0 8000 0 0 Sanger Japan Aerobe Sporulating Mesophile gram+ Free living None Soil, Fresh water Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema BACTERIAL Treponema phagedenis Gi02223 Genome incomplete Public Univ of Tokyo, Miyazaki Univ Hattori M http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage 162 002923_GCAT 340719 0 3500 0 0 Sanger Japan Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Motile Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma BACTERIAL Mycoplasma agalactiae VP20-L15/02 VP20-L15/02 Mycoplasma agalactiae VP20-L15/02 Gi02224 Genome incomplete Public Univ of Delhi Medical, Human Pathogen 2110 19953 002924_GCAT 15940 0 0 0 0 Sanger India Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Pneumonia, Arthritis, Mastitis Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Beutenbergiaceae Beutenbergia Beutenbergia cavernae BACTERIAL Beutenbergia cavernae HKI 0122, DSM 12333 HKI 0122, DSM 12333 Beutenbergia cavernae DSM 12333 IFO 16432, ATCC BAA-8, DSM 12333, NBRC 16432 Yes Gc01025 Gi02225 Genome Complete and Published Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Bcav 2009-06-09 SIGS 1(1), 21-28 Tree of Life, GEBA 471853 20827 002925_GCAT 26352 643692008 NZ_ABTE00000000 Complete Level 6: Finished 8Kb, Fosmid, 454 pMCL200, pcc1Fos Newbler 1.1.02.15, Phrap 8.56x Sanger; 10.86x 454 Prodigal 4669 4278 1 0 73 454-FLX, Sanger USA Reed Flute Cave, Guilin, Guangxi, China about 1999 China Reed Flute Cave, Guilin, Guangxi, China 25.307878 110.263306 Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Clusters, Chains, Singles None Soil 28 Nonmotile L-Lysine containing Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Dermacoccaceae Kytococcus Kytococcus sedentarius BACTERIAL Kytococcus sedentarius 541, DSM 20547 541, DSM 20547 Kytococcus sedentarius DSM 20547 ATCC 14392, DSM 20547, CCM 314 Yes Gc01042 Gi02226 Genome Complete and Published Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org 2009-06-26 SIGS 1(1), 12-20 Biotechnological, Tree of Life, Medical, GEBA 478801 21067 002926_GCAT 643886000 NZ_ABUD00000000 Complete Level 6: Finished 8Kb, Fosmid 61582 Phrap 17.3x Sanger GeneMark, GenePRIMP 2785 2703 1 0 71.63 Sanger USA slide submerged in sea water probably in San Diego about or before 1944 USA San Diego 32.718834 -117.163841 Obligate aerobe Sphere-shaped Nonsporulating Mesophile 0.8 - 1.1 um gram+ Free living Tetrads Opportunistic infection, Pitted keratolysis, Pneumonia Marine, Skin microflora 28 - 36 Nonmotile Pathogen, Non-Haemolytic, Keratin degradation Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Jonesiaceae Jonesia Jonesia denitrificans BACTERIAL Jonesia denitrificans 55134, DSM 20603 55134, DSM 20603 Jonesia denitrificans DSM 20603 ATCC 14870, NCTC 10816, DSM 20603, CIP 55134 Yes Gc01092 Gi02227 Genome Complete and Published Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Jden 2009-08-27 Unpublished Tree of Life, GEBA 471856 20833 002927_GCAT 12600 643886030 NC_013174 Complete Level 6: Finished 8Kb, Fosmid pMCL200, pcc1Fos 9.5x Sanger Prodigal 2749 2635 1 0 58.4 454, Sanger USA Boiled ox blood France Boiled ox blood Ox Blood Facultative Rod-shaped Nonsporulating Mesophile 5-7 0.3 - 0.5 um 2 -3 um gram+ Free living None 37 Motile Chemoorganoheterotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptosporangiaceae Streptosporangium Streptosporangium roseum BACTERIAL Streptosporangium roseum NI 9100, DSM 43021 NI 9100, DSM 43021 Streptosporangium roseum DSM 43021 CBS 313.56, DSM 43021, IAM 14294, JCM 3005, IFO 3776, ATCC 12428 Yes Gi02229 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 479432 21083 002929_GCAT 0 NZ_ABUU00000000 Draft GeneMark 498 10108 9506 70.8 454, Sanger USA Vegetable garden soil Vegetable garden soil Aerobe Filament-shaped Sporulating Mesophile gram+ Free living None Soil 28 Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Nakamurellaceae Nakamurella Nakamurella multipartita BACTERIAL Nakamurella multipartita Y-104, DSM 44233 Y-104, DSM 44233 Nakamurella multipartita DSM 44233 JCM 9543, DSM 44233, CCM 4621, ATCC 700099 Yes Gi02230 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 479431 29537 002930_GCAT 643886076 NZ_ABUH00000000 Draft GeneMark 96 6016 5649 70 454, Sanger USA Actived sludge cultured in fed-batch reactors Actived sludge cultured in fed-batch reactors Aerobe Coccus-shaped Nonsporulating Mesophile 7 0.8 - 3.0 um gram+ Free living Pairs, Clusters, Singles None Sludge 28 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Pseudonocardiaceae Jiangella BACTERIAL Jiangella gansuensis YIM 002, DSM 44835 YIM 002, DSM 44835 YIM 002, KCTC 19044, DSM 44835, CCTCC AA 204001 Yes Gi02231 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 281473 002931_GCAT 103412 0 0 0 70 454, Sanger USA "Desert soil sample in Gansu Province, north-west China" China Desert soil sample in Gansu Province, north-west China Rod-shaped Mesophile gram+ Free living None Soil 28 Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinospicaceae Actinospica Actinospica robiniae BACTERIAL Actinospica robiniae GE134769, DSM 44927 GE134769, DSM 44927 Actinospica robiniae DSM 44927 DSM 44927, NRRL B-24432 Yes Gi02232 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org GEBA, Tree of Life 479430 21079 002932_GCAT 0 0 0 70.8 Sanger, 454 USA "Forest soil from Lombardia, Italy" Italy Lombardia, Italy Aerobe Filament-shaped Sporulating Mesophile 5.0 gram+ Free living Filaments None Soil 28 Nonmotile Acidophile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Catenulisporaceae Catenulispora Catenulispora acidiphila BACTERIAL Catenulispora acidiphila ID139908, DSM 44928 ID139908, DSM 44928 Catenulispora acidiphila DSM 44928 NRRL B-24433, DSM 44928, JCM 14897 Yes Gc01085 Gi02233 Genome Complete and Published Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org 2009-08-21 SIGS in press Tree of Life, GEBA 479433 21085 002933_GCAT 643886182 NC_013131 Complete Level 6: Finished 126,099 Sanger pMCL200, pcc1Fos Phrap 10x Prodigal 10467 9125 1 0 70 Sanger USA Forest soil from Gerenzano italy before 2006 Italy Gerenzano, italy 45.640618 9.002209 Aerobe Filament-shaped Sporulating Mesophile 6 gram+ Free living None Soil 22 - 28 Nonmotile Acidophile Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Cryptobacterium Cryptobacterium curtum BACTERIAL Cryptobacterium curtum 12-3T, DSM 15641 12-3T, DSM 15641 Cryptobacterium curtum DSM 15641 DSM 15641, CCUG 43107, ATCC 700683 Yes Gc01086 Gi02234 Genome Complete and Published Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org 2009-08-26 SIGS in press GEBA, Tree of Life, Medical, Human Pathogen 469378 20739 002939_GCAT 643886195 NC_013170 Complete Level 6: Finished 8Kb, Fosmid pMCL200, pcc1Fos Newbler 1.1.03.24 , PGA 12.9x Sanger; 20x 454 GeneMark 4.6b, tRNAScan-SE-1.23, infernal 0.81, GenePRIMP 1617 1422 1 0 51 454-FLX, Sanger USA Periodontal pocket of an adult patient with periodontal disease in 1995 1995 Periodontal pocket of an adult patient with periodontal disease in 1995 Homo sapiens Adult Patient with periodontal disease Oral Obligate anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Caries, Periodontal infection Human oral microflora, Host 37 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Nocardioidaceae Kribbella Kribbella flavida BACTERIAL Kribbella flavida DSM 17836 DSM 17836 Kribbella flavida DSM 17836 DSM 17836, KCTC 9580, JCM 10339, NBRC 14399 Yes Gi02235 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 479435 21089 002940_GCAT 643886029 NZ_ABUC00000000 Draft GeneMark 33 7577 7321 70.6 454, Sanger USA Soil from China China Soil from China Aerobe Rod-shaped Sporulating Mesophile gram+ Free living None Soil 28 Bacteria Chloroflexi Thermomicrobia (class) Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus BACTERIAL Sphaerobacter thermophilus 4ac11, DSM 20745 4ac11, DSM 20745 Sphaerobacter thermophilus DSM 20745 ATCC 49802, DSM 20745 Yes Gi02236 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 479434 21087 002941_GCAT 0 NZ_ABUQ00000000 Draft GeneMark 15 3988 3602 68 454, Sanger USA Thermophilically treated sewage sludge Thermophilically treated sewage sludge Aerobe Rod-shaped Nonsporulating Thermophile gram+ Free living None Sludge 55 Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Pseudonocardiaceae Thermobispora Thermobispora bispora BACTERIAL Thermobispora bispora R51, DSM 43833 R51, DSM 43833 Thermobispora bispora DSM 43833 NBRC 14880, IFO 14880, ATCC 19993, DSM 43833, CBS 139.67 Yes Gi02237 Genome complete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 469371 20737 002942_GCAT 0 Complete Prodigal 4189 3659 1 0 72.4 Sanger, 454 USA Decaying manure Decaying manure Aerobe Filament-shaped Sporulating Thermophile gram+ Free living None 55 - 65 Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Thermomonosporaceae Thermomonospora BACTERIAL Thermomonospora curvata DSM 43183 DSM 43183 Thermomonospora curvata DSM 43183 IAM 14296, NCIMB 10081, ATCC 19995, DSM 43183, KCC A-0096, IMET 9551, CBS 141.67, JCM 3096 Yes Gi02238 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Biotechnological, Tree of Life, GEBA 2020 20825 002943_GCAT 11996 643886184 NZ_ABUZ00000000 Draft GeneMark 159 5558 5117 71.6 Sanger, 454 USA Municipal refuse compost samples Municipal refuse compost samples Aerobe Rod-shaped Sporulating Thermophile 6 gram+ Free living Filaments None 65 Cellulose degrader Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Desulfotomaculum Desulfotomaculum acetoxidans BACTERIAL Desulfotomaculum acetoxidans 5575, DSM 771 5575, DSM 771 Desulfotomaculum acetoxidans DSM 771 DSM 771, VKM B-1644, ATCC 49208 Yes Gc01106 Gi02239 Genome Complete and Published Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org 2009-08-30 Unpublished Tree of Life, GEBA 485916 27947 002944_GCAT 13678 643886154 NC_013216 Complete Level 6: Finished 8Kb, Fosmid pMCL200, pcc1Fos Phred/Phrap/Consed 8.56x Sanger Prodigal, GenePRIMP 4545 4470 1 0 41 Sanger USA Piggery waste in Gottingen, Germany 1976 Germany Gottingen, Germany 51.533333 9.933333 Obligate anaerobe Rod-shaped Sporulating Mesophile 7 - 7.2 gram- Free living None Sea water, Soil, Mud, Fresh water, Animal intestinal microflora 36 Motile Sulfate reducer, Hydrogen sulfide gas release Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Leptotrichia Leptotrichia buccalis BACTERIAL Leptotrichia buccalis C-1013-b, DSM 1135 C-1013-b, DSM 1135 Leptotrichia buccalis DSM 1135 ATCC 14201, DSM 1135, NCTC 10249, JCM 12969 Yes Gc01090 Gi02240 Genome Complete and Published Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org 2009-09-01 SIGS in press GEBA, Tree of Life, Medical, Human Pathogen 523794 29445 002945_GCAT 643886034 CP001685 Complete Level 6: Finished 8Kb, Fosmid, 454 pMCL200, pcc1Fos Newbler version 1.1.02.15, Phrap 9.7x Sanger; 42x 454 Prodigal, GenePRIMP 2465 2367 1 0 29.7 Sanger, 454 USA Supragingival calculus Supragingival calculus Homo sapiens Oral Dental plaque Subgingival Anaerobe Rod-shaped Nonsporulating Mesophile Green gram- Free living Chains, Filaments Septicemia, Cavitary pneumonia, Endocarditis, Bacteremia Blood, Human oral microflora 37 Nonmotile Pathogen Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Veillonella Veillonella parvula BACTERIAL Veillonella parvula Te3, DSM 2008 Te3, DSM 2008 Veillonella parvula DSM 2008 JCM 12972, DSM 2008, ATCC 10790 Yes Gi02241 Genome complete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org GEBA, Tree of Life, Medical, Human Pathogen 479436 21091 002946_GCAT 13821 643886016 NZ_ABVB00000000 Complete Level 6: Finished 8Kb, Fosmid, 454 16169 Sanger, 445271 pyrosequence pMCL200, pcc1Fos Newbler, Phrap 7.67x Sanger; 50.6x pyrosequence Prodigal, GenePRIMP 10 2132 1920 1 0 38.6 454, Sanger USA Intestinal tract before 1898 France Intestinal tract Homo sapiens Gastrointestinal tract Feces Anaerobe Coccus-shaped Nonsporulating Mesophile 6.5 - 8.0 0.3 - 0.5 um gram- Free living Chains, Pairs Opportunistic infection, Endocarditis, Bacteremia Human intestinal microflora, Human vaginal microflora, Human oral microflora 37 Nonmotile Nonfermentative, Pathogen Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Eggerthella Eggerthella lenta BACTERIAL Eggerthella lenta VPI 0255, DSM 2243 VPI 0255, DSM 2243 Eggerthella lenta DSM 2243 JCM 9979, DSM 2243, ATCC 25559 Yes Gc01054 Gi02242 Genome Complete and Published Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org 2009-07-01 Unpublished GEBA, Tree of Life, Medical, Human Pathogen 479437 21093 002947_GCAT 643886098 NZ_ABTT00000000 Complete Level 6: Finished 8Kb, Fosmid, 454 39464-Sanger, 471609-454 pMCL200, pcc1Fos, 454 Newbler version 1.1.02.15, Phrap 10.2x Sanger; 25.3x pyrosequence Prodigal, GenePRIMP 3232 3181 1 0 64.2 Sanger, 454-FLX USA Rectal tumor 1938 Rectal tumor Homo sapiens Patient with rectal tumor Blood Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs, Singles Bacteremia Host, Blood, Human intestinal microflora 37 Nonmotile Pathogen Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter heparinus BACTERIAL Pedobacter heparinus HIM 762-3, DSM 2366 HIM 762-3, DSM 2366 Pedobacter heparinus DSM 2366 NCIB 9290, NBRC 12017, ATCC 13125, IFO 12017, DSM 2366 Yes Gc01041 Gi02243 Genome Complete and Published Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org 2009-08-05 SIGS 1(1), 54-62 Tree of Life, GEBA 485917 27949 002948_GCAT 643886003 NC_013061 Complete Level 6: Finished 8Kb pMCL200, pcc1Fos Phrap 7.5x Sanger Prodigal, GenePRIMP 5167 4339 1 0 42 Sanger USA Soil Soil Aerobe Rod-shaped Nonsporulating Mesophile 7 1 - 3 um 0.5 - 6 um gram- Free living None Soil 25 - 30 Motile Chondroitinases producer, Heparinases producer Chemoorganotroph Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Chitinophaga Chitinophaga pinensis BACTERIAL Chitinophaga pinensis UQM 2034, DSM 2588 UQM 2034, DSM 2588 Chitinophaga pinensis DSM 2588 LMG 13176, UQM 2034, ATCC 43595, DSM 2588 Yes Gc01083 Gi02244 Genome Complete and Published Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org 2009-08-19 SIGS in press Bioenergy, Tree of Life, GEBA, Biotechnological 485918 27951 002949_GCAT 643886186 NC_013132 Complete Level 6: Finished Prodigal 9127 7399 1 0 45 Sanger, 454 USA Pine litter in Australia Australia Pine litter in Australia Aerobe Rod-shaped Nonsporulating Mesophile 7 0.8 - 0.9 um gram- Free living Singles None 23 - 24 Motile Chitin degradation, Biomass degrader Chemoorganotroph Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Haloterrigena Haloterrigena turkmenica ARCHAEAL Haloterrigena turkmenica VKM, DSM 5511 VKM, DSM 5511 VKM B-1734, DSM 5511 Yes Gi02245 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 543526 0029350_GCAT 665 0 Draft 5443 5752 60 454, Sanger USA Mesophile gram- Free living None Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfohalobiaceae Desulfohalobium Desulfohalobium retbaense BACTERIAL Desulfohalobium retbaense DSM 5692 DSM 5692 Desulfohalobium retbaense DSM 5692 DSM 5692 Yes Gc01111 Gi02246 Genome Complete and Published Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org Dret 2008-09-09 Unpublished Tree of Life, GEBA 485915 29199 002951_GCAT 10400 643886099 NC_013223 Complete Level 6: Finished Prodigal, GenePRIMP 2864 2559 1 1 57.3 Sanger, 454 USA Saline sediment from Retba Lake in Senegal Africa Senegal Retba Lake in Senegal Africa 14.833333 -17.233333 Anaerobe Rod-shaped Nonsporulating Mesophile Halophile gram- Free living None 35 Motile Sulfate reducer Bacteria Synergistetes Synergistia Synergistales Synergistaceae Thermanaerovibrio Thermanaerovibrio acidaminovorans BACTERIAL Thermanaerovibrio acidaminovorans Su883, DSM 6589 Su883, DSM 6589 Thermanaerovibrio acidaminovorans DSM 6589 ATCC 49978, DSM 6589 Yes Gc01091 Gi02247 Genome Complete and Published Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org 2009-08-25 Unpublished Tree of Life, GEBA 525903 29531 002952_GCAT 1650 0 NZ_ABUW00000000 Complete Level 6: Finished 8Kb, Fosmid, 454 19,461 Sanger, 358,573 454 pMCL200, pcc1Fos, 454 Newbler version 1.1.02.15, Phrap 9.7x Sanger; 9.9x 454 Prodigal 1848 1825 1 0 63.8 Sanger, 454 USA Upflow anaerobic sludge bed reactor of a sugar refinery, Breda, the Netherlands 1992 Netherlands Granular methanogenic sludge 51.589322 4.774491 Obligate anaerobe Rod-shaped Nonsporulating Thermophile 0.5 - 0.6 um 2.5 - 3 um gram- Free living None Sludge 55 Motile Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Halomicrobium Halomicrobium mukohataei ARCHAEAL Halomicrobium mukohataei arg-2, DSM 12286 arg-2, DSM 12286 Halomicrobium mukohataei DSM 12286 JCM 9738, NCIMB 13541, DSM 12286, ATCC 700874 Yes Gc01100 Gi02248 Genome Complete and Published Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Hmuk 2009-09-03 SIGS in press Tree of Life, GEBA 485914 27945 002953_GCAT 245441 643886133 NC_013202 Complete Level 6: Finished 8Kb, Fosmid, 454 48,917 Sanger reads, 443,713 454 reads pMCL200, pcc1Fos, 454 Newbler version 1.1.02.15, Phrap 13.4x Sanger; 31x 454 Prodigal, GenePRIMP 3332 3475 1 1 65.5 Sanger, 454 USA Salinas grandes from Andes highlands in Jujuy Argentina 1991 Argentina Salinas grandes from Andes highlands in Jujuy Argentina -22.66332 -66.23672 Sea level Facultative Rod-shaped Nonsporulating Mesophile Halophile gram- Free living Singles None Soil, Salt marsh 45 Motile Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Halorhabdus Halorhabdus utahensis ARCHAEAL Halorhabdus utahensis AX-2, DSM 12940 AX-2, DSM 12940 Halorhabdus utahensis DSM 12940 DSM 12940, JCM 11049 Yes Gc01053 Gi02250 Genome Complete and Published Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org 2009-07-01 Unpublished Tree of Life, GEBA 519442 29305 002955_GCAT 696 643886167 NZ_ABTZ00000000 Complete Level 6: Finished 8Kb, Fosmid, 454 382722 pMCL200, pcc1Fos Newbler version 1.1.02.15, Phrap 8.3x Sanger; 21.2x 454 Prodigal 3116 3076 1 0 62.9 454, Sanger USA Sediment of Great Salt Lake, Utah, USA USA Great Salt Lake, Utah, USA 41.177342 -112.50211 Aerobe Pleomorphic-shaped Nonsporulating Mesophile Halophile 5.5 - 8.5 Red gram- Free living None Soil 50 Motile Bacteria Proteobacteria Deltaproteobacteria Myxococcales Haliangiaceae Haliangium Haliangium ochraceum BACTERIAL Haliangium ochraceum SMP-2, DSM 14365 SMP-2, DSM 14365 Haliangium ochraceum DSM 14365 JCM 11303, DSM 14365 Yes Gi02251 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 502025 28711 002956_GCAT 10654 643886128 Draft Prodigal 45 9423 7115 69.5 Sanger, 454 USA Coastal sands from Japan Japan Coastal sands from Japan Aerobe Rod-shaped Mesophile Halophile Yellow gram- Free living None Coastal, Marine, Sand 30 Motile Bacteria Firmicutes Clostridia Thermoanaerobacterales Thermoanaerobacterales Family III. Incertae Sedis Thermosediminibacter Thermosediminibacter oceani BACTERIAL Thermosediminibacter oceani JW/IW-1228P, DSM 16646 JW/IW-1228P, DSM 16646 Thermosediminibacter oceani DSM 16646 DSM 16646, ATCC BAA-1034 Yes Gi02252 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 555079 30983 002957_GCAT 0 Draft 2171 2377 46.3 454, Sanger USA Deep sea sediments (252 m below sea level) of Peru Margin collected during Leg 201 of the Ocean Drilling Program Peru Deep sea sediments (252 m below sea level) of Peru Margin collected during Leg 201 of the Ocean Drilling Program 252 meters Anaerobe Rod-shaped Thermophile 6.3 - 9.3 gram- Free living None Deep sea, Sediment, Soil 52 - 76 Motile Barophile Bacteria Bacteroidetes Bacteroidia Bacteroidales Rikenellaceae Alistipes BACTERIAL Alistipes finegoldii AHN 2437, DSM 17242 AHN 2437, DSM 17242 DSM 17242 Yes Gi02253 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 214856 002958_GCAT 128182 0 0 0 0 Sanger, 454 USA Human appendix tissue Human appendix tissue Homo sapiens Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Tsukamurellaceae Tsukamurella Tsukamurella paurometabola BACTERIAL Tsukamurella paurometabola DSM 20162 DSM 20162 Tsukamurella paurometabola DSM 20162 DSM 20162, ATCC 8368 Yes Gi02254 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Biocontrol, Tree of Life, GEBA 521096 29399 002959_GCAT 643886013 NZ_ABVA00000000 Draft GeneMark 8 4495 4480 68.4 454, Sanger USA "Cases of systemic infection, usually in association with other diseases" Cases of systemic infection, usually in association with other diseases Homo sapiens Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Sludge, Soil Nonmotile Hydrogen sulfide producer Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Megasphaera BACTERIAL Megasphaera elsdenii LC1, DSM 20460 LC1, DSM 20460 DSM 20460, NCIB 8927, ATCC 25940 Yes Gi02255 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org GEBA, Tree of Life, Medical, Human Pathogen 907 002960_GCAT 338322 0 0 0 53 Sanger, 454 USA Rumen of sheep Rumen of sheep Sheep Gastrointestinal tract Anaerobe Coccus-shaped Mesophile gram+ Free living Endocarditis Gastrointestinal tract, Host, Human intestinal microflora 37 Pathogen Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Selenomonas BACTERIAL Selenomonas sputigena DSM 20758 DSM 20758 DSM 20758 Yes Gi02256 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org GEBA, Tree of Life, Medical, Human Pathogen 69823 002961_GCAT 31951 0 0 0 0 454, Sanger USA Subgingival sulcus Subgingival sulcus Anaerobe Crescent-shaped Mesophile gram+ Free living Periodontitis, Septicemia Gastrointestinal tract, Respiratory tract, Host 37 Motile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Geodermatophilaceae Geodermatophilus Geodermatophilus obscurus BACTERIAL Geodermatophilus obscurus G-20, DSM 43160 G-20, DSM 43160 Geodermatophilus obscurus DSM 43160 IAM 14282, JCM 3152, CBS 237.69, DSM 43160, IFO 13315, ATCC 25078 Yes Gi02257 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 526225 29547 002962_GCAT 643886209 NZ_ABTU00000000 Draft GeneMark 39 5300 5285 74 Sanger, 454 USA Soil from the Amargosa desert in Nevada USA Soil from the Amargosa desert in Nevada 36.48581 -116.507365 Aerobe Coccus-shaped Mesophile gram- Free living Filaments None 28 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Gordoniaceae Gordonia Gordonia bronchialis BACTERIAL Gordonia bronchialis DSM 43247 DSM 43247 Gordonia bronchialis DSM 43247 LMG 5355, NCTC 10667, DSM 43247, JCM 3198, ATCC 25592 Yes Gi02258 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org GEBA, Tree of Life, Medical, Human Pathogen 526226 29549 002963_GCAT 643886149 NZ_ABTV00000000 Draft Prodigal 39 5250 5167 67 454, Sanger USA Sputum of woman with cavitary disease of both upper lungs Sputum of woman with cavitary disease of both upper lungs Homo sapiens Female Patient with cavitary disease Airways Aerobe Rod-shaped Mesophile gram+ Free living Filaments Bacteremia, Endocarditis Host 28 Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Dietziaceae Dietzia BACTERIAL Dietzia maris IMV 195, DSM 43672 IMV 195, DSM 43672 ATCC 35013, DSM 43672, CIP 104188, IFO 15801, JCM 6166 Yes Gi02259 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org GEBA, Medical, Tree of Life, Opportunistic Pathogen, Nosocomial Pathogen 37915 002964_GCAT 93197 0 0 0 50 Sanger, 454 USA Soil Soil Gastrointestinal tract Aerobe Mesophile gram+ Free living Bacteremia, Hip Prosthesis Infection Gastrointestinal tract, Skin microflora, Soil, Host 28 Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Kineosporiaceae Cryptosporangium BACTERIAL Cryptosporangium arvum YU 629-21, DSM 44712 YU 629-21, DSM 44712 IFO 15965, HUT 6619, DSM 44712, NBRC 15965, JCM 10424 Yes Gi02260 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 80871 002965_GCAT 11442 0 0 0 0 454, Sanger USA Cultivated soil from a vegetable field in Japan Japan Cultivated soil from a vegetable field in Japan Mesophile gram+ Free living Soil 28 Bacteria Ktedonobacteria Ktedonobacterales Ktedonobacteraceae Ktedonobacter Ktedonobacter racemifer BACTERIAL Ktedonobacter racemifer SOSP1-21, DSM 44963 SOSP1-21, DSM 44963 Ktedonobacter racemifer DSM 44963 DSM 44963 Yes Gi02261 Genome Permanent Draft Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 485913 27943 002966_GCAT 0 Complete Level 2: High-Quality Draft 0 0 53.9 454, Sanger USA Soil sample collected in Gerenzano Italy Italy Soil sample collected in Gerenzano Italy Aerobe Filament-shaped Sporulating Mesophile 4.8 - 6.8 gram+ Free living Filaments None Soil 28 - 33 Nonmotile Acidophile Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus sp. B14905 BACTERIAL Bacillus sp. B14905 B14905 Bacillus sp. B14905 Gi01402 Genome incomplete Public SDSU, J. Craig Venter Institute Moore Foundation Edwards R http://www.sci.sdsu.edu/~smaloy/CMS/ BB14905 Marine Microbial Initiative (MMI), Environmental 388400 18949 000855_GCAT 212211 640612200 NZ_AAXV00000000 Draft 4495 4875 38 USA Surface waters Offshore Gulf of Mexico Mexico Surface waters Offshore Gulf of Mexico surface Aerobe Rod-shaped Sporulating Mesophile gram+ Free living None Marine, Surface water Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus sp. SG-1 BACTERIAL Bacillus sp. SG-1 SG-1 Bacillus sp. SG-1 Gi01403 Genome incomplete Public UCSD, J. Craig Venter Institute Moore Foundation Tebo B http://tebolab.ucsd.edu/ BSG Marine Microbial Initiative (MMI), Environmental 161544 19283 000856_GCAT 251168 640963033 NZ_ABCF00000000 Draft 3944 4517 42 USA San Diego coastal sediments 10m depth USA San Diego coastal sediments 10m depth 10 m but also isolates from surface to 200 m Rod-shaped Mesophile gram+ Free living None Marine, Sediment Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Thiotrichaceae Beggiatoa BACTERIAL Beggiatoa alba B18LD B18LD ATCC 33555 Gi01563 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biochemical, Ecological, Biotechnological 1022 000857_GCAT 7504 0 0 0 0 USA Mesophile gram- Free living None Soil Sulfur oxidizer Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Thiotrichaceae Beggiatoa Beggiatoa sp. 'Orange Guaymas' BACTERIAL Beggiatoa sp. Orange Guaymas Orange Guaymas Beggiatoa sp. 'Orange Guaymas' Gi01404 Genome incomplete Public Univ of North Carolina at Chapel Hill, J. Craig Venter Institute Moore Foundation Teske A http://www.marine.unc.edu/ Marine Microbial Initiative (MMI), Environmental 391602 19285 000858_GCAT 0 0 0 0 USA Guaymas Basin hydrothermal vent site Mexico Guaymas Basin hydrothermal vent site 27 -111 Facultative Filament-shaped Mesophile gram- Free living None Marine, Hydrothermal vent Motile Sulfur oxidizer Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Thiotrichaceae Beggiatoa Beggiatoa sp. PS BACTERIAL Beggiatoa sp. PS PS Beggiatoa sp. PS Gi01890 Genome incomplete Public Allegheny-Singer Research Institute BGP Environmental 422289 18683 000859_GCAT 640963011 NZ_ABBZ00000000 Draft 7631 6744 38 USA Sediments at a depth of 4 meters in the harbor of Eckernford, Germany on the Baltic Sea" Germany harbor of Eckernford, Germany 54.470842 9.83457 4 meters Mesophile 1 cm gram- Free living Filaments None Hydrothermal vent, Marine, Sediment Multicellular, Sulfur oxidizer Chemolithotroph Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Thiotrichaceae Beggiatoa Beggiatoa sp. SS BACTERIAL Beggiatoa sp. SS SS Beggiatoa sp. SS Gi02293 Genome incomplete Public Allegheny-Singer Research Institute BGS Environmental 422288 18685 003015_GCAT 640963012 NZ_ABBY00000000 Draft 1334 1450 43 USA "Sediments at a depth of 4 meters in the harbor of Eckernford, Germany on the Baltic Sea" Germany Harbor of Eckernford, Germany 54.470842 9.83457 4 meters Aerobe Mesophile 1 cm gram- Free living Filaments None Hydrothermal vent, Marine, Sediment Motile Sulfur oxidizer, Multicellular Autotroph, Chemoorganotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Beijerinckiaceae Beijerinckia Beijerinckia indica BACTERIAL Beijerinckia indica indica ATCC 9039 ATCC 9039 Beijerinckia indica subsp. indica ATCC 9039 ATCC 9039 Yes Gc00766 Gi01551 Genome Complete and Published Public DOE Joint Genome Institute DOE Dunfield P pfdunfie@ucalgary.ca Bind 2008-04-11 Unpublished Biopolymer production, Oil industry, Biotechnological 395963 20841 000860_GCAT 641522606 NC_010581 Complete 4170 3859 1 3 57 USA Aerobe Rod-shaped Mesophile gram- Free living Singles None Soil 20-30 Nonmotile Nitrogen fixation, Nonmethanotrophic Chemoorganotroph Bacteria Proteobacteria Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas sp. BAL3 BACTERIAL Brevundimonas sp BAL3 BAL3 Brevundimonas sp. BAL3 Gi01405 Genome incomplete Public Univ of Kalmar, J. Craig Venter Institute Moore Foundation Hagstrvm A http://halia.hik.se/start.jsp?page=members/ake%20hagstrom Marine Microbial Initiative (MMI), Environmental 391600 19287 000861_GCAT 0 NZ_ABRU00000000 Draft 3636 0 67 USA 4m depth in the Baltic Sea Germany 4m depth in the Baltic Sea 63.51611 19.81583 4 meters Aerobe Rod-shaped Mesophile gram- Free living None Marine Bacteria Firmicutes Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Carboxydibrachium Carboxydibrachium pacificum BACTERIAL Carboxydibrachium pacificum JM, DSM 12653 JM, DSM 12653 Carboxydibrachium pacificum DSM 12653 DSM 12653 Yes Gi01406 Genome incomplete Public J. Craig Venter Institute Moore Foundation Gonzalez J jmgrau@irnase.csic.es http://www.irnase.csic.es/ Marine Microbial Initiative (MMI), Environmental 391606 19289 000862_GCAT 39044 0 , NZ_ABXP00000000 Draft 2294 1694 38 USA 1500m depth in Okinawa Trough Japan 1500m depth in Okinawa Trough 27.55000 126.93333 1500 meters Anaerobe Rod-shaped Thermophile gram+ Free living Singles None Marine 70 Nonmotile Bacteria Proteobacteria Epsilonproteobacteria Nautiliales Nautiliaceae Caminibacter Caminibacter mediatlanticus BACTERIAL Caminibacter mediatlanticus TB-2 TB-2 Caminibacter mediatlanticus TB-2 DSM 16658 Yes Gi01407 Genome incomplete Public Rutgers Univ, J. Craig Venter Institute Moore Foundation Vetriani C http://marine.rutgers.edu/deep-seamicrobiology/ CMTB Marine Microbial Initiative (MMI), Environmental 391592 19293 000863_GCAT 640963039 NZ_ABCJ00000000 Draft 1662 1953 27 USA 2300m depth at Mid-Atlantic Ridge vent 2300m depth at Mid-Atlantic Ridge vent 36.23333 -33.90167 2300 meters Rod-shaped Thermophile gram- Free living None Marine 55 Motile Lithotroph Bacteria Bacteroidetes Candidatus Cardinium BACTERIAL Candidatus Cardinium hertigii Gi01565 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Evolutionary, Ecological 247481 000864_GCAT 100336 0 DNA Received 0 0 0 USA Mesophile gram- Encarsia hispida None Host Sulfur oxidizer Bacteria Firmicutes Bacilli Lactobacillales Carnobacteriaceae Carnobacterium Carnobacterium sp. AT7 BACTERIAL Carnobacterium sp. AT7 AT7 Carnobacterium sp. AT7 Gi01408 Genome incomplete Public UCSD, J. Craig Venter Institute Moore Foundation Bartlett D http://sio.ucsd.edu/rab/act_detail.cfm?state=%25%28%5E%23%29T%3C0%20%0A CAT7 Marine Microbial Initiative (MMI), Environmental 333990 19299 000865_GCAT 257448 641380440 NZ_ABHH00000000 Draft 2442 2590 35 USA 2500m depth in Aleutian Trench 1961 2500m depth in Aleutian Trench 52.88500 -163.00000 2500 meters Mesophile gram+ Free living None Marine Piezophile Bacteria Cyanobacteria Chroococcales Cyanobium BACTERIAL Synechococcus sp. PCC 7001 PCC 7001 Cyanobium sp. PCC 7001 PCC 7001 Gi01409 Genome incomplete Public Univ of Massachusetts, J. Craig Venter Institute Moore Foundation Lilly E http://www.umassd.edu/cas/biology/ Marine Microbial Initiative (MMI), Environmental 180281 19301 000866_GCAT 3346 0 NZ_ABSE00000000 Draft 2832 0 68 USA Intertidal waters off Long Island in 1961 1961 USA Intertidal waters off Long Island in 1961 40.74179 -72.915 Facultative Mesophile gram- Free living None Marine Motile Photoautotroph Bacteria Cyanobacteria Chroococcales Cyanothece Cyanothece sp. CCY 0110 BACTERIAL Cyanothece sp. CCY 0110 CCY 0110 Cyanothece sp. CCY 0110 Gi01410 Genome incomplete Public NIOO, J. Craig Venter Institute Moore Foundation Stal L http://www.nioo.nl/PPAGES/lstal/ CY Marine Microbial Initiative (MMI), Environmental 391612 18951 000867_GCAT 640612201 NZ_AAXW00000000 Draft 5900 6570 36.7 USA 10m depth from coastal waters off Zanzibar Tanzania 10m depth from coastal waters off Zanzibar -6.14250 39.45778 10 meters Aerobe Coccus-shaped Mesophile gram- Free living Singles None Marine Nonmotile Nitrogen fixation Bacteria Cyanobacteria Chroococcales Cyanothece BACTERIAL Cyanothece sp. BH68, ATCC 51142 BH68, ATCC 51142 Cyanothece sp. ATCC 51142 ATCC 51142 Gc00760 Gi01509 Genome Complete and Published Public Purdue Univ, Washington Univ Pakrasi H http://www.sysbio.wustl.edu/pakrasi/people/himadrip.php cce 2008-04-01 Unpublished Environmental 43989 20319 000868_GCAT 271092 641522622 NC_010546, NC_010547 Complete CRITICA 1.05, Glimmer 2.13 5500 5357 2 4 40 USA "Intertidal sands near Port Aransas, Gulf of Mexico in Texas" USA Gulf of Mexico in Texas 27.816743 -97.074951 Facultative Coccus-shaped Mesophile gram- Free living Singles None Fresh water Nonmotile Nitrogen fixation Photoheterotroph Bacteria Cyanobacteria Chroococcales Cyanothece BACTERIAL Cyanothece sp. PCC 7424 PCC 7424 Cyanothece sp. PCC 7424 PCC 7424, ATCC 29155 Gc00904 Gi01595 Genome Complete and Published Public DOE Joint Genome Institute DOE Pakrasi H pakrasi@biology2.wustl.edu PCC 2008-12-17 Unpublished Environmental 65393 20479 000869_GCAT 3157 643348533 NC_011729 Complete 5942 6151 1 6 38 USA Rice fields in Senegal Senegal Rice fields in Senegal Anaerobe Coccus-shaped Mesophile gram- Free living Singles None Fresh water Nonmotile Nitrogen fixation Autotroph Bacteria Cyanobacteria Chroococcales Cyanothece BACTERIAL Cyanothece sp. PCC 7425 PCC 7425 Cyanothece sp. PCC 7425 PCC 7425, ATCC 29141 Gc00933 Gi01596 Genome Complete and Published Public DOE Joint Genome Institute DOE Pakrasi H pakrasi@biology2.wustl.edu Cyan7425 2009-01-09 Unpublished Environmental 395961 28337 000870_GCAT 643348534 NC_011884 Complete 5374 4966 1 3 48.6 USA Rice fields in Senegal Senegal Rice fields in Senegal Anaerobe Coccus-shaped Mesophile gram- Free living Singles None Fresh water Nonmotile Nitrogen fixation Phototroph, Autotroph Bacteria Cyanobacteria Chroococcales Cyanothece Cyanothece sp. PCC 7822 BACTERIAL Cyanothece sp. PCC 7822 PCC 7822 Cyanothece sp. PCC 7822 PCC 7822 Gi01597 Genome incomplete Public DOE Joint Genome Institute DOE Pakrasi H Pakrasi@wustl.edu Cyan7822DRAFT Environmental 497965 28535 000871_GCAT 356043 642791608 NZ_ABVE00000000 Draft 5725 5266 40 USA "Rice fields in Cuttack, Orissa, India" India Rice fields in Cuttack, Orissa, India 20.237556 84.270018 Aerobe Coccus-shaped Mesophile gram- Free living Singles None Fresh water Nonmotile Nitrogen fixation Bacteria Cyanobacteria Chroococcales Cyanothece BACTERIAL Cyanothece sp. PCC 8801 PCC 8801 Cyanothece sp. PCC 8801 PCC 8801 Gc00905 Gi01598 Genome Complete and Published Public DOE Joint Genome Institute DOE Pakrasi H pakrasi@biology2.wustl.edu PCC 2008-12-17 Unpublished Environmental 41431 20503 000872_GCAT 35028 643348535 NC_011726 Complete 4679 4455 1 3 39 USA Rice fields in india and Taiwan Taiwan Rice fields in india and Taiwan Aerobe Coccus-shaped Mesophile gram- Free living Singles None Fresh water Nonmotile Nitrogen fixation Bacteria Cyanobacteria Chroococcales Cyanothece BACTERIAL Cyanothece sp. PCC 8802 PCC 8802 Cyanothece sp. PCC 8802 PCC 8802 Gc01095 Gi01599 Genome Complete and Published Public DOE Joint Genome Institute DOE Pakrasi H pakrasi@biology2.wustl.edu Cyan8802DRAFT 2009-08-26 Unpublished Environmental 395962 28339 000873_GCAT 642791614 NC_013161 Complete Level 6: Finished 4669 4561 1 4 39 USA Soil, rice field (during spring), Ping-Tong district, Southern Taiwan Taiwan Rice fields in southern Taiwan 22.760875 120.637579 Aerobe Coccus-shaped Mesophile gram- Free living Singles None Fresh water Nonmotile Nitrogen fixation Bacteria Cyanobacteria Chroococcales BACTERIAL Cyanothece sp. ATCC 51472 ATCC 51472 ATCC 51472 Gi01600 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Environmental 43988 000874_GCAT 0 In progress 5500 0 0 USA marine environment near the coast of Texas USA marine environment near the coast of Texas Aerobe Coccus-shaped Mesophile gram- Free living Singles None Fresh water Nonmotile Nitrogen fixation Heterotroph Bacteria Chloroflexi Chloroflexi (class) Chloroflexales Dehalobium Dehalobium chlorocoercia BACTERIAL Dehalobium chlorocoercia DF-1 DF-1 Dehalobium chlorocoercia DF-1 Gi01411 Genome incomplete Public Univ of Maryland, J. Craig Venter Institute Moore Foundation Sowers K http://www.umbi.umd.edu/~comb/faculty/sowers/sowers.html Marine Microbial Initiative (MMI), Environmental 391609 19303 000875_GCAT 0 0 0 0 USA 3m depth from Coast of Charleston South Carolina USA 3m depth from Coast of Charleston South Carolina 32.78861 -79.96639 3 meters Mesophile Free living None Marine PCB degrading Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter sp. SD-21 BACTERIAL Erythrobacter sp SD-21 SD-21 Erythrobacter sp. SD-21 Gi01412 Genome incomplete Public UCSD, J. Craig Venter Institute Moore Foundation Tebo B http://tebolab.ucsd.edu/ ED Marine Microbial Initiative (MMI), Environmental 161528 19305 000876_GCAT 43392 640963034 NZ_ABCG00000000 Draft 2969 3036 63 USA 10m depth at San Diego Bay surface sediments USA 10m depth at San Diego Bay surface sediments 32.70000 -117.16667 10 meters Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Sediment, Marine 25 - 30 Motile Phototroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio shilonii BACTERIAL Vibrio shilonii AK1 AK1 Vibrio shilonii AK1 ATCC BAA-91, DSM 13774 Yes Gi01413 Genome incomplete Public Tel Aviv Univ, J. Craig Venter Institute Moore Foundation Rosenberg E http://www.tau.ac.il/lifesci/departments/biotech/members/rosenberg/rosenberg.html VSAK Coral Pathogen, Marine Microbial Initiative (MMI), Environmental 391591 19397 000877_GCAT 239416 640963038 NZ_ABCH00000000 Draft 5698 5513 44 USA 3m depth at Bleached coral Mediterreanean 3m depth at Bleached coral Mediterreanean 32.49139 34.88611 3 meters Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Coral reef bleaching Marine Motile Pathogen Heterotroph Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Cyclobacteriaceae Algoriphagus Algoriphagus sp. PR1 BACTERIAL Algoriphagus sp PR1 PR1 Gi01414 Genome incomplete Public J. Craig Venter Institute, Univ of California, Berkeley Moore Foundation King N http://mcb.berkeley.edu/labs/king/ Marine Microbial Initiative (MMI), Environmental 388413 18947 000878_GCAT 278695 640612202 NZ_AAXU00000000 Draft 12 4776 4257 39 Sanger USA isolated from a choanoflagellate culture Aerobe Mesophile gram- Free living None Marine Nonmotile Heterotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Phyllobacteriaceae Hoeflea Hoeflea phototrophica BACTERIAL Hoeflea phototrophica DFL-43 DFL-43 Hoeflea phototrophica DFL-43 DSM 17068 Yes Gi01415 Genome incomplete Public GBF, J. Craig Venter Institute Moore Foundation Wagner-Dobler I http://www.gbf.de/kom HPDFL Marine Microbial Initiative (MMI), Environmental 411684 19311 000879_GCAT 253557 641380435 NZ_ABIA00000000 Draft 4458 4460 59 USA Toxic dinoflagellate Prorocentrum lima Germany Toxic dinoflagellate Prorocentrum lima 54.13333 7.86667 Prorocentrum lima Aerobe Rod-shaped Mesophile gram- Free living None Marine 31 Motile Bacteria Aquificae Aquificae (class) Aquificales Aquificaceae Hydrogenivirga Hydrogenivirga sp. 128-5-R1-1 BACTERIAL Hydrogenivirga sp 128-5-R1-1 128-5-R1-1 Hydrogenivirga sp. 128-5-R1-1 Gi01416 Genome incomplete Public Portland State Univ, J. Craig Venter Institute Moore Foundation Reysenbach A-L http://www.pdx.edu/profiles/7865/ HG Marine Microbial Initiative (MMI), Environmental 392423 19313 000880_GCAT 163239 641380441 NZ_ABHJ00000000 Draft 3038 3931 43 USA Lau Basin hydrothermal vent area in the Pacific Ocean at a depth of 2200 meters Lau Basin hydrothermal vent area in the Pacific Ocean at a depth of 2200 meters -20.752222 176.184722 2200 meters Anaerobe Rod-shaped Mesophile gram- Free living None Fresh water, Hydrothermal vent, Deep sea Motile Hydrogen oxidizer, Sulfur oxidizer Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Kordia Kordia algicida BACTERIAL Kordia algicida OT-1 OT-1 Kordia algicida OT-1 Gi01417 Genome incomplete Public J. Craig Venter Institute, KORDI Moore Foundation Kim S-J http://www.kordi.re.kr/eng/index.asp KAOT1 Marine Microbial Initiative (MMI), Environmental 391587 19315 000881_GCAT 247959 641380434 NZ_ABIB00000000 Draft 5019 4641 34 USA 1m depth at Masan Bay in South Sea Korea Korea 1m depth at Masan Bay in South Sea Korea 35.16667 128.58333 1 meter Aerobe Rod-shaped Mesophile gram- Free living None Marine Nonmotile Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Limnobacter Limnobacter sp. MED105 BACTERIAL Limnobacter sp MED105 MED105 Limnobacter sp. MED105 Gi01418 Genome incomplete Public Kalmar Univ, J. Craig Venter Institute Moore Foundation Pinhassi J http://halia.hik.se/start.jsp?page=members/jarone%20pinhassi LMED105 Marine Microbial Initiative (MMI), Environmental 391597 19317 000882_GCAT 253392 640963026 NZ_ABCT00000000 Draft 3390 3321 52 Sanger USA "Surface waters from Eeast Mediterranean Sea (32.81N, 34.69E)" Eeast Mediterranean Sea 32.81 34.69 Surface Rod-shaped Mesophile gram- Free living None Surface water, Marine Motile Bacteria Thermotogae Thermotogae (class) Thermotogales Thermotogaceae Marinitoga Marinitoga piezophila BACTERIAL Marinitoga piezophila KA3 KA3 Marinitoga piezophila KA3 JCM 11233, DSM 14283 Yes Gi01419 Genome incomplete Public J. Craig Venter Institute Moore Foundation Bartlett D http://sio.ucsd.edu/rab/act_detail.cfm?state=%25(%5E%23)T%3C0%20%0A Marine Microbial Initiative (MMI), Environmental 443254 19319 000883_GCAT 0 NZ_ABXR00000000 Draft 1809 0 46 USA deep-sea hydrothermal vent chimney at a depth of 2630 meters on the East-Pacific Rise deep-sea hydrothermal vent chimney at a depth of 2630 meters on the East-Pacific Rise 12.13333 -103.93333 2630 meters Anaerobe Rod-shaped Nonsporulating Thermophile gram- Free living None Deep sea, Hydrothermal vent, Marine 65 Motile Sulfur reducer, Piezophile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Marinobacter Marinobacter algicola BACTERIAL Marinobacter algicola DG893 DG893 Marinobacter algicola DG893 NCIMB 14009, DSM 16394 Yes Gi01420 Genome incomplete Public SAMS, J. Craig Venter Institute Moore Foundation Green D http://www.sams.ac.uk/index.htm MDG Marine Microbial Initiative (MMI), Environmental 443152 19321 000884_GCAT 239795 640963027 NZ_ABCP00000000 Draft 4413 4232 57 USA Yellow Sea in Korea in 1998 1998 Korea Yellow Sea in Korea 36.00000 123.00000 Aerobe Rod-shaped Nonsporulating Mesophile Halophile gram- Free living Gymnodinium catenatum None Host, Marine 25 - 30 Motile Hydrocarbon degrading Heterotroph Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Marinobacter Marinobacter sp. ELB17 BACTERIAL Marinobacter sp ELB17 ELB17 Marinobacter sp. ELB17 Gi01421 Genome incomplete Public Princeton Univ, J. Craig Venter Institute Moore Foundation Ward B http://www.eeb.princeton.edu/FACULTY/Ward/Ward.html MELB Marine Microbial Initiative (MMI), Environmental 270374 18955 000885_GCAT 211138 640612205 NZ_AAXY00000000 Draft 4893 4961 54 USA Chemocline waters of a permanently ice-covered lake in the Taylor Valley in Antarctica Chemocline waters of a permanently ice-covered lake in the Taylor Valley in Antarctica -77.00000 -168.00000 17 meters Facultative Rod-shaped Nonsporulating Psychrophile gram- Free living None Marine 12 - 15 Motile Denitrifying Heterotroph Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Piscirickettsiaceae Methylophaga Methylophaga sp. DMS010 BACTERIAL Methylophaga sp DMS010 DMS010 Methylophaga sp. DMS010 Gi01422 Genome incomplete Public Univ of Warwick, J. Craig Venter Institute Moore Foundation Schaefer H http://www2.warwick.ac.uk/fac/sci/bio/ Marine Microbial Initiative (MMI), Environmental 392484 19323 000886_GCAT 226125 0 NZ_ABXT00000000 Draft 3018 0 46 USA Emiliania huxleyi Emiliania huxleyi Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Marine Motile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micrococcaceae Micrococcus Micrococcus luteus BACTERIAL Micrococcus luteus Fleming NCTC 2665 Fleming NCTC 2665 Micrococcus luteus NCTC 2665 NCTC 2665, CN 3475, DSM 20030, ATCC 15307 Yes Gc01033 Gi01554 Genome Complete and Published Public DOE Joint Genome Institute DOE Greenblatt C greenbl@cc.huji.ac.il Mlut 2009-06-12 Unpublished Bioremediation, Environmental, Biotechnological 465515 20655 000887_GCAT 641736168 NC_012803 Complete Level 6: Finished 2501 2345 1 0 72.9 USA Originally isolated by Alexander Fleming in 1929 as Micrococcus lysodeikticus 1929 Originally isolated by Alexander Fleming in 1929 as Micrococcus lysodeikticus Aerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Tetrads None Soil Motile Metal resistant Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micrococcaceae Micrococcus BACTERIAL Microcoleus vaginatus FGP-2 FGP-2 Gi02012 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Environmental 1270 002641_GCAT 110845 0 0 0 0 USA Mesophile gram+ Free living None Soil, Desert Soil Nitrogen fixation Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium sp. Spyr1 BACTERIAL Mycobacterium sp. Spyr1 Spyr1 Mycobacterium sp. Spyr1 Gi02013 Genome incomplete Public Univ of Ioannina, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 278137 28521 002642_GCAT 144250 0 Draft 0 0 66 USA "creosote contaminated site near Ioannina, Epirus, Greece" Greece Ioannina, Epirus, Greece 39.674495 20.840141 Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles None Soil, Creosote-contaminated soil Nonmotile PAH-degrading Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio BACTERIAL Vibrio furnissii VFA VFA ATCC 35016 Yes Gi02014 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Medical, Human Pathogen 29494 002643_GCAT 9176 0 0 0 0 USA Human feces Human feces Homo sapiens Gastrointestinal tract Feces Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Cerebritis, Cellulitis, Diarrhea Host, Human intestinal microflora Motile Pathogen Heterotroph Bacteria Cyanobacteria Oscillatoriales Microcoleus Microcoleus chthonoplastes BACTERIAL Microcoleus chthonoplastes PCC 7420 PCC 7420 Microcoleus chthonoplastes PCC 7420 PCC 7420 Gi01423 Genome incomplete Public J. Craig Venter Institute, Institut Pasteur Moore Foundation Tandeau de Marsac N http://www.pasteur.fr/recherche/banques/PCC/ Marine Microbial Initiative (MMI), Environmental 118168 19325 000888_GCAT 218949 0 NZ_ABRS00000000 Draft 8651 0 45 USA Salt marsh in Woods Hole Massachusetts USA Salt marsh in Woods Hole Massachusetts 41.51667 -70.68333 Filament-shaped Mesophile gram- Free living None Salt marsh, Marine Motile Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriales bacterium ALC-1 BACTERIAL Flavobacteriales sp ALC-1 ALC-1 Flavobacteriales bacterium ALC-1 Gi01424 Genome incomplete Public UCSD, J. Craig Venter Institute Moore Foundation Azam F http://sio.ucsd.edu/rab/act_detail.cfm?state=%25)%3EK-TLL%20%0A FBALC1 Marine Microbial Initiative (MMI), Environmental 391603 19307 000889_GCAT 255110 641380439 NZ_ABHI00000000 Draft 3825 3550 32 USA Scripps Pier La Jolla CA USA Scripps Pier La Jolla CA 32.85000 -117.25000 Aerobe Rod-shaped Mesophile gram- Free living None Marine Motile Algicidal Heterotroph Bacteria Verrucomicrobia Verrucomicrobiae Verrucomicrobiales BACTERIAL Verrucomicrobiales sp DG1235 DG1235 Verrucomicrobiae bacterium DG1235 Gi01425 Genome incomplete Public SAMS, J. Craig Venter Institute Moore Foundation Hart M http://www.sams.ac.uk/index.htm Marine Microbial Initiative (MMI), Environmental 382464 19391 000890_GCAT 0 NZ_ABSI00000000 Draft 5769 0 54 USA Bacterial microflora of the marine dinoflagellate Scrippseilla trochidea Isolated in Scotland from a clonal culture of the dinoflagellate Scrippsiella trochoidea. S. trochoidea was isolated in Plymouth harbour, United Kingdom United Kingdom Bacterial microflora of the marine dinoflagellate Scrippseilla trochidea 50.56667 -4.23333 Aerobe Coccus-shaped Mesophile gram- Symbiotic Scrippseilla trochidea None Marine Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacterales bacterium GD 1 BACTERIAL Campylobacterales sp GD 1 GD 1 Campylobacterales bacterium GD 1 Gi01426 Genome incomplete Public J. Craig Venter Institute, IOW Moore Foundation Labrenz M http://www.io-warnemuende.de/ Marine Microbial Initiative (MMI), Environmental 439483 19295 000891_GCAT 0 NZ_ABXD00000000 Draft 2939 0 33 USA Gotland Deep, Baltic Sea, pelagic redoxcline of the Baltic Sea 215 m Anaerobe Mesophile gram- Free living None Marine Chemolithoautotroph Bacteria Proteobacteria Gammaproteobacteria marine gamma proteobacterium HTCC2080 BACTERIAL Marine gamma proteobacterium sp HTCC2080 HTCC2080 marine gamma proteobacterium HTCC2080 HTCC2080 Gi01427 Genome incomplete Public J. Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni S http://www.mcb.oregonstate.edu/giovannoni/ MGP Marine Microbial Initiative (MMI), Environmental 247639 18487 000892_GCAT 96871 639857036 NZ_AAVV00000000 Draft 3576 3265 51.8 Sanger USA 10m depth from Coastal Pacific Ocean Newport Oregon USA 10m depth from Coastal Pacific Ocean Newport Oregon 44.650749 -124.064441 10 meters Mesophile gram- Free living None Marine, Coastal Bacteria Proteobacteria Gammaproteobacteria gamma proteobacterium HTCC5015 BACTERIAL gamma proteobacterium sp HTCC5015 HTCC5015 gamma proteobacterium HTCC5015 HTCC5015 Gi01429 Genome incomplete Public J. Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni S http://www.mcb.oregonstate.edu/giovannoni/ Marine Microbial Initiative (MMI), Environmental 391615 19309 000894_GCAT 0 NZ_ABSJ00000000 Draft 2612 0 54 USA Surface waters from Sargasso sea Surface waters from Sargasso sea Surface Mesophile gram- Free living None Fresh water, Surface water, Marine Bacteria Proteobacteria Gammaproteobacteria Oceanospirillales Oceanospirillales bacterium 'Osedax endosymbiont' BACTERIAL Oceanospirillales sp Osedax endosymbiont Osedax endosymbiont Oceanospirillales bacterium 'Osedax endosymbiont' Gi01430 Genome incomplete Public J. Craig Venter Institute, CalTech Moore Foundation Goffredi S http://www.caltech.edu/ Marine Microbial Initiative (MMI), Environmental 439485 19329 000895_GCAT 0 0 0 0 USA symbionts of polychaete worm, Osedax USA symbionts of polychaete worm, Osedax 36.00000 -122.13333 Mesophile gram- Symbiotic Endosymbiotic intracellular Ocedax None Host Symbiont Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionales bacterium SWAT-3 BACTERIAL Vibrionales sp SWAT-3 SWAT-3 Vibrionales bacterium SWAT-3 Gi01431 Genome incomplete Public UCSD, J. Craig Venter Institute Moore Foundation Azam F http://sio.ucsd.edu/rab/act_detail.cfm?state=%25)%3EK-TLL%20%0A VSWAT Marine Microbial Initiative (MMI), Environmental 391574 19399 000896_GCAT 640963044 NZ_AAZW00000000 Draft 5830 5594 44 USA Scripps Pier USA Scripps Pier 32.85 -117.25 Mesophile gram- Free living None Marine Nonmotile Bacteria Proteobacteria Gammaproteobacteria Alteromonadales BACTERIAL Pseudoalteromonas sp. TW-7 TW-7 Alteromonadales bacterium Alteromonadales bacterium TW-7 Gi01432 Genome incomplete Public UCSD, J. Craig Venter Institute Moore Foundation Azam F http://sio.ucsd.edu/rab/act_detail.cfm?state=%25)%3EK-TLL%20%0A ATW Marine Microbial Initiative (MMI), Environmental 156578 18465 000897_GCAT 37299 639857033 NZ_AAVS00000000 Draft 4104 3946 39.7 Sanger USA coastal, off Scripps, detritus prepared from the diatom Talassiosira weissflogii USA coastal, off Scripps, detritus prepared from the diatom Talassiosira weissflogii 32.85000 -117.25000 Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Marine Motile Bacteria Proteobacteria Betaproteobacteria Methylophilales Methylophilales bacterium HTCC2181 BACTERIAL Methylophilales sp. HTCC2181 (OM43 clade) HTCC2181 (OM43 clade) Methylophilales bacterium HTCC2181 Gi01433 Genome complete Public J. Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni S http://www.mcb.oregonstate.edu/giovannoni/ MB2181 Marine Microbial Initiative (MMI), Environmental 383631 18317 000898_GCAT 639857020 NZ_AAUX00000000 Complete Glimmer 2 1304 1413 37.9 USA Surface waters 5 miles off Newport, Oregon USA Newport, Oregon 44.650749 -124.064441 0 meters Mesophile gram- Free living None Coastal, Marine, Fresh water, Fresh water Methylotroph Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacterales bacterium HTCC2150 BACTERIAL Rhodobacterales sp HTCC2150 (RCA clade) HTCC2150 (RCA clade) Rhodobacterales bacterium HTCC2150 HTCC2150 Gi01434 Genome incomplete Public J. Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni S http://www.mcb.oregonstate.edu/giovannoni/ RB Marine Microbial Initiative (MMI), Environmental 388401 18973 000899_GCAT 640612203 NZ_AAXZ00000000 Draft 3582 3749 49 USA Surface waters of Coastal Pacific Ocean Newport Oregon USA Surface waters of Coastal Pacific Ocean Newport Oregon 44.650749 -124.064441 0 meters Mesophile gram- Free living None Coastal, Surface water, Marine Bacteria Proteobacteria Alphaproteobacteria alpha proteobacterium BAL199 BACTERIAL alpha proteobacterium sp. BAL199 BAL199 alpha proteobacterium BAL199 Gi01435 Genome incomplete Public Kalmar Univ, J. Craig Venter Institute Moore Foundation Hagstrom A ake.hagstrom@hik.se http://halia.hik.se/start.jsp?page=members/ake%20hagstrom BAL Marine Microbial Initiative (MMI), Environmental 331869 19281 000900_GCAT 641380442 NZ_ABHC00000000 Draft 6102 6233 65 USA 3m depth of Baltic proper Sweden 3m depth of Baltic proper 58.58778 18.24667 3 meters Mesophile gram- Free living None Marine Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteria bacterium BAL38 BACTERIAL Flavobacteria sp BAL38 BAL38 Flavobacteria bacterium BAL38 Gi01436 Genome incomplete Public Kalmar Univ, J. Craig Venter Institute Moore Foundation Hagstrom A http://halia.hik.se/start.jsp?page=members/ake%20hagstrom FBBAL Marine Microbial Initiative (MMI), Environmental 391598 18953 000901_GCAT 215612 640612204 NZ_AAXX00000000 Draft 2803 2701 31 Sanger USA 4m depth of Baltic proper 4m depth of Baltic proper 63.51611 19.81583 4 meters Aerobe Rod-shaped Mesophile gram- Free living None Fresh water Motile Heterotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Rhodoferax Rhodoferax sp. BAL47 BACTERIAL Rhodoferax sp BAL47 BAL47 Rhodoferax sp. BAL47 Gi01437 Genome incomplete Public Kalmar Univ, J. Craig Venter Institute Moore Foundation Hagstrom A http://halia.hik.se/start.jsp?page=members/ake%20hagstrom Marine Microbial Initiative (MMI), Environmental 443151 19351 000902_GCAT 0 0 0 0 USA 3m depth of Baltic proper Sweden 3m depth of Baltic proper 63.30 19.48 3 meters Mesophile gram- Free living None Marine Bacteria Bacteroidetes unidentified eubacterium SCB49 BACTERIAL Undescribed sp SCB49 SCB49 unidentified eubacterium SCB49 Gi01438 Genome incomplete Public Kalmar Univ, J. Craig Venter Institute Moore Foundation Hagstrom A http://halia.hik.se/start.jsp?page=members/ake%20hagstrom SCB Marine Microbial Initiative (MMI), Environmental 50743 19389 000903_GCAT 257785 640963037 NZ_ABCO00000000 Draft 3214 3040 34 USA 0.5m depth of Southern California Bight USA 0.5m depth of Southern California Bight 32.86694 -117.2575 0.5 meters Mesophile gram- Free living None Marine, Fresh water Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter sp. BAL39 BACTERIAL Pedobacter sp BAL39 BAL39 Pedobacter sp. BAL39 Gi01439 Genome incomplete Public Kalmar Univ, J. Craig Venter Institute Moore Foundation Hagstrom A http://halia.hik.se/start.jsp?page=members/ake%20hagstrom PBAL Marine Microbial Initiative (MMI), Environmental 391596 19337 000904_GCAT 640963036 NZ_ABCM00000000 Draft 5788 5227 45 USA 4m depth of Baltic proper 4m depth of Baltic proper 63.51611 19.81583 4 meters Rod-shaped Nonsporulating Mesophile gram- Free living None Marine Nonmotile Nitrogen fixation Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Oceanibulbus Oceanibulbus indolifex BACTERIAL Oceanibulbus indolifex HEL-45 HEL-45 Oceanibulbus indolifex HEL-45 NCIMB 13983, DSM 14862 Yes Gi01440 Genome incomplete Public GBF, J. Craig Venter Institute Moore Foundation Wagner-Dobler I http://www.gbf.de/kom OIHEL Marine Microbial Initiative (MMI), Environmental 391624 19327 000905_GCAT 641380424 NZ_ABID00000000 Draft 4105 4251 59 USA 10m depth at 3 km off the coast of Helgoland in the North Sea Germany 10m depth at 3 km off the coast of Helgoland in the North Sea 54.13333 7.86667 10 meters Aerobe Rod-shaped Mesophile gram- Free living None Marine 25 - 30 Nonmotile Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Octadecabacter Octadecabacter antarcticus BACTERIAL Octadecabacter antarcticus 307 307 Octadecabacter antarcticus 307 Gi01441 Genome incomplete Public ICBM, J. Craig Venter Institute Moore Foundation Brinkhoff T http://www.icbm.de/ Marine Microbial Initiative (MMI), Environmental 391626 19333 000906_GCAT 5690 0 NZ_ABSH00000000 Draft 4891 0 54 USA McMurdo Sound Antarctica "McMurdo Sound, Antarctica (77? 53' S, 166? 35'E)" -77.534 166.354 Psychrophile gram- Free living None Fresh water Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Octadecabacter Octadecabacter antarcticus BACTERIAL Octadecabacter antarcticus 238 238 Octadecabacter antarcticus 238 Gi01442 Genome incomplete Public ICBM, J. Craig Venter Institute Moore Foundation Brinkhoff T http://www.icbm.de/ Marine Microbial Initiative (MMI), Environmental 391616 19331 000907_GCAT 238 0 NZ_ABSK00000000 Draft 5368 0 55 USA 350km offshore off Deadhors, Alaska USA "350 km offshore off Deadhorse, Alaska (73? 01'N, 148? 31 'W)" 73.016667 -148.516667 Psychrophile gram- Free living None Marine, Fresh water Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales BACTERIAL Rhodobacterales sp HTCC2255 (OM42 clade) HTCC2255 (OM42 clade) alpha proteobacterium HTCC2255 HTCC2255 Gi01443 Genome incomplete Public Oregon State Univ, J. Craig Venter Institute Moore Foundation Giovannoni SJ steve.giovannoni@oregonstate.edu http://mcb.science.oregonstate.edu/giovannoni/people/people.htm OM Marine Microbial Initiative (MMI), Environmental 367336 17677 000908_GCAT 639857003 NZ_AATR00000000 Draft 4812 4660 38.9 Sanger USA Coastal Pacific Ocean Newport Oregon at a depth of 10 meters USA Coastal Pacific Ocean Newport Oregon at a depth of 10 meters 10 meters Mesophile gram- Free living None Marine, Coastal Bacteria Proteobacteria Deltaproteobacteria Myxococcales Nannocystaceae Plesiocystis Plesiocystis pacifica BACTERIAL Plesiocystis pacifica SIR-1 SIR-1 Plesiocystis pacifica SIR-1 Gi01444 Genome incomplete Public Univ of Georgia, J. Craig Venter Institute Moore Foundation Shimkets L http://www.uga.edu/mib/people/shimkets.htm PPSIR Marine Microbial Initiative (MMI), Environmental 391625 19341 000909_GCAT 248001 640963030 NZ_ABCS00000000 Draft 10585 8617 71 USA Sandy beach on Iriomote-jima Island Japan Japan Sandy beach on Iriomote-jima Island Japan 20.00000 116.00000 Aerobe Rod-shaped Mesophile gram- Free living None Marine 28 - 30 Motile Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus MIT9202 MIT9202 Prochlorococcus marinus str. MIT 9202 Gi01445 Genome incomplete Public MIT, J. Craig Venter Institute Moore Foundation Chisholm P http://web.mit.edu/chisholm/www/ Marine Microbial Initiative (MMI), Environmental 93058 19343 000910_GCAT 3352 0 NZ_ACDW00000000 Draft 6 1690 0 31 USA 79m depth in South Pacific Ocean South Pacific Ocean -12.00000 -145.41667 79 meters Oval-shaped Mesophile gram- Free living None Marine Nonmotile Photosynthetic Archaea Crenarchaeota Thermoprotei Desulfurococcales Pyrodictiaceae Pyrodictium Pyrodictium abyssi ARCHAEAL Pyrodictium abyssi DSM 6158 DSM 6158 Pyrodictium abyssi DSM 6158 DSM 6158 Yes Gi01446 Genome incomplete Public Univ of Massachusetts Amherst, J. Craig Venter Institute Moore Foundation Holden J http://www.bio.umass.edu/micro/faculty/holden.html Marine Microbial Initiative (MMI), Environmental 391605 19347 000911_GCAT 893 0 0 0 0 USA hydrothermal sediments from Guaymas Basin between Mexico and Baja California USA hydrothermal sediments from Guaymas Basin between Mexico and Baja California 27.00000 -111.40000 2000 meters Anaerobe Disc-shaped Thermophile gram- Free living None Deep sea, Hydrothermal vent, Marine 97 - 105 Heterotroph Archaea Euryarchaeota Aciduliprofundum Aciduliprofundum boonei ARCHAEAL Aciduliprofundum boonei T469 T469 Aciduliprofundum boonei T469 Gi01447 Genome incomplete Public Portland State Univ, J. Craig Venter Institute Moore Foundation Reysenbach AL http://alrlab.pdx.edu/ Marine Microbial Initiative (MMI), Environmental 439481 19277 000912_GCAT 161417 0 NZ_ABSD00000000 Draft 2973 0 39 USA Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge depth 3650m Mariner Vent field -22.16889 -176.60028 1920 meters Facultative Coccus-shaped Thermophile gram- Free living None Deep sea, Hydrothermal vent, Marine 70 Motile Acidophile Chemolithoautotroph Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Roseobacter Roseobacter sp. AzwK-3b BACTERIAL Roseobacter sp. AzwK-3b AzwK-3b Roseobacter sp. AzwK-3b Gi01449 Genome incomplete Public Stanford Univ, J. Craig Venter Institute Moore Foundation Frances C http://pangea.stanford.edu/~caf/ RAZWK Biotechnological, Marine Microbial Initiative (MMI), Environmental 351016 19361 000914_GCAT 140816 640963029 NZ_ABCR00000000 Draft 4209 4239 62 USA Elkhorn Slough an estuary of Monterey Bay USA Elkhorn Slough an estuary of Monterey Bay 36.84262 -121.74701 Aerobe Rod-shaped Mesophile gram- Free living None Marine Motile Phototroph, Photosynthetic Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Roseobacter Roseobacter sp. GAI101 BACTERIAL Roseobacter sp. GAI101 GAI101 Roseobacter sp. GAI101 Gi01450 Genome incomplete Public SDSU, J. Craig Venter Institute Moore Foundation Edwards R http://www.sci.sdsu.edu/~smaloy/CMS/ Biotechnological, Marine Microbial Initiative (MMI), Environmental 391589 30723 000915_GCAT 0 NZ_ABXS00000000 Draft 7.47x 4514 0 58 USA Coastal seawater collected off Georgia in December 1997 1997 USA Coastal seawater collected off Georgia in December 1997 Aerobe Rod-shaped Mesophile gram- Free living None Marine, Coastal Motile Photosynthetic, Phototroph Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Phaeobacter Phaeobacter gallaeciensis BACTERIAL Phaeobacter gallaeciensis 2.10 2.10 Phaeobacter gallaeciensis 2.10 Gi01451 Genome incomplete Public Univ of New South Wales, J. Craig Venter Institute Moore Foundation Kjelleberg http://www.babs.unsw.edu.au/staff_directory/kjellebergs.html RG Marine Microbial Initiative (MMI), Environmental, Biotechnological 383629 19353 000916_GCAT 641380433 NZ_ABIE00000000 Draft 4157 4071 59 USA Surface of the marine algae Ulva lactuca in Australia Australia Surface of the marine algae Ulva lactuca in Australia Pecten maximus Aerobe Rod-shaped Mesophile gram- None Marine Motile Symbiont Phototroph, Photosynthetic Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Phaeobacter Phaeobacter gallaeciensis BACTERIAL Phaeobacter gallaeciensis BS107 BS107 Phaeobacter gallaeciensis BS107 Gi01686 Genome incomplete Public J. Craig Venter Institute Moore Foundation Brinkhoff T t.brinkhoff(Klammeraffe)icbm.de http://www.uni-oldenburg.de/index/lehrende/?ID=1146659675 RGBS Biotechnological, Marine Microbial Initiative (MMI), Environmental 391619 19355 000917_GCAT 246847 641380432 NZ_ABIF00000000 Draft 4231 4194 59 USA Seawater from larval cultures of the scallop Pecten maximus, in A Coruna, Galicia, Spain Spain Seawater from larval cultures of the scallop Pecten maximus, in A Coruna, Galicia, Spain 43.371491 -8.39597 Aerobe Rod-shaped Mesophile gram- None Marine Motile Phototroph, Photosynthetic Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Roseobacter Roseobacter litoralis BACTERIAL Roseobacter litoralis Och 149 Och 149 Roseobacter litoralis Och 149 DSM 6996, ATCC 49566, CIP 104265 Yes Gi01452 Genome incomplete Public ICBM, J. Craig Venter Institute Moore Foundation Brinkhoff T http://www.icbm.de/ RLO Biotechnological, Marine Microbial Initiative (MMI), Environmental 391595 19357 000918_GCAT 641380423 NZ_ABIG00000000 Draft 27 4678 4785 57 USA Seaweed Seaweed Aerobe Rod-shaped Mesophile gram- Free living None Marine Motile Phototroph, Photosynthetic Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Roseobacter Roseobacter sp. SIO BACTERIAL Roseobacter sp. SIO67 SIO67 Roseobacter sp. SIO67 Gi01453 Genome incomplete Public SDSU, J. Craig Venter Institute Moore Foundation Edwards R http://www.sci.sdsu.edu/~smaloy/CMS/ Biotechnological, Marine Microbial Initiative (MMI), Environmental 105179 19359 000919_GCAT 0 0 0 0 USA Seawater off the coast of Georgia USA Seawater off the coast of Georgia Aerobe Rod-shaped Mesophile gram- Free living None Marine Motile Phototroph, Photosynthetic Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Roseobacter Roseobacter sp. CCS2 BACTERIAL Roseobacter sp. CCS2 CCS2 Roseobacter sp. CCS2 Gi01454 Genome incomplete Public Univ of Georgia, J. Craig Venter Institute Moore Foundation Moran MA http://www.marsci.uga.edu/directory/mmoran.htm RCCS Biotechnological, Marine Microbial Initiative (MMI), Environmental 391593 18995 000920_GCAT 640612221 NZ_AAYB00000000 Draft 3497 3738 55.5 USA near Bodega Head County park, California USA near Bodega Head County park, California 38.308333 -123.3 Aerobe Rod-shaped Mesophile gram- Free living None Marine, Coastal Motile Photosynthetic, Phototroph Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Roseobacter Roseobacter sp. SK209-2-6 BACTERIAL Roseobacter sp. SK209-2-6 SK209-2-6 Roseobacter sp. SK209-2-6 Gi01455 Genome incomplete Public Princeton Univ, J. Craig Venter Institute Moore Foundation Ward B http://www.eeb.princeton.edu/FACULTY/Ward/Ward.html RSK Biotechnological, Marine Microbial Initiative (MMI), Environmental 388739 18997 000921_GCAT 208731 640612220 NZ_AAYC00000000 Draft 4600 4671 57 Sanger USA 2500m depth in the Arabian Sea 2500m depth in the Arabian Sea total depth >2500 m, 267 m in the oxygen minimum zone Aerobe Rod-shaped Mesophile gram- Free living None Marine Motile Denitrifying Photosynthetic, Phototroph Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Roseovarius Roseovarius sp. TM1035 BACTERIAL Roseovarius sp. TM1035 TM1035 Roseovarius sp. TM1035 Gi01457 Genome incomplete Public Univ of Maryland, J. Craig Venter Institute Moore Foundation Belas R http://www.umbi.umd.edu/~belas/ RTM Marine Microbial Initiative (MMI), Environmental 391613 19363 000923_GCAT 251266 640963035 NZ_ABCL00000000 Draft 4209 4207 61 USA Pfiesteria piscicida Pfiesteria piscicida Aerobe Rod-shaped Mesophile gram- Free living None Marine Heterotroph Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Sagittula Sagittula stellata BACTERIAL Sagittula stellata E-37 E-37 Sagittula stellata E-37 ATCC 700073 Yes Gi01458 Genome incomplete Public Univ of Georgia, J. Craig Venter Institute Moore Foundation Moran MA http://www.marsci.uga.edu/directory/mmoran.htm SSE Environmental, Marine Microbial Initiative (MMI) 388399 18971 000924_GCAT 640612219 NZ_AAYA00000000 Draft 5261 5166 65 USA Coastal Georgia USA Coastal Georgia Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Marine, Coastal Nonmotile Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Labrenzia Labrenzia alexandrii BACTERIAL Labrenzia alexandrii DFL-11 DFL-11 Labrenzia alexandrii DFL-11 DSM 17067, NCIMB 14079 Yes Gi01459 Genome incomplete Public GBF, J. Craig Venter Institute Moore Foundation Wagner-Dobler I http://www.gbf.de/kom Marine Microbial Initiative (MMI), Environmental 244592 19367 000925_GCAT 94391 0 NZ_ACCU00000000 Draft 25 5501 5284 56 USA toxic dinoflagellates Alexandrium ostenfeldii and Prorocentrum lima Germany 17473266 toxic dinoflagellates Alexandrium ostenfeldii and Prorocentrum lima 54.13333 7.86667 Alexandrium ostenfeldii Aerobe Rod-shaped Mesophile 6 - 9.2 gram- Free living None Marine 26 Motile Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Labrenzia Labrenzia aggregata BACTERIAL Labrenzia aggregata IAM 12614 IAM 12614 Labrenzia aggregata IAM 12614 ATCC 25650 Yes Gi01460 Genome incomplete Public Univ of Maine, J. Craig Venter Institute Moore Foundation King G http://www.umaine.edu/meem/faculty/king.htm SIAM Marine Microbial Initiative (MMI), Environmental 384765 18315 000926_GCAT 175858 639857019 NZ_AAUW00000000 Draft 6561 6446 59.4 Sanger USA Damariscotta River in Maine USA Damariscotta River in Maine unkown Aerobe Rod-shaped Mesophile gram- Free living None Marine Motile Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Stenotrophomonas Stenotrophomonas sp. SKA14 BACTERIAL Stenotrophomonas sp. SKA14 SKA14 Stenotrophomonas sp. SKA14 Gi01461 Genome incomplete Public Univ of Kalmar, J. Craig Venter Institute Moore Foundation Hagstrom A http://halia.hik.se/start.jsp?page=members/ake%20hagstrom Biotechnological, Marine Microbial Initiative (MMI), Environmental 391601 19369 000927_GCAT 0 NZ_ACDV00000000 Draft 4990 0 66 USA 4m depth in Baltic Sea isolated on a Zobell agar plate 4m depth in Baltic Sea 58.94083 11.07944 4 meters Aerobe Rod-shaped Mesophile gram- Free living None Marine Nonfermentative, Nitrogen fixation Bacteria Cyanobacteria Chroococcales Synechococcus BACTERIAL Synechococcus sp. PCC 7335 PCC 7335 Synechococcus sp. PCC 7335 PCC 7335 Gi01462 Genome incomplete Public J. Craig Venter Institute, Institut Pasteur Moore Foundation Tandeau de Marsac N http://www.pasteur.fr/recherche/banques/PCC/ Marine Microbial Initiative (MMI), Environmental 91464 19377 000928_GCAT 3259 0 NZ_ABRV00000000 Draft 38 5964 5622 48 USA Snail shell, intertidal zone, Puerto Penasco, Mexico Mexico Snail shell, intertidal zone, Puerto Penasco, Mexico 31.31667 -113.53333 Facultative Coccus-shaped Mesophile gram- Free living None Marine Motile Nitrogen fixation Photoautotroph Bacteria Cyanobacteria Chroococcales Synechococcus Synechococcus sp. M11.1 BACTERIAL Synechococcus sp. M11.1 M11.1 Synechococcus sp. M11.1 Gi01463 Genome incomplete Public Univ of Oregon, J. Craig Venter Institute Moore Foundation Wood M http://evolution.uoregon.edu/mwood.htm Marine Microbial Initiative (MMI), Environmental 351026 19371 000929_GCAT 0 0 0 0 USA 275m depth in the Gulf of Mexico Mexico 275m depth in the Gulf of Mexico 27.716667 -91.25 275 meters Facultative Coccus-shaped Mesophile gram- Free living None Marine, Deep sea Motile Photoautotroph Bacteria Cyanobacteria Chroococcales Synechococcus Synechococcus sp. M16.17 BACTERIAL Synechococcus sp. M16.17 M16.17 Synechococcus sp. M16.17 Gi01464 Genome incomplete Public Univ of Oregon, J. Craig Venter Institute Moore Foundation Wood M http://evolution.uoregon.edu/mwood.htm Marine Microbial Initiative (MMI), Environmental 351025 19373 000930_GCAT 0 2500 0 0 USA 275m depth in the Gulf of Mexico Mexico 275m depth in the Gulf of Mexico 27.716667 -91.25 275 meters Facultative Coccus-shaped Mesophile gram- Free living None Marine Motile Photoautotroph Archaea Euryarchaeota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus sp. AM4 ARCHAEAL Thermococcus sp. AM4 AM4 Thermococcus sp. AM4 Gi01465 Genome incomplete Public UCSD, J. Craig Venter Institute Moore Foundation Bartlett D http://sio.ucsd.edu/rab/act_detail.cfm?state=%25(%5E%23)T%3C0%20%0A Marine Microbial Initiative (MMI), Environmental 246969 19381 000931_GCAT 99167 0 NZ_ABXN00000000 Draft 2084 0 54 USA 2600m depth in the East Pacific Rise 2600m depth in the East Pacific Rise 12.13333 -103.93333 2600 meters Anaerobe Coccus-shaped Nonsporulating Thermophile gram- Free living None Deep sea, Hydrothermal vent, Marine Motile Archaea Euryarchaeota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus barophilus ARCHAEAL Thermococcus barophilus MP, DSM 11836 MP, DSM 11836 Thermococcus barophilus MP DSM 11836 Yes Gi01466 Genome incomplete Public Prokaria, J. Craig Venter Institute Moore Foundation Marteinsson VT http://www.prokaria.com/default.asp?cat_id=1 Marine Microbial Initiative (MMI), Environmental 391623 19379 000932_GCAT 0 NZ_ABSF00000000 Draft 2059 0 41 USA Chimney wall, Mid-Atlantic Ridge, Snakepit chimney wall, Mid-Atlantic Ridge, Snakepit 23.224118 -44.564984 3550 meters Coccus-shaped Nonsporulating Thermophile gram- Free living None Marine, Deep sea, Hydrothermal vent Motile Barophile Heterotroph Archaea Euryarchaeota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus onnurineus ARCHAEAL Thermococcus onnurineus NA1 NA1 Thermococcus onnurineus NA1 KCTC 10859, JCM 13517 Gc00859 Gi02367 Genome Complete and Published Public KORDI Lee J-H jlee@kordi.re.kr 2008-11-06 J Bacteriology 190, 7491-9 Biotechnological 523850 20773 003095_GCAT 359894 643348580 NC_011529 Complete 2-3Kb, 40Kb, 35Kb Glimmer 1847 1976 1 0 52 Sanger Korea PACMANUS hydrothermal vent sediment at a depth of 1650 meters New Guinea PACMANUS hydrothermal vent sediment at a depth of 1650 meters 1650 meters Anaerobe Coccus-shaped Nonsporulating Hyperthermophile 8.5 gram- Free living None Fresh water 80 Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Aliivibrio Aliivibrio fischeri BACTERIAL Vibrio fischeri MJ11 MJ11 Vibrio fischeri MJ11 Gc00852 Gi01467 Genome Complete and Published Public Univ of Georgia, J. Craig Venter Institute Moore Foundation Stabb E http://www.uga.edu/mib/people/stabb.htm VFMJ11 2008-08-28 Unpublished Environmental, Marine Microbial Initiative (MMI) 388396 19393 000933_GCAT 250163 642555167 NC_011186, NC_011184 Complete 4478 4175 2 1 38 USA Squid light organ in Japan Japan Squid light organ in Japan 34 132 Facultative Rod-shaped Nonsporulating Mesophile gram- Symbiotic Squid Singles None Fresh water 20- 28 Motile Symbiont Heterotroph Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydophila BACTERIAL Chlamydia pneumoniae Gi00137 Genome incomplete Proprietary GENSET Medical, Human Pathogen 83558 000935_GCAT 3006 0 Complete 1230 1069 0 France Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Respiratory infection, Pneumonia, Pharyngitis, Asthma, Heart disease, Bronchitis, Multiple sclerosis Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila pneumoniae BACTERIAL Chlamydia pneumoniae TW-183 TW-183 Gi00138 Genome incomplete Proprietary GPC-AG, Gene Alliance Byk Gulden Medical, Human Pathogen 182082 000936_GCAT 90574 0 Complete 0 0 40 Germany Child's conjunctiva during a trachoma vaccine trial in Taiwan in 1965 1965 Taiwan Child's conjunctiva during a trachoma vaccine trial in Taiwan in 1965 Homo sapiens Child Eye Conjunctiva Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Respiratory infection, Bronchitis, Pharyngitis, Pneumonia Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia BACTERIAL Chlamydia trachomatis L2 L2 Gi00140 Genome incomplete Proprietary GENSET Animal Pathogen, Medical, Human Pathogen 813 000937_GCAT 201854 0 Complete 1038 997 0 France Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Bronchitis, Pharyngitis, Pneumonia, Respiratory infection Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis L2/434/BU L2/434/BU L2 Chlamydia trachomatis 434/Bu ATCC VR902B Gc00712 Gi00818 Genome Complete and Published Public Sanger Institute Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ CTL 2008-01-19 Genome Research 18, 161-71 Animal Pathogen, Medical, Human Pathogen 471472 28583 000938_GCAT 641522614 NC_010287 Complete 1.4-2.2 Kb, 9-12 Kb pUC18, pMAQ1 8x 1038 923 1 1 41.3 Sanger United Kingdom bubo Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Respiratory infection, Pneumonia, Bronchitis, Lymphogranuloma vernerum, Pharyngitis Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia BACTERIAL Chlamydia trachomatis A Gi01854 Genome complete Public Sanger Institute Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Animal Pathogen, Medical, Human Pathogen 813 000939_GCAT 201854 0 Complete 1052 0 0 United Kingdom Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Respiratory infection, Bronchitis, Pharyngitis, Pneumonia Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia BACTERIAL Chlamydia trachomatis B Gi01855 Genome complete Public Sanger Institute Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Animal Pathogen, Medical, Human Pathogen 813 000940_GCAT 201854 0 Complete 1052 0 0 United Kingdom Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Respiratory infection, Bronchitis, Pharyngitis, Pneumonia Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis Jali20 Jali20 B Chlamydia trachomatis Jali20 Gc01002 Gi00139 Genome Complete and Published Public Sanger Institute, Univ of Southampton Wellcome Trust Seth-Smith HM hss@sanger.ac.uk http://www.sanger.ac.uk/Users/parkhill/ JALI 2009-05-18 BMC Genomics 10, 239 Animal Pathogen, Medical, Human Pathogen 580049 32655 000941_GCAT 201854 0 NC_012686 Complete Level 6: Finished 1044 893 1 0 40 United Kingdom clinical strain isolated from the conjunctiva in an active case of trachoma Isolate: B/Jali20/OT clinical strain isolated from the conjunctiva in an active case of trachoma Homo sapiens Patient with trachoma Eye Conjunctiva Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Ocular infection Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia BACTERIAL Chlamydia trachomatis E11023 E11023 Gi01510 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Animal Pathogen, Medical, Human Pathogen 813 000942_GCAT 201854 0 Complete 0 0 0 USA Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Pneumonia, Bronchitis, Pharyngitis Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis Ds2923 Ds2923 Chlamydia trachomatis D(s)2923 Gi01511 Genome incomplete Public DOE Joint Genome Institute, Oregon State Univ DOE Bruce D microbes@cuba.jgi-psf.org Animal Pathogen, Medical, Human Pathogen 573237 32539 000943_GCAT 0 NZ_ACFJ00000000 Complete 100x 1 1042 0 41 Illumina USA non-fusing phenotype strain Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Urogenital infection, Bronchitis, Pharyngitis, Pneumonia Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia BACTERIAL Chlamydia trachomatis G9301 G9301 Gi01512 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Animal Pathogen, Medical, Human Pathogen 813 000944_GCAT 201854 0 Complete 0 0 0 USA Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Pneumonia, Bronchitis, Pharyngitis Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia BACTERIAL Chlamydia trachomatis G9768 G9768 Gi01513 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Animal Pathogen, Medical, Human Pathogen 813 000945_GCAT 201854 0 Complete 0 0 0 USA Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Pneumonia, Bronchitis, Pharyngitis Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila psittaci BACTERIAL Chlamydophila psittaci 6BC 6BC Chlamydophila psittaci Gi00143 Genome incomplete Public J. Craig Venter Institute Animal Pathogen, Medical, Human Pathogen 331636 12519 000946_GCAT 2964 0 0 0 0 USA Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Respiratory infection Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila pneumoniae BACTERIAL Chlamydophila pneumoniae LPCoLN LPCoLN Chlamydophila pneumoniae LPCoLN Gi01649 Genome incomplete Public J. Craig Venter Institute Animal Pathogen, Medical, Human Pathogen 406984 17947 000947_GCAT 309727 0 0 0 0 USA Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Respiratory infection Host Nonmotile Pathogen Bacteria Bacteroidetes Flavobacteria Flavobacteriales Candidatus Sulcia Candidatus Sulcia muelleri BACTERIAL Candidatus Sulcia muelleri Hc Hc Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata) Gi01469 Genome incomplete Public J. Craig Venter Institute SMU Agricultural 374675 16198 000948_GCAT 638341057 NZ_AANL00000000 Draft 146 212 24 Sanger USA Mesophile gram- Symbiotic Blue-Green Sharpshooter None Host Symbiont Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila pecorum BACTERIAL Chlamydophila pecorum E58 E58 Gi01010 Genome incomplete Public J. Craig Venter Institute Animal Pathogen, Medical, Human Pathogen 331635 000949_GCAT 3027 0 0 0 0 USA Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Respiratory infection, Bronchitis, Pharyngitis, Pneumonia Host Nonmotile Pathogen Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Chlorobium Chlorobium ferrooxidans BACTERIAL Chlorobium ferrooxidans DSM 13031 DSM 13031 Chlorobium ferrooxidans DSM 13031 DSM 13031 Yes Gi01610 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org CferDRAFT Biotechnological, Hydrogen production, Energy production 377431 16644 000950_GCAT 171289 638341060 NZ_AASE00000000 Draft 9x 2538 2251 50 Sanger USA Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Chains, Singles None Fresh water 22 - 25 Nonmotile Green sulfur Photosynthetic, Photoautotroph Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Chlorobium Chlorobium limicola BACTERIAL Chlorobium limicola DSM 245 DSM 245 Chlorobium limicola DSM 245 DSM 245 Yes Gc00814 Gi00145 Genome Complete and Published Public DOE Joint Genome Institute DOE Bryant DA dab14@psu.edu Clim 2008-06-04 Unpublished Biotechnological, Hydrogen production, Energy production 290315 12606 000951_GCAT 130684 642555121 NC_010803 Complete 2763 2576 1 0 51.3 USA Gilroy Hot spring Gilroy Hot spring Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Chains, Singles None Hot spring, Fresh water Nonmotile Green sulfur Photosynthetic, Photoautotroph Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeobacteroides BACTERIAL Chlorobium phaeobacteroides BS1 BS1 Chlorobium phaeobacteroides BS1 Gc00816 Gi00147 Genome Complete and Published Public DOE Joint Genome Institute DOE Bryant DA dab14@psu.edu Cphamn1 2008-06-09 Unpublished Biotechnological, Hydrogen production, Energy production 331678 12608 000952_GCAT 134536 642555122 NC_010831 Complete 2736 2611 1 0 48.9 Sanger USA From the chemocline of the Black Sea Black Sea Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Chains, Singles None Marine Nonmotile Nitrogen fixation, Green sulfur Photosynthetic Bacteria Chloroflexi Chloroflexi (class) Chloroflexales Chloroflexaceae Chloroflexus Chloroflexus aurantiacus BACTERIAL Chloroflexus aurantiacus J-10-fl J-10-fl Chloroflexus aurantiacus J-10-fl DSM 635, ATCC 29366 Yes Gc00703 Gi00150 Genome Complete and Published Public DOE Joint Genome Institute, Univ of Puget Sound DOE Bruce D microbes@cuba.jgi-psf.org Caur 2007-12-20 Unpublished Biotechnological, Hydrogen production, Evolutionary, Energy production 324602 59 000954_GCAT 1273 641228485 NC_010175 Complete 5258 3966 1 0 56.6 Sanger USA Hakone hot spring area in Japan Japan Hakone hot spring area in Japan 35.23968 139.04623 Anaerobe Filament-shaped Thermophile gram- Free living Filaments None Hot spring, Fresh water 52 - 60 Motile Green non-sulfur, Carbon dioxide fixation Photosynthetic, Phototroph Bacteria Chloroflexi Chloroflexi (class) Chloroflexales Chloroflexaceae Chloroflexus Chloroflexus aggregans BACTERIAL Chloroflexus aggregans DSM 9485 DSM 9485 Chloroflexus aggregans DSM 9485 DSM 9485 Yes Gc01077 Gi00930 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Cagg 2009-01-05 Unpublished Biotechnological 326427 16708 000955_GCAT 193176 643348527 NC_011831 Complete Level 6: Finished 10x 4684 3903 1 0 56.4 Sanger, 454 USA Hot spring in Japan Japan Hot spring in Japan Facultative Filament-shaped Thermophile gram- Free living Filaments None Hot spring, Fresh water Motile Green non-sulfur Photosynthetic Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Chloroherpeton Chloroherpeton thalassium BACTERIAL Chloroherpeton thalassium GB 78, ATCC 35110 GB 78, ATCC 35110 ATCC 35110 Yes Gc00826 Gi00734 Genome Complete and Published Public Penn State Univ, DOE Joint Genome Institute DOE Bryant D dab14@psu.edu http://www.bmb.psu.edu/faculty/bryant/bryant.html 2008-06-27 Unpublished Energy production, Biotechnological 517418 29215 000956_GCAT 347501 0 NC_011026 Complete 3293 2710 1 0 45 454 USA North East coast of the USA USA North East coast of the USA Facultative Rod-shaped Mesophile gram- Free living None Fresh water Motile Green sulfur Photosynthetic, Photolithotroph Bacteria Chloroflexi Chloroflexi (class) Chloroflexales Chloroflexaceae Chloroflexus Chloroflexus sp. Y-400-fl BACTERIAL Chloroflexus sp. Y-400-fl Y-400-fl Chloroflexus sp. Y-400-fl ATCC 29364, DSM 637 No Gc00953 Gi00931 Genome Complete and Published Public DOE Joint Genome Institute DOE Bryant D dab14@psu.edu Chy400 2009-02-04 Unpublished Biotechnological 480224 21119 000957_GCAT 282094 643692015 NC_012032 Complete 5268 4159 1 0 56.6 USA Alkaline hot spring in Little Long Lake in Wisconsin USA Alkaline hot spring in Little Long Lake in Wisconsin 45.424979 -88.771304 Filament-shaped Mesophile Free living Filaments None Motile Bacteria Chloroflexi Candidatus Chlorothrix BACTERIAL Candidatus Chlorothrix halophila Candidatus Chlorothrix halophila Gi00932 Genome Permanent Draft Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 257501 13622 000958_GCAT 101617 0 Complete Level 1: Standard Draft 5000 0 0 USA Salt evaporation pond microbial mat 14655000 Salt evaporation pond microbial mat Facultative Filament-shaped Mesophile Halophile Free living None Fresh water Motile Phototroph, Photosynthetic Bacteria Chrysiogenetes Chrysiogenetes (class) Chrysiogenales Chrysiogenaceae Chrysiogenes Chrysiogenes arsenatis BACTERIAL Chrysiogenes arsenatis DSM 11915 DSM 11915 Chrysiogenes arsenatis DSM 11915 DSM 11915 Yes Gi00740 Genome incomplete Public J. Craig Venter Institute NSF Biotechnological, Wastewater treatment, Evolutionary 118005 12520 000959_GCAT 0 Complete 0 0 49 USA Gold mine wastewater from the Ballarat Goldfields in Australia in 1996 Australia Gold mine wastewater from the Ballarat Goldfields in Australia in 1996 Anaerobe Rod-shaped Mesophile gram- Free living None Gold mine wastewater Motile Arsenate-respiring Bacteria Verrucomicrobia Verrucomicrobiae Verrucomicrobiales Verrucomicrobia subdivision 3 bacterium Ellin514 BACTERIAL Pedosphaera parvula Ellin514 Ellin514 bacterium Ellin514 Gi01011 Genome Permanent Draft Public DOE Joint Genome Institute DOE Smidt H Hauke.Smidt@wur.nl CflavDRAFT Evolutionary 320771 20839 000960_GCAT 114948 641736236 NZ_ABOX00000000 Complete Level 1: Standard Draft 7474 6530 52 USA "Rye grass and clover pasture in Victoria, Australia" Australia Rye grass and clover pasture in Victoria, Australia Aerobe Rod-shaped Mesophile gram- Free living Pairs, Singles None Soil 25 - 30 Nonmotile Heterotroph Bacteria Verrucomicrobia Spartobacteria Chthoniobacter Chthoniobacter flavus BACTERIAL Chthoniobacter flavus Ellin428 Ellin428 Chthoniobacter flavus Ellin428 Gi01672 Genome incomplete Public DOE Joint Genome Institute DOE Smidt H hauke.smidt@wur.nl CfE428DRAFT Evolutionary 497964 28531 000961_GCAT 356605 642791618 NZ_ABVL00000000 Draft 7858 6776 60.7 USA "Rye grass and clover pasture in Victoria, Australia" Australia Rye grass and clover pasture in Victoria, Australia Aerobe Rod-shaped Mesophile gram- Free living Singles, Pairs None Soil Nonmotile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Citrobacter BACTERIAL Citrobacter rodentium ICC168 ICC168 Citrobacter rodentium Gi00153 Genome incomplete Public Sanger Institute, Imperial College Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical, Animal Pathogen 67825 13422 000963_GCAT 9749 0 5000 0 50 United Kingdom Facultative Rod-shaped Mesophile gram- Free living Murine colonic hyperplasia Motile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Microbacteriaceae Clavibacter Clavibacter michiganensis BACTERIAL Clavibacter michiganensis sepedonicus ATCC 33113 ATCC 33113 Clavibacter michiganensis subsp. sepedonicus NCPBB 2137, PDDCC 2535 LMG 2889, ATCC 33113 Yes Gc00709 Gi00155 Genome Complete and Published Public Sanger Institute USDA Ishimaru CA Carol.Ishimaru@Colostate.edu CMS 2008-02-26 J Bacteriology 190, 2150-60 Plant Pathogen, Agricultural 31964 184 000965_GCAT 190187 642555124 NC_010407 Complete 2-2.8 Kb Phrap 8x Glimmer 2, Orpheus, Artemis 3258 3168 1 2 72.5 Sanger International Infected potato Infected potato Aerobe Rod-shaped Nonsporulating Mesophile gram+ Pairs, Singles Ring rot, Tuber rot Host 25 - 28 Nonmotile Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium difficile BACTERIAL Clostridium difficile QCD-32g58 QCD-32g58 Clostridium difficile QCD-32g58 Gi01611 Genome incomplete Public Washington Univ Dewar K ken.dewar@mcgill.ca CdifQ Animal Pathogen, Swine Pathogen, Medical, Human Pathogen 367459 16328 000969_GCAT 638341066 NZ_AAML00000000 Draft 3834 3833 28 Sanger USA Patient with CDAD from Quebec Canada Canada Patient with CDAD from Quebec Canada Homo sapiens Patient with CDAD Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Colitis, Peritonitis, Diarrhea Host Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium difficile BACTERIAL Clostridium difficile QCD-66c26 QCD-66c26 Clostridium difficile QCD-66c26 Gi02274 Genome incomplete Public McGill Univ Dewar K ken.dewar@mcgill.ca Animal Pathogen, Swine Pathogen, Medical, Human Pathogen 455631 20093 002993_GCAT 0 NZ_ABFD00000000 Draft 4053 0 28 Sanger, 454 USA Patient with severe CDAD from Quebec Canada Canada Patient with severe CDAD from Quebec Canada Homo sapiens Patient with severe CDAD Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles, Chains Peritonitis, Colitis, Diarrhea Host 37 Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium difficile BACTERIAL Clostridium difficile QCD-37x79, NAP1a/001 QCD-37x79, NAP1a/001 Clostridium difficile QCD-37x79 Gi02528 Genome incomplete Public McGill Univ Dewar K ken.dewar@mcgill.ca CdifQCD Animal Pathogen, Swine Pathogen, Medical, Human Pathogen 479834 21109 003254_GCAT 274319 641736218 NZ_ABHG00000000 Draft 4293 4145 28 454, Sanger Canada 67 year old patient with severe CDAD in London Ontario in 2005 2005 Canada 67 year old patient with severe CDAD in London Ontario in 2005 42.982515 -81.253973 Homo sapiens 67 years old Patient with severe CDAD Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Peritonitis, Colitis, Diarrhea Host 29.1 Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium difficile BACTERIAL Clostridium difficile QCD-76w55, NAP1 QCD-76w55, NAP1 Clostridium difficile QCD-76w55 Gi02529 Genome incomplete Public McGill Univ Dewar K ken.dewar@mcgill.ca CdifQCD-7 Animal Pathogen, Swine Pathogen, Medical, Human Pathogen 479832 21105 003255_GCAT 261703 641736216 NZ_ABHE00000000 Draft 4355 4149 28 Sanger, 454 Canada "Male patient in Minneapolis, Minnesota in 1998" 1998 USA Male patient in Minneapolis, Minnesota in 1998 44.977482 -93.264351 Homo sapiens Male Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains, Pairs, Singles Peritonitis, Colitis, Diarrhea Host Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium difficile BACTERIAL Clostridium difficile QCD-97b34, NAP1b/006 QCD-97b34, NAP1b/006 Clostridium difficile QCD-97b34 Gi02530 Genome incomplete Public McGill Univ Dewar K ken.dewar@mcgill.ca CdifQCD- Animal Pathogen, Swine Pathogen, Medical, Human Pathogen 479833 21107 003256_GCAT 641736219 NZ_ABHF00000000 Draft 4055 3836 28 Sanger, 454 Canada "70 year old patient with severe CDAD in St. John's, Newfoundland in 2004" 2004 70 year old patient with severe CDAD in St. John's, Newfoundland in 2004 47.576727 -52.701129 Homo sapiens 70 years old Patient with severe CDAD Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains, Pairs, Singles Peritonitis, Colitis, Diarrhea Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Glaciecola Glaciecola sp. HTCC2999 BACTERIAL Glaciecola sp. HTCC 2999 HTCC 2999 Glaciecola sp. HTCC2999 HTCC2999 Gi02275 Genome incomplete Public J. Craig Venter Institute Giovannoni, S Environmental, Biotechnological 455436 20121 002994_GCAT 643886097 NZ_ABST00000000 Draft 2523 0 40 Sanger USA Aerobe Rod-shaped Nonsporulating Psychrophile gram- Free living None Fresh water Motile Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae HK1212 HK1212 Haemophilus influenzae HK1212 Gi02276 Genome incomplete Public J. Craig Venter Institute Medical, Human Pathogen 456482 20115 002995_GCAT 0 0 0 0 Sanger USA Homo sapiens Airways Throat swab Upper respiratory tract Facultative Rod-shaped Mesophile gram- Free living Brazilian purpuric fever Human upper respiratory tract, Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus parasuis BACTERIAL Haemophilus parasuis 29755 29755 Haemophilus parasuis 29755 Gi02277 Genome incomplete Public Iowa State Univ HPS Animal Pathogen, Swine Pathogen, Medical 456298 20127 002996_GCAT 262113 641736156 NZ_ABKM00000000 Draft 28x 0 2359 39 Sanger, 454-FLX USA stock collection at Iowa State University stock collection at Iowa State University Facultative Rod-shaped Mesophile gram- Free living Glasser's disease Host, Swine upper respiratory tract Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Planococcaceae Lysinibacillus Lysinibacillus sphaericus BACTERIAL Lysinibacillus sphaericus C3-41 C3-41 H5a5b Lysinibacillus sphaericus C3-41 Gc00727 Gi02278 Genome Complete and Published Public Beijing Genomics Institute Chinese Academy of Sciences Yuan Z yzm@wh.iov.cn Bsph 2008-02-27 J. Bacteriology 190, 2892-902 Insect Pathogen, Agricultural 444177 19619 002997_GCAT 641522637 NC_010382 Complete 1.5-3 Kb, 6-8 Kb Phred/Phrap/Consed 8.9x Glimmer 3 4639 5001 1 1 37.3 Sanger China Mosquito breeding site in China in 1987 Mosquito breeding site in China in 1987 Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Larvicidal toxin Mosquito, Soil, Host Motile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus D30 D30 Staphylococcus aureus D30 Gi02279 Genome complete Public Univ of Central Florida Medical, Human Pathogen 455227 19993 002998_GCAT 0 0 0 0 Sanger USA Nasal cavity of a healthy human Nasal cavity of a healthy human Homo sapiens Healthy Airways Nasal Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Toxic-shock syndrome, Nosocomial infection, Staphylococcal scarlet fever Host 30 - 37 Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus 930918-3 930918-3 Staphylococcus aureus 930918-3 Gi02335 Genome incomplete Public Univ of Central Florida Medical 452948 20007 003057_GCAT 0 0 0 0 Sanger USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles None Host 30 - 37 Nonmotile Non-Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Macrococcus Macrococcus caseolyticus BACTERIAL Macrococcus caseolyticus JCSC5402 JCSC5402 Macrococcus caseolyticus JCSC5402 Gc00909 Gi02280 Genome Complete and Published Public Juntendo Univ Baba T tbaba@juntendo.ac.jp MCCL 2009-01-29 J Bacteriology 191, 1180-90 458233 20209 002999_GCAT 643348562 NC_011999 Complete 2102 1950 1 9 36 Sanger Japan animal meat in a supermarket Facultative Coccus-shaped Nonsporulating Mesophile gram- Free living Clusters, Singles None Host 35 Nonmotile Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium BACTERIAL Clostridium ljungdahlii PETC PETC Clostridium ljungdahlii ATCC 55383 Yes Gi00159 Genome incomplete Public Goettingen Genomics Laboratory, Competence Network Celanese Chemicals Gottschalk G ggottsc@gwdg.de Biotechnological 1538 13492 000970_GCAT 16152 0 4600 0 22 Germany Chicken yard waste Chicken yard waste Chicken Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Soil Motile Ethanol production, Acetogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium pasteurianum BACTERIAL Clostridium pasteurianum BC1 BC1 Clostridium pasteurianum BC1 ATCC 53464 Gi00163 Genome incomplete Public Brookhaven Natl Lab DOE, OBER Environmental, Biotechnological 86416 80 000971_GCAT 0 3815 0 27 USA Coal-cleaning residues Coal-cleaning residues Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Soil 30 Motile Nitrogen fixation, Non-Pathogen Chemoorganotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Oxalobacteraceae Collimonas BACTERIAL Collimonas fungivorans Collimonas fungivorans Gi01069 Genome incomplete Public NIOO-KNAW Biotechnological 158899 16085 000974_GCAT 102316 0 0 0 0 Netherlands Dune soil in the Netherlands Netherlands Dune soil in the Netherlands Aerobe Rod-shaped Mesophile gram- Free living None Soil Motile Chitin degradation Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Colwelliaceae Colwellia Colwellia sp. MT41 BACTERIAL Colwellia sp MT41 MT41 Colwellia sp. MT41 Gi00733 Genome incomplete Public J. Craig Venter Institute NSF Methe BA bmethe@tigr.org Biotechnological 58049 29235 000975_GCAT 130223 0 0 0 38 USA "From a deep sea crustacean, Hirondellea gigas, obtained from the Marianas Trench at a depth of 10,476 meters" From a deep sea crustacean, Hirondellea gigas, obtained from the Marianas Trench at a depth of 10,476 meters Hirondellea gigas Facultative Rod-shaped Nonsporulating Psychrophile gram- None Fresh water, Deep sea 2 Motile Piezophile, Barophile Bacteria Firmicutes Clostridia Thermoanaerobacterales Thermodesulfobiaceae Coprothermobacter Coprothermobacter proteolyticus BACTERIAL Coprothermobacter proteolyticus DSM 5265 DSM 5265 DSM 5265, ATCC 35245 Yes Gc00862 Gi00739 Genome Complete and Published Public J. Craig Venter Institute NSF Sutton G 2008-09-26 Unpublished Evolutionary 309798 30729 000976_GCAT 355965 0 NC_011295 Complete Level 6: Finished 1424 1541 1 0 45 USA tannery waste containing cattle manure France Thermophilic digestor Anaerobe Rod-shaped Nonsporulating Thermophile gram+ Free living Pairs, Singles None 63 Nonmotile Acetogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium glutamicum Gi00172 Genome incomplete Proprietary Integrated Genomics Inc BASF contact contact@integratedgenomics.com Amino acids production, Glutamate production, Food industry, Biotechnological 1718 000977_GCAT 140386 0 Complete 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles None Normal microflora, Soil Nonmotile Fast growing Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Butyrivibrio BACTERIAL Clostridium proteoclasticum B316 B316 ATCC 51982 Yes Gi01238 Genome incomplete Public AgResearch Biotechnological, Agricultural 43305 000978_GCAT 13933 0 Complete 0 0 28 New Zealand Rumen contents of New Zealand cattle grazing fresh forage New Zealand Rumen contents of New Zealand cattle grazing fresh forage Cattle Rumen Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Host, Bovine rumen Motile Proteolytic Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium pseudotuberculosis 1002 1002 ovis Gi00934 Genome incomplete Public Univ Federal de Minas Gerais FAPEMIG Azevedo V vasco@mono.icb.ufmg.br Medical, Animal Pathogen 1719 000979_GCAT 13411 0 Draft 2273 2155 52.2 Brazil Goat caseous granulomas found in Bahia state Goat caseous granulomas found in Bahia state Facultative Rod-shaped Nonsporulating Mesophile gram+ Singles Caseous lymphadenitis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium thermoaminogenes FERM9246 FERM9246 Gi00174 Genome incomplete Proprietary Ajinomoto Co., Inc, NITE Gojobori T http://wdcm.nig.ac.jp/gojobori.html Biotechnological 161484 000980_GCAT 0 0 0 0 Japan Anaerobe Rod-shaped Nonsporulating Thermophile gram+ Free living Singles None Soil Nonmotile Non-Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium urealyticum DSM 7111 DSM 7111 ATCC 43044, DSM 7111 No Gi01607 Genome incomplete Public Bielefeld Univ Bielefeld Univ Tauch A Andreas.Tauch@genetik.uni-bielefeld.de Medical, Human Pathogen 43771 000981_GCAT 13367 0 2300 0 0 Germany Urine Urine Homo sapiens Urogenital tract Urine Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Urinary tract infection, Cystitis, Pyelitis Host 37 Pathogen, Lipophilic Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium urealyticum BACTERIAL Corynebacterium urealyticum DSM 7109 DSM 7109 Corynebacterium urealyticum DSM 7109 ATCC 43042, NCTC 12011, DSM 7109 Yes Gc00755 Gi01606 Genome Complete and Published Public Bielefeld Univ Bielefeld Univ Tauch A Andreas.Tauch@genetik.uni-bielefeld.de 2008-04-01 J Biotechnology 136, 11-21 Medical, Human Pathogen 504474 29211 000982_GCAT 13367 641522620 NC_010545 Complete 2369 2093 1 0 64 Germany Bladder stone Bladder stone Homo sapiens patient with bladder stone Bladder Bladder stone Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Urinary tract infection, Cystitis, Pyelitis Host 37 Pathogen, Lipophilic Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Legionellales Coxiellaceae Coxiella Coxiella burnetii BACTERIAL Coxiella burnetii CbuG_Q212 CbuG_Q212 Coxiella burnetii CbuG_Q212 Gc00881 Gi01953 Genome Complete and Published Public RML-NIAID, Integrated Genomics Inc NIH-NIAID Samuel JE jsamuel@tamhsc.edu 2008-11-06 Infect Immun. 77, 642-56 Animal Pathogen, Medical, Human Pathogen, Biothreat 434923 19137 002579_GCAT 356835 643348531 NC_011527 Complete 2008 1871 1 0 42 USA case of endocarditis case of endocarditis Homo sapiens Patient with endocarditis Facultative Coccus-shaped Sporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Singles Food poisoning, Q fever Host Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Legionellales Coxiellaceae Coxiella Coxiella burnetii BACTERIAL Coxiella burnetii CbuK_Q154 CbuK_Q154 Coxiella burnetii CbuK_Q154 Gc00880 Gi01954 Genome Complete and Published Public RML-NIAID, Integrated Genomics Inc NIH-NIAID Samuel JE jsamuel@tamhsc.edu 2008-11-06 Infect Immun. 77, 642-56 Animal Pathogen, Medical, Human Pathogen, Biothreat 434924 19139 002580_GCAT 369055 643348532 NC_011528 Complete 2063 1905 1 1 42 USA patient with endocarditis patient with endocarditis Homo sapiens Patient with endocarditis Facultative Coccus-shaped Sporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Singles Food poisoning, Q fever Host Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Legionellales Coxiellaceae Coxiella Coxiella burnetii BACTERIAL Coxiella burnetii MSU Goat Q177 MSU Goat Q177 Coxiella burnetii 'MSU Goat Q177' Gi01270 Genome incomplete Public J. Craig Venter Institute NIH-NIAID A Animal Pathogen, Medical, Human Pathogen, Biothreat 360116 17747 000984_GCAT 640963018 NZ_AAUP00000000 Draft 2100 2440 47 USA Facultative Coccus-shaped Sporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Singles Food poisoning, Q fever Host Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Legionellales Coxiellaceae Coxiella Coxiella burnetii BACTERIAL Coxiella burnetii RSA 331 RSA 331 Coxiella burnetii RSA 331 Gc00692 Gi01294 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Samuel JE jsamuel@tamu.edu http://gene.tamu.edu/faculty_pages/faculty_SamuelJ.php COXBURSA 2007-12-05 Unpublished Medical, Human Pathogen 360115 16791 000985_GCAT 249377 641228487 NC_010117 Complete 2016 2308 1 1 42 Sanger USA Blood of an infected patient in northern Italy in 1945 1945 Italy Blood of an infected patient in northern Italy in 1945 Homo sapiens Patient Blood Facultative Coccus-shaped Sporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Singles Food poisoning Host, Blood Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Legionellales Coxiellaceae Coxiella BACTERIAL Coxiella burnetii RSA 334 RSA 334 Coxiella burnetii RSA 334 Gi01271 Genome incomplete Public J. Craig Venter Institute NIH-NIAID COXBURSA Animal Pathogen, Medical, Human Pathogen 777 18975 000986_GCAT 269121 641736241 NZ_AAYJ00000000 Draft 2100 2052 47 USA Facultative Coccus-shaped Sporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Singles Food poisoning, Q fever Host Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Methylococcales Crenotrichaceae Crenothrix BACTERIAL Crenothrix polyspora Gi01569 Metagenome incomplete Public DOE Joint Genome Institute DOE Michael Wagner wagner@microbial-ecology.net Environmental, Ecological 360316 000987_GCAT 146829 0 In progress short-insert 76928 pUC18 lucy / pga 3278 0 0 0 Dideoxysequencing USA Biofilm from drinking water system May 10, 2007 Germany Wolfenbuettel waterworks 80 m Aerobe Filament-shaped Mesophile gram- Free living None Fresh water, Soil Methane oxidation Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Croceibacter Croceibacter atlanticus BACTERIAL Croceibacter atlanticus HTCC2559 HTCC2559 Croceibacter atlanticus HTCC2559 HTCC2559 Gi00838 Genome incomplete Public J. Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm CA Marine Microbial Initiative (MMI), Environmental 216432 13570 000988_GCAT 145215 638341073 NZ_AAMP00000000 Draft 8.61x 2954 2792 33.9 Sanger USA Sargasso Sea at a depth of 10m Sargasso Sea at a depth of 10m Surface, 10 m Aerobe Rod-shaped Mesophile gram- Free living None Marine Nonmotile Chemoheterotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium butyricum BACTERIAL Clostridium butyricum 5521 5521 Clostridium butyricum 5521 Gi02249 Genome incomplete Public J. Craig Venter Institute NIH-NIAID CBY Medical, Human Pathogen 447214 20023 002954_GCAT 262592 641736144 NZ_ABDT00000000 Draft 8.53X 4540 4074 28 Sanger USA Case of botulism Case of botulism Homo sapiens Patient with botulism Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles, Chains Botulism Food 37 Motile Pathogen Chemoorganotroph Bacteria Cyanobacteria Chroococcales Crocosphaera Crocosphaera watsonii BACTERIAL Crocosphaera watsonii WH 8501 WH 8501 Crocosphaera watsonii WH 8501 Gi00176 Genome Permanent Draft Public DOE Joint Genome Institute, Woods Hole Oceanographic Institute DOE Bruce D microbes@cuba.jgi-psf.org CwatDRAFT Environmental 165597 10651 000989_GCAT 137516 638341074 NZ_AADV00000000 Complete Level 1: Standard Draft 6238 6038 37.1 Sanger USA Mesophile gram- Free living None Fresh water Nitrogen fixation Diazotroph, Photosynthetic Bacteria Cyanobacteria Chroococcales Crocosphaera Crocosphaera watsonii BACTERIAL Crocosphaera watsonii WH0002 WH0002 Crocosphaera watsonii WH 0002 Gi01148 Genome incomplete Public J. Craig Venter Institute Moore Foundation Waterbury J http://www.whoi.edu/science/B/people/ewebb/Waterburycv.htm Marine Microbial Initiative (MMI), Environmental 344748 15661 000990_GCAT 0 0 0 0 USA Subtropical Pacific Ocean waters at 50 meters depth Pacific Ocean -22.75 -158.13333 50 meters Mesophile gram- Free living None Marine Nitrogen fixation Photosynthetic Bacteria Chloroflexi Dehalococcoidetes Dehalococcoides Dehalococcoides sp. VS BACTERIAL Dehalococcoides sp. VS VS Dehalococcoides sp. VS Gi00938 Genome complete Public DOE Joint Genome Institute DOE Spormann AM spormann@stanford.edu DeVSDRAFT Bioremediation, Environmental, Ecological, Biotechnological 311424 18811 000992_GCAT 238523 641380429 NZ_ABFQ00000000 Complete Level 6: Finished 2287 2221 55 USA Texas USA Texas Anaerobe Nonsporulating Mesophile gram- Free living None Fresh water, Groundwater Motile Dechlorinates Tetrachloroethene Chemolithotroph Bacteria Proteobacteria Deltaproteobacteria BACTERIAL delta proteobacterium sp MLMS-1 MLMS-1 delta proteobacterium MLMS-1 Gi01532 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org MldDRAFT Bioremediation, Environmental, Ecological 262489 15764 000993_GCAT 106795 638341245 NZ_AAQF00000000 Draft 6058 5576 0 Sanger USA Mono Lake California USA Mono Lake California 37.986853 -119.045711 Anaerobe Rod-shaped Mesophile gram- Free living None Fresh water Motile Chemolithotroph, Chemoautotroph Bacteria Deinococcus-Thermus Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus deserti BACTERIAL Deinococcus deserti VCD115 VCD115 Deinococcus deserti DSM 17065, LMG 22923 Yes Gc00979 Gi01514 Genome Complete and Published Public Genoscope de Groot A nicolaas.degroot@cea.fr Deide 2009-04-02 PLoS Genetics 5(3):e1000434 Environmental, Biotechnological 546414 16691 000994_GCAT 112393 643692020 NC_012526 Complete Level 6: Finished 3Kb, 10Kb, 20-25Kb pcDNA2.1, pCNS, pBeloBac11 Phred/Phrap/Consed 12x FrameD, MED 3800 2650 1 3 59.8 France Sahara Desert in Morocco and Tunisia Morocco 16280508 Sahara Desert in Morocco and Tunisia Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living None Soil Nonmotile Radiation resistant Bacteria Cyanobacteria Nostocales Rivulariaceae Calothrix Calothrix sp. SC01 BACTERIAL Calothrix sp. SC01 SC01 Calothrix sp. SC01 Gi01687 Genome incomplete Public UCSC, J. Craig Venter Institute Moore Foundation Zehr JP http://oceansci.ucsc.edu/faculty/zehr.html Marine Microbial Initiative (MMI), Environmental 439482 19291 000996_GCAT 0 5000 0 0 USA spines of the diatom Chaetoceros taken at a depth of 5 meters at the ALOHA station in the North Pacific Ocean 27 Nov 2004 USA North Pacific Ocean 22.75 -158 5 meters Aerobe Mesophile gram- Free living None Marine Motile Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Desulfitobacterium Desulfitobacterium hafniense BACTERIAL Desulfitobacterium hafniense DCB-2 DCB-2 Desulfitobacterium hafniense DCB-2 DSM 10664 Yes Gc00918 Gi00192 Genome Complete and Published Public Michigan State Univ, DOE Joint Genome Institute DOE TiedjeJM tiedjej@msu.edu Dhaf 2009-01-05 Unpublished Environmental, Bioremediation 272564 205 000997_GCAT 161064 643348537 NC_011830 Complete 5279 4875 1 0 47.5 Sanger USA Municipal sludge, Denmark Denmark Municipal sludge Anaerobe Rod-shaped Sporulating Mesophile gram- Free living Chains, Pairs, Singles None Sludge 37 - 38 Motile Degrades pollutants Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobacteraceae Desulfobacterium Desulfobacterium autotrophicum BACTERIAL Desulfobacterium autotrophicum HRM2, DSM 3382 HRM2, DSM 3382 Desulfobacterium autotrophicum HRM2 DSM 3382, ATCC 43914 Yes Gc00947 Gi00194 Genome Complete and Published Public REGX, Goettingen Genomics Laboratory BMBF Amann R ramann@mpi-bremen.de HRM2 2009-02-20 Environmental Microbiology 4(2):e4510 Biotechnological 177437 20931 000998_GCAT 643692021 NC_012108 Complete 1.5-2.5Kb, 1.5-3.5Kb, 2.5-4.0Kb 110511 Phrap 11.8x Glimmer, Critica, Z curve 5589 4871 1 1 48.9 Sanger Germany Marine sediment in the Mediterranean sea near Italy Italy Marine sediment in the Mediterranean sea near Italy Anaerobe Rod-shaped Mesophile gram- Free living None Fresh water 20 - 30 Motile Sulfate reducer Lithoautotroph Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Candidatus Desulforudis Candidatus Desulforudis audaxviator BACTERIAL Candidatus Desulforudis audaxviator MP104C MP104C Candidatus Desulforudis audaxviator MP104C Gc00733 Gi01880 Metagenome Complete and Published Public DOE Joint Genome Institute DOE, NASA Bruce D microbes@cuba.jgi-psf.org Daud 2008-03-06 Unpublished Environmental 477974 21047 001000_GCAT 259608 641522610 NC_010424 Complete 2349 2344 1 0 60.8 USA Fracture water from a borehole at a depth of 2.8 km in a South African gold mine South Africa Fracture water from a borehole at a depth of 2.8 km in a South African gold mine Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living None Deep subsurface 60 Motile Sulfate reducer, Nitrogen fixation Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio magneticus BACTERIAL Desulfovibrio magneticus RS-1 RS-1 Desulfovibrio magneticus RS-1 ATCC 700980, DSM 13731 Yes Gc01032 Gi00729 Genome Complete and Published Public NITE Fujita N fujita-nobuyuki@nite.go.jp DMR 2009-06-11 Genome Research Epub Biotechnological 573370 32105 001001_GCAT 10461 638341181 NC_012796 Complete Level 6: Finished 5248 4685 1 2 62 Japan freshwater sulphide-rich mud from a waterway near Kamena River, Wakayama prefecture, Japan 1993 Japan Sediment from the Kamena River in Japan 34.230511 135.170808 Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Fresh water Motile Sulfate reducer, Magnetite production Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas acetoxidans BACTERIAL Desulfuromonas acetoxidans DSM 684 DSM 684 Desulfuromonas acetoxidans DSM 684 DSM 684 Yes Gi00197 Genome Permanent Draft Public Univ of Massachusetts Amherst, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Dace Environmental, Bioremediation 281689 12551 001002_GCAT 159422 638341078 NZ_AAEW00000000 Complete Level 1: Standard Draft 25x 3528 3339 51.8 Sanger USA Anaerobe Rod-shaped Mesophile gram- Free living None Fresh water Motile Syntrophic, Supports electricity generation Bacteria Dictyoglomi Dictyoglomia Dictyoglomales Dictyoglomaceae Dictyoglomus Dictyoglomus thermophilum BACTERIAL Dictyoglomus thermophilum H-6-12, ATCC 35947 H-6-12, ATCC 35947 Dictyoglomus thermophilum H-6-12 DSM 3960, ATCC 35947 Yes Gc00863 Gi00738 Genome Complete and Published Public J. Craig Venter Institute NSF Sutton G 2008-09-26 Unpublished Evolutionary 309799 30731 001004_GCAT 314063 643348542 NC_011297 Complete 1959 1912 1 0 33 USA Slightly alkaline Tsuetae Hot spring in Kumamoto Prefecture in Japan Japan Slightly alkaline Tsuetae Hot spring in Kumamoto Prefecture in Japan 32.789827 130.741667 Anaerobe Rod-shaped Nonsporulating Thermophile gram- Free living Chains, Pairs, Singles None Fresh water, Hot spring 78 Nonmotile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Edwardsiella Edwardsiella ictaluri BACTERIAL Edwardsiella ictaluri 93-146 93-146 Edwardsiella ictaluri Gc01019 Gi00212 Genome Complete and Published Public Mississippi State Univ, Univ of Oklahoma USDA Lawrence M lawrence@cvm.msstate.edu 2009-06-04 Unpublished Medical, Fish Pathogen 634503 34853 001005_GCAT 196308 0 NC_012779 Complete Level 6: Finished 3812 3894 1 0 53 USA Enteric septicemia of catfish outbreak in a commercial catfish pond in Louisiana USA Enteric septicemia of catfish outbreak in a commercial catfish pond in Louisiana Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Enteric septicemia, Septicemia Host, Fresh water Motile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia chaffeensis BACTERIAL Ehrlichia chaffeensis Sapulpa Sapulpa Ehrlichia chaffeensis str. Sapulpa Gi00215 Genome incomplete Public Univ of Texas, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org EchaDRAFT Medical, Human Pathogen 332415 13916 001006_GCAT 132290 638341079 NZ_AAIF00000000 Draft 1005 861 30 Sanger USA "Patient in Oklahoma, US, with severe ehrlichiosis" USA Patient in Oklahoma, US, with severe ehrlichiosis Homo sapiens Patient with severe ehrlichiosis Macrophage Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Ehrlichiosis, Human monocytic ehrlichiosis Host, Macrophage, Monocytes Pathogen Bacteria Elusimicrobia Endomicrobia uncultured Endomicrobia bacterium BACTERIAL Candidatus Endomicrobium trichonymphae Gi01566 Metagenome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Evolutionary 447832 001007_GCAT 0 short-insert and 454 lucy / pga 0 0 0 USA Mt. Pinos, Los Padres National Forest, California, USA Mesophile gram- Symbiotic Termite flagellates None Host Symbiont Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae BACTERIAL Endosymbiont of Sitophilus zeamais Sitophilus zeamais endosymbiont none Gi01239 Genome incomplete Public Univ of Utah NSF Dale C http://www.biology.utah.edu/faculty2.php?inum=110 2341 34863 001009_GCAT 9986 0 0 0 0 USA Mesophile gram- Symbiotic Sitophilus zeamais None Host, Endosymbiont Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae BACTERIAL Endosymbiont of Sitophilus oryzae Sitophilus oryzae endosymbiont none Gi01240 Genome incomplete Public Univ of Utah NSF Dale C http://www.biology.utah.edu/faculty2.php?inum=110 Evolutionary 2342 34865 001010_GCAT 9987 0 0 0 0 USA Mesophile gram- Symbiotic Sitophilus oryzae Endosymbiont Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Enterobacter BACTERIAL Enterobacter cloacae Enterobacter cloacae Gi00225 Genome incomplete Proprietary Genome Therapeutics Medical, Human Pathogen 550 13379 001011_GCAT 210269 0 Complete 0 0 0 USA Facultative Rod-shaped Mesophile gram- Free living Nosocomial infection Host Motile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus BACTERIAL Enterococcus faecalis Gi00226 Genome incomplete Proprietary Genome Therapeutics Medical, Human Pathogen 1351 001012_GCAT 164080 0 Complete 0 0 0 USA Gastrointestinal tract Facultative Mesophile Halotolerant gram+ Free living Endocarditis, Nosocomial infection Wastewater, Gastrointestinal tract Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus BACTERIAL Enterococcus faecium ATCC 35667 ATCC 35667 ATCC 35667 Gi00228 Genome complete Proprietary Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Medical, Human Pathogen 1352 001013_GCAT 15290 0 2092 2000 37 USA Facultative Mesophile Halotolerant gram+ Free living Urinary infection, Bacteremia, Endocarditis Fresh water, Soil, Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium BACTERIAL Enterococcus faecium DO DO Enterococcus faecium DO Gi00229 Genome Permanent Draft Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org EfaeDRAFT Medical, Human Pathogen 333849 71 001014_GCAT 137527 638341080 NZ_AAAK00000000 Complete Level 1: Standard Draft 2980 2848 37 Sanger USA Facultative Mesophile Halotolerant gram+ Free living Urinary infection, Bacteremia, Endocarditis Wastewater, Host Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus BACTERIAL Enterococcus faecium Gi00227 Genome incomplete Proprietary Genome Therapeutics Medical, Human Pathogen 1352 001015_GCAT 15290 0 Complete 0 0 37 USA Facultative Mesophile Halotolerant gram+ Free living Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Epulopiscium Epulopiscium sp. 'N.t. morphotype B' BACTERIAL Epulopiscium sp. N.t. morphotype B N.t. morphotype B Epulopiscium sp. 'N.t. morphotype B' Gi00231 Genome incomplete Public J. Craig Venter Institute NSF Nelson KE kenelson@tigr.org Epulo Biotechnological 420336 20181 001016_GCAT 266998 641736109 NZ_ABEQ00000000 Draft 12.03X 2686 2253 38 USA Anaerobe Oval-shaped Sporulating Mesophile gram+ Symbiotic Fish Singles None Fish, Host Symbiont Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Erwinia BACTERIAL Erwinia amylovora Ea273 Ea273 Erwinia amylovora Gi00233 Genome incomplete Public Sanger Institute, Univ of Wisconsin, Cornell Univ USDA Beer SV http://ppathw3.cals.cornell.edu/ppath/facultyinfo/Beer.html Plant Pathogen, Agricultural 552 12610 001017_GCAT 100417 0 Complete 3700 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Fire blight Host Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Dickeya Erwinia chrysanthemi BACTERIAL Erwinia chrysanthemi 3937 3937 Erwinia chrysanthemi str. 3937 Gi00235 Genome incomplete Public Univ of Wisconsin, J. Craig Venter Institute USDA Perna N perna@svm.vetmed.wisc.edu Plant Pathogen, Agricultural 198628 30 001018_GCAT 0 3700 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Soft rot Host 27 - 30 Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Erwinia BACTERIAL Erwinia tasmaniensis Et1/99 Et1/99 Erwinia tasmaniensis Et1/99 DSM 17950 Yes Gc00782 Gi01608 Genome Complete and Published Public Max Planck Institute Max Planck Society Kube M kube@molgen.mpg.de ETA 2008-05-13 Environ Microbiol 10, 2211-22 Agricultural 338565 20585 001019_GCAT 297358 642555128 NC_010694 Complete 3883 3730 1 5 53.7 Germany "apple flowers in Tasmania, Australia" Australia Tasmania, Australia Facultative Rod-shaped Nonsporulating Mesophile gram- Free living None Host Motile Non-Pathogen, Epiphytic Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Erwinia Erwinia billingiae BACTERIAL Erwinia billingiae Eb661 Eb661 Erwinia billingiae 661 Gi01609 Genome incomplete Public Max Planck Institute Max Planck Society Kube M kube@molgen.mpg.de Agricultural 634500 34781 001020_GCAT 149811 0 4100 0 55 Germany Facultative Rod-shaped Nonsporulating Mesophile gram- Free living None Motile Epiphytic Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter sp. NAP1 BACTERIAL Erythrobacter sp NAP1 NAP1 Erythrobacter sp. NAP1 Gi00841 Genome incomplete Public Rutgers Univ, J. Craig Venter Institute Moore Foundation Falkowski PG http://marine.rutgers.edu/faculty_pfalkowski.html NAP Marine Microbial Initiative (MMI), Environmental 237727 13512 001021_GCAT 145698 638341081 NZ_AAMW00000000 Draft 3264 3268 61 Sanger USA Surface waters of the Northwest Atlantic Ocean NW Atlantic Ocean 39.60000 -72.45000 Surface Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Surface water, Marine 32 Motile Phototroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia blattae BACTERIAL Escherichia blattae DSM 4481 DSM 4481 CIP 104942, ATCC 29907, DSM 4481, JCM 1650 Yes Gi00236 Genome incomplete Public Goettingen Genomics Laboratory, Competence Network Gottschalk G ggottsc@gwdg.de 630626 36307 001022_GCAT 343017 0 4140 0 0 Germany Facultative Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Hind-gut of cockroaches Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia BACTERIAL Escherichia coli O8 IAI 1 IAI 1 O8 Gi01070 Genome incomplete Public Genoscope Barbe V vbarbe@genoscope.cns.fr Medical 562 001023_GCAT 231361 0 0 0 0 France Faeces of a healthy man in the 1980s in France 1980's France Faeces of a healthy man in the 1980s in France Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli 55989 55989 Escherichia coli 55989 Gc00922 Gi01071 Genome Complete and Published Public Genoscope Barbe V vbarbe@genoscope.cns.fr 2008-12-16 Unpublished Medical, Human Pathogen 585055 33413 001024_GCAT 231361 643348544 NC_011748 Complete 5154 4763 1 0 50 France Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea Host, Human intestinal microflora Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli BL21(DE3) BL21(DE3) Escherichia coli BL21(DE3) ATCC BAA-1025 No Gc01058 Gi02360 Genome Complete and Published Public KRIBB Kim JF 2009-07-15 Unpublished Recombinant protein expression, Biotechnological 469008 20713 003088_GCAT 0 NC_012971 Complete Level 6: Finished 4557 4157 1 0 50 Korea Derivative of E. coli strain B Derivative of E. coli strain B Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora 37 Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia BACTERIAL Escherichia coli O7:K1 IAI 39 IAI 39 O7:K1 Gi01072 Genome incomplete Public Genoscope Barbe V vbarbe@genoscope.cns.fr Medical, Human Pathogen 562 001025_GCAT 231361 0 0 0 0 France Urine of a patient with urinary tract infection in France in the 1980s 1980's France Urine of a patient with urinary tract infection in France in the 1980s Homo sapiens Patient with urinary tract infection Urogenital tract Urine Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Urinary infection Host, Human intestinal microflora Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O17:K52:H18 UMN026 UMN026 O17:K52:H18 Escherichia coli UMN026 Gc00921 Gi01073 Genome Complete and Published Public Genoscope Barbe V vbarbe@genoscope.cns.fr 2008-12-17 Unpublished Medical, Human Pathogen 585056 33415 001026_GCAT 231361 643348552 NC_011751 Complete 5202 4826 1 0 50 France Woman with uncomplicated acute cystitis in Minnesota in 1999 1999 USA Woman with uncomplicated acute cystitis in Minnesota in 1999 Homo sapiens Female Patient with acute cystitis Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Urinary infection Host, Human intestinal microflora Motile Pathogen, Highly Virulent Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O81 ED1a ED1a O81 Escherichia coli ED1a Gc00924 Gi01074 Genome Complete and Published Public Genoscope Barbe V vbarbe@genoscope.cns.fr 2008-12-17 Unpublished Medical 585397 33409 001027_GCAT 231361 643348545 NC_011745 Complete 5209 4915 1 0 50 France Faeces of a healthy man in 2000 in France 2000 France Faeces of a healthy man in 2000 in France Homo sapiens Male Healthy Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O45:K1 S88 S88 O45:K1 Escherichia coli S88 Gc00926 Gc00925 Genome Complete and Published Public Genoscope Barbe V vbarbe@genoscope.cns.fr 2008-12-16 Unpublished Medical, Human Pathogen 585035 33375 001028_GCAT 231361 643348550 NC_011742 Complete 5032 4696 1 0 50 France Cerebro-spinal fluid of a late onset neonatal meningitis case in France in 1999 1999 France Cerebro-spinal fluid of a late onset neonatal meningitis case in France in 1999 Homo sapiens Patient with neonatal meningitis Brain Cerebro-spinal fluid Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Meningitis Host, Human intestinal microflora Motile Highly Virulent, Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia fergusonii BACTERIAL Escherichia fergusonii UMN026, ATCC 35469 UMN026, ATCC 35469 Escherichia fergusonii ATCC 35469 ATCC 35469 Yes Gc00910 Gi01076 Genome Complete and Published Public Genoscope Barbe V vbarbe@genoscope.cns.fr 2008-12-16 Unpublished Medical 585054 33369 001029_GCAT 91643 643692022 NC_011740 Complete AMIGene:2.0 4588 4266 1 0 49.9 France Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O144 53638 53638 O144 Escherichia coli 53638 Gi01134 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Ecol Medical, Human Pathogen 344610 15639 001031_GCAT 139331 638341083 NZ_AAKB00000000 Draft 5289 4889 51 Sanger USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Dysenteria Host, Human intestinal microflora 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli E22 (EPEC) E22 (EPEC) Escherichia coli E22 Gi01135 Genome incomplete Public J. Craig Venter Institute NIH-NIAID EcolE Medical, Human Pathogen 340185 15577 001032_GCAT 350309 638341087 NZ_AAJV00000000 Draft 5516 4887 50 Sanger USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea Host, Human intestinal microflora Motile Enteropathogenic Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O139:H28 F11 (ETEC) F11 (ETEC) O139:H28 Escherichia coli F11 Gi01136 Genome incomplete Public J. Craig Venter Institute NIH-NIAID EcolF Medical, Human Pathogen 340197 15576 001033_GCAT 334667 638341089 NZ_AAJU00000000 Draft 4 Kb, 10 Kb 10x 5206 4563 50 Sanger USA Woman with a case of cystitis with bacteriuria Woman with a case of cystitis with bacteriuria Homo sapiens Female Patient with cystitis Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Human cystitis, Diarrhea Host, Human intestinal microflora Motile Enterotoxigenic Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O148:H28 B7A (CS6:LT+:ST+)(ETEC) B7A (CS6:LT+:ST+)(ETEC) O148:H28 Escherichia coli B7A Gi01137 Genome incomplete Public J. Craig Venter Institute NIH-NIAID EcolB Medical, Human Pathogen 340184 15572 001034_GCAT 305292 638341085 NZ_AAJT00000000 Draft 5202 4720 50 Sanger USA American soldier who had diarrhea in Viet Nam American soldier who had diarrhea in Viet Nam Homo sapiens Male Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea Host Motile Enterotoxigenic Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O111:H9 E110019 (EPEC) E110019 (EPEC) O111:H9 Escherichia coli E110019 Gi01138 Genome incomplete Public J. Craig Venter Institute NIH-NIAID EcolE Medical, Human Pathogen 340186 15578 001035_GCAT 338358 638341086 NZ_AAJW00000000 Draft 5384 4838 50 Sanger USA Oubreak of diarrhea in 1987 in Finland 1987 Finland Oubreak of diarrhea in 1987 in Finland Homo sapiens Patient with diarrhea Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea Host, Human intestinal microflora Motile Enteropathogenic Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O111:NM B171 (EPEC2) B171 (EPEC2) O111:NM Escherichia coli B171 Gi01139 Genome incomplete Public J. Craig Venter Institute NIH-NIAID EcolB Medical, Human Pathogen 344601 15630 001036_GCAT 351075 640048319 NZ_AAJX00000000 Draft 5299 80 1 1 50 Sanger USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea Host, Human intestinal microflora Motile Enteropathogenic Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia BACTERIAL Escherichia coli H8 H8 Gi00941 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Medical, Human Pathogen 562 001038_GCAT 231361 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea Host, Human intestinal microflora Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli 101-1 101-1 Escherichia coli 101-1 Gi01272 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Ecol Medical, Human Pathogen 358709 16193 001039_GCAT 306491 638341082 NZ_AAMK00000000 Draft 4880 4326 0 Sanger USA Outbreak in Japan Japan Outbreak in Japan Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea Host, Human intestinal microflora Motile Enteroaggregative, Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli Nissle 1917 Nissle 1917 Gi00842 Genome incomplete Public Bielefeld Univ BMBF Puhler A puehler@genetik.uni-bielefeld.de Medical 316435 001040_GCAT 0 0 0 0 Germany Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O26:H11 O26:H11 Gi00828 Genome incomplete Public Kitasato Univ Medical, Human Pathogen 244319 001041_GCAT 0 0 0 40 Japan Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea Host, Human intestinal microflora Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O111:H O111:H Gi00829 Genome incomplete Public Kitasato Univ Medical, Human Pathogen 168927 001042_GCAT 0 0 0 40 Japan Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea Host, Human intestinal microflora Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O103:H2 O103:H2 Gi00830 Genome incomplete Public Kitasato Univ Medical, Human Pathogen 376725 001043_GCAT 0 0 0 40 Japan Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea Host, Human intestinal microflora Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia BACTERIAL Escherichia coli 789 AC/1 789 AC/1 Gi01515 Genome incomplete Public Tel Aviv Univ, Univ of Wuerzburg, Goettingen Genomics Laboratory Medical, Human Pathogen 562 001044_GCAT 231361 0 Complete 4800 0 0 Germany Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea Host, Human intestinal microflora Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli DH10B DH10B Escherichia coli str. K-12 substr. DH10B KCTC 12020 Gc00716 Gi00237 Genome Complete and Published Public BCM-HGSC, Univ of Wisconsin-Madison NIH-NHGRI Weinstock G gweinsto@watson.wustl.edu ECDH 2008-03-14 J. Bacteriology 190, 2597-606 Medical, Human Pathogen 316385 20079 001045_GCAT 270795 641522625 NC_010473 Complete SeqMan 25.6x 4686 4293 1 0 50 Sanger USA "Common laboratory strain, substrain of K-12. It was derived from DH10 (which was derived from MC1061 which in turn was derived from M182)" Laboratory strain Common laboratory strain, substrain of K-12. It was derived from DH10 (which was derived from MC1061 which in turn was derived from M182) Homo sapiens Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora 37 Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli 042 (EAEC) 042 (EAEC) Escherichia coli 042 Gi00238 Genome incomplete Public Sanger Institute, Institut Pasteur Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical, Human Pathogen 216592 340 001046_GCAT 42 0 Complete 0 0 0 European Consortium Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea Host, Human intestinal microflora Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O127:H6 E2348/69 (EPEC) E2348/69 (EPEC) Escherichia coli O127:H6 str. E2348/69 Gc00878 Gi00239 Genome Complete and Published Public Sanger Institute, Institut Pasteur Beowulf Genomics Frankel G frankel@imperial.ac.uk E2348C 2008-11-26 J Bacteriology 191, 347-54 Medical, Human Pathogen 574521 32571 001047_GCAT 643348548 NC_011601 Complete 2.8-5Kb, 5.5-10Kb pUC19, pMAQ1b 8x GeneHacker 4965 4554 1 2 50.6 European Consortium Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea Human intestinal microflora, Host Motile Enteropathogenic, Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia BACTERIAL Escherichia coli H10407 (ETEC) H10407 (ETEC) Gi00240 Genome incomplete Public Univ of Wisconsin NIH-NIAID Blattner FR http://www.genetics.wisc.edu/research/blattner/blattner_f.html Animal Pathogen, Swine Pathogen, Medical 562 001048_GCAT 231361 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea Host, Human intestinal microflora Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O18ac:H7:K1 RS218 (NMEC) RS218 (NMEC) O18ac:H7:K1 Escherichia coli RS218 Gi00243 Genome incomplete Public Univ of Wisconsin, BCM-HGSC NIH-NIAID Weinstock G gweinsto@watson.wustl.edu http://www.genetics.wisc.edu/research/blattner/blattner_f.html Medical, Human Pathogen 439184 19411 001049_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Septicemia, Urinary infection, Neonatal meningitis Host, Human intestinal microflora Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia BACTERIAL Escherichia coli non-K1 invasive clinical isolate non-K1 invasive clinical isolate Gi00242 Genome incomplete Public Sanger Institute, Institut Pasteur Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical, Human Pathogen 562 001050_GCAT 231361 0 0 0 0 European Consortium Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea Host, Human intestinal microflora Motile Pathogen Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium Eubacterium eligens BACTERIAL Eubacterium eligens ATCC 27750 ATCC 27750 Eubacterium eligens ATCC 27750 Yes Gc01021 Gi00245 Genome Complete and Published Public Washington Univ NSF Gordon JI jgordon@wustl.edu EUBELI 2009-06-04 PNAS 14, 5859-5864 Medical, Biotechnological 515620 29073 001051_GCAT 0 NC_012778 Complete Level 6: Finished 2144 2069 1 2 37 USA Human feces Jeffrey I. Gordon, jgordon@wustl.edu Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Mesophile gram- Free living None Soil, Host, Intestinal microflora Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium Eubacterium rectale BACTERIAL Eubacterium rectale ATCC33656 ATCC33656 Eubacterium rectale ATCC 33656 ATCC33656 Yes Gc01020 Gi01743 Genome Complete and Published Public Washington Univ NSF Gordon JI jgordon@wustl.edu EUBREC 2009-06-04 PNAS 14, 5859-5864 Medical, Biotechnological 515619 29071 001052_GCAT 0 NC_012781 Complete Level 6: Finished 3449 3698 1 0 41 USA Human feces Jeffrey I. Gordon, jgordon@wustl.edu Human feces Homo sapiens Healthy Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host, Intestinal microflora Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae Eubacterium dolichum BACTERIAL Eubacterium dolichum DSM 3991 DSM 3991 Eubacterium dolichum DSM 3991 DSM 3991, ATCC 29143 Yes Gi01923 Genome incomplete Public Washington Univ NSF Gordon J jgordon@wustl.edu EUBDOL Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 428127 18927 002547_GCAT 368 270972 641380446 NZ_ABAW00000000, ABAW00000000 Draft PCAP 11.6x GeneMark v3.3, Glimmer2 v2.13 51 2190 2395 38.1 Sanger, 454-GS20 USA Human feces DSM 3991 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Mesophile gram+ Free living None Host, Intestinal microflora 37 Bacteria Firmicutes Bacilli Bacillales Exiguobacterium Exiguobacterium sibiricum BACTERIAL Exiguobacterium sibiricum 255-15 255-15 Exiguobacterium sibiricum 255-15 VKM B-2376, JCM 13490, DSM 17290 Yes Gc00762 Gi00247 Genome Complete and Published Public Michigan State Univ, DOE Joint Genome Institute DOE Rodrigues DF rodri257@msu.edu Exig 2008-04-03 BMC Genomics 9, 547 Astrobiological, Cold adaptation, Biotechnological 262543 10649 001053_GCAT 262209 641522626 NC_010556 Complete 3034 3247 1 2 47.8 Sanger USA depth of 43.6 m in the permafrost sediment of the Kolyma Indigirka Lowland 3 million-year permafrost core in Siberia Russia Russia Siberia Russia 70 158 43.6 meters Facultative Rod-shaped Nonsporulating Psychrotrophic gram+ Free living Pairs, Singles, Chains None Permafrost sediment Motile Bacteria Firmicutes Bacilli Bacillales Exiguobacterium Exiguobacterium sp. AT1b BACTERIAL Exiguobacterium sp. AT1b AT1b Exiguobacterium sp. AT1b ATCC BAA-1283 Gc01000 Gi02005 Genome Complete and Published Public DOE Joint Genome Institute DOE Tiedje J tiedjej@msu.edu EAT1b 2009-05-05 Unpublished Biotechnological, Astrobiological 360911 27759 002634_GCAT 284647 643692023 NC_012673 Complete Level 6: Finished 2999 3141 1 0 47.8 USA Yellowstone National Park USA Yellowstone National Park 44.376262 -110.690383 Facultative Rod-shaped Nonsporulating Thermophile gram+ Free living None Bacteria Fibrobacteres Fibrobacteres (class) Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter succinogenes BACTERIAL Fibrobacter succinogenes S85 S85 Fibrobacter succinogenes subsp. succinogenes S85 Gi00251 Genome incomplete Public NACRB, J. Craig Venter Institute USDA Nelson KE http://www.tigr.org/~kenelson/ Biotechnological 59374 47 001055_GCAT 3576 0 3600 0 0 USA Anaerobe Nonsporulating Mesophile gram- Free living None Host 37 Nonmotile Cellulose degrader Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Flavobacterium BACTERIAL Flavobacterium psychrophilum Gi00252 Genome incomplete Public NCCCWA, Integrated Genomics Inc USDA Wiens G gwiens@ncccwa.ars.usda.gov Medical, Fish Pathogen 96345 001057_GCAT 109940 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Psychrophile gram- Free living Bacterial cold water, Rainbow trout fry syndrome Fresh water Motile Pathogen Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Leeuwenhoekiella Leeuwenhoekiella blandensis BACTERIAL Leeuwenhoekiella blandensis MED217 MED217 Leeuwenhoekiella blandensis MED217 Gi00843 Genome incomplete Public Kalmar Univ, J. Craig Venter Institute Moore Foundation Pinhassi J http://halia.hik.se/start.jsp?page=members/jarone%20pinhassi MED Marine Microbial Initiative (MMI), Environmental 398720 13573 001058_GCAT 142804 638341115 NZ_AANC00000000 Draft 4238 3818 39 Sanger USA NW Mediterranean Sea at a depth of 1m NW Mediterranean Sea at a depth of 1m 41.66667 2.80000 1 meter Mesophile gram- Free living None Marine Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella philomiragia BACTERIAL Francisella philomiragia ATCC 25017 ATCC 25017 Francisella philomiragia subsp. philomiragia ATCC 25017 ATCC 25017 Gc00722 Gi00253 Genome Complete and Published Public CDC, Lawrence Livermore National Lab, DOE Joint Genome Institute Garcia E garcia12@llnl.gov Fphi 2008-02-11 Unpublished Animal Pathogen, Medical, Human Pathogen, Biothreat 484022 27853 001059_GCAT 141624 641522628 NC_010336 Complete 2045 2012 1 1 34 USA Water in the Bear River Refuge in Utah USA Bear River Refuge in Utah Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Pneumonia, Septicemia, Bacteremia Host, Fresh water Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella BACTERIAL Francisella tularensis OR-960463 OR-960463 Gi01516 Genome incomplete Public DOE Joint Genome Institute Bruce D microbes@cuba.jgi-psf.org Animal Pathogen, Medical, Human Pathogen, Biothreat 263 001060_GCAT 7752 0 Complete 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Tularemia Host, Fresh water Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella philomiragia BACTERIAL Francisella philomirangia ATCC 25015 ATCC 25015 Francisella philomiragia subsp. philomiragia ATCC 25015 DSM 7535, ATCC 25015 Yes Gi01178 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Human Pathogen, Medical, Animal Pathogen, Biothreat 539329 32411 001062_GCAT 0 NZ_ABYY00000000 Draft 28.68 1985 0 32 USA muskrat in Utah USA 2541646 muskrat in Utah Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Singles Septicemia, Pneumonia, Bacteremia Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis ATCC6223 ATCC6223 Francisella tularensis subsp. tularensis ATCC 6223 ATCC6223 Yes Gi01179 Genome incomplete Public BCM-HGSC Petrosino J jpetrosi@bcm.tmc.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Animal Pathogen, Medical, Human Pathogen, Biothreat 491120 30629 001063_GCAT 0 24x 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Septicemia, Pneumonia Host, Fresh water Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis holarctica KO971026 KO971026 Francisella tularensis subsp. holarctica KO971026 Gi01856 Genome incomplete Public BCM-HGSC Petrosino J jpetrosi@bcm.tmc.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Animal Pathogen, Medical, Human Pathogen, Biothreat 491121 30633 001064_GCAT 0 24.5x 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Pneumonia, Septicemia Host, Fresh water Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis holarctica MI001730 MI001730 Francisella tularensis subsp. holarctica MI001730 Gi01857 Genome incomplete Public BCM-HGSC Petrosino J jpetrosi@bcm.tmc.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Animal Pathogen, Medical, Human Pathogen, Biothreat 491122 30635 001065_GCAT 0 32.5x 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Pneumonia, Septicemia Host, Fresh water Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis holarctica OR96246 OR96246 Francisella tularensis subsp. holarctica OR96246 Gi01858 Genome incomplete Public BCM-HGSC Petrosino J jpetrosi@bcm.tmc.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Animal Pathogen, Medical, Human Pathogen, Biothreat 491123 30669 001066_GCAT 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Pneumonia, Septicemia Host, Fresh water Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis RC503 RC503 Francisella tularensis subsp. holarctica RC503 Gi01859 Genome incomplete Public BCM-HGSC Petrosino J jpetrosi@bcm.tmc.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Animal Pathogen, Medical, Human Pathogen, Biothreat 491125 30637 001067_GCAT 0 27.7x 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Pneumonia, Septicemia Fresh water, Host Nonmotile Pathogen Bacteria Cyanobacteria Nostocales Microchaetaceae Tolypothrix BACTERIAL Fremyella diplosiphon UTEX 481 UTEX 481 Tolypothrix sp. PCC 7601 PCC 7601 Gi01860 Genome incomplete Public BCM-HGSC NSF Weinstock G gweinsto@watson.wustl.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Quorum sensing 1188 30639 001068_GCAT 0 12000 0 0 USA Filament-shaped Mesophile gram- Free living None Fresh water, Fresh water Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum BACTERIAL Fusobacterium nucleatum nucleatum ATCC 23726 ATCC 23726 Fusobacterium nucleatum subsp. nucleatum ATCC 23726 ATCC 23726 No Gi01861 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Human Microbiome Project (HMP), Medical, Human Pathogen 525283 31471 SRS001971 001069_GCAT 397 HOMD: tax_698 156573 0 In progress 365821 Newbler/1.1.02.12 11.9X 663 2400 0 0 454-FLX USA Human vaginal sample ATCC Homo sapiens Female Urogenital tract Vaginal Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Periodontal infection Host, Oral microflora Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus reuteri BACTERIAL Lactobacillus reuteri MM4-1 MM4-1 Lactobacillus reuteri MM4-1 Unknown Gi01862 Genome incomplete Public BCM-HGSC BCM-HGSC hmpstrains@bcm.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Biotechnological, Medical, Human Microbiome Project (HMP), Food industry 548485 31511 SRS001980 001070_GCAT 536 269185 643886052 NZ_ACGX00000000, ACGX00000000 Draft Newbler/2.0.0 31.91X 131 1935 2082 38 Illumina, 454-FLX USA Homo sapiens Gastrointestinal tract Feces Microaerophilic Rod-shaped Mesophile gram+ Free living None Host, Birds intestinal microflora, Mammalian intestinal microflora, Human intestinal microflora Nonmotile Non-Pathogen, Probiotic Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus reuteri BACTERIAL Lactobacillus reuteri SD2112 SD2112 Lactobacillus reuteri SD2112 ATCC 55730 Unknown Gi01863 Genome incomplete Public BCM-HGSC BCM-HGSC hmpstrains@bcm.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Biotechnological, Medical, Human Microbiome Project (HMP), Food industry 491077 30643 SRS000259 001071_GCAT 538 HOMD: tax_818 643886049 NZ_ACGW00000000, ACGW00000000 Draft Newbler/1.1.03.24 66.35X 339 2036 2304 38.8 454-FLX USA Homo sapiens Gastrointestinal tract Intestinal tract Microaerophilic Rod-shaped Mesophile gram+ Free living None Mammalian intestinal microflora, Host, Human intestinal microflora, Birds intestinal microflora Nonmotile Non-Pathogen, Probiotic Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia prowazekii BACTERIAL Rickettsia prowazekii Madrid E (virulent ancestor) Madrid E (virulent ancestor) Gi01864 Genome incomplete Public BCM-HGSC NIH-NIAID Weinstock G gweinsto@watson.wustl.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Biothreat, Medical, Human Pathogen 272947 001072_GCAT 0 1300 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Rocky Mountain Spotted Fever, Typhus Host Nonmotile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia BACTERIAL Rickettsia prowazekii Nuevo Leon Amblyomma tick Nuevo Leon Amblyomma tick Gi01865 Genome incomplete Public BCM-HGSC Weinstock G gweinsto@watson.wustl.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Biothreat, Medical, Human Pathogen 782 001073_GCAT 5924 0 52x 0 0 0 USA Mexican tick Mexican tick Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Rocky Mountain Spotted Fever, Typhus Host Nonmotile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia prowazekii BACTERIAL Rickettsia prowazekii RP22 RP22 Rickettsia prowazekii RP22 Gi02334 Genome incomplete Public CNRS Biothreat, Medical, Human Pathogen 449216 19813 003056_GCAT 0 0 0 0 France Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Rocky Mountain Spotted Fever, Typhus Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus MRSA USA300_TCH1516 MRSA USA300_TCH1516 Staphylococcus aureus subsp. aureus USA300_TCH1516 Gc00688 Gi01866 Genome Complete and Published Public BCM-HGSC Highlander, SK sarahh@bcm.tmc.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html USA300HOU 2007-11-16 BMC Microbiology 7, 99 Medical, Human Pathogen 451516 19489 001074_GCAT 269837 643692036 NC_010079 Complete 2872 2907 1 1 0 USA methicillin resistant strain methicillin resistant strain Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 37 Nonmotile Meticillin resistant, Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus USA300_TCH959 USA300_TCH959 Staphylococcus aureus subsp. aureus USA300_TCH959 ATCC BAA-1718 Unknown Gi02336 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Sauraur Human Microbiome Project (HMP), Medical, Human Pathogen 450394 19921 003058_GCAT 776 HOMD: tax_550 641736191 NZ_AASB00000000, AASB00000000 Draft Newbler/1.1.03.24 33.33X 256 2810 2975 1 1 32 USA Human skin ATCC, BEI Homo sapiens Skin Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus aureus MSSA MSSA Gi01867 Genome incomplete Public BCM-HGSC Highlander, SK sarahh@bcm.tmc.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Medical, Human Pathogen 1280 001075_GCAT 174938 0 0 0 0 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus equinus BACTERIAL Streptococcus bovis TX20005 TX20005 Streptococcus bovis TX20005 Gi01868 Genome incomplete Public BCM-HGSC NIH-NIAID Highlander, SK sarahh@bcm.tmc.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Animal Pathogen, Swine Pathogen, Medical, Human Pathogen 545774 30645 001076_GCAT 0 0 0 0 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Septicemia, Arthritis, Endocarditis, Meningitis Host Nonmotile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema Treponema pallidum BACTERIAL Treponema pallidum pallidum Dallas1 Dallas1 Treponema pallidum subsp. pallidum str. Dallas1 Gi01869 Genome incomplete Public BCM-HGSC NIH-NIAID Weinstock G gweinsto@watson.wustl.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Medical, Human Pathogen 491081 30649 001077_GCAT 0 54.1x 0 0 0 USA Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Syphilis Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema Treponema pallidum BACTERIAL Treponema pallidum pallidum SS14 SS14 Treponema pallidum subsp. pallidum SS14 Gc00789 Gi01870 Genome Complete and Published Public BCM-HGSC NIH-NIAID Weinstock G gweinsto@watson.wustl.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html TPASS 2008-05-22 BMC Microbiology 8, 76 Medical, Human Pathogen 455434 20067 001078_GCAT 293340 642555166 NC_010741 Complete 48.8x 1139 1079 1 0 52.8 USA Patient in Atlanta with secondary syphilis who did not respond to erythromycin therapy USA Patient in Atlanta with secondary syphilis who did not respond to erythromycin therapy Homo sapiens Patient with secondary syphilis Anaerobe Spiral-shaped Nonsporulating Mesophile 0.1-0.18 um 6-20 um gram- Free living Singles Syphilis Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema Treponema pallidum BACTERIAL Treponema pallidum pertenue CDC2 CDC2 Treponema pallidum subsp. pertenue str. CDC2 Gi01871 Genome incomplete Public BCM-HGSC NIH-NIAID Weinstock G gweinsto@watson.wustl.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Medical, Human Pathogen 491079 30651 001079_GCAT 0 42.7x 0 0 0 USA Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Yaws Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema Treponema pallidum BACTERIAL Treponema pallidum pertenue Gauthier Gauthier Treponema pallidum subsp. pertenue Gauthier Gi01872 Genome incomplete Public BCM-HGSC NIH-NIAID Weinstock G gweinsto@watson.wustl.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Medical, Human Pathogen 491080 30653 001080_GCAT 0 48.1x 0 0 0 USA Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Yaws Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema Treponema pallidum BACTERIAL Treponema pallidum pertenue SamoaD SamoaD yaws treponeme Gi01873 Genome incomplete Public BCM-HGSC NIH-NIAID Weinstock G gweinsto@watson.wustl.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Medical, Human Pathogen 491078 30671 SRS000279 001081_GCAT 0 0 0 0 USA Western Samoa in 1953 1953 Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Yaws Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema Treponema paraluiscuniculi BACTERIAL Treponema paraluiscuniculi Cuniculi A Cuniculi A Gi01874 Genome incomplete Public BCM-HGSC NIH-NIAID Weinstock G gweinsto@watson.wustl.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Medical, Human Pathogen 545776 30657 SRS000265 001082_GCAT 0 59.1x 0 0 0 USA case of syphilis in a rabbit Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Host Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella BACTERIAL Francisella tularensis holarctica FSC022 FSC022 Francisella tularensis subsp. holarctica FSC022 Gi01180 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Animal Pathogen, Medical, Human Pathogen, Biothreat 263 19015 001083_GCAT 7752 0 NZ_AAYD00000000 Draft 1900 0 32.1 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Pneumonia, Septicemia Host, Fresh water Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella BACTERIAL Francisella tularensis tularensis FSC033 FSC033 Francisella tularensis subsp. tularensis FSC033 Gi01181 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Animal Pathogen, Medical, Human Pathogen, Biothreat 263 19017 001084_GCAT 7752 0 NZ_AAYE00000000 Draft 1844 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Pneumonia, Septicemia Fresh water, Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella BACTERIAL Francisella tularensis holarctica FSC257 FSC257 Gi01182 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Animal Pathogen, Medical, Human Pathogen, Biothreat 263 001085_GCAT 7752 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Pneumonia, Septicemia Host, Fresh water Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis tularensis MA00-2987 MA00-2987 Francisella tularensis subsp. tularensis MA00-2987 Gi01183 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Animal Pathogen, Medical, Human Pathogen, Biothreat 543737 30443 001086_GCAT 643886001 NZ_ABRI00000000 Draft 10x 1868 0 32 USA human blood human blood Homo sapiens Blood Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Tularemia, Pneumonia, Septicemia Fresh water, Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella novicida BACTERIAL Francisella tularensis novicida FTG, UT01-4992 FTG, UT01-4992 Francisella novicida FTG Gi00256 Genome incomplete Public Los Alamos National Laboratory, CDC, Lawrence Livermore National Lab, BioHealthBase Brettin T brettin@lanl.gov Biothreat, Medical, Human Pathogen 563990 30447 001087_GCAT 348633 642979314 NZ_ABXZ00000000 Draft 1843 1734 32 USA hot springs hot springs Aerobe Rod-shaped Nonsporulating Mesophile Halophile gram- Free living Singles Tularemia Fresh water, Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella novicida BACTERIAL Francisella tularensis novicida GA99-3548 GA99-3548 Francisella novicida GA99-3548 Gi01184 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Biothreat, Medical, Human Pathogen 442346 19573 001088_GCAT 0 NZ_ABAH00000000 Draft 1845 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile Halophile gram- Free living Singles Tularemia Fresh water, Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella novicida BACTERIAL Francisella tularensis novicida GA99-3549 GA99-3549 Francisella novicida GA99-3549 Gi01185 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Biothreat, Medical, Human Pathogen 430558 19019 001089_GCAT 0 NZ_AAYF00000000 Draft 1897 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile Halophile gram- Free living Singles Tularemia Fresh water, Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis holarctica FSC200 FSC200 Francisella tularensis subsp. holarctica FSC200 Gi01160 Genome incomplete Public Univ of Washington Ftulh Biothreat, Medical, Human Pathogen 351581 16087 001090_GCAT 641736187 NZ_AASP00000000 Draft 2000 2086 32 USA Patient with type B tularemia Patient with type B tularemia Homo sapiens Patient with type B tularemia Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Tularemia Host, Fresh water Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei MSHR305 MSHR305 Burkholderia pseudomallei 305 Gi02290 Genome incomplete Public Los Alamos National Laboratory, DOE Joint Genome Institute Brettin T brettin@lanl.gov BURPS Animal Pathogen, Medical, Human Pathogen 425067 18775 003012_GCAT 206145 640612222 NZ_AAYX00000000 Draft 7453 7500 67 Sanger USA Autopsy sample from the brain of a fatal melioidosis encephalomyelitis case at the Royal Darwin Hospital, Northern Territory, Australia Australia Northern Territory, Australia -12.354729 130.88165 Homo sapiens Brain Aerobe Rod-shaped Mesophile gram- Free living Melioidosis Soil Motile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium liflandii BACTERIAL Mycobacterium liflandii 128FXT 128FXT Mycobacterium liflandii 128FXT Gi02288 Genome incomplete Public Monash Univ Animal Pathogen, Medical, Frog Pathogen 459424 20227 003010_GCAT 0 0 0 0 Sanger Australia Colony of African clawed frogs Colony of African clawed frogs Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Systemic disease Host 32 Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium marinum BACTERIAL Mycobacterium marinum DL240490 DL240490 Mycobacterium marinum DL240490 Gi02289 Genome incomplete Public Monash Univ Fish Pathogen, Medical, Human Pathogen 459420 20229 003011_GCAT 0 0 0 0 Sanger Australia "European seabass, Dicentrarchus labrax from the Red Sea" European seabass, Dicentrarchus labrax from the Red Sea Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Fish Tuberculosis-like infection, Skin infection Host 32 Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium ulcerans BACTERIAL Mycobacterium ulcerans 1615 1615 Mycobacterium ulcerans 1615 Gi02291 Genome incomplete Public Monash Univ Medical, Human Pathogen 459428 20231 003013_GCAT 1615 0 0 0 0 Sanger Australia Malaysia Malaysia Malaysia Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Buruli ulcer Host 32 Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus lentus BACTERIAL Bacillus lentus PS5 PS5 Bacillus lentus PS5 Gi02292 Genome incomplete Public Boo Ali sina Univ Biotechnological 456487 19977 003014_GCAT 242813 0 0 0 0 Sanger Iran Rod-shaped Sporulating Mesophile gram+ Free living Alkaliphile Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Aurantimonadaceae Fulvimarina Fulvimarina pelagi BACTERIAL Fulvimarina pelagi HTCC2506 HTCC2506 Fulvimarina pelagi HTCC2506 DSM 15513, HTCC2506, ATCC BAA-666 Gi00844 Genome incomplete Public J. Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm FP Marine Microbial Initiative (MMI), Environmental 314231 13506 001093_GCAT 77907 639857001 NZ_AATP00000000 Draft 3800 3871 61 USA Seawater collected from a depth of 10m at the Bermuda Atlantic Time Series station in the Sargasso Sea "Sargasso Sea, Atlantic Ocean, BATS" Surface, 10 m Aerobe Rod-shaped Mesophile gram- Free living None Marine 30 Nonmotile Chemoheterotroph Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum BACTERIAL Fusobacterium nucleatum polymorphum ATCC 10953 ATCC 10953 Fusobacterium nucleatum subsp. polymorphum ATCC 10953 ATCC 10953 Yes Gi00264 Genome incomplete Public BCM-HGSC, UCLA NIH-NIDCR Highlander, SK sarahh@bcm.tmc.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Fnucp Medical, Human Pathogen 76857 17261 001094_GCAT 11324 641736256 NZ_AARG00000000 Draft 13x 15 2440 2476 1 1 27 USA Homo sapiens Oral Mouth Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Periodontal infection Oral microflora, Host Nonmotile Pathogen Chemoorganotroph Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum BACTERIAL Fusobacterium nucleatum vincentii ATCC 49256 ATCC 49256 Fusobacterium nucleatum subsp. vincentii ATCC 49256 ATCC 49256 Yes Gi00265 Genome incomplete Public Integrated Genomics Inc NIH FNV Medical, Human Pathogen 209882 1419 001095_GCAT 111436 638341097 NZ_AABF00000000 Draft 2118 2306 27 Sanger USA Human periodontal pocket Homo sapiens Oral Periodontal Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Periodontal infection Oral microflora, Host Nonmotile Pathogen Chemoorganotroph Bacteria Proteobacteria Betaproteobacteria Nitrosomonadales Gallionellaceae Gallionella Gallionella ferruginea BACTERIAL Gallionella ferruginea capsiferriformans TW-2 TW-2 Gi01557 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bioremediation, Environmental, Biotechnological 370405 001096_GCAT 198458 0 0 0 0 USA Aerobe Mesophile gram- Free living None Soil Iron oxidizer Chemolithoautotroph Bacteria Proteobacteria Betaproteobacteria Nitrosomonadales Gallionellaceae Gallionella Gallionella capsiferriformans BACTERIAL Gallionella ferruginea capsiferriformans ES-2 ES-2 Gallionella ferruginea ES-2 Gi02007 Genome incomplete Public DOE Joint Genome Institute DOE Emerson D demerson@bigelow.org Bioremediation, Environmental, Biotechnological 395494 32827 002636_GCAT 198458 0 NZ_ACSD00000000 Draft 64 3087 2943 52 USA iron contaminated groundwater in Michigan USA iron contaminated groundwater in Michigan Aerobe Rod-shaped Mesophile gram- Free living None Fresh water Motile Iron oxidizer Chemolithoautotroph Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis BACTERIAL Gardnerella vaginalis 594, ATCC 14018 594, ATCC 14018 Gardnerella vaginalis ATCC 14018 NCTC 10287, ATCC 14018 Yes Gi01273 Genome incomplete Public Stanford Univ Ellison Medical Foundation Hyman R rhyman@stanford.edu Medical, Human Pathogen 585528 001097_GCAT 12607 0 0 0 0 USA Vaginal secretions Vaginal secretions Homo sapiens Female Urogenital tract Vaginal secretions Vaginal Anaerobe Rod-shaped Mesophile gram+ Free living Bacterial vaginosis Host, Vagina microflora Fastidious Bacteria Planctomycetes Planctomycetacia Planctomycetales Planctomycetaceae Gemmata Gemmata sp. Wa1-1 BACTERIAL Gemmata sp. Wa1-1 Wa1-1 Gi00271 Genome incomplete Proprietary Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Wastewater treatment, Biotechnological 235140 001098_GCAT 0 0 0 0 USA Aerobe Sphere-shaped Nonsporulating Mesophile gram- Free living Clusters, Singles None Fresh water Motile Lack-peptidoglycan Chemoheterotroph Bacteria Planctomycetes Planctomycetacia Planctomycetales Planctomycetaceae Gemmata Gemmata obscuriglobus BACTERIAL Gemmata obscuriglobus UQM 2246 UQM 2246 Gemmata obscuriglobus UQM 2246 Gi00270 Genome incomplete Public J. Craig Venter Institute DOE Ward N nward@tigr.org GobsU Biotechnological, Wastewater treatment, Evolutionary 214688 20997 001099_GCAT 200073 641736268 NZ_ABGO00000000 Draft 9161 8170 67 USA Early 1980's from the surface waters of a freshwater dam in Queensland Australia 1980's Australia Early 1980's from the surface waters of a freshwater dam in Queensland Australia Aerobe Sphere-shaped Nonsporulating Mesophile gram- Free living Clusters, Singles None Fresh water 28 Motile Lack-peptidoglycan Chemoheterotroph Bacteria Deferribacteres Deferribacteres (class) Deferribacterales Deferribacteraceae Geovibrio BACTERIAL Geovibrio thiophilus AAFu3T AAFu3T DSM 11263, ATCC BAA-311 Yes Gi01619 Genome incomplete Public J. Craig Venter Institute Evolutionary 139438 001100_GCAT 25709 0 Complete 0 0 50.2 USA Methanogenic mixed culture growing with acetone Methanogenic mixed culture growing with acetone Spiral-shaped Nonsporulating Mesophile gram- Free living None Motile Sulfur reducer Bacteria Gemmatimonadetes Gemmatimonadetes (class) Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca BACTERIAL Gemmatimonas aurantiaca T-27T T-27T JCM 11422T, NBRC 100505, DSM 14586T Yes Gc00976 Gi01301 Genome Complete and Published Public NITE Fujita N fujita-nobuyuki@nite.go.jp GAU 2009-04-01 Unpublished Wastewater treatment, Biotechnological 379066 18501 001101_GCAT 643692024 NC_012489 Complete 4636 3989 1 0 64 Japan Anaerobic-aerobic sequential batch reactor under enhanced biological phosphorus removal conditions for wastewater treatment Anaerobic-aerobic sequential batch reactor under enhanced biological phosphorus removal conditions for wastewater treatment Aerobe Rod-shaped Nonsporulating Mesophile 6.5 - 9.5 gram- Free living None 25 - 35 Motile EBPR Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Geobacteraceae Geobacter Geobacter sp. FRC-32 BACTERIAL Geobacter sp FRC-32 FRC-32 Geobacter sp. FRC-32 Gc00945 Gi00944 Genome Complete and Published Public DOE Joint Genome Institute DOE Kostka J jkostka@ocean.fsu.edu Geob 2009-01-27 Unpublished Environmental, Biotechnological, Bioremediation 316067 16263 001102_GCAT 163742 643348554 NC_011979 Complete 10x 4304 3798 1 0 53 Sanger USA Uranium-contaminated subsurface at US Uranium-contaminated subsurface at US Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Soil, Sediment, Fresh water Motile Iron reducer, Uranium reducer Chemolithotroph Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Geobacteraceae Geobacter Geobacter bemidjiensis BACTERIAL Geobacter bemidjiensis Bem Bem Geobacter bemidjiensis Bem ATCC BAA-1014, DSM 16622 Yes Gc00849 Gi01650 Genome Complete and Published Public DOE Joint Genome Institute DOE Lovley D dlovley@microbio.umass.edu Gbem 2008-08-19 Unpublished Bioremediation, Environmental, Biotechnological 404380 17707 001103_GCAT 230617 642555129 NC_011146 Complete 11x 4615 4106 1 0 60.3 Sanger USA Subsurface sediments collected in Bemidji Minnesotta USA Subsurface sediments collected in Bemidji Minnesotta 47.482959 -94.879704 Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Soil, Sediment 30 Nonmotile Iron reducer Chemolithotroph Bacteria Firmicutes Bacilli Bacillales Bacillaceae Geobacillus Geobacillus stearothermophilus BACTERIAL Geobacillus stearothermophilus L14 L14 Geobacillus stearothermophilus L14 Gi01651 Genome incomplete Public Tarbiat Modares Univ Bioremediation, Environmental, Biotechnological 405537 17695 001104_GCAT 0 0 0 0 Iran Anaerobe Rod-shaped Sporulating Thermophile gram+ Free living None Soil Motile Chemoorganotroph Bacteria Cyanobacteria Chroococcales Gloeothece Gloeothece membranacea BACTERIAL Gloeothece sp PCC 6909 PCC 6909 Gloeothece sp. PCC 6909 ATCC27152 Gi00845 Genome incomplete Public UCSC, J. Craig Venter Institute Moore Foundation Zehr JP http://oceansci.ucsc.edu/faculty/zehr.html Marine Microbial Initiative (MMI), Environmental 197232 13575 001108_GCAT 0 2500 0 0 USA Cave wall in St. Kitts in Eastern Caribbean Cave wall in St. Kitts in Eastern Caribbean 17.15 -62.45 Aerobe Rod-shaped Mesophile gram- Free living None Marine Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Gluconacetobacter Gluconacetobacter diazotrophicus BACTERIAL Gluconacetobacter diazotrophicus PAL5 PAL5 Gluconacetobacter diazotrophicus PAl 5 ATCC 49037 Yes Gc00695 Gi00277 Genome Complete and Published Public LNCC/MCT, UENF, AGROBIOLOGIA, UFRJ, UERJ CNPq, MCT, FAPERJ Ferreira PCG paulof@bioqmed.ufrj.br GDI 2007-12-12 Unpublished Agricultural 272568 377 001109_GCAT 238788 641228493 NC_010125 Complete 3944 4064 1 2 66 Brazil Sugarcane roots in Brazil Brazil Sugarcane roots in Brazil Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Mutualistic Sugarcane Singles None Host 30 Motile Acetic-acid, Nitrogen fixation Diazotroph Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Gluconacetobacter Gluconacetobacter diazotrophicus BACTERIAL Gluconacetobacter diazotrophicus PAL5 PAL5 ATCC 49037 Yes Gi00278 Genome incomplete Public Univ of Wisconsin Herlache T tcherlache@facstaff.wisc.edu Agricultural 272568 001110_GCAT 238788 0 2700 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Mutualistic Sugarcane Singles None Host 30 Motile Acetic-acid, Nitrogen fixation Diazotroph Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Gluconacetobacter Gluconacetobacter diazotrophicus BACTERIAL Gluconacetobacter diazotrophicus PAL5 PAL5 Gluconacetobacter diazotrophicus PAl 5 NCCB 89154, DSM 5601, LMG 7603, CCUG 37298, ATCC 49037 Yes Gc00869 Gi02011 Genome Complete and Published Public DOE Joint Genome Institute DOE Triplett EW ewt@ufl.edu GdiaDRAFT 2008-10-16 Unpublished Agricultural 272568 21071 002640_GCAT 238788 643348555 NC_011365 Complete 3887 3676 1 1 66.4 USA sugarcane roots in Brazil Brazil sugarcane roots in Brazil Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Mutualistic Sugarcane Singles None Host 30 Motile Acetic-acid, Nitrogen fixation Diazotroph Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Aggregatibacter Aggregatibacter aphrophilus BACTERIAL Aggregatibacter aphrophilus NJ8700 NJ8700 Aggregatibacter aphrophilus NJ8700 Gc01010 Gi00945 Genome Complete and Published Public American Museum of Natural History DOE DeSalle R desalle@amnh.org NT05HA 2009-07-02 J. Bacteriology 191, 4693-4694 Medical 634176 36579 001111_GCAT 9637 0 NC_012913 Complete Level 6: Finished Newbler 25x Glimmer 3 2313 2336 1 0 42.23 454 USA oral flora of a healthy individual Jeffrey Kaplan, kaplanjb@umdnj.edu Homo sapiens Healthy Oral Facultative Rod-shaped Mesophile gram- Free living Endocarditis Oral microflora, Host Nonmotile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi PittDD PittDD Haemophilus influenzae PittDD Gi01490 Genome incomplete Public Allegheny-Singer Research Institute Medical, Human Pathogen 374834 16392 001112_GCAT 0 1760 0 37.9 USA Middle-ear effusion of a child in Pittsburgh Robert Wadowsky USA Middle-ear effusion of a child in Pittsburgh 40.438423 -80.001933 Homo sapiens Child Ear Facultative Rod-shaped Mesophile gram- Free living Sinusitis, Septicemia, Chronic bronchitis, Meningitis, Otitis media Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa PK6 PK6 Pseudomonas aeruginosa PKS6 Gi01695 Genome incomplete Public Allegheny-Singer Research Institute Animal Pathogen, Medical, Human Pathogen 419110 18571 001113_GCAT 0 0 0 0 USA Mutant derivative of Pseudomonas aeruginosa strain PA01 Mutant derivative of Pseudomonas aeruginosa strain PA01 Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Opportunistic infection Soil, Host, Fresh water 25 - 30 Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi 22.1-21, ST176 22.1-21, ST176 Haemophilus influenzae 22.1-21 Gi01491 Genome incomplete Public Allegheny-Singer Research Institute CGSHi Human Pathogen, Medical 374927 16398 001114_GCAT 226032 640612215 NZ_AAZD00000000 Draft 25x 1850 2370 37.9 454 USA Nasopharynx of a healthy child Nasopharynx of a healthy child Homo sapiens Child Healthy Airways Nasopharynx Facultative Rod-shaped Mesophile gram- Free living Sinusitis, Septicemia, Otitis media, Meningitis, Chronic bronchitis Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi PittAA PittAA Haemophilus influenzae PittAA Gi01492 Genome incomplete Public Allegheny-Singer Research Institute CGSHiAA Medical, Human Pathogen 374928 16399 001115_GCAT 640612218 NZ_AAZG00000000 Draft 1900 2102 38.2 454 USA Middle-ear effusion of a child in Pittsburgh USA Middle-ear effusion of a child in Pittsburgh 40.438423 -80.001933 Homo sapiens Child Ear Facultative Rod-shaped Mesophile gram- Free living Sinusitis, Septicemia, Chronic bronchitis, Meningitis, Otitis media Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi PittBB PittBB Haemophilus influenzae PittBB Gi01495 Genome incomplete Public Allegheny-Singer Research Institute Medical, Human Pathogen 374929 16402 001118_GCAT 0 0 0 0 USA Middle-ear effusion of a child in Pittsburgh USA Middle-ear effusion of a child in Pittsburgh 40.438423 -80.001933 Homo sapiens Child Ear Facultative Rod-shaped Mesophile gram- Free living Sinusitis, Septicemia, Chronic bronchitis, Meningitis, Otitis media Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi PittCC PittCC Haemophilus influenzae PittCC Gi01696 Genome incomplete Public Allegheny-Singer Research Institute Medical, Human Pathogen 410252 18099 001119_GCAT 0 0 0 0 USA Middle-ear effusion of a child in Pittsburgh USA Middle-ear effusion of a child in Pittsburgh 40.438423 -80.001933 Homo sapiens Child Ear Facultative Rod-shaped Mesophile gram- Free living Sinusitis, Septicemia, Chronic bronchitis, Meningitis, Otitis media Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi PittFF PittFF Haemophilus influenzae PittFF Gi01697 Genome incomplete Public Allegheny-Singer Research Institute Medical, Human Pathogen 410253 18101 001120_GCAT 0 0 0 0 USA External auditory canal of an otorrheic child in Pittsburgh who had spontaneously perforated his tympanic membrane USA External auditory canal of an otorrheic child in Pittsburgh who had spontaneously perforated his tympanic membrane 40.438423 -80.001933 Homo sapiens Child Ear Facultative Rod-shaped Mesophile gram- Free living Sinusitis, Septicemia, Chronic bronchitis, Meningitis, Otitis media Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi PittJJ PittJJ Haemophilus influenzae PittJJ Gi01698 Genome incomplete Public Allegheny-Singer Research Institute Medical, Human Pathogen 410254 18103 001121_GCAT 0 0 0 0 USA Middle-ear effusion of a child in Pittsburgh USA Middle-ear effusion of a child in Pittsburgh 40.438423 -80.001933 Homo sapiens Child Ear Facultative Rod-shaped Mesophile gram- Free living Sinusitis, Septicemia, Chronic bronchitis, Meningitis, Otitis media Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi 3655 3655 Haemophilus influenzae 3655 Gi01496 Genome incomplete Public Allegheny-Singer Research Institute CGSHi3655 Medical, Human Pathogen 375177 16395 001122_GCAT 640612217 NZ_AAZF00000000 Draft 25x 1850 2068 38 454 USA Middle ear effusion of a child in Missouri with acute otitis media USA Middle ear effusion of a child in Missouri with acute otitis media Homo sapiens Child Patient with acute otitis media Ear Facultative Rod-shaped Mesophile gram- Free living Sinusitis, Septicemia, Chronic bronchitis, Meningitis, Otitis media Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi 22.4-21, ST165 22.4-21, ST165 Haemophilus influenzae R3021 Gi01497 Genome incomplete Public Center for Genomic Sciences CGSHi22421 Medical, Human Pathogen 375063 16396 001123_GCAT 219021 640612216 NZ_AAZE00000000 Draft 25x 1890 2203 37.9 454 USA Nasopharynx of the same healthy child Nasopharynx of the same healthy child Homo sapiens Child Healthy Airways Nasopharynx Facultative Rod-shaped Mesophile gram- Free living Sinusitis, Septicemia, Chronic bronchitis, Meningitis, Otitis media Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi PittHH PittHH Haemophilus influenzae PittHH Gi01498 Genome incomplete Public Allegheny-Singer Research Institute CGSHiHH Medical, Human Pathogen 374932 16403 001124_GCAT 640612207 NZ_AAZH00000000 Draft 35x 1830 2065 38 454 USA Middle-ear effusion of a child in Pittsburgh USA Middle-ear effusion of a child in Pittsburgh Homo sapiens Child Ear Facultative Rod-shaped Mesophile gram- Free living Sinusitis, Septicemia, Chronic bronchitis, Meningitis, Otitis media Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi PittII PittII Haemophilus influenzae PittII Gi01499 Genome incomplete Public Allegheny-Singer Research Institute CGSHiII Medical, Human Pathogen 374933 16404 001125_GCAT 220466 640612208 NZ_AAZI00000000 Draft 1954 2158 38 USA Middle-ear effusion of a child in Pittsburgh USA Middle-ear effusion of a child in Pittsburgh 40.438423 -80.001933 Homo sapiens Child Ear Facultative Rod-shaped Mesophile gram- Free living Otitis media, Meningitis, Septicemia, Sinusitis, Chronic bronchitis Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi R3021 R3021 Haemophilus influenzae 22.4-21 Gi01500 Genome incomplete Public Allegheny-Singer Research Institute CGSHiR3021 Medical, Human Pathogen 375432 16423 001126_GCAT 640612209 NZ_AAZJ00000000 Draft 1851 2402 38 USA Nasopharynx of a healthy individual Nasopharynx of a healthy individual Homo sapiens Adult Healthy Airways Nasopharynx Facultative Rod-shaped Mesophile gram- Free living Sinusitis, Septicemia, Chronic bronchitis, Meningitis, Otitis media Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus BACTERIAL Haemophilus influenzae NTHi 3224A 3224A Gi00284 Genome incomplete Public Ohio State Univ NIH-NIDCD Dyer D david-dyer@ouhsc.edu Medical, Human Pathogen 727 001127_GCAT 255295 0 0 0 0 USA Facultative Rod-shaped Mesophile gram- Free living Sinusitis, Septicemia, Chronic bronchitis, Meningitis, Otitis media Host Nonmotile Pathogen Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Flavobacterium BACTERIAL Flavobacterium columnare ATCC 49512 ATCC 49512 ATCC 49512 Gi01994 Genome incomplete Public Mississippi State Univ USDA/CSREES Dyer D david-dyer@ouhsc.edu Fish Pathogen 996 002623_GCAT 107628 0 0 0 32 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Columnaris disease Fresh water Motile Pathogen Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Flavobacterium BACTERIAL Flavobacterium branchiophilum FL15 FL15 Gi02340 Genome incomplete Public INRA, Genoscope Barbe V vbarbe@genoscope.cns.fr Fish Pathogen 55197 003062_GCAT 2329 0 2800 0 0 Sanger France Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Gill disease Fresh water Motile Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium BACTERIAL Clostridium sticklandii DSM 519 DSM 519 Clostridium sticklandii DSM 519 NCIB 10654, ATCC 12662, DSM 519 Yes Gi02341 Genome incomplete Public Genoscope Fonknechten N fonk@genoscope.cns.fr Biotechnological 1511 28575 003063_GCAT 14175 0 In progress 12x 3800 0 0 Sanger France Mud water Mud water Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Soil, Fresh water, Host 30 - 37 Motile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae R2846 R2846 Haemophilus influenzae R2846 Gi00282 Genome incomplete Public Univ of Washington, SBRI Smith A http://www.sbri.org/research/a_smith.asp Hflu Medical, Human Pathogen 262727 9620 001128_GCAT 104951 638341100 NZ_AADO00000000 Draft 1800 1764 38 Sanger USA Middle ear fluid of a child with acute otitis media Middle ear fluid of a child with acute otitis media Homo sapiens Child Patient with acute otitis media Ear Facultative Rod-shaped Mesophile gram- Free living Sinusitis, Meningitis, Otitis media, Septicemia Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae R2866 R2866 Haemophilus influenzae R2866 Gi00283 Genome incomplete Public SBRI, Univ of Washington Smith A http://www.sbri.org/research/a_smith.asp Hflu Medical, Human Pathogen 262728 9621 001129_GCAT 129141 638341101 NZ_AADP00000000 Draft 1890 1896 38.1 Sanger USA Blood of a child with meningitis Blood of a child with meningitis Homo sapiens Child Patient with meningitis Blood Facultative Rod-shaped Mesophile gram- Free living Sinusitis, Meningitis, Otitis media, Septicemia Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus BACTERIAL Haemophilus influenzae serotype B 10810 10810 Gi00819 Genome incomplete Public Sanger Institute, Univ of Oxford Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical, Human Pathogen 727 001130_GCAT 255295 0 2100 0 0 United Kingdom Facultative Rod-shaped Mesophile gram- Free living Meningitis, Respiratory infection Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus BACTERIAL Haemophilus parainfluenzae T3T1 T3T1 Gi00820 Genome incomplete Public Sanger Institute, Univ of Oxford Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical 729 001131_GCAT 107276 0 2000 0 0 United Kingdom Facultative Rod-shaped Mesophile gram- Free living None Host Nonmotile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Histophilus Histophilus somni BACTERIAL Haemophilus somnus 2336 2336 Haemophilus somnus 2336 Gc00743 Gi00287 Genome Complete and Published Public Univ of Oklahoma, DOE Joint Genome Institute, Virginia Polytechnic Institute USDA/CSREES Inzana TJ tinzana@vt.edu HSM 2008-02-26 Unpublished Animal Pathogen, Medical, Human Pathogen 228400 388 001132_GCAT 2336 641522630 NC_010519 Complete 9.7x 2263 2108 1 0 37.4 Sanger USA Lung of a calf which had pneumonia Lung of a calf which had pneumonia Facultative Rod-shaped Mesophile gram- Free living Singles Pneumonia, Arthritis, Myocarditis Host 35 - 37 Nonmotile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter BACTERIAL Helicobacter mustelae ATCC 43772 ATCC 43772 Helicobacter mustelae ATCC 43772 Gi00294 Genome incomplete Public Sanger Institute, Univ College Cork Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical, Human Pathogen 217 13426 001133_GCAT 11057 0 Complete 1690 0 0 United Kingdom Gastric mucosa of a ferret Gastric mucosa of a ferret Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric Ulcerations Host Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter BACTERIAL Helicobacter pylori gastric cancer1 gastric cancer1 Gi00571 Genome incomplete Public Univ of Uppsala, Karolinska Institute SSF Medical, Human Pathogen 210 001134_GCAT 140372 0 0 0 0 Sweden Homo sapiens Gastrointestinal tract Stomach Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Human stomach, Host Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter BACTERIAL Helicobacter pylori gastric cancer2 gastric cancer2 Gi00572 Genome incomplete Public Univ of Uppsala, Karolinska Institute SSF Medical, Human Pathogen 210 001135_GCAT 140372 0 0 0 0 Sweden Homo sapiens Gastrointestinal tract Stomach Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Human stomach, Host Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter BACTERIAL Helicobacter pylori duodenal ulcer duodenal ulcer Gi00295 Genome incomplete Public Univ of Uppsala, Karolinska Institute SSF Medical, Human Pathogen 210 001136_GCAT 140372 0 0 0 0 Sweden Homo sapiens Gastrointestinal tract Stomach Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Human stomach, Host Motile Pathogen Bacteria Firmicutes Clostridia Clostridiales Heliobacteriaceae Heliobacillus BACTERIAL Heliobacillus mobilis Heliobacillus mobilis Gi00296 Genome incomplete Proprietary Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Biotechnological 28064 13236 001137_GCAT 111095 0 4200 4500 50.3 USA Anaerobe Rod-shaped Sporulating Mesophile gram- Free living None Soil Motile Photosynthetic, Phototroph Bacteria Firmicutes Clostridia Clostridiales Heliobacteriaceae Heliobacterium Heliobacterium modesticaldum BACTERIAL Heliobacterium modesticaldum Ice1 Ice1 Heliobacterium modesticaldum Ice1 DSM 9504, ATCC 51547 Yes Gc00721 Gi00725 Genome Complete and Published Public Arizona State Univ, TGen NSF Blankenship RE Blankenship@asu.edu HM 2008-02-11 J. Bacteriology 190, 4687-96 Environmental 498761 13427 001138_GCAT 13927 641522632 NC_010337 Complete 16.9x 3075 3269 1 0 57 USA hot spring microbial mats and volcanic soil in Iceland Iceland hot spring microbial mats and volcanic soil in Iceland Anaerobe Rod-shaped Sporulating Thermophile gram- Free living None Soil, Fresh water, Hot spring 50 - 52 Motile Phototroph, Photosynthetic Bacteria Chloroflexi Chloroflexi (class) Chloroflexales Chloroflexaceae Heliothrix BACTERIAL Heliothrix oregonensis Gi00946 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 1110 001139_GCAT 0 5000 0 0 USA Alkaline hot springs Alkaline hot springs Facultative Filament-shaped Mesophile Halophile Free living None Fresh water, Hot spring Motile Phototroph, Photosynthetic Bacteria Proteobacteria Betaproteobacteria Burkholderiales Oxalobacteraceae Herbaspirillum BACTERIAL Herbaspirillum seropedicae Z67 Z67 Herbaspirillum seropedicae ATCC35892 Yes Gi01013 Genome incomplete Public Genopar Consortium Pedrosa FO fpedrosa@bio.ufpr.br Biotechnological 964 15704 001140_GCAT 7304 0 0 0 0 Brazil Roots of rice plants Roots of rice plants Aerobe Spiral-shaped Mesophile gram- Free living None Host, Soil Motile Nitrogen fixation Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Intrasporangiaceae Janibacter Janibacter sp. HTCC2649 BACTERIAL Janibacter sp. HTCC2649 HTCC2649 Janibacter sp. HTCC2649 HTCC2649 Gi00846 Genome incomplete Public Oregon State Univ, J. Craig Venter Institute Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm JNB Marine Microbial Initiative (MMI), Environmental 313589 13546 001143_GCAT 149050 638341107 NZ_AAMN00000000 Draft 4228 4200 68.4 Sanger USA Sargasso Sea, Atlantic Ocean, BATS at a depth of 10m "Sargasso Sea, Atlantic Ocean, BATS" 10 meters Mesophile gram+ Free living None Marine Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Klebsiella Klebsiella oxytoca BACTERIAL Klebsiella oxytoca M5al VJSK009 VJSK009 Klebsiella oxytoca str. M5al substr. VJSK009 Gi00304 Genome incomplete Public Washington Univ NIH-NIAID Clifton S sclifton@watson.wustl.edu Biotechnological, Medical, Human Pathogen 290337 12627 001146_GCAT 0 6000 0 0 USA Early 1950's from a 2-3 butanediol fermentation 1950 Early 1950's from a 2-3 butanediol fermentation Intestinal tract Facultative Rod-shaped Mesophile gram- Free living Spontaneous infectious spondylodiscitis Intestinal microflora Nonmotile Pathogen, Non-Pathogen, Prototrophic, Dinitrogen-fixing Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Klebsiella Klebsiella pneumoniae BACTERIAL Klebsiella pneumoniae Kp342 Kp342 Klebsiella pneumoniae 342 Gc00841 Gi01252 Genome Complete and Published Public J. Craig Venter Institute NSF Fouts DE dfouts@jcvi.org 2008-09-24 PLoS Genetics 4, e1000141 Animal Pathogen, Medical, Cattle Pathogen 507522 28471 001148_GCAT 339583 643348560 NC_011283 Complete 23 kb, 1015 kb Celera Assembler 8x Glimmer 5641 5425 1 2 57.3 USA interior of nitrogen-efficient maize plants 1950's interior of nitrogen-efficient maize plants Intestinal tract Facultative Rod-shaped Mesophile gram- Free living Urinary tract infection, Bacteremia, Pneumonia Mouth microflora, Skin microflora, Fresh water, Host, Intestinal microflora, Soil Nonmotile Pathogen, Lactose fermenting Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Klebsiella BACTERIAL Klebsiella pneumoniae Gi00305 Genome incomplete Proprietary Genome Therapeutics Animal Pathogen, Medical, Cattle Pathogen 573 001149_GCAT 277703 0 Complete 0 0 40 USA Intestinal tract Facultative Rod-shaped Mesophile gram- Free living Urinary tract infection, Bacteremia, Pneumonia Mouth microflora, Skin microflora, Fresh water, Host, Intestinal microflora, Soil Nonmotile Pathogen, Lactose fermenting Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus helveticus BACTERIAL Lactobacillus helveticus CNRZ32 CNRZ32 Lactobacillus helveticus Gi00315 Genome incomplete Public Univ of Wisconsin, Utah State Univ Steele J http://www.wisc.edu/foodsci/faculty/steele/ Food industry, Biotechnological 326425 13430 001150_GCAT 0 2300 0 0 USA Intestinal tract Facultative Rod-shaped Mesophile gram+ Free living Chains None Intestinal microflora Nonmotile Probiotic Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus helveticus BACTERIAL Lactobacillus helveticus DPC 4571 DPC 4571 Lactobacillus helveticus DPC 4571 Gc00690 Gi01652 Genome Complete and Published Public MWG-Biotech, Teagasc Beresford T tom.beresford@teagasc.ie lhv 2007-11-15 J. Bacteriol. 190, 727-35 Food industry, Biotechnological 405566 17811 001151_GCAT 252324 641228495 NC_010080 Complete 1 Kb, 2-2.5 Kb Glimmer 7.7x 2080 1903 1 0 37.1 Ireland Intestinal tract Facultative Rod-shaped Mesophile gram+ Free living Chains None Intestinal microflora Nonmotile Probiotic Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus reuteri BACTERIAL Lactobacillus reuteri 100-23 100-23 Lactobacillus reuteri 100-23 Gi00762 Genome Permanent Draft Public DOE Joint Genome Institute, Univ of Otago DOE Tannock G gerald.tannock@stonebow.otago.ac.nz Lreu Food industry, Biotechnological 349123 13431 001152_GCAT 354712 638341112 NZ_AAPZ00000000 Complete Level 1: Standard Draft 11x 2174 2114 38 Sanger USA Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Mesophile gram+ Free living None Mammalian intestinal microflora, Birds intestinal microflora, Human intestinal microflora, Host Nonmotile Probiotic, Non-Pathogen Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus rhamnosus BACTERIAL Lactobacillus rhamnosus HN001 HN001 Lactobacillus rhamnosus HN001 Gi00316 Genome incomplete Public Univ of Otago, New Zealand Dairy Board Collett MA michael.collett@fonterra.com Food industry, Biotechnological 486408 29219 001154_GCAT 335393 642979366 NZ_ABWJ00000000 Draft 36x 2874 2758 1 2 46 New Zealand Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Mesophile gram+ Free living None Intestinal microflora Nonmotile Probiotic, Non-Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus garvieae BACTERIAL Lactococcus garvieae ATCC 49156 ATCC 49156 Lactococcus garvieae ATCC 49156 ATCC 49156 No Gi01892 Genome incomplete Public Kitasato Univ Fish Pathogen, Medical, Mammal Pathogen, Human Pathogen 420889 18705 001155_GCAT 0 Complete 0 0 0 Japan Facultative Coccus-shaped Mesophile gram+ Free living Lactococcosis, Mastitis Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus garvieae BACTERIAL Lactococcus garvieae Lg2 Lg2 Lactococcus garvieae Lg2 Gi01893 Genome incomplete Public Kitasato Univ Fish Pathogen, Medical, Mammal Pathogen, Human Pathogen 420890 18707 001156_GCAT 170779 0 Complete 0 0 0 Japan Facultative Coccus-shaped Mesophile gram+ Free living Lactococcosis, Mastitis Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Legionellales Legionellaceae Tatlockia BACTERIAL Legionella micdadei Gi00825 Genome incomplete Public IMB, Jena Gloeckner G gernot@imb-jena.de Medical, Human Pathogen 451 001157_GCAT 52462 0 Complete 0 0 0 Germany Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Pneumonia Fresh water Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Legionellales Legionellaceae Legionella BACTERIAL Legionella longbeachae NSW150 NSW150 Legionella longbeachae Gi01014 Genome incomplete Public Institut Pasteur Medical, Human Pathogen 450 16090 001158_GCAT 100249 0 Complete 0 0 0 France Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Legionellosis, Pneumonia Soil, Fresh water, Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Legionellales Legionellaceae Legionella BACTERIAL Legionella anisa Gi01015 Genome incomplete Public Institut Pasteur Medical 28082 001159_GCAT 119386 0 Complete 0 0 0 France Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Fresh water Motile Non-Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Legionellales Legionellaceae Legionella BACTERIAL Legionella hackeliae LLAP10 LLAP10 Legionella hackeliae Gi00826 Genome incomplete Public IMB, Jena Gloeckner G gernot@imb-jena.de Medical, Human Pathogen 449 13436 001160_GCAT 8009 0 Complete 0 0 0 Germany Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Pneumonia, Respiratory infection Fresh water, Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila BACTERIAL Legionella pneumophila 2300/99 2300/99 serogroup 1 Legionella pneumophila 2300/99 Alcoy Gi01894 Genome incomplete Public Valencia Univ Medical, Human Pathogen 423212 18743 001162_GCAT 0 0 0 0 Spain endemic in Spanish areas Spain endemic in Spanish areas Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Legionnaire's disease Soil, Host, Fresh water, Fresh water, Biofilm Motile Pathogen Chemoorganotroph Bacteria Lentisphaerae Lentisphaerales Lentisphaera Lentisphaera araneosa BACTERIAL Lentisphaera araneosa HTCC2155 HTCC2155 Lentisphaera araneosa HTCC2155 HTCC2155 Gi00847 Genome incomplete Public J. Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm LNTAR Environmental, Marine Microbial Initiative (MMI), Evolutionary 313628 13437 001163_GCAT 111543 640963040 NZ_ABCK00000000 Draft 6021 5228 48.3 USA Coastal Pacific Ocean near Newport Oregon at a depth of 10m Coastal Pacific Ocean near Newport Oregon at a depth of 10m 10 m Aerobe Sphere-shaped Nonsporulating Mesophile gram- Free living None Coastal, Marine Nonmotile Chemoheterotroph Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Leptospiraceae Leptospira Leptospira interrogans BACTERIAL Leptospira interrogans pomona pomona Gi00848 Genome incomplete Public Univ of Oklahoma Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Medical, Animal Pathogen 44276 001164_GCAT 136361 0 5000 0 0 USA Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Leptospirosis Soil, Fresh water, Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Leptospiraceae Leptospira Leptospira biflexa BACTERIAL Leptospira biflexa Patoc 1 (Ames) Patoc 1 (Ames) Patoc Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' ATCC 23582 Yes Gc00818 Gi01016 Genome Complete and Published Public Monash Univ, Institut Pasteur Adler B Ben.Adler@med.monash.edu.au LBF 2008-02-13 PLoSs ONE 3 (2), E1607 Medical, Animal Pathogen 355278 16153 001165_GCAT 304980 642555136 NC_010842 Complete 7x 3603 3641 2 1 39 Sanger France "Stream water and kept in the culture collection at the National Animal Disease Center (NADC), Ames, IA since 1990" Stream water and kept in the culture collection at the National Animal Disease Center (NADC), Ames, IA since 1990 42.022864 -93.626792 Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Leptospirosis Fresh water, Soil, Host Motile Pathogen Bacteria Nitrospirae Nitrospira (class) Nitrospirales Nitrospiraceae Leptospirillum BACTERIAL Leptospirillum ferrodiazotrophum Gi00328 Metagenome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 412449 37907 001166_GCAT 0 Draft 960 0 0 Sanger USA "Richmond Mine, Iron Mountain CA from the Ultra Back A (UBA) site in June 2005" June 2005 USA Richmond Mine, Iron Mountain CA from the Ultra Back A (UBA) site in June 2005 36.778261 -119.417932 Mesophile gram- Free living None Fresh water Pink-colored, Iron oxidizer, Biofilm, Acidophile Bacteria Proteobacteria Betaproteobacteria Burkholderiales Leptothrix Leptothrix cholodnii BACTERIAL Leptothrix cholodnii SP-6 SP-6 Leptothrix cholodnii SP-6 ATCC 51168 No Gc00751 Gi01560 Genome Complete and Published Public DOE Joint Genome Institute DOE Emerson D demerson@bigelow.org Lcho 2008-03-25 Unpublished Bioremediation, Environmental, Biotechnological 395495 20039 001167_GCAT 258496 641522635 NC_010524 Complete 4909 4476 1 0 68.9 USA "Water and flocculent from an artificial iron seep in Ithaca, NY" USA Ithaca, NY 42.444589 -76.499268 Aerobe Filament-shaped Mesophile gram- Free living None Soil, Fresh water Motile Iron oxidizer Heterotroph Bacteria Firmicutes Bacilli Lactobacillales Leuconostocaceae Leuconostoc Leuconostoc citreum BACTERIAL Leuconostoc citreum KM20 KM20 Leuconostoc citreum KM20 Gc00724 Gi00329 Genome Complete and Published Public KRIBB Kim JF jfk@kribb.re.kr LCK 2008-03-12 J. Bacteriology 190, 3093-4 Food industry, Lactic acid production, Acetate production, Biotechnological, Ethanol production 349519 16062 001168_GCAT 641522636 NC_010471 Complete Phred/Phrap/Consed 1.2 Kb, 2 Kb, 40 Kb YACOP 1796 1914 1 4 39 Sanger Korea Baechu kimchi Jung-Sook Lee, KRIBB Baechu kimchi Facultative Sphere-shaped Nonsporulating Psychrotrophic gram+ Free living Singles None Nonmotile Antimicrobial activities Bacteria Firmicutes Bacilli Lactobacillales Leuconostocaceae Leuconostoc BACTERIAL Leuconostoc gasicomitatum Leuconostoc gasicomitatum LMG 18811 Gi01159 Genome incomplete Public Univ of Helsinki Paulin L http://www.biocenter.helsinki.fi/bi/DNA/contact.htm Acetate production, Biotechnological, Lactic acid production, Food industry, Ethanol production 115778 15732 001169_GCAT 28880 0 Complete 2000 1906 37 Finland Facultative Rod-shaped Nonsporulating Psychrotrophic 4.5 gram+ Free living None "4, 15" Nonmotile Antimicrobial activities Bacteria Cyanobacteria Oscillatoriales Leptolyngbya Leptolyngbya valderiana BACTERIAL Leptolyngbya valderiana BDU 20041 BDU 20041 Leptolyngbya valderiana BDU 20041 Gi01982 Genome incomplete Public NFMC NFMC office@nfmc.res.in LVAL 322866 19525 002609_GCAT 640963043 NZ_AAZV00000000 Draft 0 15 53.1 India "Bay of Bengal, at Point Calimare" India Bay of Bengal, at Point Calimare 12.065107 79.702147 Filament-shaped Mesophile gram- Free living None Fresh water Bacteria Cyanobacteria Oscillatoriales Lyngbya BACTERIAL Lyngbya aestuarii CCY9616 CCY9616 Lyngbya sp. PCC 8106 PCC8106 Gi00849 Genome incomplete Public Netherlands Institute of Ecology, J. Craig Venter Institute Moore Foundation Stal LJ http://www.nioo.nl/PPAGES/lstal/ L Marine Microbial Initiative (MMI), Environmental 313612 13409 001170_GCAT 173808 639857035 NZ_AAVU00000000 Draft 7036 6230 41 USA Intertidal zone in Mellum Germany Germany Mellum Germany 53.71278 8.13611 Intertidal Mesophile gram- Free living None Marine, Fresh water, Salt marsh Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria BACTERIAL Listeria ivanovii PAM55 PAM55 Listeria ivanovii Gi00331 Genome incomplete Public AGOWA, Univ of Wuerzburg, Univ de Leon, Institut Pasteur Glaser P http://www.dlvlaw.com/equipeeng/Philippe_Glaser.html Animal Pathogen, Medical, Human Pathogen 1638 13441 001171_GCAT 136109 0 Complete 3000 0 0 European Consortium Infected ewe Infected ewe Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles, Chains Abortion, Stillbirth Host Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes H7858 (meat isolate) H7858 (meat isolate) 4b Listeria monocytogenes str. 4b H7858 Gi00333 Genome incomplete Public J. Craig Venter Institute USDA Nelson KE http://www.tigr.org/~kenelson/ L Animal Pathogen, Cattle Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 267410 10752 001172_GCAT 101322 638341118 NZ_AADR00000000 Draft 2972 3267 38 Sanger USA Hot dog during an outbreak of listeriosis that occurred in multiple states in the USA in 1998-1999 USA Hot dog during an outbreak of listeriosis that occurred in multiple states in the USA in 1998-1999 Intestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles, Chains Food poisoning, Listeriosis Soil, Food, Intestinal microflora 30 - 37 Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes 1/2a F6854, frankfurter isolate 1/2a F6854, frankfurter isolate 1/2a Listeria monocytogenes str. 1/2a F6854 Gi00332 Genome incomplete Public J. Craig Venter Institute USDA Nelson KE http://www.tigr.org/~kenelson/ LMOf Animal Pathogen, Cattle Pathogen, Swine Pathogen, Poultry Pathogen, Medical 267409 10753 001173_GCAT 638341117 NZ_AADQ00000000 Draft 9.75X 2953 3055 37.8 Sanger USA Intestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles, Chains Food poisoning Soil, Intestinal microflora, Food, Fresh water 30 - 37 Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria BACTERIAL Listeria seeligeri Listeria seeligeri Gi00801 Genome incomplete Public AGOWA, Qiagen, Univ of Giessen, Univ of Wuerzburg BMBF Chakraborty T Trinad.Chakraborty@mikrobio.med.uni-giessen.de Medical 1640 13442 001174_GCAT 133797 0 Complete 2797 0 36 Germany Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles, Chains None Motile Non-Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria BACTERIAL Listeria monocytogenes serotype 4a serotype 4a 4a Gi00802 Genome incomplete Public AGOWA, Univ of Giessen, Univ of Wuerzburg BMBF Chakraborty T Trinad.Chakraborty@mikrobio.med.uni-giessen.de Animal Pathogen, Cattle Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 1639 001175_GCAT 100113 0 3000 0 0 Germany Intestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles, Chains Food poisoning, Listeriosis Soil, Fresh water, Food, Intestinal microflora Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes 10403S 10403S Listeria monocytogenes 10403S Gi01186 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu LMRG Animal Pathogen, Cattle Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 393133 17495 001176_GCAT 640963064 NZ_AARZ00000000 Draft 2866 2850 37 USA Mice Mice Mice Intestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles, Chains Food poisoning, Listeriosis Soil, Host, Fresh water, Food, Intestinal microflora Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes F6900 F6900 Listeria monocytogenes F6900 Gi01187 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu LMMG Animal Pathogen, Cattle Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 393128 17321 001177_GCAT 640963061 NZ_AARU00000000 Draft 3000 2618 0 USA Intestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles, Chains Food poisoning, Listeriosis Soil, Fresh water, Food, Intestinal microflora Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes Finland 1988 Finland 1988 Listeria monocytogenes Finland 1988 Gi01188 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Animal Pathogen, Cattle Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 393127 17319 001178_GCAT 643886191 , NZ_AART00000000 Draft 2834 0 37 USA Intestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Chains, Singles Food poisoning, Listeriosis Soil, Fresh water, Food, Intestinal microflora Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes FSL J1-194 FSL J1-194 Listeria monocytogenes FSL J1-194 Gi01190 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu LmonFS Animal Pathogen, Cattle Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 393117 17299 001180_GCAT 266271 641736258 NZ_AARJ00000000 Draft 3000 2655 37.8 USA Intestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles, Chains Food poisoning, Listeriosis Soil, Fresh water, Food, Intestinal microflora Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes FSL J1-208 FSL J1-208 Listeria monocytogenes FSL J1-208 Gi01191 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu LmonocyFSL Animal Pathogen, Cattle Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 393119 17303 001181_GCAT 268527 641736260 NZ_AARL00000000 Draft 2300 2856 37.7 USA Intestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles, Chains Food poisoning, Listeriosis Soil, Fresh water, Food, Intestinal microflora Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes FSL J2-064 FSL J2-064 Listeria monocytogenes FSL J2-064 Gi01192 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu LmonocytoFSL Poultry Pathogen, Swine Pathogen, Medical, Cattle Pathogen, Human Pathogen, Animal Pathogen 393122 17309 001182_GCAT 273412 641736263 NZ_AARO00000000 Draft 2900 2719 37.9 USA Intestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles, Chains Food poisoning, Listeriosis Soil, Fresh water, Food, Intestinal microflora Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes FSL J2-071 FSL J2-071 Listeria monocytogenes FSL J2-071 Gi01193 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu LmonFSL Animal Pathogen, Cattle Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 393121 17307 001183_GCAT 258630 641736262 NZ_AARN00000000 Draft 2900 2442 0 USA Intestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles, Chains Food poisoning, Listeriosis Soil, Fresh water, Food, Intestinal microflora Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes FSL N1-017 FSL N1-017 Listeria monocytogenes FSL N1-017 Gi01194 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu LMHG Animal Pathogen, Cattle Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 393123 17311 001184_GCAT 640963059 NZ_AARP00000000 Draft 3100 2876 37.8 USA Intestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles, Chains Food poisoning, Listeriosis Intestinal microflora, Fresh water, Food, Soil Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes J0161, FSL R2-499 J0161, FSL R2-499 1/2a Listeria monocytogenes J0161 A503E, LMB503, ILSI-35 Gi01195 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu LMOG Animal Pathogen, Cattle Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 393130 17493 001185_GCAT 640963062 NZ_AARW00000000 Draft 3051 2910 37 USA A deli in the United States in 2000 during an epidemic outbreak 2000 USA A deli in the United States in 2000 during an epidemic outbreak Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles, Chains Food poisoning, Listeriosis Intestinal microflora, Fresh water, Food, Soil Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes FSL R2-503 FSL R2-503 1/2b Listeria monocytogenes FSL R2-503 Gi01196 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu LmonoFSL Animal Pathogen, Cattle Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 393125 17315 001186_GCAT 641736252 NZ_AARR00000000 Draft 55 2991 2968 37 USA responsible for a gastrointestinal listeriosis outbreak in the US in 1994 1994 USA Homo sapiens Gastrointestinal listeriosis Gastrointestinal tract Intestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Chains, Singles Food poisoning, Listeriosis Intestinal microflora, Fresh water, Food, Soil Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes FSL J1-175 FSL J1-175 Listeria monocytogenes FSL J1-175 Gi02328 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu LmonocFSL Animal Pathogen, Cattle Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 393118 17301 001187_GCAT 270705 641736259 NZ_AARK00000000 Draft 2902 2428 37 USA Water Water Intestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles, Chains Food poisoning, Listeriosis Intestinal microflora, Fresh water, Food, Soil 30 - 37 Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes FSL R2-561 FSL R2-561 Listeria monocytogenes FSL R2-561 Gi01197 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Animal Pathogen, Cattle Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 393126 17317 001188_GCAT 643886190 NZ_AARS00000000 Draft 2945 0 37 USA Intestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Chains Food poisoning, Listeriosis Intestinal microflora, Fresh water, Food, Soil Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes FSL F2-515 FSL F2-515 Listeria monocytogenes FSL F2-515 Gi01198 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu LmonF Animal Pathogen, Cattle Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 393116 17297 001189_GCAT 268249 641736257 NZ_AARI00000000 Draft 2586 2833 0 USA Intestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles, Chains Food poisoning, Listeriosis Intestinal microflora, Fresh water, Food, Soil Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes FSL J2-003 FSL J2-003 Listeria monocytogenes FSL J2-003 Gi01199 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu LmonocytFSL Animal Pathogen, Cattle Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 393120 17305 001190_GCAT 641736261 NZ_AARM00000000 Draft 2878 2498 37 USA Intestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles, Chains Food poisoning, Listeriosis Intestinal microflora, Fresh water, Food, Soil 30 - 37 Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes FSL N3-165 FSL N3-165 Listeria monocytogenes FSL N3-165 Gi01200 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu LMIG Animal Pathogen, Cattle Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 393124 17313 001191_GCAT 640963060 NZ_AARQ00000000 Draft 2886 2866 37.8 USA Intestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles, Chains Food poisoning, Listeriosis Intestinal microflora, Fresh water, Food, Soil 30 - 37 Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes Italy 1997 Italy 1997 Listeria monocytogenes Italy Gi01201 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Animal Pathogen, Cattle Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 393129 17323 001192_GCAT 0 0 0 0 USA Intestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Chains Food poisoning, Listeriosis Intestinal microflora, Fresh water, Food, Soil Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria BACTERIAL Listeria monocytogenes Aureli1997 Aureli1997 Gi01653 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Human Pathogen, Medical, Cattle Pathogen, Swine Pathogen, Animal Pathogen, Poultry Pathogen 1639 001193_GCAT 100113 0 0 0 0 USA Intestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles, Chains Food poisoning, Listeriosis Intestinal microflora, Fresh water, Food, Soil Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes J2818 J2818 Listeria monocytogenes J2818 Gi01202 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu LMPG Animal Pathogen, Cattle Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 393131 17327 001194_GCAT 640963063 NZ_AARX00000000 Draft 2971 2843 37.8 USA Intestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles, Chains Food poisoning, Listeriosis Intestinal microflora, Fresh water, Food, Soil 30 - 37 Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes LO28 LO28 Listeria monocytogenes LO28 Gi01203 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu LmonL Animal Pathogen, Cattle Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 393132 17329 001195_GCAT 276377 641736253 NZ_AARY00000000 Draft 2910 2499 37 USA Intestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles, Chains Food poisoning, Listeriosis Intestinal microflora, Fresh water, Food, Soil 30 - 37 Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes HPB2262 HPB2262 4b Listeria monocytogenes HPB2262 Gi01699 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu LMSG Animal Pathogen, Cattle Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 401650 17597 001196_GCAT 640963047 NZ_AATL00000000 Draft 3006 2887 37.8 USA Case of febrile gastrointestinal illness among students and staff who had eaten at one of two school cafeterias in Northern Italy in 1997 1997 Italy Case of febrile gastrointestinal illness among students and staff who had eaten at one of two school cafeterias in Northern Italy in 1997 Homo sapiens Patient with gastrointestinal illness Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles, Chains Food poisoning, Listeriosis Intestinal microflora, Fresh water, Food, Soil 30 - 37 Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria BACTERIAL Listeria grayi murrayi CLIP12515 CLIP12515 Listeria grayi Gi00821 Genome incomplete Public Institut Pasteur, Univ of Wurzburg BMBF Kunst F fkunst@pasteur.fr Biotechnological 1641 13440 001198_GCAT 15041 0 2600 0 42 France Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles, Chains None 37 Motile Non-Pathogen, Nitrate reducer Chemoorganotroph Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Loktanella Loktanella vestfoldensis BACTERIAL Loktanella vestfoldensis SKA53 SKA53 Loktanella vestfoldensis SKA53 Gi00850 Genome incomplete Public Univ of Kalmar, J. Craig Venter Institute Moore Foundation Hagstrom A http://halia.hik.se/start.jsp?page=members/ake%20hagstrom SKA Marine Microbial Initiative (MMI), Environmental 314232 13444 001199_GCAT 638341119 NZ_AAMS00000000 Draft 3065 3155 60 Sanger USA Seawater taken at a depth of 2-5m from the North Atlantic Ocean Sweden North Atlantic 58.94083 11.07944 2-5 meters Aerobe Rod-shaped Mesophile gram- Free living None Marine Nonmotile Chemoheterotroph Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Rhodospirillaceae Magnetospirillum Magnetospirillum magnetotacticum BACTERIAL Magnetospirillum magnetotacticum MS-1 MS-1 Magnetospirillum magnetotacticum MS-1 ATCC 31632 Yes Gi00344 Genome complete Public DOE Joint Genome Institute, CalTech DOE Bruce D microbes@cuba.jgi-psf.org Magn Biotechnological 272627 6 001200_GCAT 203450 638341121 NZ_AAAP00000000 Draft 9211 10240 66.4 Sanger USA Microaerobic zones from freshwater sediments Microaerobic zones from freshwater sediments Aerobe Spiral-shaped Mesophile gram- Free living None Marine, Fresh water, Sediment Motile Magnetite production, Iron reducer Heterotroph Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Rhodospirillaceae Magnetospirillum Magnetospirillum gryphiswaldense BACTERIAL Magnetospirillum gryphiswaldense MSR-1 MSR-1 Magnetospirillum gryphiswaldense MSR-1 Gi01955 Genome incomplete Public Max Planck Institute Sch|ler D dirk.schueler@lrz.uni-muenchen.de Biotechnological 431944 19063 002581_GCAT 0 In progress 1.5 Kb, 3.5 Kb Phred/Phrap/Consed 9.4x MORFind2 4264 4268 1 1 62.8 Sanger Germany Aerobe Spiral-shaped Mesophile gram- Free living None Fresh water Motile Magnetite production, Iron reducer Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Mannheimia BACTERIAL Mannheimia haemolytica 2.4 2.4 Gi00346 Genome incomplete Proprietary LION Bioscience AG, Intervet GmbH BMBF/ HRVet Agricultural, Animal Pathogen, Poultry, Medical, Pathogen, Cattle Pathogen 75985 001201_GCAT 9596 0 Complete 2400 0 41 Germany Facultative Coccus-shaped Mesophile gram- Free living Respiratory disease, Ovine mastitis, Pasteurellosis Host 37 Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Mannheimia Mannheimia haemolytica BACTERIAL Mannheimia haemolytica PHL213 (ST1) PHL213 (ST1) Mannheimia haemolytica PHL213 Gi00347 Genome incomplete Public BCM-HGSC USDA, NRICGP Highlander, SK sarahh@bcm.tmc.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Agricultural, Animal Pathogen, Poultry, Medical, Pathogen, Cattle Pathogen 272629 221 001202_GCAT 0 NZ_AASA00000000 Complete 8.4x 2569 0 41.1 USA Facultative Coccus-shaped Mesophile gram- Free living Respiratory disease, Ovine mastitis, Pasteurellosis Host 37 Pathogen Bacteria Thermotogae Thermotogae (class) Thermotogales Thermotogaceae Marinitoga BACTERIAL Marinitoga camini MV1075 MV1075 Marinitoga camini Gi01018 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Evolutionary, Biotechnological 106262 15680 001203_GCAT 1220 0 0 0 29 USA Mid-Atlantic Ridge hydrothermal vent chimney Mid-Atlantic Ridge hydrothermal vent chimney Anaerobe Rod-shaped Nonsporulating Thermophile Halotolerant gram- Free living None Hydrothermal vent, Fresh water 55 Motile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Marinobacter BACTERIAL Marinobacter hydrocarbonoclasticus ATCC49840 ATCC49840 ATCC49840 Yes Gi01519 Genome incomplete Public Genoscope Barbe V vbarbe@genoscope.cns.fr Bioremediation, Environmental, Detoxification, Biotechnological 2743 001204_GCAT 223860 0 0 0 0 France Facultative Rod-shaped Nonsporulating Mesophile Halophile gram- Free living None Fresh water Motile Oil degrading, Iron oxidizer, Hydrocarbon degrading Heterotroph Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Marinobacter Marinobacter sp. F02 BACTERIAL Marinobacter sp FO2 FO2 Marinobacter sp. F02 Gi00851 Genome incomplete Public J. Craig Venter Institute, Woods Hole Oceanographic Institute Moore Foundation Edwards KJ http://www.whoi.edu/science/MCG/edwards/ Marine Microbial Initiative (MMI), Environmental 314342 13586 001205_GCAT 0 2600 0 0 USA Juan de Fuca Ridge Middle Valley Vent at a depth of 2400 meters Juan de Fuca Ridge Middle Valley Vent at a depth of 2400 meters 48.4567 -128.7083 2400 meters Facultative Rod-shaped Nonsporulating gram- Free living None Marine Motile Iron oxidizer Chemolithoautotroph, Autotroph Bacteria Proteobacteria Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas sp. MED121 BACTERIAL Marinomonas sp. MED121 MED121 Marinomonas sp. MED121 Gi00852 Genome incomplete Public Kalmar Univ, J. Craig Venter Institute Moore Foundation Pinhassi J http://halia.hik.se/start.jsp?page=members/jarone%20pinhassi MED Marine Microbial Initiative (MMI), Environmental 314277 13587 001206_GCAT 155836 638341124 NZ_AANE00000000 Draft 5121 4987 41 Sanger USA Northwest Mediterranean Sea at a depth of 1m Northwest Mediterranean Sea at a depth of 1m 41.66667 2.80000 1 meter Aerobe Rod-shaped Mesophile gram- Free living None Marine Motile Bacteria Proteobacteria Betaproteobacteria Methylophilales Methylophilaceae Methylobacillus Methylobacillus flagellatus BACTERIAL Methylobacillus flagellatus KT KT ATCC 51484, DSM 6875 Yes Gi00367 Genome incomplete Proprietary Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Bioremediation, Biotechnological, Wastewater treatment, Environmental, Energy production 265072 001207_GCAT 143113 0 2884 2608 55.8 USA Activated sludge found at the wastewater treatment plant in Moscow Russia Russia Activated sludge found at the wastewater treatment plant in Moscow Russia 55.755786 37.617633 Aerobe Rod-shaped Mesophile gram- Free living None Sludge Motile Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Methylobacteriaceae Methylobacterium Methylobacterium extorquens BACTERIAL Methylobacterium extorquens AM1 AM1 Methylobacterium extorquens AM1 DSM 1338, CCUG 2477, ATCC 14718 No Gc01036 Gi00369 Genome Complete and Published Public Univ of Washington Lidstrom M http://faculty.washington.edu/lidstrom/Mary_Lidstrom/mary_lidstrom.html MexAM1_META1p 2009-06-17 PLoS ONE 4, E5584 Methanol production, Biotechnological 272630 20 001208_GCAT 151046 0 NC_012808 Complete Level 6: Finished 3Kb, 10Kb, 25Kb 132942 pUC19, pFOS1 Phred/Phrap/Consed AMIGene 5511 5075 1 4 68 Sanger USA Air Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None 25 - 30 Motile Methylotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Methylobacteriaceae Methylobacterium BACTERIAL Methylobacterium dichloromethanicum DM4 DM4 Methylobacterium dichloromethanicum Gc01065 Gi01019 Genome Complete and Published Public Genoscope Vuilleumier S vuilleumier@unistra.fr METDI 2009-07-17 PLoS ONE 4 (5), E5584 Methanol production, Biotechnological 119024 16093 001209_GCAT 70463 0 NC_012988 Complete Level 6: Finished 3Kb, 10Kb, 25Kb 132942 pUC19, pNAV, pCNS, pBeloBAC11 Phred/Phrap/Consed AMIGene 5943 5857 1 2 68 France Soil contaminated with halogenated (chlorine-containing) hydrocarbons Soil contaminated with halogenated (chlorine-containing) hydrocarbons Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Motile Methylotroph Bacteria Proteobacteria Gammaproteobacteria Methylococcales Methylococcaceae Methylomonas Methylomonas sp. 16a BACTERIAL Methylomonas sp 16a 16a Gi00371 Genome incomplete Proprietary DuPont Biotechnological 318114 001210_GCAT 0 Complete 4000 4000 0 USA Aerobe Mesophile gram- Free living None Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Piscirickettsiaceae Methylophaga BACTERIAL Methylophaga thalassica S1 S1 Methylophaga thalassica Gi00372 Genome incomplete Proprietary Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Biotechnological 40223 13471 001211_GCAT 7719 0 0 0 0 USA Aerobe Rod-shaped Mesophile gram- Free living None Methylotroph Bacteria Cyanobacteria Chroococcales Microcystis Microcystis aeruginosa BACTERIAL Microcystis aeruginosa PCC 7806 PCC 7806 Microcystis aeruginosa PCC 7806 PCC 7806 Gi00374 Genome incomplete Public Institut Pasteur de Marsac NT NTMarsac@Pasteur.Fr Animal Pathogen, Medical, Human Pathogen, Fish Pathogen 267872 15702 001212_GCAT 201291 0 4800 0 0 France Gastrointestinal tract Aerobe Mesophile gram- Free living Skin irritation, Cyanobacterial hepatotoxicosis, Gastrointestinal disease Soil, Host, Gastrointestinal tract, Fresh water Pathogen, Hepatotoxins synthesis Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Flexibacteraceae Microscilla Microscilla marina BACTERIAL Microscilla marina ATCC 23134 ATCC 23134 Microscilla marina ATCC 23134 ATCC 23134 Yes Gi00853 Genome incomplete Public Kalmar Univ, J. Craig Venter Institute Moore Foundation Haygood M http://mbrd.ucsd.edu/researchers/people_detail.cfm?state=%26%29%2E%3B%2ET%5C%3FX%0A M23134 Marine Microbial Initiative (MMI), Environmental 313606 13411 001213_GCAT 198492 640196209 NZ_AAWS00000000 Draft 9771 8445 41 Sanger USA Marine aquarium outflow Marine aquarium outflow Aerobe Filament-shaped Mesophile gram- Free living None Marine Motile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Moraxella BACTERIAL Moraxella bovis Epp63 Epp63 Moraxella bovis Epp63 Gi00948 Genome incomplete Public BCM-HGSC USDA Highlander, SK sarahh@bcm.tmc.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Animal Pathogen, Medical, Dairy industry, Cattle Pathogen 476 16829 001214_GCAT 8259 0 25x 2000 0 0 454, Sanger USA Coccus-shaped Mesophile gram- Free living Keratoconjunctivitis Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Moraxella BACTERIAL Moraxella catarrhalis Moraxella catarrhalis Gi00377 Genome incomplete Public NRC-IMB NRC Medical, Fish Pathogen 480 13412 001215_GCAT 8278 0 1900 0 0 Canada Aerobe Coccus-shaped Mesophile gram- Free living Furunculosis Host 37 Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Moraxella BACTERIAL Moraxella catarrhalis Gi00378 Genome incomplete Proprietary Genome Therapeutics Medical, Fish Pathogen 480 001216_GCAT 8278 0 Complete 0 0 0 USA Aerobe Coccus-shaped Mesophile gram- Free living Furunculosis Fresh water Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Moritellaceae Moritella Moritella sp. PE36 BACTERIAL Moritella sp PE36 PE36 Moritella sp. PE36 Gi00854 Genome incomplete Public Scripps Institute of Oceanography, J. Craig Venter Institute Moore Foundation, NSF Yayanos AA http://mbrd.ucsd.edu/labpages/yayanos_lab.cfm PE Marine Microbial Initiative (MMI), Environmental 58051 13535 001217_GCAT 240657 640963028 NZ_ABCQ00000000 Draft 5164 4970 42 USA Pacific Ocean at 288Km from the coast of San Diego USA Pacific Ocean at 288Km from the coast of San Diego 33.00000 -122.00000 3600 meters Mesophile gram- Free living None Deep sea, Marine Piezophile Heterotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium abscessus CIP 104536 CIP 104536 Mycobacterium abscessus ATCC 19977, CIP 104536 Yes Gc00729 Gi00949 Genome Complete and Published Public Genoscope Barbe V vbarbe@genoscope.cns.fr MAB 2008-03-01 PLoS One 4(6):e5660 Medical, Human Pathogen 36809 15691 001218_GCAT 29667 641522641 NC_010397 Complete 3-4Kb, 8-10Kb, 20Kb 11x SHOW 5067 5041 1 0 64 Sanger France human knee infection with subcutaneous abscess-like lesions before 1953 Homo sapiens Patient with knee infection Skin Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Wound infection, Broncho-pulmonary infection, Respiratory infection Host 37 Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium bovis BACTERIAL Mycobacterium bovis BCG Moreau RDJ Moreau RDJ Mycobacterium bovis BCG str. Moreau RDJ Gc01007 Gi01688 Genome Complete and Published Public FAP 2009-05-23 Unpublished Animal Pathogen, Medical, Human Pathogen, Cattle Pathogen 413996 18279 001219_GCAT 0 AM412059 Complete Level 6: Finished 4320 0 1 0 0 Brazil Brazilian vaccine strain SL21 FAP RJ Passage B8S2 vaccine culture Brazil Homo sapiens Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium chelonae CIP 104535 CIP 104535 Mycobacterium chelonae ATCC 35752 Yes Gi00950 Genome incomplete Public Genoscope Barbe V vbarbe@genoscope.cns.fr Human Pathogen, Medical 1774 15692 001220_GCAT 197073 0 12x 0 0 0 Sanger France Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Respiratory infection, Broncho-pulmonary infection Host 37 Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium marinum BACTERIAL Mycobacterium marinum M, ATCC BAA-535 M, ATCC BAA-535 Mycobacterium marinum M ATCC BAA-535 Gc00784 Gi00382 Genome Complete and Published Public Sanger Institute, Institut Pasteur, Univ of Washington Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ MMAR 2008-04-15 Genome Res. 18, 729-41 Animal Pathogen, Medical, Human Pathogen 216594 16725 001223_GCAT 269840 641522642 NC_010612 Complete 1.4-2Kb, 3-3.3Kb, 5.5-6Kb 9.3x 6636 5550 1 1 65 Sanger Australia "Human patient isolate from Moffett Hospital, University of California, San Francisco in 1992" 1992 USA Human patient isolate from Moffett Hospital, University of California, San Francisco in 1992 37.763385 -122.458081 Homo sapiens Patient Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host 32 Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium africanum GM041182 GM041182 Gi01689 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Animal Pathogen, Medical, Human Pathogen, Cattle Pathogen 33894 001224_GCAT 32152 0 3283 0 0 United Kingdom Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis, Pulmonary tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium canetti CIPT140010059 CIPT140010059 Gi01992 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Animal Pathogen, Medical, Human Pathogen, Cattle Pathogen 78331 002621_GCAT 0 0 0 0 United Kingdom Tuberculosis patients in East Africa Tuberculosis patients in East Africa Homo sapiens Patient Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis, Pulmonary tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium microti OV254 OV254 Mycobacterium microti Gi00383 Genome incomplete Public Sanger Institute, Institut Pasteur DEFRA Animal Pathogen, Medical, Human Pathogen, Cattle Pathogen 1806 12623 001225_GCAT 52725 0 4300 0 0 European Consortium Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis 210 210 Mycobacterium tuberculosis 210 Gi00385 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Medical, Human Pathogen 164513 273 001226_GCAT 210 0 Complete 4447 0 0 USA Tuberculosis outbreak in Texas USA Tuberculosis outbreak in Texas Homo sapiens Patient Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis A1 A1 Gi01204 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 1773 001228_GCAT 13173 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis C C Mycobacterium tuberculosis C Gi01205 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu MtubC Medical, Human Pathogen 348776 16172 001229_GCAT 638341130 NZ_AAKR00000000 Draft 6.7x 4276 4087 65 Sanger USA Drug-susceptible strain that has caused a large proportion of new tuberculosis cases in New York USA Drug-susceptible strain that has caused a large proportion of new tuberculosis cases in New York 40.756054 -73.986951 Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis Ekat-4 Ekat-4 Gi01227 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 1773 001230_GCAT 13173 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis Haarlem Haarlem Mycobacterium tuberculosis str. Haarlem Gi01206 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu MtubH Medical, Human Pathogen 395095 17353 001231_GCAT 641736194 NZ_AASN00000000 Draft 14.57x 4347 4421 65.3 Sanger USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host 37 Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis Peruvian1 Peruvian1 Gi01207 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 1773 001232_GCAT 13173 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis Peruvian2 Peruvian2 Gi01208 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Human Pathogen, Medical 1773 001233_GCAT 13173 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis W-148 W-148 Gi01209 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 1773 39283 001234_GCAT 13173 0 10.8x 0 0 0 USA Bonnie Plikaytis - CDC Tommie Victor Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis K37 K37 Gi02496 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 1773 003222_GCAT 13173 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis 4783_04 4783_04 Gi02497 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 1773 003223_GCAT 13173 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis GM 1503 GM 1503 Mycobacterium tuberculosis GM 1503 Gi02498 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 537209 30015 003224_GCAT 642979350 NZ_ABQG00000000 Draft 5x 4261 0 65 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis SG1 SG1 Gi02499 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 1773 003225_GCAT 13173 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis 91_0079 91_0079 Gi02500 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 1773 003226_GCAT 13173 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis K49 K49 Gi02501 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 1773 003227_GCAT 13173 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis K100 K100 Gi02502 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 1773 003228_GCAT 13173 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis 94_M4241A 94_M4241A Mycobacterium tuberculosis 94_M4241A Gi02503 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 515615 29165 003229_GCAT 642979310 NZ_ABLL00000000 Draft 9x 4410 0 65 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis M4100A M4100A Gi02504 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 1773 003230_GCAT 13173 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis 98_1833 98_1833 Gi02505 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 1773 003231_GCAT 13173 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis 93_1117 93_1117 Gi02506 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 1773 003232_GCAT 13173 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis 02_1987 02_1987 Mycobacterium tuberculosis 02_1987 Gi02507 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 515616 29167 003233_GCAT 642979309 NZ_ABLM00000000 Draft 9x 4443 0 65 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis 00_1695 00_1695 Gi02508 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 1773 003234_GCAT 13173 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis T67 T67 Gi02509 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 1773 003235_GCAT 13173 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium kansasii BACTERIAL Mycobacterium kansasii ATCC 12478 ATCC 12478 Mycobacterium kansasii ATCC 12478 ATCC 12478 Yes Gi02510 Genome incomplete Public McGill Univ Medical, Human Pathogen 557599 30907 003236_GCAT 37486 0 NZ_ACBV00000000 Draft 33x 299 6400 0 66 Canada clinical isolate isolated from a fatal case clinical isolate Homo sapiens Patient Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis T17 T17 Mycobacterium tuberculosis T17 Gi02511 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 537210 30017 003237_GCAT 642979349 NZ_ABQH00000000 Draft 4277 4254 65 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis T46 T46 Gi02512 Genome incomplete Public Broad Institute NIH-NIAID Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 611302 34551 003238_GCAT 13173 0 NZ_ACHO00000000 Draft 5.9x 167 4347 0 65 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis T92 T92 Mycobacterium tuberculosis T92 Gi02513 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 515617 29169 003239_GCAT 642979311 NZ_ABLN00000000 Draft 4.5x 4260 0 65 USA Clinical isolate Clinical isolate Homo sapiens Patient Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis 95_0545 95_0545 Gi02514 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 1773 003240_GCAT 13173 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis T83 T83 Gi02515 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 1773 003241_GCAT 13173 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis K21 K21 Gi02516 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 1773 003242_GCAT 13173 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis K67 K67 Gi02517 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 1773 003243_GCAT 13173 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis K93 K93 Gi02518 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 1773 003244_GCAT 13173 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis EAS054 EAS054 Mycobacterium tuberculosis EAS054 Gi02519 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 520140 29329 003245_GCAT 642979363 NZ_ABOV00000000 Draft 9x 4366 0 65 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis 11821_03 11821_03 Gi02520 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 1773 003246_GCAT 13173 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis 5444_04 5444_04 Gi02521 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 1773 003247_GCAT 13173 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis CPHL_A CPHL_A Gi02888 Genome incomplete Public Broad Institute NIH-NIAID Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 611303 34553 003616_GCAT 13173 0 NZ_ACHP00000000 Draft 9.15x 77 4376 0 65 Sanger USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis K85 K85 Gi02522 Genome incomplete Public Broad Institute NIH-NIAID Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 611304 34555 003248_GCAT 13173 0 NZ_ACHQ00000000 Draft 10.4x 154 4399 0 65 Sanger USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis 4141_04 4141_04 Gi02523 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 1773 003249_GCAT 13173 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis GM_0981 GM_0981 Gi02524 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 1773 003250_GCAT 13173 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium canettii K116 K116 Gi02525 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 78331 003251_GCAT 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis KZN 605 (XDR) KZN 605 (XDR) Mycobacterium tuberculosis KZN 605 Gi01904 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 478435 21057 002537_GCAT 0 NZ_ABGN00000000 Draft 4237 0 65 USA "Patient in KwaZulu-Natal, South Africa" South Africa Patient in KwaZulu-Natal, South Africa -28.409279 30.909119 Homo sapiens Patient Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host 37 Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis KZN 1435 (MDR) KZN 1435 (MDR) Mycobacterium tuberculosis KZN 1435 Gc01079 Gi01905 Genome Complete and Published Public Broad Institute NIH-NIAID Birren B bwb@BROAD.MIT.EDU TBMG 2009-07-09 Unpublished Medical, Human Pathogen 478434 21055 002538_GCAT 0 NC_012943 Complete Level 6: Finished 4398 4107 1 0 65 USA "Patient in KwaZulu-Natal, South Africa" South Africa Patient in KwaZulu-Natal, South Africa -28.530554 30.895824 Homo sapiens Patient Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host 37 Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis KZN 4207 (DS) KZN 4207 (DS) Mycobacterium tuberculosis KZN 4207 Gi01906 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Medical, Human Pathogen 478433 21053 002539_GCAT 0 NZ_ABGL00000000 Draft 4331 0 65 USA "Patient in KwaZulu-Natal, South Africa" South Africa Patient in KwaZulu-Natal, South Africa -28.409279 30.909119 Homo sapiens Patient Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host 37 Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium ulcerans Gi00951 Genome incomplete Public Clemson Univ Clemson Univ CUGI jtmkns@clemson.edu Medical, Human Pathogen 1809 001236_GCAT 13102 0 4400 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Buruli ulcer Host Nonmotile Pathogen Chemoorganotroph Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma agalactiae BACTERIAL Mycoplasma agalactiae 5632 5632 Mycoplasma agalactiae 5632 Gi01078 Genome incomplete Public Genoscope Barbe V vbarbe@genoscope.cns.fr Medical, Animal Pathogen 347258 16096 001238_GCAT 25799 0 950 0 0 France Facultative Sphere-shaped Mesophile gram- Free living Singles Pneumonia, Arthritis, Mastitis, Mycoplasmosis Host Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma BACTERIAL Mycoplasma alligatoris Mycoplasma alligatoris Gi00387 Genome incomplete Public Univ of Florida NIH Brown RD brownd@mail.vetmed.ufl.edu Medical, Animal Pathogen 47687 13414 001239_GCAT 49382 0 0 0 0 USA Facultative Sphere-shaped Mesophile gram- Free living Singles Mycoplasmosis Host Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma BACTERIAL Mycoplasma amphoriforme A39 A39 NCTC 11740, ATCC BAA-992 Yes Gi01369 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical, Human Pathogen 273136 001240_GCAT 111523 0 1000 0 0 United Kingdom Sputum of an immunodeficient patient with recurrent bronchitis Sputum of an immunodeficient patient with recurrent bronchitis Homo sapiens Patient with recurrent bronchitis Airways Facultative Sphere-shaped Mesophile gram- Free living Singles Respiratory infection Host Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma arthritidis BACTERIAL Mycoplasma arthritidis 158L3-1 158L3-1 Mycoplasma arthritidis 158L3-1 Gc00825 Gi00388 Genome Complete and Published Public J. Craig Venter Institute NIH Dybvig K dybvig@uab.edu MARTH 2008-06-25 Infect. Immunity 76,4000-8 Animal Pathogen, Medical, Human Pathogen 243272 1422 001241_GCAT 317108 642555141 NC_011025 Complete 820 666 1 0 30 USA Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Arthritis Host 37 Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma bovis BACTERIAL Mycoplasma bovis Donetta PG45 Donetta PG45 Mycoplasma bovis PG45 Gi00575 Genome incomplete Public Univ of Missouri, J. Craig Venter Institute USDA Animal Pathogen, Medical, Cattle Pathogen 289397 12525 001242_GCAT 0 Complete 0 0 0 USA Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Respiratory disease, Arthritis, Mastitis Host 37 Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma BACTERIAL Mycoplasma capricolum Gi00389 Genome incomplete Public Max Planck Institute Animal Pathogen, Medical, Goat Pathogen 2095 001243_GCAT 15778 0 1200 0 0 Germany Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Septicemia, Arthritis, Caprine mycoplasma Host 37 Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma capricolum BACTERIAL Mycoplasma capricolum capricolum Gi00577 Genome incomplete Public Institute for Systems Biology USDA Animal Pathogen, Medical, Goat Pathogen 40479 001244_GCAT 15765 0 1200 0 0 USA Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Septicemia, Arthritis, Caprine mycoplasma Host 37 Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma BACTERIAL Mycoplasma capricolum 959 959 Mycoplasma capricolum Gi02337 Genome incomplete Public George Mason Univ Animal Pathogen, Medical, Goat Pathogen 2095 96 003059_GCAT 139255 0 0 0 0 USA Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Septicemia, Arthritis, Caprine mycoplasma Host 37 Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma BACTERIAL Mycoplasma gallisepticum #1 #1 Gi02347 Genome incomplete Public Univ of Connecticut NSF Geary S steven.geary@uconn.edu Medical, Animal Pathogen 2096 003073_GCAT 202128 0 0 0 0 USA "12-Year Epizootic in House Finche populations starting in Washington, D. C. in 1994" 1994 USA 12-Year Epizootic in House Finche populations starting in Washington, D. C. in 1994 Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Respiratory infection Host 37 Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma BACTERIAL Mycoplasma gallisepticum #2 #2 Gi02348 Genome incomplete Public Univ of Connecticut NSF Geary S steven.geary@uconn.edu Medical, Animal Pathogen 2096 003074_GCAT 202128 0 0 0 0 USA "12-Year Epizootic in House Finche populations starting in Washington, D. C. in 1994" 1994 USA 12-Year Epizootic in House Finche populations starting in Washington, D. C. in 1994 Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Respiratory infection Host 37 Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma BACTERIAL Mycoplasma gallisepticum #3 #3 Gi02349 Genome incomplete Public Univ of Connecticut NSF Geary S steven.geary@uconn.edu Medical, Animal Pathogen 2096 003075_GCAT 202128 0 0 0 0 USA "12-Year Epizootic in House Finche populations starting in Washington, D. C. in 1994" 1994 USA 12-Year Epizootic in House Finche populations starting in Washington, D. C. in 1994 Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Respiratory infection Host 37 Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma BACTERIAL Mycoplasma gallisepticum #4 #4 Gi02350 Genome incomplete Public Univ of Connecticut NSF Geary S steven.geary@uconn.edu Medical, Animal Pathogen 2096 003076_GCAT 202128 0 0 0 0 USA "12-Year Epizootic in House Finche populations starting in Washington, D. C. in 1994" 1994 USA 12-Year Epizootic in House Finche populations starting in Washington, D. C. in 1994 Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Respiratory infection Host 37 Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma BACTERIAL Mycoplasma gallisepticum #5 #5 Gi02351 Genome incomplete Public Univ of Connecticut NSF Geary S steven.geary@uconn.edu Medical, Animal Pathogen 2096 003077_GCAT 202128 0 0 0 0 USA "12-Year Epizootic in House Finche populations starting in Washington, D. C. in 1994" 1994 USA 12-Year Epizootic in House Finche populations starting in Washington, D. C. in 1994 Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Respiratory infection Host 37 Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma BACTERIAL Mycoplasma fermentans Mycoplasma fermentans Gi00390 Genome incomplete Public Yang-Ming Univ, Taiwan Shiao M-S msshiao@vghtpe.gov.tw Human Pathogen, Medical 2115 13415 001245_GCAT 15950 0 1100 0 0 Taiwan Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Arthritis, Respiratory disease Host Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma genitalium BACTERIAL Mycoplasma genitalium G-37 G-37 Mycoplasma genitalium G37 ATCC 33530 Yes Gi01392 Genome incomplete Public 454 Life Sciences MgenG Animal Pathogen, Medical, Human Pathogen 243273 13924 001248_GCAT 149052 638341133 NZ_AAGX00000000 Draft 560 897 1 0 31.7 454 USA Urethral specimen from a male patient with nongonococcal urethritis Urethral specimen from a male patient with nongonococcal urethritis Homo sapiens Male Patient with nongonococcal urethritis Urogenital tract Urethra Facultative Sphere-shaped Nonsporulating Mesophile gram+ Free living Singles Urogenital infection, Non-gonococcal urethritis, Respiratory infection Host, Urogenital tract Motile Parasite, Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma BACTERIAL Mycoplasma haemofelis Mycoplasma haemofelis Gi00391 Genome incomplete Public Univ of Illinois Messick JB jmessick@cvm.uiuc.edu Medical, Animal Pathogen 29501 13416 001249_GCAT 74226 0 0 0 0 USA Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Feline infectious anemia, Haemobartonellosis Host Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma BACTERIAL Mycoplasma hominis PG21 PG21 Gi01079 Genome incomplete Public Genoscope Barbe V vbarbe@genoscope.cns.fr Medical, Human Pathogen 2098 001250_GCAT 23718 0 700 0 29 France Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Genital infection Host Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma mycoides BACTERIAL Mycoplasma mycoides mycoides LC Gi01080 Genome incomplete Public Genoscope Barbe V vbarbe@genoscope.cns.fr Medical, Animal Pathogen 44100 001251_GCAT 248200 0 1200 0 0 France Anaerobe Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Pneumonia, Arthritis, Mammitis Host 37 Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma mycoides BACTERIAL Mycoplasma mycoides capri GM12 GM12 clone: deltatypeIIIres Mycoplasma mycoides subsp. capri str. GM12 Gc01084 Gi01956 Genome Complete and Published Public J. Craig Venter Institute Mmycm 2009-08-27 Science in press Medical, Animal Pathogen 436113 19245 002582_GCAT 270149 641736206 CP001668 Complete Level 6: Finished 1100 1195 1 0 23.8 USA GM12 strain was originally isolated by Al DaMassa Anaerobe Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Pneumonia, Arthritis, Mammitis Host 37 Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma BACTERIAL Mycoplasma orale Mycoplasma orale Gi00578 Genome incomplete Public Yang-Ming Univ, Taiwan Shiao M-S msshiao@vghtpe.gov.tw Medical, Human Pathogen 2121 13417 001252_GCAT 15890 0 675 0 0 Taiwan Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Respiratory infection Oral microflora, Host Pathogen Bacteria Proteobacteria Deltaproteobacteria Myxococcales Myxococcaceae Myxococcus BACTERIAL Myxococcus xanthus. Gi00396 Genome incomplete Public Stanford Univ, Cereon Genomics Biotechnological 34 001253_GCAT 66414 0 9450 7500 0 USA Obligate aerobe Rod-shaped Sporulating Mesophile gram- Free living None Soil Motile Chemoorganotroph Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Natrialba ARCHAEAL Natrialba asiatica Natrialba asiatica Gi00719 Genome incomplete Public Institute for Systems Biology, UMBI NSF Goo Y ygoo@systemsbiology.org Biotechnological 64602 13382 001254_GCAT 72038 0 0 0 0 USA Beach in Japan Japan Beach in Japan Aerobe Rod-shaped Nonsporulating Mesophile Halophile gram- Free living None Fresh water Motile Bacteria Proteobacteria Epsilonproteobacteria Nautiliales Nautiliaceae Nautilia Nautilia profundicola BACTERIAL Nautilia profundicola Am-H Am-H Nautilia profundicola AmH DSM 18972, ATCC BAA-1463 Yes Gc00958 Gi00397 Genome Complete and Published Public Univ of Delaware, J. Craig Venter Institute NSF Campbell BJ bjc@udel.edu GAMH 2009-02-13 PLoS Genetics 5, e1000362 Biotechnological, Environmental, Carbon cycle 598659 32573 001255_GCAT 51291 643692029 NC_012115 Complete 2-3 kb, 8-10 kb, 10-12 kb pHOS2 Celera v.3 8x 1676 1745 1 0 33.5 Sanger USA Epidermis of Alvinella pompejana from East Pacific Rise 1999-05-30 18599701 Epidermis of Alvinella pompejana from East Pacific Rise 12.801944 -103.934444 2500 meters Alvinella pompejana Obligate anaerobe Rod-shaped Thermophile 6.0 - 9.0 gram- Free living None Fresh water, Hydrothermal vent 40 - 45 Motile Hydrogen oxidizer, Sulfur reducer Chemoautotroph Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria BACTERIAL Neisseria lactamica ST-640 ST-640 Neisseria lactamica Gi00399 Genome incomplete Public Sanger Institute, Univ of Oxford Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ 486 13472 001256_GCAT 6467 0 2300 0 0 United Kingdom nasopharyngeal culture nasopharyngeal culture Homo sapiens Airways Nasopharynx Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs None Host, Human nasopharyngeal microflora Nonmotile Non-Pathogen Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis BACTERIAL Neisseria meningitidis ST-53 a-14 ST-53 a-14 cnl Neisseria meningitidis alpha14 Gc01068 Gi01081 Genome Complete and Published Public MWG-Biotech, Univ of Wuerzburg Frosch M mfrosch@hygiene.uni-wuerzburg.de NMO 2009-07-24 PNAS 105, 3473-3478 Medical, Human Pathogen 662598 39689 001257_GCAT 72832 0 NC_013016 Complete Level 6: Finished 2145 1996 1 1 51 Germany Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Meningitis, Septicemia Host Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria BACTERIAL Neisseria meningitidis ST-136 ST-136 Gi01082 Genome incomplete Public MWG-Biotech, Univ of Wuerzburg Frosch M mfrosch@hygiene.uni-wuerzburg.de Medical, Human Pathogen 487 001258_GCAT 72832 0 0 0 0 Germany Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Meningitis, Septicemia Host Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria BACTERIAL Neisseria meningitidis ST-22 ST-22 Gi01296 Genome incomplete Public MWG-Biotech, Univ of Wuerzburg Frosch M mfrosch@hygiene.uni-wuerzburg.de Medical, Human Pathogen 487 001259_GCAT 72832 0 0 0 0 Germany Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Meningitis, Septicemia Host Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria BACTERIAL Neisseria meningitidis ST-60 ST-60 Gi01297 Genome incomplete Public MWG-Biotech, Univ of Wuerzburg Frosch M mfrosch@hygiene.uni-wuerzburg.de Medical, Human Pathogen 487 001260_GCAT 72832 0 0 0 0 Germany Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Meningitis, Septicemia Host Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis BACTERIAL Neisseria meningitidis serogroup C, 8013 serogroup C, 8013 Gi00401 Genome incomplete Public Institut Pasteur Glaser P pglaser@pasteur.fr Medical, Human Pathogen 135720 001261_GCAT 0 2100 0 0 France Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Meningitis, Septicemia Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria BACTERIAL Neisseria meningitidis Gi00400 Genome incomplete Proprietary Genome Therapeutics Medical, Human Pathogen 487 001262_GCAT 72832 0 Complete 0 0 0 USA Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Meningitis, Septicemia Nonmotile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bradyrhizobiaceae Nitrobacter BACTERIAL Nitrobacter sp Nb-311A Nb-311A Nitrobacter sp. Nb-311A Gi00855 Genome incomplete Public Woods Hole Oceanographic Institute, J. Craig Venter Institute Moore Foundation Waterbury JB http://www.whoi.edu/scitech/staff.jsp?id=4 NB Environmental, Wastewater treatment, Marine Microbial Initiative (MMI) 314253 13538 001263_GCAT 638341134 NZ_AAMY00000000 Draft 4104 4358 62 Sanger USA "Luanda, Angola, near shore, Surface water in the Eastern Atlantic Ocean" Angola Tropical Eastern Atlantic -8.8158 13.211231 Surface Facultative Rod-shaped Mesophile gram- Free living None Fresh water, Marine, Surface water, Soil Motile Nitrite-oxidizer Lithotroph Bacteria Proteobacteria Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Nitrococcus Nitrococcus mobilis BACTERIAL Nitrococcus mobilis Nb-231 Nb-231 Nitrococcus mobilis Nb-231 Gi00856 Genome incomplete Public J. Craig Venter Institute, Woods Hole Oceanographic Institute Moore Foundation Waterbury JB http://www.whoi.edu/scitech/staff.jsp?id=4 NB Marine Microbial Initiative (MMI), Environmental 314278 13475 001264_GCAT 638341135 NZ_AAOF00000000 Draft 3617 3597 60 Sanger USA Equatorial Pacific surface waters Equatorial Pacific surface waters -0.30000 -91.65000 Surface Aerobe Sphere-shaped Mesophile gram- Free living None Marine, Surface water Motile Nitrite-oxidizer Chemolithotroph Bacteria Proteobacteria Gammaproteobacteria Chromatiales Chromatiaceae Nitrosococcus Nitrosococcus oceani BACTERIAL Nitrosococcus oceani AFC-27 (= Nc9) AFC-27 (= Nc9) Nitrosococcus oceani AFC27 Gi00857 Genome incomplete Public J. Craig Venter Institute, Univ of Louisville Moore Foundation Klotz MG http://www.louisville.edu/%7emgklot01/klotz.htm Marine Microbial Initiative (MMI), Environmental 314279 13547 001265_GCAT 7503 0 NZ_ABSG00000000 Draft 49 3471 3440 50 USA 1964 in Barbados Harbor from surface waters 1964 1964 in Barbados Harbor from surface waters 43.00000 -155.00000 Surface Aerobe Mesophile gram- Free living None Marine, Surface water Motile Ammonia-oxidizer Chemolithotroph Bacteria Proteobacteria Gammaproteobacteria Chromatiales Chromatiaceae BACTERIAL Nitrosococcus sp Gi00769 Genome incomplete Public J. Craig Venter Institute, Univ of Louisville NSF Klotz MG http://mgklotz.com/ Environmental, Biotechnological 1227 001266_GCAT 0 0 0 0 USA Aerobe Mesophile gram- Free living None Fresh water Motile Ammonia-oxidizer, Nitrifying Chemolithotroph Bacteria Proteobacteria Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas sp. BACTERIAL Nitrosomonas sp Gi00770 Genome incomplete Public J. Craig Venter Institute, Univ of Louisville NSF Klotz MG http://mgklotz.com/ Environmental, Biotechnological 42353 001267_GCAT 69916 0 0 0 0 USA Aerobe Mesophile gram- Free living None Fresh water Motile Ammonia-oxidizer, Nitrifying Lithotroph Bacteria Proteobacteria Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas sp. 17 BACTERIAL Nitrosomonas sp 17 17 Nitrosomonas sp. 17 Gi00858 Genome incomplete Public J. Craig Venter Institute, Woods Hole Oceanographic Institute Moore Foundation Waterbury JB http://www.whoi.edu/scitech/staff.jsp?id=4 Biotechnological, Marine Microbial Initiative (MMI), Environmental 314272 13517 001268_GCAT 17 0 0 0 0 USA Galapagos Islands in Ecuador Equador Galapagos Islands in Ecuador Aerobe Mesophile gram- Free living None Marine Motile Ammonia-oxidizer, Nitrifying Lithotroph Bacteria Proteobacteria Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas sp. BACTERIAL Nitrosomonas sp IS-79 IS-79 Gi01026 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 42353 001270_GCAT 30994 0 0 0 0 USA freshwater lake Aerobe Mesophile gram- Free living None Fresh water Motile Nitrifying Oligotroph, Lithotroph Bacteria Nitrospirae Nitrospira (class) Nitrospirales Nitrospiraceae Nitrospira Nitrospira marina BACTERIAL Nitrospira marina Nb-295 Nb-295 Nitrospira marina Nb-295 Gi00859 Genome incomplete Public J. Craig Venter Institute, Woods Hole Oceanographic Institute Moore Foundation Waterbury JB http://www.whoi.edu/scitech/staff.jsp?id=4 Marine Microbial Initiative (MMI), Environmental 35815 13446 001271_GCAT 1451 0 0 0 0 USA Surface waters of the Gulf of Maine USA Surface waters of the Gulf of Maine Mesophile gram- Free living None Marine, Surface water Nitrite-oxidizer Bacteria Nitrospirae Nitrospira (class) Nitrospirales Nitrospiraceae Nitrospira BACTERIAL Nitrospira defluvii Gi01879 Genome incomplete Public Genoscope, Univ of Vienna Daims H http://www.microbial-ecology.net/daims.asp Environmental 330214 001272_GCAT 134627 0 0 0 0 France Mesophile gram- Free living None Fresh water, Surface water Nitrite-oxidizer Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Nitrospinaceae Nitrospina Nitrospina gracilis BACTERIAL Nitrospina gracilis Nb-211 Nb-211 Nitrospina gracilis Nb-211 Gi00860 Genome incomplete Public Woods Hole Oceanographic Institute, J. Craig Venter Institute Moore Foundation Waterbury JB http://www.whoi.edu/scitech/staff.jsp?id=4 Environmental, Wastewater treatment, Marine Microbial Initiative (MMI) 314274 13445 001273_GCAT 1673 0 0 0 0 USA Surface water of the western Atlantic Ocean Surface water of the western Atlantic Ocean Surface Facultative Rod-shaped Mesophile gram- Free living None Surface water, Marine Nitrite-oxidizer Bacteria Cyanobacteria Nostocales Nostocaceae Nodularia Nodularia spumigena BACTERIAL Nodularia spumigena CCY9414 CCY9414 Nodularia spumigena CCY 9414 Gi00861 Genome incomplete Public Netherlands Institute of Ecology, J. Craig Venter Institute Moore Foundation Stal LJ http://www.nioo.nl/PPAGES/lstal/ N Marine Microbial Initiative (MMI), Environmental 313624 13447 001274_GCAT 193916 639857037 NZ_AAVW00000000 Draft 5314 4945 42 Sanger USA Surface waters of the Baltic Sea Surface waters of the Baltic Sea 55.52500 16.61917 Surface Aerobe Filament-shaped Mesophile gram- Free living None Marine, Surface water Toxic, Bloom forming, Nitrogen fixation Bacteria Cyanobacteria Nostocales Nostocaceae Nostoc Nostoc punctiforme BACTERIAL Nostoc punctiforme ATCC 29133 ATCC 29133 Nostoc punctiforme PCC 73102 PCC 73102, ATCC 29133 Gc00777 Gi00414 Genome Complete and Published Public DOE Joint Genome Institute, Univ of Louisville DOE Meeks JC jcMeeks@ucdavis.edu Npun 2008-04-24 Unpublished Environmental, Biotechnological 63737 216 001275_GCAT 3103 642555144 NC_010628 Complete 8234 6791 1 5 41 Sanger USA gymnosperm cycad Macrozamia sp gymnosperm cycad Macrozamia sp Aerobe Filament-shaped Mesophile gram- Symbiotic Macrozamia sp. None Fresh water, Soil Motile Carbon dioxide fixation, Nitrogen fixation Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Oceanicola Oceanicola batsensis BACTERIAL Oceanicola batsensis HTCC2597 HTCC2597 Oceanicola batsensis HTCC2597 HTCC2597 Gi00862 Genome incomplete Public Oregon State Univ, J. Craig Venter Institute Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm OB Marine Microbial Initiative (MMI), Environmental 252305 13449 001276_GCAT 95979 638341139 NZ_AAMO00000000 Draft 4436 4302 67.3 Sanger USA Seawater collected from a depth of 10m at the Bermuda Atlantic Time Series station in the Sargasso Sea "Sargasso Sea, Atlantic Ocean, BATS" 31.666667 -64.166667 Surface, 10 m Aerobe Rod-shaped Mesophile gram- Free living None Marine Nonmotile Chemoheterotroph Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Oceanicola Oceanicola granulosus BACTERIAL Oceanicola granulosus HTCC2516 HTCC2516 Oceanicola granulosus HTCC2516 HTCC2516 Gi00863 Genome incomplete Public J. Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm OG Environmental, Marine Microbial Initiative (MMI) 314256 13450 001277_GCAT 155790 638341140 NZ_AAOT00000000 Draft 4039 3899 70 Sanger USA Seawater collected from a depth of 10m at the Bermuda Atlantic Time Series station in the Sargasso Sea "Sargasso Sea, Atlantic Ocean, BATS" 31.666667 -64.166667 Surface, 10 m Aerobe Rod-shaped Mesophile gram- Free living None Marine Nonmotile Chemoheterotroph Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Hyphomonadaceae Oceanicaulis Oceanicaulis alexandrii BACTERIAL Oceanicaulis alexandrii HTCC2633 HTCC2633 Oceanicaulis alexandrii HTCC2633 HTCC2633 Gi00864 Genome incomplete Public J. Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm OA Marine Microbial Initiative (MMI), Environmental 314254 13448 001278_GCAT 149505 638341138 NZ_AAMQ00000000 Draft 3166 3121 64 Sanger USA Seawater collected from 10m depth at the Bermuda Atlantic Time Series station in the Sargasso Sea "Sargasso Sea, Atlantic Ocean, BATS" 31.666667 -64.166667 Surface, 10 m Aerobe Rod-shaped Mesophile gram- Free living None Marine Bacteria Proteobacteria Gammaproteobacteria Oceanospirillales Oceanospirillaceae Bermanella BACTERIAL Bermanella marisrubri RED65 RED65 Bermanella marisrubri CCUG 52064, CECT 7074 Gi00865 Genome incomplete Public Kalmar Univ, J. Craig Venter Institute Moore Foundation Pinhassi J http://halia.hik.se/start.jsp?page=members/jarone%20pinhassi RED65 Marine Microbial Initiative (MMI), Environmental 207949 13562 001279_GCAT 155199 638341141 NZ_AAQH00000000 Draft 47 3527 3372 45 Sanger USA Red Sea at a depth of 1 m Red Sea at a depth of 1 m 23.684774 37.485352 1 meter Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Red Sea, Marine Motile Bacteria Proteobacteria Gammaproteobacteria Oceanospirillales Oceanospirillaceae Neptuniibacter BACTERIAL Neptuniibacter caesariensis MED92 MED92 Neptuniibacter caesariensis Gi00866 Genome incomplete Public Kalmar Univ, J. Craig Venter Institute Moore Foundation Pinhassi J http://halia.hik.se/start.jsp?page=members/jarone%20pinhassi MED92 Marine Microbial Initiative (MMI), Environmental 207954 13561 001280_GCAT 154145 638341142 NZ_AAOW00000000 Draft 3873 3773 47 Sanger USA Eastern Mediterranean Sea at a depth of 1m Eastern Mediterranean Sea at a depth of 1m 1 meter Aerobe Helical-shaped Mesophile gram- Free living None Marine 25 - 32 Motile Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Ochrobactrum BACTERIAL Ochrobactrum anthropi Ochrobactrum anthropi Gi00415 Genome incomplete Public Clemson Univ Tomkins JP jtmkns@clemson.edu Medical, Human Pathogen 529 13383 001281_GCAT 157585 0 4800 0 2 0 USA Meningitis Homo sapiens Aerobe Rod-shaped Mesophile gram- Free living Meningitis Sludge, Host, Soil Motile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Leuconostocaceae Oenococcus Oenococcus oeni BACTERIAL Oenococcus oeni ATCC BAA-1163 ATCC BAA-1163 Oenococcus oeni ATCC BAA-1163 ATCC BAA-1163 Gi00416 Genome incomplete Public INRA, Genome Express ANVAR OENOO Food industry, Biotechnological 379360 16668 001282_GCAT 197631 639857018 NZ_AAUV00000000 Draft 1800 1720 37.9 France Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living None Marsh 22 - 26 Nonmotile unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Olavius algarvensis microbiome from Mediterranean sea from Mediterranean sea Mediterranean Gutless Worm Metagenome Gm00017 Metagenome complete Public DOE Joint Genome Institute, Max Planck Institute DOE Dubilier N ndubilie@mpi-bremen.de 2006-10-19 Nature 443, 950-5 Biotechnological 256318 17779 17779 001283_GCAT 0 AASZ00000000 Complete 29883 21154 0 USA Silicate sediments in a bay off Capo di Sant' Andrea, Elba Italy Italy Bay off Capo di Sant'Andrea, Elba, Italy (marine sediment) 42.798747 10.191294 Mesophile None Sediment 26 Sulfate reducer, Symbiont unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil microbial communities from Alaska from Alaska Alaskan Soil Gm00019 Metagenome incomplete Public DOE Joint Genome Institute DOE Handelsman Jo http://www.plantpath.wisc.edu/fac/joh/joh.htm Environmental, Evolutionary 410658 28853 001284_GCAT 0 In progress 8000 0 0 USA Soil from an island in the Tanana River in central Alaska USA Alaska None Soil unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine Bacterioplankton communities from Antarctic from Antarctic Gm00006 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov Evolutionary, Environmental 001285_GCAT 0 In progress Fosmid lucy / pga fgenesb 12000 0 0 WGS USA Late winter and summer Antarctic waters Late winter and summer Antarctic waters Psychrophile None Marine, Antarctic unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Sponge microbiome from Conch Reef, Key Largo Florida from Conch Reef, Key Largo Florida Gm00014 Metagenome incomplete Public Indiana Univ, Center of Marine Biotechnology NSF Hill R http://www.umbi.umd.edu/%7Ecomb/faculty/hill/hill.html Evolutionary, Environmental 001286_GCAT 0 0 0 0 USA Conch Reef at Key Largo in Florida USA Conch Reef at Key Largo in Florida 24.570 -80.272 None Host, Fresh water unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial communities from Monterey Bay from Monterey Bay Monterey Bay Microbial Observatory Gm00018 Metagenome complete Public MIT, DOE Joint Genome Institute NSF DeLong EF delong@mit.edu http://web.mit.edu/be/people/delong.htm Evolutionary, Environmental 408172 27781 001287_GCAT 0 BACs Complete 0 2139 0 USA Concentrated picoplankton cells from Monterey Bay, California. Four environmental genomic libraries were made from four depths: EB000: 3m depth, Station M2 (36.70N, 122.40W), collected 3/17/99. USA Concentrated picoplankton cells from Monterey Bay, California. Four environmental genomic libraries were made from four depths: EB000: 3m depth, Station M2 (36.70N, 122.40W), collected 3/17/99. 36.813797 121.78817551 None Marine, Coastal unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Oral microbiome of Human of Human Gm00029 Metagenome incomplete Public J. Craig Venter Institute NIH-NIDCR Medical 001288_GCAT 0 0 0 0 USA Homo sapiens Oral Homo sapiens None Oral microflora, Host unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Hot spring archaeal communities from Nevada Hot Springs from Nevada Hot Springs Gm00030 Metagenome incomplete Public Univ of Georgia NSF Evolutionary, Environmental 001289_GCAT 0 0 0 0 USA Nevada hot springs Nevada hot springs Thermophile None unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial community from Georgetown SC saltmarsh estuary from Georgetown SC saltmarsh estuary North Inlet Saltmarsh Microbial Observatory (NIMO) Gm00031 Metagenome incomplete Public Purdue Univ NSF Lovell CR http://www.biol.sc.edu/faculty/lovell.html Evolutionary, Environmental 001290_GCAT 0 0 0 0 USA North Inlet Saltmarsh Estuary near Georgetown SC USA North Inlet Saltmarsh Estuary near Georgetown SC 33.20 -79.15 None Marine unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine oligotrophic communities from Northwestern Sargasso Sea from Northwestern Sargasso Sea Oligotrophic Oceanic Microbial Observatory Gm00032 Metagenome incomplete Public UCSB, Oregon State Univ NSF Carlson C http://www.lifesci.ucsb.edu/eemb/faculty/carlson/ Evolutionary, Environmental 001291_GCAT 0 0 0 0 USA Northwestern Sargasso Sea off Bermuda Northwestern Sargasso Sea off Bermuda None Marine unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Hot spring microbial community from Yellowstone Hot Springs from Yellowstone Hot Springs Red Layer Microbial Observatory Gm00033 Metagenome incomplete Public NSF Boomer S boomers@wou.edu Evolutionary, Environmental 001292_GCAT 0 0 0 0 USA Yellowstone National Park USA Yellowstone National Park 44.376262 -110.690383 None Hot spring, Extreme 45 - 60 unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Freshwater microbial communities from Cedars Ultrabasic Springs from Cedars Ultrabasic Springs Cedars Ultrabasic Springs microbial community Gm00035 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov Environmental 001294_GCAT 0 0 0 0 USA None unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fecal viriome of Human of Human Gm00036 Metagenome incomplete Public SDSU, Univ of South California NSF Rohwer F http://phage.sdsu.edu/ Medical 001295_GCAT 0 0 0 0 USA Homo sapiens Gastrointestinal tract Feces Human fecal, Host unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Thermal and Saline microbial communities from China and UK from China and UK Gm00037 Metagenome incomplete Public Univ of Leicester Heaphy S http://www.le.ac.uk/iii/sh1/sh1.html Environmental 001296_GCAT 0 0 0 0 USA unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Hot spring crenarchaeal communities from the Hishikari Goldmine from the Hishikari Goldmine subsurface hot water Gm00038 Metagenome incomplete Public JAMSTEC Nunoura T takuron@jamstec.go.jp Environmental 001297_GCAT 0 0 0 0 Japan Subsurface hot water stream of the Hishikari gold mine in Japan Japan Subsurface hot water stream of the Hishikari gold mine in Japan 36.813797 121.78817551 Thermophile None Fresh water unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Sulfur spring microbial communities from Zodletone Oklahoma from Zodletone Oklahoma Zodletone Spring Microbial Community Gm00040 Metagenome incomplete Public Univ of Oklahoma Elshahed MS Mostafa@ou.edu Environmental 001299_GCAT 0 0 0 0 USA Anaerobic sediments of a mesophilic sulfur spring USA Anaerobic sediments of a mesophilic sulfur spring 34.995616 -98.688953 Anaerobe Mesophile None Fresh water, Sulfur spring, Sediment unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Freshwater hyperthermophilic communities from Arctic Springs from Arctic Springs Gm00041 Metagenome incomplete Public Univ of Bergen Schleper C Christa.Schleper@bio.uib.no Environmental 001300_GCAT 0 0 0 0 Norway Hyperthermophile None unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Freshwater microbial communities from Drinking-water networks from Drinking-water networks Drinking-water Biofilms Gm00042 Metagenome incomplete Public Univ of Goettingen Streit WR wstreit@gwdg.de 2003-12-01 Appl Environ Microbiology 69, 7298-309 Environmental 001301_GCAT 0 Complete 0 0 0 Germany three biofilm samples were collected within the drinking water networks of a town in the northwestern part of Germany in the state of North Rhine-Westphalia three biofilm samples were collected within the drinking water networks of a town in the northwestern part of Germany in the state of North Rhine-Westphalia None Fresh water unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) from Hawaii Ocean Times Series Station (HOT/ALOHA) North Pacific Subtropical Gyre Planktonic Microbial Community Gm00054 Metagenome complete Public DOE Joint Genome Institute DOE DeLong EF delong@mit.edu 2006-01-27 Science 311, 496-503 Bioremediation, Environmental, Ecological, Biotechnological 408172 16339 001323_GCAT 0 ABEF00000000 Complete 2000000 0 0 USA North Pacific Ocean at depths of 10m to 4000m at the Hawaii open-ocean time-series station USA North Pacific Ocean at depths of 10m to 4000m at the Hawaii open-ocean time-series station 22.45 -158.00 10m to 4000m None Marine unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Freshwater microbial communities from Soudan Mine in Minnesota from Soudan Mine in Minnesota Soudan Mine metagenome Gm00043 Metagenome complete Public SDSU Edwards RA redwards@salmonella.org 2006-03-20 BMC Genomics 7, 57 Environmental, Biotechnological 410659 17725 001303_GCAT 0 Complete 0 0 0 454 USA Groundwater seeping from the Soudan Mine in Minnesota USA Groundwater seeping from the Soudan Mine in Minnesota 47.820664 -92.241569 None Fresh water, Groundwater unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Endophytic microbiomes from Poplar from Poplar Gm00045 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov Biotechnological, Agricultural 001304_GCAT 0 37300 0 0 USA Poplar None Host unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Endophytic microbiome from Rice from Rice Gm00046 Metagenome incomplete Public DOE Joint Genome Institute DOE, International Rice Research Institute Tringe SG sgtringe@lbl.gov Biotechnological, Agricultural 37783 001305_GCAT 0 AmPure bead short-insert lucy / pga 100000 0 0 Dideoxysequencing USA Cell separation and DNA extraction by bead beater / phenol extraction 2006 Los Banos, Philippines 14.216464 121.228638 Rice None Host unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Benzene-Degrading Methanogenic communities from Bioreactor from Bioreactor Gm00047 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov Bioremediation, Environmental, Biotechnological 001306_GCAT 0 Draft short-insert and 454-titanium 694321 lucy / pga 8270 192000 0 0 Dideoxysequencing, 454-Titanium USA Toronto, Ontario None Soil Benzene degradation, Methanogen unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Groundwater dechlorinating community (KB-1) from synthetic mineral medium from synthetic mineral medium KB-1 consortium Gm00048 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov Bioremediation, Environmental, Biotechnological 001307_GCAT 0 111170 pUC18 lucy / pga 6361 200000 0 0 Dideoxysequencing USA Kitchener, Ontario Site contaminated with chlorinated ethenes Enrichment culture independent of site for >10 years Canada Kitchener, Ontario 43.449776 -80.489086 Anaerobe Mesophile 7 for optimal dechlorination None Fresh water, Groundwater Dechlorinates Tetrachloroethene unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Wastewater treatment plant Plasmid pool from Switzerland from Switzerland Gm00049 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov Environmental, Biotechnological 001308_GCAT 0 short-insert 79008 pUC18 lucy / pga NA 4363 120000 0 0 Dideoxysequencing USA Wastewater treatment plant Bief, Commune de Morges, Canton Vaud, Switzerland Switzerland Bief, Commune de Morges, Canton Vaud, Switzerland 46.561314 6.536765 None Wastewater treatment plant, Fresh water unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial communities from Near-Shore Anoxic Basin of Saanich Inlet of Vancouver from Near-Shore Anoxic Basin of Saanich Inlet of Vancouver Near-Shore Anoxic Basin of Saanich Inlet Gm00050 Metagenome incomplete Public DOE Joint Genome Institute, Univ of British Columbia DOE Tringe SG sgtringe@lbl.gov Biotechnological, Wastewater treatment, Environmental, Energy production 001309_GCAT 0 In progress 235000 0 0 USA Near-shore anoxic basin of Saanich Inlet of British Columbia Canada Canada Near-shore anoxic basin of Saanich Inlet of British Columbia Canada 48.3629 -123.2841 None Marine unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Freshwater microbial community from New Orleans Floodwaters from New Orleans Floodwaters Gm00064 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov 001310_GCAT 0 10000 0 0 USA USA 29.953238 -90.069003 None unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Freshwater microbial community from Columbia River from Columbia River Columbia River Microbiota Gm00065 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov 001311_GCAT 0 5000 0 0 USA None unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil microbial community from Tallgrass Prairie from Tallgrass Prairie Gm00066 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov Bioenergy, Energy production, Biotechnological 001312_GCAT 0 10000 0 0 USA None unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Poplar biomass decaying microbial community Gm00067 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov Bioenergy, Energy production, Biotechnological 001313_GCAT 0 In progress 0 0 0 USA USA None unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Gut microbiome of Anoplophora glabripennis of Anoplophora glabripennis Gm00068 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov Bioenergy, Energy production, Biotechnological 001314_GCAT 0 Awaiting DNA 0 0 0 USA Anoplophora glabripennis None unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Gut microbiome of Tipula abdominalis of Tipula abdominalis Gm00069 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov Bioenergy, Energy production, Biotechnological 001315_GCAT 0 0 0 0 USA Tipula abdominalis None unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Elephant Grass decomposer microbial community Gm00070 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov Bioenergy, Energy production, Biotechnological 001316_GCAT 0 0 0 0 USA None unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Forestomach microbiome of Macropus eugenii of Macropus eugenii Tammar wallaby forestomach Gm00074 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov Bioenergy, Energy production, Biotechnological 002669_GCAT 0 Draft short-insert 121728 pUC18 lucy / pga 12664 0 0 0 Dideoxysequencing USA CSIRO Sustainable Ecosystems November 2006 and May 2007 Australia Canberra -35.220544 149.126422 Macropus eugenii 9315 female 1.5-4 years Gut Macropus eugenii None Gut unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fossil microbiome from Neanderthal from Neanderthal Neanderthal Metagenome Gm00075 Metagenome complete Public Max Planck Institute, DOE Joint Genome Institute DOE Rubin EM http://www-gsd.lbl.gov/ 2006-11-17 Science 314(5802):1113-8 444079 18311 002670_GCAT 0 Traces, GSS Complete 65 0 0 USA 38,000-year old specimen from Vindija Croatia 38,000-year old specimen from Vindija Croatia 46.21667 16.13333 None unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fossil microbiome from Neanderthal from Neanderthal Neanderthal Metagenome Gm00076 Metagenome complete Public Max Planck Institute Green RE green@eva.mpg.de 2006-11-17 Nature 444, 330-6 18313 002671_GCAT 0 CAAN01000000 Complete 0 0 0 454 Germany Vi-80 Neanderthal bone from Vindija Croatia Croatia Vi-80 Neanderthal bone from Vindija Croatia 46.226082 16.125326 None unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Hot spring viral communities from Yellowstone Hot Springs from Yellowstone Hot Springs Viral Metagenome from Hot Springs Gm00077 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov 433727 20821 002672_GCAT 0 Traces 0 0 0 USA Alkaline hot springs in Yellowstone National Park USA Alkaline hot springs in Yellowstone National Park 44.376262 -110.690383 Thermophile None Hot spring, Fresh water 74-93 Alkaline unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Lung microbiome of Human of Human Human Lung Microbial Community Gm00079 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov 433733 19103 002674_GCAT 0 0 0 0 USA Patients whose airways were colonized with P. aeruginosa during mechanical ventilation Patients whose airways were colonized with P. aeruginosa during mechanical ventilation Homo sapiens Airways Endotracheal tract Homo sapiens Endotracheal tract, Host, Human airways unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine viroplankton communities from surface and estuarine waters from surface and estuarine waters Gm00072 Metagenome incomplete Public J. Craig Venter Institute NSF Williamson S swilliamson@venterinstitute.org 001317_GCAT 0 0 0 0 USA None Marine unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fungal communities from the Arctic from the Arctic Gm00073 Metagenome incomplete Public Univ of Alaska Fairbanks NSF Taylor D fflt@uaf.edu 001318_GCAT 0 0 0 0 USA Psychrophile None unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Intestinal microbiome of Mouse of Mouse lean and obese mouse gut metagenome overview Gm00071 Metagenome complete Public Washington Univ NIH, Keck Foundation Gordon JI jgordon@wustl.edu 2006-12-21 Nature 444, 1027-131 Medical 410661 17385 001319_GCAT 0 AATF01000000 Complete 199800 13892 0 Sanger, 454-GS20 USA Cecal contents from Mus musculus strain C57BL/6J Cecal contents from Mus musculus strain C57BL/6J Mus musculus lean and obese Gastrointestinal tract Intestinal tract Mus musculus None Host, Mouse Gut unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fecal microbiome of Human of Human from distal gut of healthy adults Human Distal Gut Biome Gm00052 Metagenome complete Public Stanford univ, Washington Univ, J. Craig Venter Institute NIH Gill SR http://www.tigr.org/faculty/Gill_Steven/index.shtml 2006-06-02 Science 312, 1355-9 Medical 16729 001321_GCAT 0 AAQK00000000, AAQL01000000 Complete 72000 46503 0 USA Fecal specimen of healthy human Fecal specimen of healthy human Homo sapiens Adult Healthy Gastrointestinal tract Gut Homo sapiens None Human fecal, Host unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine viral communities from Chesapeake Bay from Chesapeake Bay Chesapeake Bay virioplankton Gm00053 Metagenome incomplete Public Univ of Delaware Wommack E http://www.virusecology.org/MOVE/K.%20Eric%20Wommack.html 408172 16522 001322_GCAT 0 GSS 4400 0 0 USA Water samples from Chesapeake in September on 2002 September on 2002 USA Water samples from Chesapeake in September on 2002 37.100 -75.593 Marine unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fecal viriome of Human of Human healthy adults Gm00055 Metagenome complete Public Genome Institute of Singapore Ruan Y ruanyj@gis.a-star.edu.sg 2006-01-01 PLoS Biology 4, e3 239364 16209 001324_GCAT 0 AAMI00000000, AAMG00000000, AAMH00000000 Complete 0 0 0 Singapore Three fecal samples from two healthy human individuals Three fecal samples from two healthy human individuals Homo sapiens Gastrointestinal tract Feces Human fecal, Host unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine RNA viral communities from coastal samples from coastal samples Uncultured Marine RNA Virus Gm00056 Metagenome complete Public Univ of British Columbia 2006-06-23 Science 312, 1795-8 375198 17367 001325_GCAT 0 GSS Complete 0 0 0 Canada Strait of Georgia, adjacent to Powell River, BC, on 13-Jul-2004, Latitude of 49.86 and Longitude of -124.60 3-Jul-2004 Canada Strait of Georgia, adjacent to Powell River, BC, on 13-Jul-2004, Latitude of 49.86 and Longitude of -124.60 49.86 -124.60 Marine MICROBIAL Marine microbial communities from North Atlantic deep water from North Atlantic deep water Deep Marine Bacterial Metagenome Gm00057 Metagenome complete Public Marine Biological Laboratory Sogin M sogin@mbl.edu 2006-08-08 PNAS 103, 12115-20 408172 17381 001326_GCAT 0 Traces Complete 0 0 0 USA Seep water masses of the North Atlantic and diffuse flow hydrothermal vent Seep water masses of the North Atlantic and diffuse flow hydrothermal vent None Deep sea, Marine unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Saline water microbial communities from Bras del Port saltern in Santa Pola Spain from Bras del Port saltern in Santa Pola Spain crystallizer pond Marine NaCl-Saturated Brine Metagenome Gm00058 Metagenome incomplete Public Univ Miguel Hernandez Rodriguez-Valera F frvalera@umh.es 2006-07-04 BMC Genomics 7, 171 001327_GCAT 0 Genbank Complete 2400 0 0 Canada Crystallizer pond CR30 in the multi-pond saltern "Bras del Port" located in Santa Pola (Alicante, Spain, 38 12' N, 00 36' W) in November 2002 November 2002 Spain Crystallizer pond CR30 in the multi-pond saltern ""Bras del Port"" located in Santa Pola (Alicante, Spain, 38 12' N, 00 36' W) in November 2002 38.12 -0.36 Marine solar slatern 30 unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine Plankton communities from deep Mediterranean sea from deep Mediterranean sea Ionian station Km3 Deep Mediterranean Sea Small Plankton Metagenome Gm00124 Metagenome complete Public Univ Miguel Hernandez Rodriguez-Valera F frvalera@umh.es 2007-09-19 PLoS ONE 2(9), e914 Environmental 408172 19587 003216_GCAT 0 GSS Complete 7200 0 50 Spain 3010m depth in the Mediterranean Sea, Ionian Km3 Station (36 29 98 N, 15 39 97 E, salinity 38.75 PSU 3010m depth in the Mediterranean Sea, Ionian Km3 Station (36 29 98 N, 15 39 97 E, salinity 38.75 PSU 36.4999 15.693611 3010m depth Marine 13.9 unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Freshwater microbial community from Contaminated Groundwater from Contaminated Groundwater Gm00007 Metagenome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bioremediation, Environmental, Ecological, Biotechnological 37789 001328_GCAT 2006543007 Draft 0 0 0 Sanger USA Natural and Accelerated Bioremediation Research (NABIR) Field Research Center (FRC), Well FW-010 07-JAN-05 DOE Field Research Center Area 3 Well FW106, Oakridge, TN 36.11569 -84.248657 3.7 None Groundwater, Fresh water Acidophile unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Acid Mine Drainage (ARMAN) euryarchaeal community from Richmond mine from Richmond mine Gm00008 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov Biotechnological, Environmental, Ecological 001329_GCAT 0 0 0 0 USA None Fresh water Acidophile Archaea Korarchaeota Candidatus Korarchaeum Candidatus Korarchaeum cryptofilum ARCHAEAL Candidatus Korarchaeum cryptofilum OPF8 OPF8 Korarchaeote OPF1-KOR Candidatus Korarchaeum cryptofilum OPF8 Gc00747 Gi02262 Metagenome Complete and Published Public DOE Joint Genome Institute DOE Elkins J jelkins@ucsd.edu Kcr 2008-03-18 PNAS 105, 8102-7 Evolutionary 374847 16525 001331_GCAT 641522611 NC_010482 Complete 1590 1707 1 0 49 Sanger USA Enriched cells originate from Obsidian Pool, Yellowstone National Park, Wyoming, USA, Physically purified cells grown in a continuous-flow enrichment culture USA Obsidian Pool, Yellowstone National Park, Wyoming "44,393,704" "-110,567,703" Mesophile gram- Free living None unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Endophytic crenarchaeal communities of Plant roots of Plant roots Root-Colonizing Crenarchaeotes Gm00011 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov Environmental, Ecological 001332_GCAT 0 0 0 0 USA Mesophile None Denitrifying unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Wastewater Terephthalate-degrading communities from Bioreactor from Bioreactor Terephthalate-Degrading microbial community Gm00012 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov Biotechnological, Wastewater treatment, Plastic production 37781 001333_GCAT 2007915000 0 0 0 USA Singapore National University of Singapore 1.29973 103.771791 Thermophile None 55 unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Gut microbiome of Costa Rica Nasutitermes termites of Costa Rica Nasutitermes termites from P3 luminal contents Termite Gut Metagenome Gm00013 Metagenome complete Public DOE Joint Genome Institute DOE Hugenholtz P PHugenholtz@lbl.gov 2007-11-26 Nature 450, 560-565 Energy production, Biotechnological 433724 19107 001334_GCAT 2004080001 ABDH00000000 Complete 0 0 0 USA Proctodeal segment 3 (P3) gut lumen fluid collected from the termite Nasutitermes sp from Costa Rica (N10.11.260 W083.51.345) at 310 m altitude Costa Rica Proctodeal segment 3 (P3) gut lumen fluid collected from the termite Nasutitermes sp from Costa Rica (N10.11.260 W083.51.345) at 310 m altitude 10.11 -83.51 310 m Nasutitermes sp 46570 Nasutitermes sp None Host Cellulose degrader, Cellulose degrader, Lignin degrader, Symbiont unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Wastewater EBPR microbial communities from Bioreactor from Bioreactor EBPR Sludge Community Metagenome Gm00015 Metagenome incomplete Public DOE Joint Genome Institute DOE Hugenholtz P PHugenholtz@lbl.gov 2006-09-29 Nat. Biotechnol. 24, 1263-9 Wastewater treatment, Biotechnological 17663 001335_GCAT 0 AATN00000000, AATO01000000 Complete 109657 64844 0 USA Activated sludge mixed liquor from Nine Springs Wastewater Treatment Plant Madison WI July 2004 USA Nine Springs Wastewater Treatment Plant Madison WI 43.035278 -89.356944 Mesophile 7-7.3 None Sludge Phosphate removal unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine viral communities from Arctic Ocean environments from Arctic Ocean environments Marine Phage Metagenome overview Gm00060 Metagenome complete Public SDSU, 454 Life Sciences Moore Foundation Edwards R http://phage.sdsu.edu/members/profile.php?user=rob 2006-09-25 PLoS Biology 4, e368 Marine Microbial Initiative (MMI), Environmental 408172 18225 000002_GCAT 0 Complete 179283 216746 0 454 USA Environmental samples from four Oceanic regions collected over a decase September 1 to October 31, 2002 Arctic Ocean Marine 14.7 - 30.5 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Oligobacter sp. SKA48 BACTERIAL Oligobacter sp SKA48 SKA48 Oligobacter sp. SKA48 Gi00867 Genome incomplete Public Univ of Kalmar, J. Craig Venter Institute Moore Foundation Hagstrom A http://halia.hik.se/start.jsp?page=members/ake%20hagstrom Marine Microbial Initiative (MMI), Environmental 314257 13565 001341_GCAT 0 2000 0 0 USA Seawater obtained at a depth of 2-5m from the Skagerrak Sea in the North Atlantic Ocean Seawater obtained at a depth of 2-5m from the Skagerrak Sea in the North Atlantic Ocean Mesophile gram- Free living None Marine Slow growing, Small Oligotroph Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Pseudovibrio Pseudovibrio sp. JE062 BACTERIAL Pseudovibrio sp. JE062 JE062 Pseudovibrio sp. JE062 Gi01692 Genome incomplete Public Univ of Maryland, IGS, J. Craig Venter Institute Moore Foundation Hill R http://www.umbi.umd.edu/%7Ecomb/faculty/hill/hill.html Marine Microbial Initiative (MMI), Environmental 439495 19345 001342_GCAT 0 NZ_ABXL00000000 Draft 53 5717 5297 52 USA From the sponge Mycale laxissima collected in the Florida Keys at a water depth of 20 meters USA Florida Keys 24.95306 -80.46583 20 meters Facultative Mesophile gram- Symbiotic Mycale laxissima 458504 None Host, Marine Denitrifying Bacteria Verrucomicrobia Opitutae Opitutaceae Opitutus Opitutus terrae BACTERIAL Opitutus terrae PB90-1 PB90-1 Opitutus terrae PB90-1 DSM 11246 Yes Gc00764 Gi01027 Genome Complete and Published Public DOE Joint Genome Institute DOE Smidt H Hauke.Smidt@wur.nl Oter 2008-04-08 Unpublished Evolutionary 452637 19989 001343_GCAT 1561 641522643 NC_010571 Complete 5957 4767 1 0 65.3 USA Rice paddy soil Rice paddy soil Anaerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Singles, Chains, Pairs None Soil Motile Bacteria Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Paenibacillus larvae BACTERIAL Paenibacillus larvae BRL-230010 BRL-230010 Paenibacillus larvae subsp. larvae BRL-230010 Gi00422 Genome incomplete Public BCM-HGSC NIH-NIAID Weinstock G gweinsto@watson.wustl.edu http://www.bcm.tmc.edu/pa/weinstock.htm Plarl Animal Pathogen, Medical, Insect Pathogen 392917 13476 001344_GCAT 641736255 NZ_AARF00000000 Draft 4016 5085 44.1 USA Rod-shaped Sporulating Mesophile gram+ Free living American foulbrood Pathogen Bacteria Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Paenibacillus polymyxa BACTERIAL Paenibacillus polymyxa E681 E681 Paenibacillus polymyxa E681 Gi00423 Genome incomplete Public KRIBB Agricultural, Biotechnological 349520 16065 001345_GCAT 0 Complete 5000 0 0 Korea Rod-shaped Sporulating Mesophile gram+ Free living None Rhizosphere Plant-growth-promoting rhizobacteria, Antimicrobial activities, Non-Pathogen, Biofertilizer Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Pantoea BACTERIAL Pantoea citrea Gi00426 Genome incomplete Proprietary Genencor Genencor Plant Pathogen, Agricultural 53336 001346_GCAT 237004 0 Complete 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pink disease Fruits, Soil Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Pantoea Pantoea stewartii BACTERIAL Pantoea stewartii stewartii DC283. DC283. Pantoea stewartii subsp. stewartii DC283 Gi00427 Genome incomplete Public Univ of Wisconsin, BCM-HGSC NSF, USDA Perna N perna@svm.vetmed.wisc.edu Plant Pathogen, Agricultural 660596 39561 001348_GCAT 366513 0 In progress 144906 Sanger, 503412 454 19x Sanger, 9.6x 454 101 5000 0 0 454, Sanger USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Leaf blight, Stewart's bacterial wilt Host Nonmotile Pathogen Bacteria Proteobacteria Alphaproteobacteria Parvularculales Parvularculaceae Parvularcula Parvularcula bermudensis BACTERIAL Parvularcula bermudensis HTCC2503 HTCC2503 Parvularcula bermudensis HTCC2503 HTCC2503 Gi00868 Genome incomplete Public J. Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm PB Marine Microbial Initiative (MMI), Environmental 314260 13509 001349_GCAT 111917 638341145 NZ_AAMU00000000 Draft 2907 2823 60.8 Sanger USA Seawater collected from a depth of 10m at the Bermuda Atlantic Time Series station in the Sargasso Sea "Sargasso Sea, Atlantic Ocean, BATS" 31.666667 -64.166667 10 meters Aerobe Mesophile gram- Free living None Marine Motile Chemoheterotroph Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurella Pasteurella multocida BACTERIAL Pasteurella multocida P-3480 P-3480 Pasteurella multocida subsp. multocida str. 3480 Gi00433 Genome incomplete Public Univ of Oklahoma USDA/CSREES Gillaspy AF allison-gillaspy@ouhsc.edu Agricultural, Animal Pathogen, Cattle Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 584721 32177 001350_GCAT 336462 0 0 0 0 USA Pneumonic lesion of a pig Pneumonic lesion of a pig Sus scrofa Airways Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Chains, Pairs, Singles Porcine Pneumonic Pasteurellosis, Swine Progressive Atrophic Rhinitis (PAR) Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Pasteuriaceae Pasteuria Pasteuria nishizawae BACTERIAL Pasteuria nishizawae North American North American Pasteuria nishizawae str. North American Gi00434 Genome incomplete Public Univ of Illinois at Urbana-Champaign Pnish020000 Agricultural, Nematode pathogen, Biocontrol 238030 441 001351_GCAT 638341146 NZ_AACR00000000 Draft 0 29 48.4 Sanger USA Sporulating Mesophile gram+ Symbiotic Parasitic Heterodera glycines Unknown Host Nematode parasite, Pathogen Bacteria Firmicutes Bacilli Bacillales Pasteuriaceae Pasteuria BACTERIAL Pasteuria penetrans Gi00435 Genome incomplete Public Univ of Florida USDA Preston J jpreston@ufl.edu Agricultural, Nematode pathogen, Biocontrol 86005 001352_GCAT 62225 0 0 0 0 USA Sporulating Mesophile gram+ Symbiotic Parasitic Unknown Host Pathogen, Nematode parasite Bacteria Firmicutes Bacilli Bacillales Pasteuriaceae Pasteuria BACTERIAL Pasteuria penetrans. Gi00436 Genome incomplete Public Rothamsted Research Ltd, North Carolina State Univ Davies K http://www.rothamsted.bbsrc.ac.uk/ppi/staff/kgd.html Agricultural, Nematode pathogen, Biocontrol 86005 001353_GCAT 62225 0 0 0 0 USA Sporulating Mesophile gram+ Symbiotic Parasitic Unknown Host Pathogen, Nematode parasite Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae Pedomicrobium BACTERIAL Pedomicrobium manganicum Gi01552 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Astrobiological, Biotechnological, Bioremediation 47498 001354_GCAT 4617 0 0 0 0 USA Mesophile gram- Free living None Soil, Fresh water, Surface of desert rocks Radiation resistant Bacteria Aquificae Aquificae (class) Aquificales Aquificaceae Hydrogenobaculum Hydrogenobaculum sp. Y04AAS1 BACTERIAL Hydrogenobaculum sp. Y04AAS1 Y04AAS1 Hydrogenobaculum sp. Y04AAS1 Gc00844 Gi01926 Genome Complete and Published Public DOE Joint Genome Institute DOE Mead D dmead@lucigen.com HY04AAS1 2008-08-06 J. Bacteriology 191, 1992-3 Astrobiological, Biotechnological, Bioremediation 380749 18891 002550_GCAT 170563 642555132 NC_011126 Complete 1559 1691 1 0 34 Sanger USA "Obsidian Pool, Acidic hot spring in Yellowstone National Park" USA Obsidian Pool, Acidic hot spring in Yellowstone National Park 44.376262 -110.690383 Aerobe Rod-shaped Nonsporulating Thermophile gram- Free living None Fresh water 58 Motile Bacteria Aquificae Aquificae (class) Aquificales Hydrogenothermaceae Persephonella Persephonella marina BACTERIAL Persephonella marina EX-H1 EX-H1 Persephonella marina EX-H1 DSM 14350 Yes Gc00938 Gi00443 Genome Complete and Published Public Portland State Univ, J. Craig Venter Institute NSF Reysenbach AL reysenbacha@pdx.edu PERMA 2009-03-25 J. Bacteriology 191, 1992-1993 Biotechnological 123214 12526 001355_GCAT 30394 643692030 NC_012440 Complete 1930 1981 1 1 37.2 USA Deep sea hydrothermal vent on the East Pacific Rise Deep sea hydrothermal vent on the East Pacific Rise 9.83416 104.284722 Microaerophilic Rod-shaped Nonsporulating Thermophile gram- Free living None Marine 73 Motile Hydrogen oxidizer, Nitrate reducer Chemolithoautotroph Bacteria Thermotogae Thermotogae (class) Thermotogales Thermotogaceae Petrotoga BACTERIAL Petrotoga miotherma ATCC 51224 ATCC 51224 Petrotoga miotherma ATCC 51224 Gi00445 Genome incomplete Proprietary Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Oil industry, Biotechnological 28237 13340 001357_GCAT 1217 0 2177 2099 0 USA Anaerobe Rod-shaped Nonsporulating Thermophile gram- Free living None Oil fields 55 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Nocardiaceae Rhodococcus BACTERIAL Rhodococcus equi ATCC 33701 ATCC 33701 ATCC 33701 Gi00509 Genome incomplete Public Univ of Guelph Medical, Animal Pathogen 43767 001359_GCAT 13589 0 0 0 0 Canada Aerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Filaments Pneumonia Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium profundum BACTERIAL Photobacterium profundum 3TCK 3TCK Photobacterium profundum 3TCK Gi00869 Genome incomplete Public Scripps Institute of Oceanography, J. Craig Venter Institute Moore Foundation, NSF Bartlett DH http://mbrdbeta.ucsd.edu/labpages/bartlett_lab.cfm P Marine Microbial Initiative (MMI), Environmental 314280 13563 001360_GCAT 202767 638341150 NZ_AAPH00000000 Draft 6096 5861 42 Sanger USA San Diego Bay USA San Diego Bay 32.00000 -117.00000 Surface Facultative Rod-shaped Nonsporulating Psychrophile gram- Free living None Marine 15 Motile Piezophile, Barophile Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium sp. SKA34 BACTERIAL Photobacterium sp SKA34 SKA34 Photobacterium sp. SKA34 Gi00870 Genome incomplete Public Univ of Kalmar, J. Craig Venter Institute Moore Foundation Hagstrom A http://halia.hik.se/start.jsp?page=members/ake%20hagstrom SKA Marine Microbial Initiative (MMI), Environmental 121723 13566 001361_GCAT 638341151 NZ_AAOU00000000 Draft 4945 4869 39.6 Sanger USA North Atlantic at a depth of 2-5m Sweden North Atlantic at a depth of 2-5m 58.94083 11.07944 2-5 meters Mesophile gram- Free living None Marine Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Photorhabdus Photorhabdus asymbiotica BACTERIAL Photorhabdus asymbiotica asymbiotica ATCC 43949 ATCC 43949 Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 ATCC 43949 Gc01059 Gi00448 Genome Complete and Published Public Sanger Institute, Univ of Bath BBSRC Parkhill J http://www.sanger.ac.uk/Users/parkhill/ PAU 2009-07-14 BMC Genomics 10, 302 Medical, Human Pathogen 553480 30577 001362_GCAT 0 NC_012962 Complete Level 6: Finished 5.5-6Kb, 2.8-5.5Kb pMAQ1b, pUC19 Phrap 11x Orpheus, Glimmer 5064 4555 1 1 42 Sanger United Kingdom blood of an 80 year old female patient with endocarditis, in Maryland, USA. formerly referred to as Xenorhabdus luminescens strain 2 1977 USA Maryland, USA Homo sapiens Female 80 years old Patient with endocarditis Blood Facultative Rod-shaped Nonsporulating Mesophile gram- Symbiotic Nematode Soft tissue infection, Systemic infection Nematode symbiont, Soft tissue, Insect gut microflora, Host, Blood Motile Pathogen, Bioluminescent Bacteria Planctomycetes Planctomycetacia Planctomycetales Planctomycetaceae Planctomyces Planctomyces maris BACTERIAL Planctomyces maris DSM 8797 DSM 8797 Planctomyces maris DSM 8797 DSM 8797 Yes Gi01149 Genome incomplete Public Max Planck Institute, J. Craig Venter Institute Moore Foundation Amann R ramannmpi-bremen.de http://www.mpi-bremen.de/en/Rudolf_Amann.html PM Biotechnological, Ecological, Marine Microbial Initiative (MMI), Evolutionary, Environmental 344747 15662 001363_GCAT 239348 640963032 NZ_ABCE00000000 Draft 7775 6589 50 USA "Coastal bacterioplankton, Puget Sound, Washington" USA Coastal bacterioplankton, Puget Sound, Washington 48.40000 -122.60000 Neretic water Aerobe Oval-shaped Mesophile gram- Free living None Coastal, Marine Motile Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Polaribacter BACTERIAL Polaribacter filamentus Polaribacter filamentus Gi00476 Genome incomplete Proprietary Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Biotechnological 53483 13335 001364_GCAT 2357 0 4184 3969 0 USA Aerobe Rod-shaped Psychrophile gram- Free living None Fresh water Nonmotile Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter irgensii BACTERIAL Polaribacter irgensii 23-P 23-P Polaribacter irgensii 23-P ATCC 700398 Yes Gi00871 Genome incomplete Public Desert Research Institute, J. Craig Venter Institute Moore Foundation Murray A http://www.dri.edu/People/alison/ PI Marine Microbial Initiative (MMI), Environmental 313594 13451 001365_GCAT 152060 638341152 NZ_AAOG00000000 Draft 2745 2636 35 Sanger USA surface water from the Penola Strait Antarctica surface water from the Penola Strait Antarctica -65.25000 -64.26667 Surface Aerobe Rod-shaped Psychrophile gram- Free living None Surface water, Marine Motile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella intermedia BACTERIAL Prevotella intermedia 17 17 Prevotella intermedia 17 Gi00478 Genome incomplete Public J. Craig Venter Institute NIH-NIDCR Heidelberg JF jheidel@tigr.org Medical, Human Pathogen 246198 175 001366_GCAT 17 0 Complete 2800 0 0 USA Human periodontal pocket Human periodontal pocket Homo sapiens Oral Periodontal Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Periodontal infection Host Nonmotile Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella ruminicola BACTERIAL Prevotella ruminicola 23 23 Prevotella ruminicola 23 Gi00479 Genome incomplete Public Ohio State Univ, J. Craig Venter Institute USDA Nelson KE http://www.tigr.org/~kenelson/ Medical, Human Pathogen 264731 10619 001367_GCAT 23 0 0 0 0 USA Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Periodontal infection Host Nonmotile Pathogen Bacteria Cyanobacteria Prochlorales Prochloraceae Prochloron BACTERIAL Prochloron didemni Prochloron didemni Gi00723 Genome incomplete Public Univ of Utah, UCSD, J. Craig Venter Institute NSF Eisen JA http://www.tigr.org/~jeisen/ Biotechnological 1216 13452 001372_GCAT 0 0 0 0 USA Mesophile gram- Free living Lissoclinum patella None Fresh water, Obligate symbiont Patellamides producer Photosynthetic Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Propionibacterium BACTERIAL Propionibacterium acnes Gi00481 Genome incomplete Proprietary Corixa, Genset Medical, Human Pathogen 1747 001373_GCAT 144156 0 Complete 2800 0 0 France Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Acne Human skin, Host Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Propionibacterium BACTERIAL Propionibacterium freudenreichii Gi00483 Genome incomplete Proprietary QIAGEN FCDF, DSM Biotechnological, Lactic acid production, Food industry 1744 001374_GCAT 12730 0 2640 0 0 Germany Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Propionibacterium Propionibacterium freudenreichii BACTERIAL Propionibacterium freudenreichii shermanii CIP 103027 CIP 103027 Propionibacterium freudenreichii subsp. shermanii CIP 103027 ATCC9614 Yes Gi00772 Genome incomplete Public INRA, Genoscope Dimova D dimova@labtechno.roazhon.inra.fr Biotechnological, Lactic acid production, Food industry 380773 16705 001375_GCAT 0 2500 0 67 France Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Nonmotile Bacteria Verrucomicrobia Verrucomicrobiae Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter BACTERIAL Prosthecobacter dejongeii ATCC 27091 ATCC 27091 Prosthecobacter dejongeii ATCC 27091 Yes Gi00484 Genome incomplete Proprietary Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Evolutionary 48465 13453 001376_GCAT 1588 0 4554 5003 0 USA Aerobe Rod-shaped Mesophile gram- Free living None Fresh water Nonmotile Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris aestuarii BACTERIAL Prosthecochloris aestuarii SK413, DSM 271 SK413, DSM 271 Prosthecochloris aestuarii DSM 271 DSM 271 Yes Gc00835 Gi00485 Genome Complete and Published Public DOE Joint Genome Institute DOE Bryant DA dab14@psu.edu Paes 2008-07-18 Unpublished Biotechnological 290512 12749 001377_GCAT 130703 642555149 NC_011059 Complete 2512 2451 1 1 50 Sanger USA Coccus-shaped Mesophile gram- Free living None Fresh water 30 Nonmotile Nitrogen fixation, Green sulfur Photosynthetic Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Proteus BACTERIAL Proteus mirabilis Gi00487 Genome incomplete Proprietary Genome Therapeutics Human Pathogen, Opportunistic Pathogen, Medical 584 001379_GCAT 176061 0 Complete 0 0 0 USA Intestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Urinary tract infection, Surgical wound infection, Septicemia, Pyelonephritis, Pneumonia, Encephalitis Intestinal microflora, Host 37 Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Proteus Proteus mirabilis BACTERIAL Proteus mirabilis HI4320 HI4320 Proteus mirabilis HI4320 Gc00758 Gi00488 Genome Complete and Published Public Univ of Maryland, Sanger Institute Wellcome Trust Mobley H hmobley@umich.edu PMI 2008-05-20 J. Bacteriology 190, 4027-37 Human Pathogen, Opportunistic Pathogen, Medical 529507 12624 001380_GCAT 642555150 NC_010554 Complete 8x 4063 3784 1 1 38.9 Sanger International Urine of a nursing home patient with a long term (>30 day) indwelling urinary catheter Urine of a nursing home patient with a long term (>30 day) indwelling urinary catheter Homo sapiens Adult Patient with urine catheter Urogenital tract Urine Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Urolithiasis, Urinary tract infection, Encephalitis, Pneumonia, Pyelonephritis, Septicemia, Surgical wound infection, Ulcer Intestinal microflora, Host 37 Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas tunicata BACTERIAL Pseudoalteromonas tunicata D2 D2 Pseudoalteromonas tunicata D2 CCUG 26757 Gi05080 Gc00887 Genome complete Public Univ of Georgia, J. Craig Venter Institute Moore Foundation Thomas T t.thomas@unsw.edu.au PTD Marine Microbial Initiative (MMI), Environmental 87626 13456 006007_GCAT 128175 638341157 NZ_AAOH00000000 Complete Level 2: High-Quality Draft Glimmer 4992 4733 1 40 Sanger USA Adult tunicate surface at a depth of 10 m in Gullmarsfjorden off of the west coast of Sweden Sweden Gullmarsfjorden off of the west coast of Sweden 58.261661 11.439600 10 meters Ciona intestinalis Facultative Rod-shaped Nonsporulating Mesophile Green gram- Free living None Marine 28 Motile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas BACTERIAL Pseudomonas aeruginosa clinical isolates pacs416 (early) clinical isolates pacs416 (early) Gi01162 Genome incomplete Public Univ of Washington Animal Pathogen, Medical, Human Pathogen 287 001383_GCAT 249834 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Cystic Fibrosis Soil, Host, Fresh water Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas BACTERIAL Pseudomonas aeruginosa clinical isolates pacs5296(late) clinical isolates pacs5296(late) Gi01163 Genome incomplete Public Univ of Washington Animal Pathogen, Medical, Human Pathogen 287 001384_GCAT 249834 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Opportunistic infection, Cystic Fibrosis Soil, Host, Fresh water Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa PACS2 PACS2 Pseudomonas aeruginosa PACS2 Gi01646 Genome incomplete Public Univ of Washington PaerPA Animal Pathogen, Medical, Human Pathogen 388272 16851 001385_GCAT 638341161 NZ_AAQW00000000 Draft 6492 5753 66.3 Sanger USA Clinical isolate Clinical isolate Homo sapiens Patient Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Nocosomial infection, Cystic Fibrosis Soil, Host, Fresh water 37 Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa 2192 2192 Pseudomonas aeruginosa 2192 Gi01210 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Paer Animal Pathogen, Medical, Human Pathogen 350703 16171 001386_GCAT 2192 638341158 NZ_AAKW00000000 Draft 9.5x 6826 6203 66.2 Sanger USA Cystic fibrosis patient with cystic fibrosis Cystic fibrosis patient Homo sapiens Patient Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Cystic Fibrosis, Opportunistic infection Host, Soil 25 - 30 Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa C3719 C3719 Pseudomonas aeruginosa C3719 Gi01211 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu PaerC Animal Pathogen, Medical, Human Pathogen 350704 16170 001387_GCAT 638341159 NZ_AAKV00000000 Draft 9.5x 6147 5696 66.5 Sanger USA "Epidemic strain from Manchester, England" United Kingdom Epidemic strain from Manchester, England 53.480713 -2.234376 Homo sapiens Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Cystic Fibrosis Fresh water, Soil, Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa LESB58 LESB58 Pseudomonas aeruginosa LESB58 Gc00915 Gi01253 Genome Complete and Published Public Sanger Institute, Univ of Liverpool, Univ of British Columbia, Simon Fraser Univ Wellcome Trust Parkhill J parkhill@sanger.ac.uk 2008-12-24 Genome Research 19(1):12-23 Animal Pathogen, Medical, Human Pathogen 557722 31101 001388_GCAT 643348568 NC_011770 Complete 6601 5925 1 0 66 USA Liverpool Cystic Fibrosis (CF) clinic center member of the Liverpool epidemic strains (LES) Liverpool Cystic Fibrosis (CF) clinic center Homo sapiens Patient Airways Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Cystic Fibrosis Soil, Host, Fresh water Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae BACTERIAL Pseudomonas anaerooleophila HD-1 HD-1 Gi00490 Genome incomplete Public Takara Bio Inc, Kyoto Univ Kitagawa M kitagawam@takara-bio.co.jp Petroleum production, Biotechnological 286 001389_GCAT 0 Complete 4500 5451 0 Japan Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens BACTERIAL Pseudomonas fluorescens SBW25 SBW25 Pseudomonas fluorescens SBW25 Gc01005 Gi00493 Genome Complete and Published Public Sanger Institute, Univ of Birmingham, Univ of Oxford BBSRC Thomson NR nrt@sanger.ac.uk PFLU 2009-05-11 Genome Biology 10(5):R51 Bioremediation, Environmental 216595 31229 001390_GCAT 643692031 NC_009444, NC_012660 Complete Level 6: Finished 2-3Kb, 3-4Kb, 6-9Kb pOTW12, pMAQ1Sac 9x 6722 6106 1 1 60.5 Sanger United Kingdom leaf surfaces of a sugar beet plant Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Motile Non-Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida BACTERIAL Pseudomonas putida PRS1 PRS1 Pseudomonas putida PRS1 Gi00494 Genome incomplete Public J. Craig Venter Institute DOE Nelson KE http://www.tigr.org/~kenelson/ Bioremediation, Environmental 160489 268 001391_GCAT 0 6100 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Soil Motile Non-Pathogen Heterotroph Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Psychroflexus Psychroflexus torquis BACTERIAL Psychroflexus torquis ATCC 700755 ATCC 700755 Psychroflexus torquis ATCC 700755 ATCC 700755 Gi00877 Genome incomplete Public Univ of Tasmania, J. Craig Venter Institute Moore Foundation Bowman J http://www.scieng.utas.edu.au/agsci/pagedetails.asp?lpersonId=111 P Environmental, Marine Microbial Initiative (MMI) 313595 13542 001395_GCAT 202536 638341165 NZ_AAPR00000000 Draft 4312 6904 35 Sanger USA Prydz Bay, Antarctica from a sea-ice algal assemblage Isolation by enrichment on marine agar Prydz Bay, Antarctica from a sea-ice algal assemblage -69 75 Sea-ice algal assemblage Aerobe Psychrophile gram- Free living None Marine Motile Chemoheterotroph Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Psychromonadaceae Psychromonas Psychromonas sp. CNPT3 BACTERIAL Psychromonas sp CNPT3 CNPT3 Psychromonas sp. CNPT3 Gi00878 Genome incomplete Public Scripps Institute of Oceanography, J. Craig Venter Institute Moore Foundation, NSF Yayanos AA http://mbrd.ucsd.edu/labpages/yayanos_lab.cfm PCNPT Environmental, Marine Microbial Initiative (MMI) 314282 13583 001396_GCAT 133700 638341167 NZ_AAPG00000000 Draft 2937 2903 39 Sanger USA Central north Pacific Ocean at a depth of 5800m Central north Pacific Ocean at a depth of 5800m 30.00000 -165.00000 5800 meters Facultative Rod-shaped Psychrophile gram- Free living None Deep sea, Marine Motile Piezophile Heterotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia solanacearum BACTERIAL Ralstonia solanacearum UW551, R3B2 UW551, R3B2 Ralstonia solanacearum UW551 Gi01395 Genome incomplete Public Univ of Florida Gabriel DW gabriel@biotech.ufl.edu RRSL Agricultural, Plant Pathogen 342110 15601 001397_GCAT 149574 638341168 NZ_AAKL00000000 Draft 5895 4461 64 Sanger USA Wisconsin from a wilted geranium that had been imported from Kenya USA Wisconsin from a wilted geranium that had been imported from Kenya Aerobe Rod-shaped Mesophile gram- Free living Plant rot, Wilting disease Soil Motile Pathogen Heterotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia BACTERIAL Ralstonia solanacearum 1609 1609 Gi00959 Genome incomplete Public Genoscope Agricultural, Plant Pathogen 305 001399_GCAT 350022 0 0 0 0 France Aerobe Rod-shaped Mesophile gram- Free living Wilting disease, Plant rot Soil Motile Pathogen Heterotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus BACTERIAL Cupriavidus taiwanensis LMG19424 LMG19424 Cupriavidus taiwanensis CCUG 44338, LMG19424 Yes Gc00754 Gi00956 Genome Complete and Published Public Genoscope Masson-Boivin C catherine.masson@toulouse.inra.fr RALTA 2008-03-26 Genome Research 18, 1472-83 Agricultural 164546 15733 001400_GCAT 88067 641522621 NC_010530, NC_010528 Complete 3416 1640 2 1 67.7 France Root nodule of the legume Mimosa pudica in Ping-Tung Taiwan, China China Root nodule of the legume Mimosa pudica in China 22.549506 120.61999 Facultative Rod-shaped Nonsporulating Mesophile gram- Symbiotic Mutualistic Mimosa pudica None Host, Root nodule Motile Nitrogen fixation, Symbiotic Heterotroph Bacteria Proteobacteria Gammaproteobacteria Reinekea Reinekea sp. MED297 BACTERIAL Reinekea sp. MED297 MED297 Reinekea sp. MED297 Gi00879 Genome incomplete Public Kalmar Univ, J. Craig Venter Institute Moore Foundation Pinhassi J http://halia.hik.se/start.jsp?page=members/jarone%20pinhassi MED297 Environmental, Marine Microbial Initiative (MMI) 314283 13534 001401_GCAT 156390 638341169 NZ_AAOE00000000 Draft 4506 4352 52 Sanger USA NW Mediterranean Sea at a depth of 1m NW Mediterranean Sea at a depth of 1m 1 m Mesophile gram- Free living None Marine Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micrococcaceae Renibacterium Renibacterium salmoninarum BACTERIAL Renibacterium salmoninarum ATCC 33209 ATCC 33209 Renibacterium salmoninarum ATCC 33209 DSM 20767, NCMB 2235, IFO 15589, ATCC 33209 Yes Gc00698 Gi00502 Genome Complete and Published Public NCCCWA, Univ of Washington, Integrated Genomics Inc, NWFSC USDA Strom M http://www.nwfsc.noaa.gov/research/divisions/reutd/fhm/ RSal33209 2007-12-18 J Bacteriology 190, 6970-82 Medical, Fish Pathogen 288705 19227 001402_GCAT 12406 641228502 NC_010168 Complete 2.5Kb Phred/Phrap/Consed 9,7x 3558 3605 1 0 56.3 Sanger USA Yearling chinook salmon at a salmon hatchery in Western Oregon USA Yearling chinook salmon at a salmon hatchery in Western Oregon Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Singles Bacterial kidney disease Fresh water, Host 15 Nonmotile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum BACTERIAL Rhizobium leguminosarum bv trifolii WSM1325 WSM1325 trifolii Rhizobium leguminosarum bv. trifolii WSM1325 No Gc01039 Gi01547 Genome Complete and Published Public DOE Joint Genome Institute DOE Reeve WG W.Reeve@murdoch.edu.au Rleg 2009-06-22 Unpublished Agricultural, Biotechnological 395491 20097 001403_GCAT 267555 641736174 NC_012850 Complete Level 6: Finished 2Kb, 8Kb, Fosmid, 454 pTH1522, pMCL200, pcc1Fos Newbler version 1.1.02.15, Phrap 16x Sanger, 20x 454 Prodigal 4767 4565 1 5 61 Sanger, 454-FLX USA Livadi beach, Serifos, Cyclades, Greece John Howieson and Regina Carr, WSM genebank, Centre for Rhizobium Studies, Murdoch University, Perth Western Australia isolated on 0.5 la, 72 hrs, typical trifolii April 1993 Greece 37.147034 24.518901 2m Trifolium sp 3898 pink flowered annual Aerobe Rod-shaped Nonsporulating Mesophile 5-8 gram- Symbiotic Endosymbiotic intracellular Mutualistic Annual clovers Singles None Soil, Root nodule, Host 28 Motile Nitrogen fixation, Non-Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum BACTERIAL Rhizobium leguminosarum WSM2304 WSM2304 trifolii Rhizobium leguminosarum bv. trifolii WSM2304 No Gc00870 Gi01548 Genome Complete and Published Public DOE Joint Genome Institute DOE Reeve WG W.Reeve@murdoch.edu.au Rleg 2008-10-16 Unpublished Agricultural, Biotechnological 395492 20179 001404_GCAT 268431 643348569 NC_011369 Complete Level 6: Finished 2Kb, 8Kb, Fosmid, 454 Newbler version 1.1.02.15, Phrap 11.7x Sanger; 16x 454 Prodigal 4537 6705 1 4 61 Sanger, 454-FLX USA Glencoe Research Station, INIA Uruguay John Howieson and Regina Carr, WSM genebank, Centre for Rhizobium Studies, Murdoch University, Perth Western Australia visible after 72 hrs on 0.5 LA, typical trifolii December 1st, 1998 Uruguay -32.533333 -57 Trifolium polymorphum 361563 perennial clover indigenous to South America, very host specific Aerobe Rod-shaped Nonsporulating Mesophile 5-8 gram- Symbiotic Endosymbiotic intracellular Mutualistic Trifolium polymorphum 361563 Singles None Host, Soil, Root nodule 28 Motile Nitrogen fixation, Non-Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Rhizobium Rhizobium tropici BACTERIAL Rhizobium tropici PRF 81 PRF 81 Rhizobium tropici PRF 81 Gi00505 Genome incomplete Public Embrapa Hungria m hungria@cnpso.embrapa.br Agricultural 363754 13459 001405_GCAT 332399 0 0 0 0 Brazil Aerobe Rod-shaped Nonsporulating Thermotolerant gram- Symbiotic Mutualistic Phaseolus vulgaris Singles None Root nodule, Host Motile Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bradyrhizobiaceae Bradyrhizobium Bradyrhizobium japonicum BACTERIAL Bradyrhizobium japonicum SEMIA 5079 SEMIA 5079 Bradyrhizobium japonicum SEMIA 5079 Gi02461 Genome incomplete Public Embrapa Embrapa labinfo@lncc.br Biotechnological, Commercial inoculant, Agricultural 476282 20963 003183_GCAT 0 0 0 0 Brazil Aerobe Rod-shaped Mesophile gram- Symbiotic Mutualistic None Root nodule, Host 25-30 Motile Nitrogen fixation Photosynthetic Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas pseudoalcaligenes BACTERIAL Pseudomonas pseudoalcaligenes MTCC 5210 MTCC 5210 Pseudomonas pseudoalcaligenes MTCC 5210 Gi02462 Genome incomplete Public Central Leather Research Institute Bioremediation 468557 20259 003184_GCAT 0 0 0 0 India Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Soil Motile Cyanotroph Heterotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Rhizobium BACTERIAL Rhizobium sp. NGR234 (ANU265) NGR234 (ANU265) Rhizobium sp. NGR234 NBRC 101917 Gc00990 Gi00585 Genome Complete and Published Public Goettingen Genomics Laboratory, Univ of Geneva Streit W wolfgang.streit@uni-hamburg.de NGR 2009-04-22 Appl Environ Microbiology 75, 4035-45 Agricultural, Biotechnological 394 21101 001406_GCAT 85924 643692032 NC_012587 Complete Level 6: Finished Glimmer, Critica, Z-curve 3925 3700 1 2 63 Sanger Germany root nodule, Lablab purpureus, from New Guinea New Guinea Lablab purpureus Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Mutualistic Lablab purpureus Singles None Root nodule, Host Motile Stores polyhydroxybutyrate Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Nocardiaceae Rhodococcus BACTERIAL Rhodococcus equi 103S 103S Gi01083 Genome incomplete Public Sanger Institute BBSRC Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical, Animal Pathogen 43767 001407_GCAT 13589 0 4500 0 68 United Kingdom Aerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Filaments Bronchopneumonia Host Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Nocardiaceae Rhodococcus Rhodococcus erythropolis BACTERIAL Rhodococcus erythropolis PR4 PR4 NBRC 100887 Gc00980 Gi00730 Genome Complete and Published Public NITE Fujita N fujita-nobuyuki@nite.go.jp RER 2009-04-01 Unpublished Biotechnological 234621 20395 001408_GCAT 643692033 NC_012490 Complete Level 6: Finished 6516 6104 1 3 62 Japan Pacific Ocean seawater Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Filaments None Marine Nonmotile Magnetite production, Sulfate reducer Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Nocardiaceae Rhodococcus Rhodococcus opacus BACTERIAL Rhodococcus opacus B4 B4 Gc00982 Gi01302 Genome Complete and Published Public NITE Fujita N fujita-nobuyuki@nite.go.jp ROP 2009-04-02 Unpublished Biotechnological 632772 34839 001409_GCAT 98913 643692034 NC_012522 Complete Level 6: Finished 7913 7308 1 5 67 Japan Aerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Filaments None Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Nocardiaceae Rhodococcus Rhodococcus sp. I24 BACTERIAL Rhodococcus sp. I24 I24 Gi00511 Genome incomplete Proprietary Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Biotechnological 91380 001410_GCAT 0 5487 6103 0 USA Aerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Filaments None Nonmotile Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Rhodobacter Rhodobacter capsulatus BACTERIAL Rhodobacter capsulatus SB1003 SB1003 Rhodobacter capsulatus SB1003 Gi00507 Genome incomplete Public Institute of Molecular Genetics, Prague, Integrated Genomics Inc, Univ of Chicago Haselkorn R http://bmb.bsd.uchicago.edu/rHaselkorn.html Biotechnological 272942 55 001411_GCAT 0 3700 2099 0 International Facultative Rod-shaped Nonsporulating Mesophile gram- Free living None 25 - 35 Motile Phototroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Polynucleobacter necessarius BACTERIAL Polynucleobacter necessarius STIR1 STIR1 Polynucleobacter necessarius subsp. necessarius STIR1 Gc00757 Gi01031 Genome Complete and Published Public DOE Joint Genome Institute DOE Hahn M martin.hahn@oceaw.ac.at Pnec 2008-03-28 Unpublished Biotechnological, Ecological 452638 19991 001414_GCAT 263630 641522644 NC_010531 Complete 1560 1589 1 0 45.6 USA Aerobe Rod-shaped Mesophile gram- Free living Euplotes aediculatus None Fresh water, Host, Endosymbiont, Fresh water Nonmotile Heterotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bradyrhizobiaceae Rhodopseudomonas Rhodopseudomonas palustris BACTERIAL Rhodopseudomonas palustris TIE-1 TIE-1 Rhodopseudomonas palustris TIE-1 Gc00824 Gi01561 Genome Complete and Published Public DOE Joint Genome Institute DOE Emerson D demerson@gmu.edu Rpal 2008-06-23 Unpublished Environmental, Bioremediation, Biotechnological 395960 20167 001416_GCAT 266374 642555153 NC_011004 Complete 5744 5377 1 0 64 USA Iron-rich mat from School Street Marsh in Woods Hole MA USA Woods Hole MA 41.526357 -70.668322 Facultative Rod-shaped Mesophile gram- Free living Singles None Soil 25 - 30 Motile Iron oxidizer Photolithoautotroph Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Rhodobacter BACTERIAL Rhodobacter sp. SW2 SW2 Gi01562 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Environmental, Biotechnological, Bioremediation 371731 001417_GCAT 0 0 0 0 USA Anaerobe Mesophile gram- Free living None Soil Iron oxidizer Photolithoautotroph BACTERIAL Rhodospirillum centenum SW SW Rhodospirillum centenum SW ATCC 51521 No Gc00877 Gi00727 Genome Complete and Published Public Arizona State Univ, TGen NSF Blankenship RE Blankenship@asu.edu 2008-10-24 Unpublished Biotechnological 414684 18307 001418_GCAT 326713 643348571 NC_011420 Complete 9.7x 4355 4002 1 0 70 USA derived from ATCC 43720 Facultative Spiral-shaped Mesophile gram- Free living None Fresh water 40 - 42 Motile Lithotroph, Photoheterotroph, Photosynthetic Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia africae BACTERIAL Rickettsia africae ESF-5 ESF-5 Rickettsia africae ESF-5 Gc01112 Gi00810 Genome Complete and Published Public CNRS CNRG Raoult D didier.raoult@medecine.univ-mrs.fr RafrE 2009-04-29 BMC Genomics 10, 166 Human Pathogen, Medical 347255 18269 001419_GCAT 5926 641736162 NC_012633 Complete Level 6: Finished 1278 1156 1 1 32.4 France Cattle tick Amblyomma variegatum collected in Ethiopia Ethiopia Cattle tick Amblyomma variegatum collected in Ethiopia Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic African Tick-Bite Fever Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Legionellales Coxiellaceae Rickettsiella BACTERIAL Rickettsiella grylli Rickettsiella grylli Gi01275 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Rgryl Insect Pathogen, Evolutionary, Biocontrol, Agricultural 59196 16722 001422_GCAT 237975 638341179 NZ_AAQJ00000000 Draft 1561 1457 37 Sanger USA Facultative Rod-shaped Nonsporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Soil, Host Nonmotile Intracellular, Obligate parasite Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia BACTERIAL Rickettsia slovaca 13-B 13-B Rickettsia slovaca Gi00813 Genome incomplete Public CNRS CNRG Raoult D didier.raoult@medecine.univ-mrs.fr Medical, Human Pathogen 35794 15712 001424_GCAT 5934 0 0 0 0 France Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Malaise, Headache Host Nonmotile Non-Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Ramlibacter Ramlibacter tataouinensis BACTERIAL Ramlibacter tataouinensis TTB310 TTB310 Ramlibacter tataouinensis TTB310 LMG 21543, DSM 14655, ATCC BAA-407 Yes Gi01393 Genome incomplete Public CNRS CNRG Raoult D didier.raoult@medecine.univ-mrs.fr Evolutionary 365046 16294 001425_GCAT 7037 0 0 0 69.6 France Subsurface desert soil from Tunisia Tunisia Subsurface desert soil from Tunisia Aerobe Rod-shaped Mesophile gram- Free living None Soil Chemoorganotroph Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia rickettsii BACTERIAL Rickettsia rickettsii Iowa Iowa Rickettsia rickettsii str. Iowa Gc00707 Gi02173 Genome Complete and Published Public RML-NIAID, Integrated Genomics Inc NIH Hackstadt T ted_hackstadt@nih.gov RrIowa 2008-01-17 Infect. Immun. 76, 542-5 Medical, Human Pathogen 452659 19943 002838_GCAT 265325 641522647 NC_010263 Complete 1268 1458 1 0 32 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Rocky Mountain Spotted Fever Host 37 Nonmotile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia rickettsii BACTERIAL Rickettsia rickettsii Sheila Smith Sheila Smith Rickettsia rickettsii str. 'Sheila Smith' Gc00736 Gi01654 Genome Complete and Published Public Univ of Iowa, The Institute for Systems Biology Madan A amadan@systemsbiology.org A 2007-10-02 Unpublished Medical, Human Pathogen 392021 9636 001427_GCAT 640753046 NC_009882 Complete 1257 1417 1 0 32 USA Patient with Rocky Mountain spotted fever Patient with Rocky Mountain spotted fever Homo sapiens Patient with Rocky Mountain spotted fever Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Rocky Mountain Spotted Fever Host 37 Nonmotile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Anaplasmataceae Neorickettsia Neorickettsia risticii BACTERIAL Neorickettsia risticii Illinois Illinois Neorickettsia risticii str. Illinois ATCC VR-986 Yes Gc01067 Gi01957 Genome Complete and Published Public Ohio State Univ, 454 Life Sciences Rikihisa Y rikihisa.1@osu.edu NRI 2009-07-23 Nucleic Acids Res Epub Human Pathogen, Medical 434131 19099 002583_GCAT 0 CP001431 Complete Level 6: Finished 879 0 1 0 0 454 USA horse blood in Maryland. Horse Blood Aerobe Coccus-shaped Mesophile gram- Free living Equine monocytic ehrlichiosis Host Pathogen Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Robiginitalea Robiginitalea biformata BACTERIAL Robiginitalea biformata HTCC2501 HTCC2501 Robiginitalea biformata HTCC2501 ATCC BAA-864, HTCC 2501 Gc01113 Gi00880 Genome Complete and Published Public J. Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm RB2501 2009-09-11 Unpublished Environmental, Marine Microbial Initiative (MMI) 313596 13461 001428_GCAT 98563 638341180 CP001712 Complete Level 6: Finished 3530 3316 1 0 55 Sanger USA Seawater taken at a depth of 10m from the Sargasso Sea Seawater taken at a depth of 10m from the Sargasso Sea 10 meters Aerobe Rod-shaped Mesophile gram- Free living None Marine 30 Nonmotile Chemoheterotroph Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Roseobacter Roseobacter denitrificans BACTERIAL Roseobacter denitrificans Shiba O Ch 114 Shiba O Ch 114 Gi00514 Genome incomplete Proprietary Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Biotechnological, Environmental 375451 001431_GCAT 163757 0 0 0 0 USA Aerobe Rod-shaped Mesophile gram- Free living None Fresh water Motile Phototroph, Photosynthetic Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Roseobacter Roseobacter sp. MED193 BACTERIAL Roseobacter sp. MED193 MED193 Roseobacter sp. MED193 Gi00881 Genome incomplete Public Kalmar Univ, J. Craig Venter Institute Moore Foundation Pinhassi J http://halia.hik.se/start.jsp?page=members/jarone%20pinhassi MED Biotechnological, Environmental, Marine Microbial Initiative (MMI) 314262 13590 001432_GCAT 638341182 NZ_AANB00000000 Draft 4663 4652 58 Sanger USA Northwest Mediterranean Sea at a depth of 1m NW Mediterranean Sea 41.66667 2.8 1 meter Aerobe Rod-shaped Mesophile gram- Free living None Marine Motile Phototroph, Photosynthetic Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Roseovarius Roseovarius sp. HTCC2601 BACTERIAL Roseovarius sp. HTCC2601 HTCC2601 Roseovarius sp. HTCC2601 HTCC2601 Gi00882 Genome incomplete Public J. Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm R Environmental, Marine Microbial Initiative (MMI) 314265 13574 001433_GCAT 166986 639857002 NZ_AATQ00000000 Draft 5425 5573 66 Sanger USA Depth of 10m at the Bermuda Atlantic Time Series station in the Sargasso Sea "Sargasso Sea, Atlantic Ocean, BATS" Surface, 10 m Aerobe Rod-shaped Mesophile gram- Free living None Marine Heterotroph Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Roseovarius Roseovarius sp. 217 BACTERIAL Roseovarius sp. 217 217 Roseovarius sp. 217 Gi00883 Genome incomplete Public Univ of Warwick, J. Craig Venter Institute Moore Foundation Murrell JC http://www.bio.warwick.ac.uk/res/frame.asp?ID=30 ROS Marine Microbial Initiative (MMI), Environmental 314264 13576 001434_GCAT 217 638341184 NZ_AAMV00000000 Draft 4762 4863 61 Sanger USA Coastal seawater, station L4, off the coast of Plymouth, UK United Kingdom "Coastal seawater, station L4, off the coast of Plymouth, England, UK" 50.25 -4.21667 Surface Aerobe Rod-shaped Mesophile gram- Free living None Fresh water, Marine Heterotroph Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Roseovarius Roseovarius nubinhibens BACTERIAL Roseovarius nubinhibens ISM ISM Roseovarius nubinhibens ISM ATCC BAA-591 Yes Gi00884 Genome incomplete Public Univ of Georgia, J. Craig Venter Institute Moore Foundation Moran MA http://alpha.marsci.uga.edu/directory/mmoran.htm ISM Marine Microbial Initiative (MMI), Environmental 89187 13464 001435_GCAT 5655 638341183 NZ_AALY00000000 Draft 3672 3649 65 Sanger USA Surface waters of the Caribbean Sea Caribbean Sea (22?4 N/74?4 W) 22.066667 -74.066667 Surface waters Aerobe Rod-shaped Mesophile gram- Free living None Marine, Surface water Heterotroph Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Ruminococcus Ruminococcus albus BACTERIAL Ruminococcus albus 8 8 Ruminococcus albus 8 Gi00517 Genome incomplete Public NACRB, J. Craig Venter Institute USDA Nelson KE http://www.tigr.org/~kenelson/ Biotechnological 246199 62 001436_GCAT 181586 0 4000 0 0 USA Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living None Host 40 Nonmotile Cellulose degrader Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Ruminococcus Ruminococcus flavefaciens BACTERIAL Ruminococcus flavefaciens FD-1 FD-1 Gi00518 Genome incomplete Public Univ of Illinois at Urbana-Champaign White BA http://www.nutrsci.uiuc.edu/Faculty/bryan.a.white.html Biotechnological 641112 37767 001437_GCAT 239398 0 NZ_ACOK00000000 Draft 29x 119 4576 4339 45 Sanger, 454 USA rumen pill of cattle Cattle Gastrointestinal tract Rumen Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living None Nonmotile Cellulose degrader Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Pseudonocardiaceae Saccharopolyspora Saccharopolyspora erythraea BACTERIAL Saccharopolyspora erythraea NRRL 2338 NRRL 2338 Saccharopolyspora erythraea NRRL 2338 NRRL 2338, ATCC 11635 Yes Gi00714 Genome incomplete Public MWG-Biotech, Istituto Tecnologie Biomediche, Aventis Italian Ministry of Research Biotechnological, Antibiotic production, Erythromycin production 405948 17885 001438_GCAT 0 NZ_ABFV00000000 Draft 241 8079 8007 71 Italy soil, Philippines Phillipines Aerobe Filament-shaped Sporulating Mesophile gram+ Free living None Soil Nonmotile Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Salinibacter BACTERIAL Salinibacter ruber M8 M8 Gi01085 Genome incomplete Public Genoscope Barbe V vbarbe@genoscope.cns.fr Environmental, Biotechnological 146919 001439_GCAT 27936 0 12x 3800 0 0 Sanger France Aerobe Rod-shaped Mesophile Halophile gram- Free living None Fresh water Motile Polymer degrader Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella bongori BACTERIAL Salmonella bongori 12419 12419 Salmonella bongori 12149 ATCC 43975 Yes Gi00530 Genome incomplete Public Sanger Institute, PHLS Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Animal Pathogen, Reptile-specific Pathogen, Medical 218493 351 001444_GCAT 12419 0 Complete 4400 0 1 52 United Kingdom Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica arizonae sv 62:z4,z23 RSK2980 RSK2980 Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- ATCC BAA-731 Gc00685 Gi00531 Genome Complete and Published Public Washington Univ NIH-NIAID Clifton S sclifton@watson.wustl.edu SARI 2007-11-28 Unpublished Animal Pathogen, Reptile Pathogen, Medical, Human Pathogen 41514 13030 001445_GCAT 641228505 NC_010067 Complete 4600 4779 1 0 51 Sanger USA cornsnake in 1986 in Oregon 1986 USA Oregon Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs Salmonellosis, Gastroenteritis, Food poisoning Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica diarizonae sv 61:1,v:1,5,(7) CDC 01-0005 CDC 01-0005 Salmonella enterica subsp. diarizonae ATCC BAA-639 Gi00533 Genome incomplete Public Washington Univ NIH-NIAID Clifton S sclifton@watson.wustl.edu Animal Pathogen, Reptile Pathogen, Medical, Human Pathogen 59204 13031 001446_GCAT 255286 0 3600 0 0 USA Patient in Indiana USA USA Patient in Indiana USA Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Food poisoning, Salmonellosis Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Dublin Dublin Salmonella enterica subsp. enterica serovar Dublin Gi00534 Genome incomplete Public Univ of Illinois at Urbana-Champaign USDA Maloy S http://www.sci.sdsu.edu/~smaloy/ Animal Pathogen, Medical, Human Pathogen, Cattle Pathogen 98360 240 001447_GCAT 74428 0 8000 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Bovine Intestinal microflora, Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica sv Paratyphi B SPB7 SPB7 Paratyphi B Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 Gc00687 Gi00535 Genome Complete and Published Public Washington Univ NIH-NIAID Clifton S sclifton@watson.wustl.edu SPAB 2007-11-30 Unpublished Medical, Human Pathogen 272994 27803 001448_GCAT 641228506 NC_010102 Complete 8x GeneMark v3.3, Glimmer2 4800 5857 1 0 52 Sanger USA Patient in Malaysia in 2002 2002 Malaysia Patient in Malaysia in 2002 Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Paratyphoid fever Host 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Paratyphi C Paratyphi C Gi00814 Genome incomplete Public Univ of Illinois at Urbana-Champaign, Univ of Calgary Liu, S-L http://www.med.ucalgary.ca/webs/bprg/Liu/Liu.html Medical, Human Pathogen 57046 001449_GCAT 253432 0 4800 0 0 Canada Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis, Paratyphoid fever Host 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Paratyphi C RKS4594 RKS4594 Paratyphi C Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594 Gc00964 Gi02487 Genome Complete and Published Public Peking Univ SPC 2009-03-03 PLoS ONE 4, E4510 Medical, Human Pathogen 476213 20993 003212_GCAT 643692035 NC_012125 Complete 4800 4578 1 1 52.8 China Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis, Paratyphoid fever Host 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Pullorum Pullorum Salmonella enterica subsp. enterica serovar Pullorum Gi00536 Genome incomplete Public Univ of Illinois at Urbana-Champaign, Univ of Calgary USDA Maloy S http://www.sci.sdsu.edu/~smaloy/ Medical, Human Pathogen 605 33 001450_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Dysenteria, Food poisoning, Gastroenteritis Host Motile Fowl-adapted, Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Enteritidis LK5 LK5 Enteritidis Salmonella enterica subsp. enterica serovar Enteritidis str. LK5 Gi00538 Genome incomplete Public Univ of Illinois at Urbana-Champaign USDA Maloy S http://www.sci.sdsu.edu/~smaloy/ Medical, Human Pathogen 272989 32 001452_GCAT 0 4500 0 0 USA Chicken Chicken Chicken Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica PT4 P125109 PT4 P125109 Enteritidis Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 NCTC 13349 Gc00833 Gi00539 Genome Complete and Published Public Sanger Institute Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ 2008-06-26 Genome Research 18, 1624-37 Medical, Human Pathogen 550537 30687 001453_GCAT 643348572 NC_011294 Complete 9x 4685 4318 1 0 52.2 United Kingdom Outbreak of human food-poisoning in the UK which was traced back to a poultry farm. Outbreak of human food-poisoning in the UK which was traced back to a poultry farm. Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Enteritidis PT8 PT8 Enteritidis Gi00815 Genome incomplete Public Univ of Illinois at Urbana-Champaign, Univ of Calgary Liu, S-L http://www.med.ucalgary.ca/webs/bprg/Liu/Liu.html Medical, Human Pathogen 149539 001454_GCAT 238467 0 0 0 0 International Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Gallinarum 287/91 287/91 Gallinarum Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 NCTC 13346 Gc00832 Gi00540 Genome Complete and Published Public Sanger Institute, PHLS Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ 2008-06-26 Genome Research 18, 1624-37 Medical, Human Pathogen 550538 30689 001455_GCAT 643348573 NC_011274 Complete 9x 4658 3965 1 0 52.2 United Kingdom "outbreak of fowl typhoid in brownegg laying hens by Prof. A. Berchieri, University of Sao Paulo, Jaboticabal, Brazil" Brazil outbreak of fowl typhoid in brownegg laying hens by Prof. A. Berchieri, University of Sao Paulo, Jaboticabal, Brazil Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica sv Paratyphi A AKU_12601 AKU_12601 Paratyphi A Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601 Gc00853 Gi00541 Genome Complete and Published Public Sanger Institute, Imperial College Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ SSPA 2008-08-18 BMC Genomics 10(1):36 Medical, Human Pathogen 554290 30943 001456_GCAT 315234 642555158 NC_011147 Complete 4581 4209 1 1 52.2 United Kingdom clinical isolate from a child with paratyphoid fever in Karachi, Pakistan, 2004 2004 Pakistan Karachi, Pakistan 24.893379 67.028061 Homo sapiens Child Patient with paratyphoid fever Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Typhoid fever, Food poisoning, Gastroenteritis, Salmonellosis Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella typhimurium BACTERIAL Salmonella enterica Typhimurium DT104 DT104 Typhimurium Salmonella typhimurium DT104 NCTC 13348 Gi00543 Genome incomplete Public Sanger Institute Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Animal Pathogen, Medical, Human Pathogen, Cattle Pathogen 85569 232 001457_GCAT 0 Complete 5000 0 0 United Kingdom United Kingdom in 1998 1998 UK United Kingdom in 1998 Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella BACTERIAL Salmonella enterica Typhimurium DT2 DT2 Typhimurium Gi01230 Genome incomplete Public Institute for Animal Health, Sanger Institute Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Animal Pathogen, Medical, Human Pathogen, Cattle Pathogen 602 001458_GCAT 138268 0 4917 0 0 United Kingdom Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Infantis Infantis Gi01231 Genome incomplete Public Institute for Animal Health, Sanger Institute Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical, Human Pathogen 595 001459_GCAT 0 0 0 0 United Kingdom Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Hadar Hadar Gi01232 Genome incomplete Public Sanger Institute, Institute for Animal Health Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical, Human Pathogen 149385 001460_GCAT 0 0 0 0 United Kingdom Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella typhimurium BACTERIAL Salmonella enterica Typhimurium SL1344 SL1344 Typhimurium Salmonella typhimurium SL1344 NCTC 13347 Gi00544 Genome incomplete Public Sanger Institute, Institute for Animal Health, Univ of Cambridge, PHLS, Univ of Glasgow Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical, Human Pathogen 216597 345 001461_GCAT 0 Complete 5000 0 1 0 United Kingdom Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella BACTERIAL Salmonella enterica Typhimurium D23580 D23580 Typhimurium Gi01682 Genome incomplete Public Sanger Institute, Institute for Animal Health Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical, Human Pathogen 602 001462_GCAT 138268 0 5466 0 0 United Kingdom Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Agona SL483 SL483 Agona Salmonella enterica subsp. enterica serovar Agona str. SL483 Gc00850 Gi01620 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Ravel J SeAg 2008-08-22 Unpublished Medical, Human Pathogen 454166 20063 001463_GCAT 259042 642555154 NC_011149 Complete 4798 4720 1 1 52 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs Salmonellosis, Food poisoning, Gastroenteritis Soil, Fresh water, Food, Host Motile Nontyphoidal Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica sv Dublin CT_02021853 CT_02021853 Dublin Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Gc00856 Gi01621 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Ravel J SeD 2008-09-05 Unpublished Medical, Human Pathogen 439851 19467 001464_GCAT 355218 642555155 NZ_ABAP00000000 Complete 33-39Kb, 4-6Kb 4842 4721 1 1 52 USA bovine-adapted serovar bovine-adapted serovar Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Soil, Fresh water, Food, Host Motile Nontyphoidal Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Hadar RI_05P066 RI_05P066 Hadar Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066 Gi01622 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Ravel J Salmentericaenterica Medical, Human Pathogen 465516 20593 001465_GCAT 338978 641736208 NZ_ABFG00000000 Draft 4793 5600 52 Sanger USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs Salmonellosis, Food poisoning, Gastroenteritis Soil, Fresh water, Food, Host Motile Nontyphoidal Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica sv Heidelberg SL476, CVM30485 SL476, CVM30485 Heidelberg Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 Gc00839 Gi01623 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Ravel J SeHA 2008-07-25 Unpublished Human Pathogen, Medical 454169 20045 001466_GCAT 270887 642555156 NC_011083 Complete 488 4884 1 2 52 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Soil, Fresh water, Food, Host Motile Nontyphoidal Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Heidelberg SL486, CVM30485 SL486, CVM30485 Heidelberg Salmonella enterica subsp. enterica serovar Heidelberg str. SL486 Gi01624 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Senterienterica Medical, Human Pathogen 454164 20065 001467_GCAT 641736105 NZ_ABEL00000000 Draft 4700 5435 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Soil, Fresh water, Food, Host Motile Nontyphoidal Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica I CVM23701, S4,[5],12:i: CVM23701, S4,[5],12:i: I 4,[5],12:i: Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701 Gi01625 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Sententer Medical, Human Pathogen 440534 19465 001468_GCAT 641736231 NZ_ABAO00000000 Draft 4900 5686 52.3 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Soil, Fresh water, Food, Host Motile Nontyphoidal Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Javiana GA_MM04042433 GA_MM04042433 Javiana Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433 Gi01626 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Sententeric Medical, Human Pathogen 454167 20049 001469_GCAT 322309 641736102 NZ_ABEH00000000 Draft 4600 5175 0 Sanger USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Soil, Fresh water, Food, Host Motile Nontyphoidal Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Kentucky CDC 191 CDC 191 Kentucky Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191 Gi01627 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Ravel J Sententerica Medical, Human Pathogen 454231 20069 001470_GCAT 641736103 NZ_ABEI00000000 Draft 4696 5295 52 Sanger USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Soil, Fresh water, Food, Host Motile Nontyphoidal Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Kentucky CVM29188 CVM29188 Kentucky Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188 Gi01628 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Sente Medical, Human Pathogen 439842 19457 001471_GCAT 329911 641736234 NZ_ABAK00000000 Draft 5000 5665 51.9 Sanger USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Soil, Fresh water, Food, Host Motile Nontyphoidal Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Newport SL254 SL254 Newport Salmonella enterica subsp. enterica serovar Newport str. SL254 Gc00838 Gi01629 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Ravel J SNSL254 2008-07-25 Unpublished Medical, Human Pathogen 423368 18747 001472_GCAT 330633 642555157 NC_011080 Complete 4827 4913 1 2 52 USA MDR strain from one of two distinct lineages of the Newport serovar MDR strain from one of two distinct lineages of the Newport serovar Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Soil, Fresh water, Food, Host Motile Nontyphoidal Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Newport SL317 SL317 Newport Salmonella enterica subsp. enterica serovar Newport str. SL317 Gi01630 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Saentericaenterica Medical, Human Pathogen 108619 20047 001473_GCAT 641736111 NZ_ABEW00000000 Draft 4900 5776 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Soil, Fresh water, Food, Host Motile Nontyphoidal Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Saint Paul SARA23 SARA23 Saint Paul Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23 Gi01631 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Sentent Medical, Human Pathogen 439846 19461 001474_GCAT 309759 641736233 NZ_ABAM00000000 Draft 4800 5494 52.4 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Soil, Fresh water, Food, Host Motile Nontyphoidal Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Saint Paul SARA29 SARA29 Saint Paul Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29 Gi01632 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Sentente Medical, Human Pathogen 439847 19463 001475_GCAT 641736230 NZ_ABAN00000000 Draft 4900 5729 52.2 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Soil, Fresh water, Food, Host Motile Nontyphoidal Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Schwarzengrund CVM19633 CVM19633 Schwarzengrund Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 Gc00842 Gi01633 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Ravel J SeSA 2008-07-30 Unpublished Medical, Human Pathogen 439843 19459 001476_GCAT 348963 642555159 NC_011094 Complete 33-39 kb, 4-6 kb 4709 4730 1 2 52.9 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs Salmonellosis, Food poisoning, Gastroenteritis Soil, Fresh water, Food, Host Motile Nontyphoidal Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Schwarzengrund SL486 SL480 (DBS_GA_F25499) SL486 SL480 (DBS_GA_F25499) Schwarzengrund Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480 Gi01634 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Senteenterica Medical, Human Pathogen 340190 20071 001477_GCAT 641736100 NZ_ABEJ00000000 Draft 4800 5431 0 Sanger USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Soil, Fresh water, Food, Host Motile Nontyphoidal Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Virchow SL491 SL491 Virchow Salmonella enterica subsp. enterica serovar Virchow str. SL491 Gi01635 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Ravel J Salmoentericaenterica Medical, Human Pathogen 465517 20595 001478_GCAT 641736185 NZ_ABFH00000000 Draft 4858 5695 52 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs Salmonellosis, Monoarthritis, Bacteremia, Food poisoning, Cholecystitis, Gastroenteritis Soil, Fresh water, Food, Host Motile Nontyphoidal Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Weltevreden HI_N05-537 SL484 HI_N05-537 SL484 Weltevreden Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537 Gi01636 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Ravel J Salentericaenterica Medical, Human Pathogen 465518 20591 001479_GCAT 641736209 NZ_ABFF00000000 Draft 5047 5760 52 Sanger USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs Salmonellosis, Food poisoning, Foodborne nontyphoidal salmonellosis, Gastroenteritis Soil, Fresh water, Food, Host Motile Nontyphoidal Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella typhimurium BACTERIAL Salmonella enterica Typhimurium TR7095 TR7095 Typhimurium Salmonella typhimurium TR7095 Gi00545 Genome incomplete Public Washington Univ, J. Craig Venter Institute WASHU webmaster@genome.wustl.edu Medical, Human Pathogen 178328 280 001480_GCAT 0 4500 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Soil, Fresh water, Food, Host Motile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Serratia Serratia marcescens BACTERIAL Serratia marcescens Db11 Db11 Serratia marcescens subsp. marcescens Db11 Gi00549 Genome incomplete Public Sanger Institute, CIML Wellcome Trust, CNRS Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical, Human Pathogen 273526 406 001481_GCAT 0 Complete 4600 0 59 United Kingdom Intestinal tract Facultative Rod-shaped Mesophile gram- Free living Urinary infection, Nosocomial infection, Respiratory infection Intestinal microflora 37 Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella baltica BACTERIAL Shewanella baltica OS223 OS223 Shewanella baltica OS223 Gc00902 Gi02027 Genome Complete and Published Public DOE Joint Genome Institute DOE Tiedje J tiedjej@msu.edu Sbal 2008-12-15 Unpublished Biotechnological 407976 17985 002656_GCAT 236081 643348574 NC_011663 Complete 5145 4422 1 3 46.3 Sanger USA Sea water, oxic-anoxic interface, 120m depth from the Baltic Sea Baltic Sea 120 meters Facultative Rod-shaped Nonsporulating Psychrotolerant gram- Free living Pairs, Singles None Marine 4 Motile Heterotroph Bacteria Chloroflexi Chloroflexi (class) Chloroflexales Oscillochloridaceae BACTERIAL Oscillochloris sp. UdG9002 UdG9002 Gi02028 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 104175 002657_GCAT 0 0 0 0 USA Anaerobe Rod-shaped Mesophile Free living None Fresh water Phototroph Bacteria Firmicutes Clostridia Natranaerobiales Natranaerobiaceae Natranaerobius Natranaerobius thermophilus BACTERIAL Natranaerobius thermophilus JW/NM-WN-LF JW/NM-WN-LF Natranaerobius thermophilus JW/NM-WN-LF DSM 18059, ATCC BAA-1301 Yes Gc00772 Gi02029 Genome Complete and Published Public DOE Joint Genome Institute DOE Wiegel J jwiegel@uga.edu Nther 2008-04-09 Unpublished Biotechnological 457570 20207 002658_GCAT 261070 642555142 NC_010718 Complete 3165 3018 1 2 36.2 USA "Soda lakes of the Wadi An Natrun, Egypt" June, 2005 Egypt Wadi An Natrun, Egypt 30.325278 30.407222 Anaerobe Rod-shaped Nonsporulating Thermophile Halophile gram+ Free living None Fresh water Nonmotile Alkaliphile Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio desulfuricans BACTERIAL Desulfovibrio desulfuricans desulfuricans 27774 27774 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 ATCC 27774, DSM 6969 No Gc00931 Gi02266 Genome Complete and Published Public DOE Joint Genome Institute DOE Hazen TC TCHazen@lbl.gov Ddes 2009-01-09 Unpublished Bioremediation, Environmental, Biotechnological 525146 29493 002982_GCAT 643348538 NC_011883 Complete 2873 2356 1 0 58 USA Rumen of a sheep Rumen of a sheep Sheep Gastrointestinal tract Rumen Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Fresh water, Rumen 37 Motile Sulfate reducer Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio vulgaris BACTERIAL Desulfovibrio vulgaris Miyazaki F Miyazaki F Desulfovibrio vulgaris str. 'Miyazaki F' Gc00916 Gi02267 Genome Complete and Published Public DOE Joint Genome Institute DOE Hazen TC TCHazen@lbl.gov DvMF 2008-12-24 Unpublished Bioremediation, Environmental, Biotechnological 883 27731 002983_GCAT 643348539 NC_011769 Complete 4040 3180 1 0 67 USA Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Soil, Fresh water, Salt marsh Motile Sulfate reducer Bacteria bacterium S5 BACTERIAL Selenospirillum indicus S5 S5 bacterium S5 Gi02042 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bioremediation, Environmental, Biotechnological 653733 38575 002689_GCAT 0 DNA Received 0 0 0 USA Anaerobe Mesophile Free living None Fresh water Selenate reducer Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Pseudonocardiaceae Pseudonocardia Pseudonocardia dioxanivorans BACTERIAL Pseudonocardia dioxanivorans CB1190T CB1190T ATCC 55486T, DSM 44775T Yes Gi02043 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Antibiotic production, Environmental, Biotechnological, Bioremediation 675635 40557 002691_GCAT 91804 0 0 0 74 USA "Industrial sludge contaminated with 1,4-dioxane" Industrial sludge contaminated with 1,4-dioxane Mesophile gram+ Free living None Fresh water, Sludge Grows on ethers, Nitrogen fixation Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Pseudonocardiaceae Pseudonocardia BACTERIAL Pseudonocardia sp #1 #1 Gi02343 Genome incomplete Public Univ of Wisconsin-Madison NSF Currie C currie@bact.wisc.edu Biotechnological, Antibiotic production 60912 003065_GCAT 0 0 0 0 USA Mesophile gram+ Symbiotic Ants None Host Symbiotic Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Pseudonocardiaceae Pseudonocardia BACTERIAL Pseudonocardia sp #2 #2 Gi02344 Genome incomplete Public Univ of Wisconsin-Madison NSF Currie C currie@bact.wisc.edu Biotechnological, Antibiotic production 60912 003066_GCAT 0 0 0 0 USA Mesophile gram+ Symbiotic Ants None Host Symbiotic Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Pseudonocardiaceae Pseudonocardia BACTERIAL Pseudonocardia sp #3 #3 Gi02345 Genome incomplete Public Univ of Wisconsin-Madison NSF Currie C currie@bact.wisc.edu Biotechnological, Antibiotic production 60912 003067_GCAT 0 0 0 0 USA Mesophile gram+ Symbiotic Ants None Host Symbiotic Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Pseudonocardiaceae Pseudonocardia BACTERIAL Pseudonocardia saturnea Gi02346 Genome incomplete Public Univ of Wisconsin-Madison NSF Currie C currie@bact.wisc.edu Antibiotic production, Biotechnological 33909 003068_GCAT 233762 0 0 0 0 USA Mesophile gram+ Symbiotic Ants None Host Symbiotic Archaea Euryarchaeota Methanococci Methanococcales Methanococcaceae Methanothermococcus ARCHAEAL Methanothermococcus okinawensis IH1T IH1T JCM 11175T, DSM 14208T Yes Gi02044 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 155863 002692_GCAT 48249 0 0 0 33.5 USA Deep-sea hydrothermal vent chimney at the Iheya Ridge in the Okinawa Trough Japan Japan Deep-sea hydrothermal vent chimney at the Iheya Ridge in the Okinawa Trough Japan Anaerobe Coccus-shaped Thermophile 4.5 - 8.5 gram- Free living None Deep sea, Hydrothermal vent, Fresh water 40 - 75 Motile Methanogen Autotroph, Lithotroph Archaea Euryarchaeota Methanococci Methanococcales Methanocaldococcaceae Methanotorris ARCHAEAL Methanotorris igneus Kol5 Kol5 DSM 5666 Yes Gi02045 Genome incomplete Public DOE Joint Genome Institute DOE Whitman WB whitman@arches.uga.edu Biotechnological 2189 002693_GCAT 25 0 0 0 31 USA Shallow submarine vent system at the Kolbeinsey ridge Iceland Iceland Shallow submarine vent system at the Kolbeinsey ridge Iceland 66.780217 -18.480835 Anaerobe Coccus-shaped Hyperthermophile 6.5 gram- Free living None Marine, Submarine 85 Methanogen Lithotroph, Chemolithoautotroph Archaea Euryarchaeota Methanococci Methanococcales Methanocaldococcaceae Methanotorris ARCHAEAL Methanotorris formicicus Mc-S-70 Mc-S-70 ATCC BAA-687T, JCM 11930T Gi02046 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 213185 002694_GCAT 135915 0 0 0 33.3 USA Black smoker chimney at the Kairei field in the Central Indian Ridge Iceland Black smoker chimney at the Kairei field in the Central Indian Ridge Anaerobe Coccus-shaped Thermophile 6 - 8.5 gram- Free living None 55 - 83 Methanogen Autotroph, Lithotroph Archaea Euryarchaeota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus fervens ARCHAEAL Methanocaldococcus fervens AG86 AG86 Methanocaldococcus fervens AG86 DSM 4213 Yes Gc01098 Gi02047 Genome Complete and Published Public DOE Joint Genome Institute DOE Whitman WB whitman@uga.edu Mefer 2009-08-28 Unpublished Biotechnological 573064 32615 002695_GCAT 16 0 NC_013156 Complete Level 6: Finished Prodigal:1.4, GenePRIMP 1485 1630 1 1 31 USA Deep-sea hydrothermal chimney sample collected on the East Pacific Rise at a depth of 2600m Mexico 10319479 Guayamas Basin, Gulf of California 28.083612 -111.408692 2600m Anaerobe Coccus-shaped Nonsporulating Thermophile 6.5 gram- Free living None Deep sea, Marine 49 - 89 Motile Piezophile, Methanogen Autotroph, Lithotroph Archaea Euryarchaeota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus infernus ARCHAEAL Methanocaldococcus infernus ME ME Methanocaldococcus infernus ME DSM 11812 Yes Gi02048 Genome incomplete Public DOE Joint Genome Institute DOE Whitman WB whitman@uga.edu Biotechnological 573063 32611 002696_GCAT 20 0 NZ_ACQY00000000 Draft 54 1309 1536 33 USA Deep-sea hydrothermal chimney sample collected on the Mid-Atlantic Ridge at a depth of 3000m Deep-sea hydrothermal chimney sample collected on the Mid-Atlantic Ridge at a depth of 3000m 3000m Anaerobe Coccus-shaped Nonsporulating Thermophile 6.5 gram- Free living None Deep sea, Marine 55 - 91 Motile Methanogen Lithotroph, Autotroph Archaea Euryarchaeota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus vulcanius ARCHAEAL Methanocaldococcus vulcanius M7, DSM 12094 M7, DSM 12094 Methanocaldococcus vulcanius M7 DSM 12094, ATCC 700851 Yes Gi02049 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 579137 33047 002697_GCAT 17 0 NZ_ACUW00000000 Draft 6 1741 1814 31 USA Deep-sea hydrothermal chimney sample collected on the East Pacific Rise at a depth of 2600m Deep-sea hydrothermal chimney sample collected on the East Pacific Rise at a depth of 2600m 2600 meters Anaerobe Coccus-shaped Nonsporulating Thermophile 6.5 gram- Free living None Marine, Deep sea 49 - 89 Motile Piezophile Autotroph Archaea Euryarchaeota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus sp. FS406-22 ARCHAEAL Methanocaldococcus sp FS406-22 FS406-22 Gi02050 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Ecological, Biotechnological 644281 37943 002698_GCAT 179917 0 0 0 0 USA Deep-sea hydrothermal vent from Pacific Ocean Axial volcano on the Juan de Fuca Ridge Deep-sea hydrothermal vent from Pacific Ocean Axial volcano on the Juan de Fuca Ridge 23.366667 -44.933333 Coccus-shaped Nonsporulating Thermophile gram- Free living None Marine, Hydrothermal vent, Deep sea 90 Motile Piezophile, Nitrogen fixation, Methanogen Lithotroph Bacteria Proteobacteria Alphaproteobacteria Caulobacterales Caulobacteraceae Asticcacaulis BACTERIAL Asticcacaulis biprosthecium Gi02051 Genome incomplete Public Indiana Univ NSF Brun Y ybrun@indiana.edu 76891 002699_GCAT 25580 0 Draft 15.6x 0 0 0 454-FLX USA Mesophile gram- Free living None Fresh water Bacteria Proteobacteria Alphaproteobacteria Caulobacterales Caulobacteraceae Asticcacaulis Asticcacaulis excentricus BACTERIAL Asticcacaulis excentricus CB 48 CB 48 Asticcacaulis excentricus CB 48 Gi02052 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 573065 32595 002700_GCAT 24445 0 NZ_ACQR00000000 Draft 83 4240 3839 59 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Fresh water Motile Bacteria Proteobacteria Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas subvibrioides BACTERIAL Brevundimonas subvibrioides ATCC 15264 ATCC 15264 ATCC 15264, DSM 4735, LMG 14903 Yes Gi02053 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 633149 36643 002701_GCAT 5627 0 0 0 0 USA Aerobe Rod-shaped Mesophile gram- Free living None Fresh water Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae Ancalomicrobium BACTERIAL Ancalomicrobium adetum Gi02054 Genome incomplete Public Indiana Univ NSF Brun Y ybrun@indiana.edu 213680 002702_GCAT 87497 0 0 0 0 USA Aerobe Mesophile gram- Free living None Fresh water Chemoorganotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae Hyphomicrobium Hyphomicrobium denitrificans BACTERIAL Hyphomicrobium denitrificans ATCC 51888 ATCC 51888 Hyphomicrobium denitrificans ATCC 51888 ATCC 51888 Gi02055 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 582899 33261 002703_GCAT 4619 0 NZ_ACVL00000000 Draft 36 3584 3542 60 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Fresh water Motile Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae Rhodomicrobium Rhodomicrobium vannielii BACTERIAL Rhodomicrobium vannielii ATCC 17100 ATCC 17100 NCIMB 10020, ATCC 17100 Yes Gi02056 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 648757 38253 002704_GCAT 4645 0 In progress 0 0 0 USA Mesophile gram- Free living None Photoheterotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Diaphorobacter Diaphorobacter sp. TPSY BACTERIAL Diaphorobacter sp TPSY TPSY Diaphorobacter sp. TPSY Gc00950 Gi02057 Genome Complete and Published Public DOE Joint Genome Institute DOE Coates JD jcoates@nature.berkeley.edu Dtpsy 2009-01-27 Unpublished Environmental, Biotechnological 535289 29975 002705_GCAT 643348541 NC_011992 Complete 3796 3479 1 0 66 USA Facultative Rod-shaped Mesophile gram- Free living None Fresh water Motile Uranium oxidizer, Iron oxidizer Bacteria Proteobacteria Betaproteobacteria BACTERIAL Ferrutens nitratireducens ATCC BAA-1479 ATCC BAA-1479 ATCC BAA-1479 Gi02058 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Bioremediation 206351 002706_GCAT 0 0 0 63.8 USA Anaerobe Mesophile 7.25 gram- Free living None Soil 37 Iron oxidizer Autotroph Bacteria Proteobacteria Betaproteobacteria Rhodocyclales Rhodocyclaceae Azospira Azospira oryzae BACTERIAL Azospira suillum PS PS Gi02059 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 640081 37693 002707_GCAT 0 0 0 0 USA Mesophile gram- Free living None Diazotroph Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Natrialba Natrialba magadii ARCHAEAL Natrialba magadii ATCC 43099 ATCC 43099 Natrialba magadii ATCC 43099 NCIMB 2190, DSM 3394, ATCC 43099 Yes Gi02060 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 547559 30691 002708_GCAT 643886072 NZ_ACIT00000000 Draft 13 4436 4407 61.1 USA Lake Magadi in Kenya ATCC 43099 Lake Magadi in Kenya "-189,635" "36,273,931" Aerobe Rod-shaped Nonsporulating Mesophile Halophile gram- Free living None Fresh water Motile Alkaliphile Bacteria Aquificae Aquificae (class) Aquificales Desulfurobacteriaceae Thermovibrio BACTERIAL Thermovibrio ammonificans HB-1T DSM 15698 HB-1T DSM 15698 DSM 15698T, JCM 12110T Yes Gi02061 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 228745 002709_GCAT 83837 0 0 0 54.6 USA Walls of an active deep-sea hydrothermal vent chimney on the East Pacific Rise at 9 degrees 50'N Walls of an active deep-sea hydrothermal vent chimney on the East Pacific Rise at 9 degrees 50'N Anaerobe Rod-shaped Thermophile 5 - 7 gram- Free living None Hydrothermal vent, Fresh water, Deep sea, Marine 60 - 80 Motile Chemolithoautotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax paradoxus BACTERIAL Variovorax paradoxus S110 S110 Variovorax paradoxus S110 Gc01030 Gi02062 Genome Complete and Published Public DOE Joint Genome Institute DOE Han JI jihan@rpi.edu 2009-06-11 Unpublished Agricultural 543728 30453 002710_GCAT 643886204 NC_012792, NC_012791 Complete Level 6: Finished 6754 6453 2 0 67 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Soil Motile Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Variovorax BACTERIAL Variovorax paradoxus EPS EPS Gi02063 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 34073 002711_GCAT 142409 0 0 0 0 USA Mesophile gram- Free living None Host Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinosynnemataceae Actinosynnema Actinosynnema mirum BACTERIAL Actinosynnema mirum 101, DSM 43827 101, DSM 43827 Actinosynnema mirum DSM 43827 NBRC 14064, DSM 43827, ATCC 29888 Yes Gc01024 Gi02064 Genome Complete and Published Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org 2009-06-09 SIGS 1(1), 46-53 Antibiotic production, Tree of Life, GEBA, Biotechnological 446462 19705 002712_GCAT 643886170 NZ_ABTA00000000 Complete Level 6: Finished 8Kb, fosmid pMCL200, pcc1Fos Newbler version 1.1.02.15, Phrap 8.9x Sanger; 20x pyrosequence Prodigal 8248 7177 1 0 73.7 454-FLX, Illumina, Sanger USA "Blade of grass from Raritan River NJ, USA" September 1976 USA NJ USA 40.491816 -74.322087 Aerobe Sporulating Mesophile gram+ Free living None Soil 10-30 Nonmotile Nocardicin A producer Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Nocardiopsaceae Nocardiopsis Nocardiopsis dassonvillei BACTERIAL Nocardiopsis dassonvillei dassonvillei DSM 43111 DSM 43111 Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 IMRU 509, IMET 9605, DSM 43111, JCM 7437, IAM 14287, NCTC 10488, ATCC 23218 Yes Gi02065 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org GEBA, Tree of Life, Medical, Human Pathogen 446468 19709 002713_GCAT 643886081 NZ_ABUI00000000 Draft GeneMark 63 6530 5706 72.7 Sanger, 454 USA Homo sapiens Blood Aerobe Mesophile gram+ Free living Pulmonary infection, Actinomycetoma Host, Blood 28 Pathogen, Lacks Mycolic acids Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Dermabacteraceae Brachybacterium Brachybacterium faecium BACTERIAL Brachybacterium faecium 6-10, DSM 4810 6-10, DSM 4810 Brachybacterium faecium DSM 4810 NCIB 9860, DSM 4810, IMET 11352, ATCC 43885 Yes Gc01028 Gi02066 Genome Complete and Published Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org 2009-06-09 SIGS 1(1), 3-11 GEBA, Tree of Life 446465 17026 002714_GCAT 12526 0 NZ_ABTF00000000 Complete Level 6: Finished 8Kb, Fosmid pMCL200 Newbler 1.1.02.15, PGA 10x Sanger; 40x 454 Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 3614 3198 1 0 72 Illumina, 454-FLX, Sanger USA Poultry deep litter 1966 Poultry deep litter Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Soil 25-30 Sugars fermentor Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Cellulomonadaceae Cellulomonas Cellulomonas flavigena BACTERIAL Cellulomonas flavigena 134, DSM 20109 134, DSM 20109 Cellulomonas flavigena DSM 20109 NCIB 8073, ATCC 482, DSM 20109, CCM 1926 Yes Gi02067 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Bioenergy, Biofuels, Tree of Life, Energy production, GEBA, Biotechnological 446466 19707 002715_GCAT 643886083 NZ_ABTJ00000000 Draft GeneMark 237 3977 3807 74 Sanger, 454 USA Facultative Rod-shaped Nonsporulating Mesophile 0.9 - 3.3 um gram+ Free living None Soil 30 Motile Cellulose degrader, Nitrate reducer, Xylan degrader, Biomass degrader Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Glycomycetaceae Stackebrandtia Stackebrandtia nassauensis BACTERIAL Stackebrandtia nassauensis LLR-40K-21, DSM 44728 LLR-40K-21, DSM 44728 Stackebrandtia nassauensis DSM 44728 DSM 44728 Yes Gc01107 Gi02068 Genome Complete and Published Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org 2009-09-10 Unpublished GEBA, Tree of Life 446470 19713 002716_GCAT 0 NZ_ABUS00000000 Complete Level 6: Finished 8 Kb, Fosmid, 454 81931 Sanger, 851638 pyrosequence pMCL200, pcc1Fos Newbler version 1.1.02.15, Phrap 11x Sanger; 29x 454 Prodigal 1.4, GenePRIMP 6841 6473 1 0 68.1 454-FLX, Sanger USA Soil sample from Nassau Bahamas Bahamas Soil sample from Nassau Bahamas 25.066127 -77.339025 Aerobe Nonsporulating Mesophile 0.5 um Yellow gram+ Free living None Soil 28 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Promicromonosporaceae Xylanimonas Xylanimonas cellulosilytica BACTERIAL Xylanimonas cellulosilytica XIL07, DSM 15894 XIL07, DSM 15894 Xylanimonas cellulosilytica DSM 15894 DSM 15894, LMG 20990, CECT 5975 Yes Gi02069 Genome complete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 446471 19715 002717_GCAT 62747 643886106 NZ_ABVC00000000 Complete Level 6: Finished Prodigal 3831 3546 1 1 72.4 454, Sanger USA Decaying tree in Salamanca Spain Spain Decaying tree in Salamanca Spain 40.964972 -5.663047 Aerobe Coccus-shaped Nonsporulating Mesophile 0.8 um 1.1 um gram+ Free living None Soil 28 Nonmotile Xylan degrader, Lacks Mycolic acids, Cellulose degrader Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Sanguibacteraceae Sanguibacter Sanguibacter keddieii BACTERIAL Sanguibacter keddieii ST-74, DSM 10542 ST-74, DSM 10542 Sanguibacter keddieii DSM 10542 CECT 4540, ATCC 51767, NCFB 3025, DSM 10542 Yes Gc01087 Gi02151 Genome Complete and Published Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org 2009-08-30 SIGS in press Tree of Life, GEBA 446469 19711 002802_GCAT 0 Complete Level 6: Finished 8 Kb, 454 pMCL200, pcc1Fos Newbler version 1.1.02.15, Phrap 10.4x Sanger; 20x 454 GeneMark 4.6b 4253 3805 1 0 72 Sanger, 454 USA Blood of dairy cows before 1995 Spain Bovine blood Cow Healthy Blood Facultative Rod-shaped Nonsporulating Mesophile Yellow gram+ Free living None Host 25-30 Motile Bacteria Synergistetes Synetgistia Synergistales Synergistaceae Dethiosulfovibrio Dethiosulfovibrio peptidovorans BACTERIAL Dethiosulfovibrio peptidovorans SEBR 4207, DSM 11002 SEBR 4207, DSM 11002 Dethiosulfovibrio peptidovorans DSM 11002 DSM 11002 Yes Gi02152 Genome Permanent Draft Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 469381 20741 002804_GCAT 643886134 NZ_ABTR00000000 Complete Level 2: High-Quality Draft GeneMark 29 2525 2579 54.4 454, Sanger USA Corroding offshore oil well in Congo Congo 9226912 Corroding offshore oil well in Congo Obligate anaerobe Vibrio-shaped Nonsporulating Mesophile Halophile 7 1 um 3 - 5 um gram- Free living Singles None Oil fields 42 Motile Thiosulfate reducer Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Halogeometricum Halogeometricum borinquense ARCHAEAL Halogeometricum borinquense PR3, DSM 11551 PR3, DSM 11551 Halogeometricum borinquense DSM 11551 ATCC 700274, DSM 11551, JCM 10706 Yes Gc01108 Gi02153 Genome Complete and Published Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org 2009-09-10 Unpublished GEBA, Tree of Life 469382 20743 002805_GCAT 643886124 NZ_ABTX00000000 Complete Level 6: Finished 8Kb, Fosmid 2826 Sanger pMCL200 Newbler, PGA 9.7x Sanger; 21.8x 454 GeneMark, GenePRIMP 3920 4059 1 5 60 Sanger, 454 USA Solar salterns of Cabo Rojo Puerto Rico Puerto Rico Cabo Rojo Puerto Rico 18.088189 -67.147095 Aerobe Pleomorphic-shaped Nonsporulating Mesophile Halophile gram- Free living Singles None Solar saltern 40 Motile Bacteria Actinobacteria Actinobacteria (class) Solirubrobacterales Conexibacteraceae Conexibacter Conexibacter woesei BACTERIAL Conexibacter woesei ID131577, DSM 14684 ID131577, DSM 14684 Conexibacter woesei DSM 14684 DSM 14684, JCM 11494 Yes Gi02154 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 469383 20745 002806_GCAT 0 Draft GeneMark 6363 6185 72.6 Sanger, 454 USA Forest soil in Gerenzano Italy Italy Gerenzano, Italy 45.640618 9.002209 Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Pairs, Singles None Soil 28 Motile Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Flexibacteraceae Dyadobacter Dyadobacter fermentans BACTERIAL Dyadobacter fermentans NS114, DSM 18053 NS114, DSM 18053 Dyadobacter fermentans DSM 18053 CIP 107007, DSM 18053, ATCC 700827 Yes Gc01069 Gi02155 Genome Complete and Published Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org 2009-07-31 SIGS in press Tree of Life, GEBA 471854 20829 002807_GCAT 643886187 NC_013037 Complete Level 6: Finished 8Kb, Fosmid 86260 pMCL200, pcc1Fos Phred/Phrap/Consed 10.6x Sanger Prodigal 6967 5855 1 0 51.5 Sanger USA Surface sterilized stems from Zea mays about 1998 USA Madison-Wisconsin; USA 43.1 -89.4 Aerobe Rod-shaped Nonsporulating Mesophile 2 -3 um Yellow gram- Free living Chains, Pairs None Host, Soil 28 Nonmotile Chemoorganoheterotroph Bacteria Actinobacteria Actinobacteria (class) Rubrobacterales Patulibacteraceae Patulibacter BACTERIAL Patulibacter minatonensis KV-614, DSM 18081 KV-614, DSM 18081 DSM 18081, JCM 12834, NBRC 100761, NRRL B-24346 Yes Gi02156 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 298163 002808_GCAT 146359 0 0 0 72 454, Sanger USA Aerobe Rod-shaped Mesophile gram+ Free living None Soil 28 Motile Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Slackia Slackia heliotrinireducens BACTERIAL Slackia heliotrinireducens RHS 1, DSM 20476 RHS 1, DSM 20476 Slackia heliotrinireducens DSM 20476 NCTC 11029, ATCC 29202, DSM 20476, JCM 14554 Yes Gc01094 Gi02157 Genome Complete and Published Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org 2009-08-28 Unpublished Medical, GEBA, Tree of Life 471855 20831 002809_GCAT 0 NC_013165 Complete Level 6: Finished GeneMark 3165 2854 1 0 60.2 454, Sanger USA Sheep rumen, Australia Australia Sheep rumen, Australia Sheep Rumen Obligate anaerobe Rod-shaped Nonsporulating Mesophile White gram+ Free living None Rumen 42 - 48 Nonmotile Pyrrolizidine alkaloids metabolizer Bacteria Bacteroidetes Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes putredinis BACTERIAL Alistipes putredinis DSM 17216 DSM 17216 Alistipes putredinis DSM 17216 CIP 104286, Carlier 10203, VPI 3293, ATCC 29800, DSM 17216, CCUG 45780 Yes Gi02070 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi ALIPUT Animal Pathogen, Human Gut Microbiome Initiative (HGMI), Medical, Human Pathogen, Human Microbiome Project (HMP) 445970 19655 SRP000002 002718_GCAT 69 261716 641736205 NZ_ABFK00000000, ABFK00000000 Draft 47481 PCAP 11.6x GeneMark v3.3, Glimmer2 v2.13 35 2549 2798 53 Sanger, 454-GS20 USA Human feces DSM 17216 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Appendicitis, Ovine foot rot, Abscesses Host, Human intestinal microflora, Soil Nonmotile Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Anaerofustis Anaerofustis stercorihominis BACTERIAL Anaerofustis stercorihominis DSM 17244 DSM 17244 Anaerofustis stercorihominis DSM 17244 CIP 108481, ATCC BAA-858, DSM 17244, WAL 14563, CCUG 47767 Yes Gi02071 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi ANASTE Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 445971 19657 002719_GCAT 79 641736193 NZ_ABIL00000000, ABIL00000000 Draft 43622 PCAP 11.1x GeneMark v3.3, Glimmer2 v2.13 24 2284 2382 33 Sanger, 454-GS20 USA Human feces of an autistic child at Los Angeles, USA DSM 17244 USA Human feces of an autistic child at Los Angeles, USA 34.052187 -118.243425 Homo sapiens Child Autistic Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host, Human intestinal microflora 37 Non-Pathogen Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Anaerotruncus Anaerotruncus colihominis BACTERIAL Anaerotruncus colihominis DSM 17241 DSM 17241 Anaerotruncus colihominis DSM 17241 CIP 107754, DSM 17241, CCUG 45055, WAL 14565 Yes Gi02072 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi ANACOL Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 445972 19659 SRX000009 002720_GCAT 82 263911 641736271 NZ_ABGD00000000, ABGD00000000 Draft 32290 PCAP 6x GeneMark v3.3, Glimmer2 v2.13 63 3718 4500 54 Sanger, 454-GS20 USA Human feces from autistic child at Rush Childrens Hospital, Chicago DSM 17241 USA Rush Childrens Hospital, Chicago 41.875156 -87.667984 Homo sapiens Child Autistic Gastrointestinal tract Feces Anaerobe Rod-shaped Mesophile gram+ Free living None Host, Human intestinal microflora, Human fecal 37 Nonmotile Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia afzelii BACTERIAL Borrelia afzelii ACA-1 ACA-1 Borrelia afzelii ACA-1 Gi02073 Genome incomplete Public J. Craig Venter Institute NIH-NIAID BafzA Medical, Human Pathogen 445986 19841 002721_GCAT 268011 641736176 NZ_ABCU00000000 Draft 1400 1493 28 USA Skin lesion from a Lyme disease patient in Europe in 1993 1993 Skin lesion from a Lyme disease patient in Europe in 1993 Homo sapiens Patient with Lyme disease Skin Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Lyme disease, Acrodermatitis chronica atrophicans Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia garinii BACTERIAL Borrelia garinii PBr PBr Borrelia garinii PBr Gi02074 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Fraser-Liggett C cmfraser@som.umaryland.edu http://medschool.umaryland.edu/FACULTYRESEARCHPROFILE/viewprofile.aspx?id=20004 BgarP Medical, Human Pathogen 498743 28625 002722_GCAT 314123 642791628 NZ_ABJV00000000 Draft 8x 1278 1292 28 USA Human cerebrospinal fluid in Germany Germany Human cerebrospinal fluid in Germany Homo sapiens Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Lyme disease Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia valaisiana BACTERIAL Borrelia valaisiana VS116 VS116 Borrelia valaisiana VS116 Gi02075 Genome incomplete Public J. Craig Venter Institute NIH-NIAID BvalV Medical, Human Pathogen 445987 19843 002723_GCAT 260457 641736181 NZ_ABCY00000000 Draft 1300 1388 27.7 USA Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Lyme disease Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi 156a 156a Borrelia burgdorferi 156a Gi02076 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Fraser-Liggett C cmfraser@som.umaryland.edu http://medschool.umaryland.edu/FACULTYRESEARCHPROFILE/viewprofile.aspx?id=20004 Bbur Medical, Human Pathogen 445983 19835 002724_GCAT 641736177 NZ_ABCV00000000 Draft 1500 1655 28.1 USA Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Lyme disease Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi 29805 29805 Gi02077 Genome incomplete Public J. Craig Venter Institute NIH-NIAID JCVI Medical, Human Pathogen 498738 28621 002725_GCAT 330295 642791626 NZ_ABJX00000000 Draft 8x 38 887 902 1 15 28.6 Sanger USA Homo sapiens Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Lyme disease Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi ZS7 ZS7 Borrelia burgdorferi ZS7 Gc00906 Gi02078 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Fraser-Liggett C cmfraser@som.umaryland.edu http://medschool.umaryland.edu/FACULTYRESEARCHPROFILE/viewprofile.aspx?id=20004 BburZ 2008-12-17 Unpublished Medical, Human Pathogen 445985 19839 002726_GCAT 263647 643348517 NZ_ABCX00000000 Complete 906 1494 1 6 28 USA Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Lyme disease Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi 118a 118a Borrelia burgdorferi 118a Gi02079 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Fraser-Liggett C cmfraser@som.umaryland.edu http://medschool.umaryland.edu/FACULTYRESEARCHPROFILE/viewprofile.aspx?id=20004 Bbur Medical, Human Pathogen 476210 21001 002727_GCAT 265649 641736265 NZ_ABGI00000000 Draft 1492 1701 28 USA Human skin in New York USA New York 40.756054 -73.986951 Homo sapiens Skin Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Lyme disease Human skin, Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi 72a 72a Borrelia burgdorferi 72a Gi02080 Genome incomplete Public J. Craig Venter Institute NIH-NIAID JCVI http://www.jcvi.org/cms/contact/locations/ Bbur Medical, Human Pathogen 476211 21003 002728_GCAT 270217 641736266 NZ_ABGJ00000000 Draft 1307 1473 28 USA Human skin in New York USA Human skin in New York 40.756054 -73.986951 Homo sapiens Skin Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Lyme disease Human skin, Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi WI91-23 WI91-23 Borrelia burgdorferi WI91-23 Gi02270 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Fraser-Liggett C cmfraser@som.umaryland.edu http://medschool.umaryland.edu/FACULTYRESEARCHPROFILE/viewprofile.aspx?id=20004 BburW Medical, Human Pathogen 498737 28627 002987_GCAT 318566 642791627 NZ_ABJW00000000 Draft 8x 1661 1941 29 USA Blood of a song sparrow Blood of a song sparrow Sparrow Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Lyme disease Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi CA-11.2a CA-11.2a Borrelia burgdorferi CA-11.2a Gi02269 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Fraser-Liggett C cmfraser@som.umaryland.edu http://medschool.umaryland.edu/FACULTYRESEARCHPROFILE/viewprofile.aspx?id=20004 BburC Medical, Human Pathogen 498739 28629 002986_GCAT 333163 642791625 NZ_ABJY00000000 Draft 8x 1415 1558 28 USA low passage strain derived from the spirochete isolate CA-11-90 low passage strain derived from the spirochete isolate CA-11-90 Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Lyme disease Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi 80a 80a Borrelia burgdorferi 80a Gi02081 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Fraser-Liggett C cmfraser@som.umaryland.edu http://medschool.umaryland.edu/FACULTYRESEARCHPROFILE/viewprofile.aspx?id=20004 Bbur8 Medical, Human Pathogen 498736 28623 002729_GCAT 307772 642791629 NZ_ABJU00000000 Draft 8x 1798 2025 28 USA skin in a clinical case in Long Island, NY USA Long Island, NY Homo sapiens Patient Skin Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Lyme disease Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi 94a 94a Borrelia burgdorferi 94a Gi02082 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Fraser-Liggett C cmfraser@som.umaryland.edu http://medschool.umaryland.edu/FACULTYRESEARCHPROFILE/viewprofile.aspx?id=20004 Bbur Medical, Human Pathogen 476212 20999 002730_GCAT 267533 641736267 NZ_ABGK00000000 Draft 1343 1518 28 USA Human skin in New York USA Human skin in New York 40.756054 -73.986951 Homo sapiens Skin Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Lyme disease Human skin, Host Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia ubonensis BACTERIAL Burkholderia ubonensis Bu Bu Burkholderia ubonensis Bu Gi02083 Genome incomplete Public Naval Medical Research Center Read T http://www.umbi.umd.edu/~mbc/pages/read.htm BuboB 441166 19539 002731_GCAT 266310 641736123 ABBE01000000 Draft 6900 7309 67.3 USA Northern Australia Australia Northern Australia Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Soil Motile Bacteria Bacteroidetes Flavobacteria Flavobacteriales Candidatus Sulcia Candidatus Sulcia muelleri BACTERIAL Candidatus Sulcia muelleri GWSS GWSS Candidatus Sulcia muelleri GWSS Gc00693 Gi02084 Genome Complete and Published Public Univ of Arizona Moran, N nmoran@email.arizona.edu SMGWSS 2007-12-07 PNAS 104, 19392-7 Agricultural 444179 19617 002732_GCAT 257992 641228484 NC_010118 Complete 245 294 1 0 22 USA Mesophile gram- Symbiotic glassy-winged sharpshooter 197043 None Host Symbiotic Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium bartlettii BACTERIAL Clostridium bartlettii DSM 16795 DSM 16795 Clostridium bartlettii DSM 16795 ATCC 14880, DSM 16795 Yes Gi02085 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi CLOBAR Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 445973 19661 002733_GCAT 214 262492 641736113 NZ_ABEZ00000000, ABEZ00000000 Draft 45571 PCAP 9.1x GeneMark v3.3, Glimmer2 v2.13 162 2971 2871 28 Sanger, 454-GS20 USA Human feces DSM 16795 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Human intestinal microflora, Human fecal, Host Motile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Collinsella Collinsella stercoris BACTERIAL Collinsella stercoris DSM 13279 DSM 13279 Collinsella stercoris DSM 13279 JCM 10641, DSM 13279 Yes Gi02086 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 445975 19665 002734_GCAT 271 361012 642979321 ABXJ00000000, NZ_ABXJ00000000 Draft Newbler 2.0.00.20 19.8X GeneMark v3.3, Glimmer2 v2.13 273 2399 2585 63 454-FLX USA Human feces collected in Japan DSM 13279 Japan Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host 37 Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides stercoris BACTERIAL Bacteroides stercoris VPI B5-21, ATCC 43183 VPI B5-21, ATCC 43183 Bacteroides stercoris ATCC 43183 ATCC 43183, JCM 9496, CIP 104203T Yes Gi02147 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://www.genome.wustl.edu/sub_genome_group.cgi?GROUP=3&SUB_GROUP=4 BACSTE Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 449673 19859 SRX000010 002798_GCAT 139 262319 641736196 ABFZ00000000, NZ_ABFZ00000000 Draft 51576 PCAP 8.8x GeneMark v3.3, Glimmer2 v2.13 41 4009 3848 45 Sanger, 454-GS20 USA Human feces from Texas ATCC 43183 USA Human feces from Texas Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Human fecal, Host, Human intestinal microflora 37 Nonmotile Non-Pathogen Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae Catenibacterium Catenibacterium mitsuokai BACTERIAL Catenibacterium mitsuokai DSM 15897 DSM 15897 Catenibacterium mitsuokai DSM 15897 JCM 10609, DSM 15897 Yes Gi02148 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 451640 19923 SRP000012 002799_GCAT 199 643886110 NZ_ACCK00000000, ACCK00000000 Complete 698916 Newbler 2.0.00.20 46.6X 475 2671 3057 36 454-FLX USA Human feces collected in Japan DSM 15897 Japan Human feces collected in Japan Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Human fecal, Host, Human intestinal microflora Nonmotile Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Roseburia Roseburia faecis BACTERIAL Roseburia faecalis M72/1 M72/1 Roseburia faecis M72/1 DSM 16840, NCIMB 14031 Yes Gi02149 Genome targeted Public NIH Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 451638 19925 SRP000011 002800_GCAT 727 0 In progress 0 0 0 USA Human feces United Kingdom Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host 37 Motile Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Ruminococcus Ruminococcus sp. GM2/1 BACTERIAL Ruminococcus sp. GM2/1 GM2/1 Ruminococcus sp. GM2/1 Unknown Gi02150 Genome targeted Public NIH Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 451639 19927 002801_GCAT 747 0 Targeted 0 0 0 USA Human feces Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living None Host Nonmotile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 BACTERIAL Pseudomonas syringae tomato T1 T1 Pseudomonas syringae pv. tomato T1 Gi02087 Genome incomplete Public The Sainsbury Laboratory Vinatzer B vinatzer@vt.edu Comparative analysis, Agricultural 546231 19697 002735_GCAT 366431 642979329 NZ_ABSM00000000 Draft 20x 6145 5702 58 United Kingdom Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plants, Host, Soil Motile Heterotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Frankiaceae Frankia Frankia sp. BACTERIAL Frankia sp BCU110501 BCU110501 Gi02089 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Agricultural 1855 002737_GCAT 11682 0 0 0 0 USA Aerobe Filament-shaped Sporulating Mesophile gram+ Symbiotic Mutualistic None Plant symbiont, Host, Soil Nonmotile Nitrogen fixation, Non-Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Frankiaceae Frankia Frankia sp. BMG5.12 BACTERIAL Frankia sp BMG5.12 BMG5.12 Gi02091 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Agricultural 222534 002739_GCAT 93808 0 0 0 0 USA Aerobe Filament-shaped Sporulating Mesophile gram+ Symbiotic Mutualistic None Plant symbiont, Host, Soil Nonmotile Non-Pathogen, Nitrogen fixation Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Frankiaceae Frankia Frankia sp. BACTERIAL Frankia sp AmMr AmMr Gi02092 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Agricultural 1855 002740_GCAT 11682 0 0 0 0 USA Aerobe Filament-shaped Sporulating Mesophile gram+ Symbiotic Mutualistic None Plant symbiont, Host, Soil Nonmotile Non-Pathogen, Nitrogen fixation Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Syntrophomonadaceae Dethiobacter Dethiobacter alkaliphilus BACTERIAL Dethiobacter alkaliphilus AHT1 AHT1 Dethiobacter alkaliphilus AHT 1 DSM 19026 Yes Gi02093 Genome incomplete Public DOE Joint Genome Institute DOE Brune A microbes@cuba.jgi-psf.org Biotechnological, Bioremediation 555088 30985 002741_GCAT 224884 643886183 NZ_ACJM00000000 Draft 6200 3163 0 USA sediment from a highly alkaline saline soda lake in north–eastern Mongolia Russia sediment from a highly alkaline saline soda lake in north–eastern Mongolia Anaerobe Rod-shaped Sporulating Mesophile Halophile gram+ Free living None Soda lakes, Sediment Motile Alkaliphile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micromonosporaceae Micromonospora Micromonospora aurantiaca BACTERIAL Micromonospora aurantiaca ATCC 27029 ATCC 27029 DSM 43813, ATCC 27029 Yes Gi02094 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 644283 37957 002742_GCAT 12856 0 In progress 0 0 0 USA Soil Aerobe Sporulating Mesophile gram+ Free living None Soil 37 Polyisoprene rubber degrader Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micromonosporaceae actinomycete L5 BACTERIAL Micromonospora sp L5 L5 Gi02096 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 264577 002796_GCAT 110081 0 0 0 0 USA Aerobe Sporulating Mesophile gram+ Free living None Fresh water, Soil Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Zymomonas Zymomonas mobilis BACTERIAL Zymomonas mobilis mobilis CP4 CP4 Zymomonas mobilis subsp. mobilis CP4 Gi02097 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bioenergy, Energy production, Biotechnological, Biofuels 627343 35033 002744_GCAT 112656 0 2000 0 0 USA Fermenting sugarcane juice Fermenting sugarcane juice Facultative Rod-shaped Mesophile gram- Free living None Motile Ethanol production Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Zymomonas Zymomonas mobilis BACTERIAL Zymomonas mobilis mobilis ATCC 10988 ATCC 10988 Zymomonas mobilis subsp. mobilis ATCC 10988 ATCC 10988 Yes Gi02098 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bioenergy, Biofuels, Biotechnological, Energy production 555217 30987 002745_GCAT 0 NZ_ACQU00000000 Draft 24 2095 1893 46 USA Fermenting Agave juice originally isolated as Pseudomonas lindneri Fermenting Agave juice Facultative Rod-shaped Mesophile gram- Free living None Motile Ethanol production Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Zymomonas Zymomonas mobilis BACTERIAL Zymomonas mobilis mobilis ATCC 29191 ATCC 29191 Zymomonas mobilis subsp. mobilis ATCC 29191 ATCC 29191 No Gi02099 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bioenergy, Energy production, Biotechnological, Biofuels 627344 35035 002746_GCAT 112656 0 2000 0 0 USA Fermenting Elaeis palm sap Fermenting Elaeis palm sap Facultative Rod-shaped Mesophile gram- Free living None Motile Ethanol production Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Zymomonas Zymomonas mobilis BACTERIAL Zymomonas mobilis pomaceae ATCC 29192 ATCC 29192 Zymomonas mobilis subsp. pomaceae ATCC 29192 ATCC 29192 Yes Gi02100 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bioenergy, Energy production, Biotechnological, Biofuels 579138 34927 002747_GCAT 112613 0 In progress 2000 0 47.7 USA Sick cider Sick cider Facultative Rod-shaped Mesophile gram- Free living None Motile Ethanol production Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Zymomonas Zymomonas mobilis BACTERIAL Zymomonas mobilis NCIB 11163 NCIB 11163 Zymomonas mobilis subsp. mobilis NCIB 11163 NCIB 11163 Gi02101 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bioenergy, Energy production, Biotechnological, Biofuels 622759 34821 002748_GCAT 50955 0 2000 0 45.1 USA Spoiled beer Spoiled beer Facultative Rod-shaped Mesophile gram- Free living None Motile Ethanol production Bacteria Proteobacteria Gammaproteobacteria Methylococcales Methylococcaceae Methylomicrobium BACTERIAL Methylomicrobium album BG8 BG8 Gi02102 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 39775 002749_GCAT 8064 0 DNA Received 0 0 0 USA Mesophile gram- Free living None Soil 30 Hydrocarbon degrading, Methane oxidation Methanotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Methylocystaceae Methylosinus Methylosinus trichosporium BACTERIAL Methylosinus trichosporium OB3b OB3b ATCC 35070 Yes Gi02103 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bioremediation, Environmental, Biotechnological 595536 002750_GCAT 74224 0 In progress 0 0 0 USA Mesophile gram- Free living None Soil Pollutant degrader, TCE degrader, Methane oxidation Methanotroph Bacteria Proteobacteria Gammaproteobacteria Chromatiales Chromatiaceae Allochromatium Allochromatium vinosum BACTERIAL Allochromatium vinosum DSM 180 DSM 180 Allochromatium vinosum DSM 180 DSM 180, ATCC 17899 Yes Gi02104 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Hydrogen production, Environmental 572477 32547 002751_GCAT 0 NZ_ACQQ00000000 Draft 66 3630 3327 64 USA Ditch water Ditch water Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Fresh water 25 Motile Sulfur oxidizer Phototroph Bacteria Proteobacteria Gammaproteobacteria Chromatiales Halothiobacillaceae Halothiobacillus Halothiobacillus neapolitanus BACTERIAL Halothiobacillus neapolitanus c2, ATCC 23641 c2, ATCC 23641 Halothiobacillus neapolitanus c2 ATCC 23641 Gi02105 Genome incomplete Public DOE Joint Genome Institute DOE Brune A microbes@cuba.jgi-psf.org Evolutionary, Biotechnological 555778 31049 002752_GCAT 643886100 NZ_ACJO00000000 Draft 5100 2438 0 USA Sulfide-rich natural spa Sulfide-rich natural spa Aerobe Rod-shaped Mesophile gram- Free living None 30 - 40 Motile Sulfur oxidizer, Carbon fixation Chemolithoautotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Thiomonas Thiomonas intermedia BACTERIAL Thiomonas intermedia K12 K12 Thiomonas intermedia K12 Gi02106 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 75379 33641 002753_GCAT 104125 0 NZ_ACXV00000000 Draft 93 3397 3279 63 454-Titanium, 454-FLX USA sewage pipe in Hamburg Germany Germany Hamburg, Germany 53.553407 9.992196 Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Motile Sulfur oxidizer, Acidophile Mixotroph Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae SP195 SP195 9V Streptococcus pneumoniae SP195 ATCC 700671 Gi02117 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Tettelin H http://www.tigr.org/faculty/Tettelin_Herve/index.shtml SP Medical, Human Pathogen 453363 20541 002768_GCAT 260427 641736272 NZ_ABGE00000000 Draft 2196 2104 39 Sanger USA "Clinical isolate from Toulouse, France" France Clinical isolate from Toulouse, France 43.604363 1.442951 Homo sapiens Patient Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia, Meningitis, Otitis media Nasopharyngeal microflora, Host 30 - 35 Nonmotile Pathogen, Alpha-hemolytic Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae CDC3059-06 CDC3059-06 Streptococcus pneumoniae CDC3059-06 Gi02118 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Tettelin H http://www.tigr.org/faculty/Tettelin_Herve/index.shtml SP Medical, Human Pathogen 453365 20543 002769_GCAT 641736274 NZ_ABGG00000000 Draft 2292 2247 39 Sanger USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia, Meningitis, Otitis media Host, Nasopharyngeal microflora 30 - 35 Nonmotile Pathogen, Alpha-hemolytic Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae CDC0288-04 CDC0288-04 Streptococcus pneumoniae CDC0288-04 Gi02119 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Tettelin H http://www.tigr.org/faculty/Tettelin_Herve/index.shtml SP Medical, Human Pathogen 453364 20545 002770_GCAT 641736273 NZ_ABGF00000000 Draft 2049 1999 39 Sanger USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Pneumonia, Meningitis, Otitis media Host, Nasopharyngeal microflora 30 - 35 Nonmotile Pathogen, Alpha-hemolytic Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae CDC1087-00 CDC1087-00 Streptococcus pneumoniae CDC1087-00 Gi02120 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Tettelin H http://www.tigr.org/faculty/Tettelin_Herve/index.shtml SP Medical, Human Pathogen 453361 20777 002771_GCAT 641736204 NZ_ABFT00000000 Draft 2187 1919 39 Sanger USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Pneumonia, Meningitis, Otitis media Host, Nasopharyngeal microflora 30 - 35 Nonmotile Pathogen, Alpha-hemolytic Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae CDC1873-00 CDC1873-00 Streptococcus pneumoniae CDC1873-00 Gi02121 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Tettelin H http://www.tigr.org/faculty/Tettelin_Herve/index.shtml SP Medical, Human Pathogen 453362 20775 002772_GCAT 641736183 NZ_ABFS00000000 Draft 2263 2163 39 Sanger USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Pneumonia, Meningitis, Otitis media Host, Nasopharyngeal microflora 30 - 35 Nonmotile Pathogen, Alpha-hemolytic Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae MLV-016 MLV-016 Streptococcus pneumoniae MLV-016 Gi02122 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Tettelin H http://www.tigr.org/faculty/Tettelin_Herve/index.shtml SPMLV Medical, Human Pathogen 453366 20967 002773_GCAT 641736264 NZ_ABGH00000000 Draft 2242 2017 39 Sanger USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia, Meningitis, Otitis media Host, Nasopharyngeal microflora 30 - 35 Nonmotile Pathogen, Alpha-hemolytic Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi Bol26 Bol26 Borrelia burgdorferi Bol26 Gi02123 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Fraser-Liggett C cmfraser@som.umaryland.edu http://medschool.umaryland.edu/FACULTYRESEARCHPROFILE/viewprofile.aspx?id=20004 BburB Medical, Human Pathogen 445984 19837 002774_GCAT 641736178 NZ_ABCW00000000 Draft 1328 1482 28 Sanger USA Homo sapiens Skin Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Lyme disease Host Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli SECEC SMS-3-5 SECEC SMS-3-5 Escherichia coli SMS-3-5 Gc00750 Gi02124 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Ravel J http://www.tigr.org/faculty/Ravel_Jacques/ EcSMS35 2008-03-20 Unpublished Medical, Human Pathogen 439855 19469 002775_GCAT 263843 641522624 NC_010498 Complete 5068 5047 1 4 50.5 USA Toxic-metal contaminated site Shipyard Creek Charleston South Carolina Environmenrtal strain USA Shipyard Creek Charleston South Carolina 32.838433 -79.941044 Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Human intestinal microflora, Host 37 Motile Non-Pathogen, Moxifloxacin resistant, Ciprofloxacin resistant Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 EC4024 EC4024 Escherichia coli O157:H7 str. EC4024 Gi02125 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Ravel J http://www.tigr.org/faculty/Ravel_Jacques/ EscherichcoliO157 Human Pathogen, Medical 444454 27747 002776_GCAT 317681 642791630 NZ_ABJT00000000 Draft 8x 6199 6540 50 Sanger USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea, Hemorrhagic colitis Host, Human intestinal microflora 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 EC4042 EC4042 Escherichia coli O157:H7 str. EC4042 Gi02126 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Ravel J http://www.tigr.org/faculty/Ravel_Jacques/ EschercoliO157 Medical, Human Pathogen 444449 27737 002777_GCAT 262191 641736212 NZ_ABHM00000000 Draft 5786 6529 50 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea, Hemorrhagic colitis Host, Human intestinal microflora 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 EC4045 EC4045 Escherichia coli O157:H7 str. EC4045 Gi02127 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Ravel J http://www.tigr.org/faculty/Ravel_Jacques/ EschericoliO157 Medical, Human Pathogen 444448 27733 002778_GCAT 355496 641736213 NZ_ABHL00000000 Draft 5713 6490 50 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea, Hemorrhagic colitis Host, Human intestinal microflora 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 EC4076 EC4076 Escherichia coli O157:H7 str. EC4076 Gi02128 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Ravel J http://www.tigr.org/faculty/Ravel_Jacques/ EscoliO157 Medical, Human Pathogen 444453 27745 002779_GCAT 293449 641736220 NZ_ABHQ00000000 Draft 5705 6509 50 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea, Hemorrhagic colitis Host, Human intestinal microflora 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 EC4113 EC4113 Escherichia coli O157:H7 str. EC4113 Gi02129 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Ravel J http://www.tigr.org/faculty/Ravel_Jacques/ EsccoliO157 Medical, Human Pathogen 444452 27743 002780_GCAT 286186 641736221 NZ_ABHP00000000 Draft 5655 6466 50 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea, Hemorrhagic colitis Host, Human intestinal microflora 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 EC4115 EC4115 Escherichia coli O157:H7 str. EC4115 Gc00867 Gi02130 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Ravel J http://www.tigr.org/faculty/Ravel_Jacques/ EschecoliO157 2008-10-08 Unpublished Comparative analysis, Medical, Human Pathogen 444450 27739 002781_GCAT 265419 643348549 NC_011353 Complete 5572 6405 1 2 50 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea, Hemorrhagic colitis Host, Human intestinal microflora 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 EC4196 EC4196 Escherichia coli O157:H7 str. EC4196 Gi02131 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Ravel J http://www.tigr.org/faculty/Ravel_Jacques/ EschcoliO157 Medical, Human Pathogen 444451 27741 002782_GCAT 286158 641736214 NZ_ABHO00000000 Draft 5620 6418 50 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea, Hemorrhagic colitis Host, Human intestinal microflora 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 EC4206 EC4206 Escherichia coli O157:H7 str. EC4206 Gi02132 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Ravel J http://www.tigr.org/faculty/Ravel_Jacques/ EschericcoliO157 Medical, Human Pathogen 444447 27735 002783_GCAT 260250 641736210 NZ_ABHK00000000 Draft 5913 6679 50 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea, Hemorrhagic colitis Host, Human intestinal microflora 37 Motile Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium perfringens BACTERIAL Clostridium perfringens type B - ATCC 3626 type B - ATCC 3626 Clostridium perfringens B str. ATCC 3626 ATCC 3626 Gi02133 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Paulsen I http://www.tigr.org/faculty/Paulsen_Ian/index.shtml AC Animal Pathogen, Biothreat, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 451754 20027 002784_GCAT 258525 641736146 NZ_ABDV00000000 Draft 9.56X 3896 3469 28 Sanger USA Intestinal contents of a lamb Intestinal contents of a lamb Lamb Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Food poisoning, Enterotoxemia, Gas gangrene, Dysenteria, Enterocolitis Host, Soil 37 Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium perfringens BACTERIAL Clostridium perfringens type C - JGS1495 type C - JGS1495 Clostridium perfringens C str. JGS1495 Gi02134 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Paulsen I http://www.tigr.org/faculty/Paulsen_Ian/index.shtml CPC Animal Pathogen, Biothreat, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 445334 20025 002785_GCAT 270573 641736143 NZ_ABDU00000000 Draft 3661 3370 28 Sanger USA Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Gas gangrene, Food poisoning, Dysenteria, Enterocolitis, Enterotoxemia Host, Soil Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium perfringens BACTERIAL Clostridium perfringens CPE F4969 CPE F4969 Clostridium perfringens CPE str. F4969 Gi02135 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Paulsen I http://www.tigr.org/faculty/Paulsen_Ian/index.shtml AC Animal Pathogen, Biothreat, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 451756 20031 002786_GCAT 266750 641736153 NZ_ABDX00000000 Draft 10.07X 3510 3253 28 Sanger USA Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Gas gangrene, Food poisoning, Dysenteria, Enterocolitis, Enterotoxemia Host, Soil Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium perfringens BACTERIAL Clostridium perfringens JGS1721 JGS1721 Clostridium perfringens D str. JGS1721 Gi02136 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Paulsen I http://www.tigr.org/faculty/Paulsen_Ian/index.shtml CJD Animal Pathogen, Biothreat, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 488537 28587 002787_GCAT 261929 641736249 NZ_ABOO00000000 Draft 7.94X 4045 3605 28.3 USA Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Gastroenteritis, Gas gangrene, Dysenteria, Enterotoxemia, Enterocolitis, Food poisoning Host, Soil Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium perfringens BACTERIAL Clostridium perfringens type E - JGS1987 type E - JGS1987 Clostridium perfringens E str. JGS1987 Gi02137 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Paulsen I http://www.tigr.org/faculty/Paulsen_Ian/index.shtml AC Animal Pathogen, Biothreat, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 451755 20029 002788_GCAT 270124 641736145 NZ_ABDW00000000 Draft 9.06X 4127 3865 28 Sanger USA Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Gas gangrene, Food poisoning, Dysenteria, Enterocolitis, Enterotoxemia Host, Soil Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium perfringens BACTERIAL Clostridium perfringens NCTC 8239 NCTC 8239 Clostridium perfringens NCTC 8239 NCTC 8239 Gi02138 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Paulsen I http://www.tigr.org/faculty/Paulsen_Ian/index.shtml AC Animal Pathogen, Biothreat, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 451757 20033 002789_GCAT 264227 641736152 NZ_ABDY00000000 Draft 11.23X 3324 3053 0 Sanger USA Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Gas gangrene, Food poisoning, Dysenteria, Enterocolitis, Enterotoxemia Host, Soil Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum Bf Bf Clostridium botulinum Bf Gi02139 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Paulsen I http://www.tigr.org/faculty/Paulsen_Ian/index.shtml CBB Biothreat, Medical, Human Pathogen 445336 20015 002790_GCAT 269119 641736148 NZ_ABDP00000000 Draft 9.38X 4217 4160 28 USA Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Botulism Food 37 Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum Iwanei E Iwanei E Clostridium botulinum str. Iwanei E Gi02140 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Paulsen I http://www.tigr.org/faculty/Paulsen_Ian/index.shtml Biothreat, Medical, Human Pathogen 445338 20019 002791_GCAT 0 0 0 0 USA Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Botulism Food 37 Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum NCTC 2916 NCTC 2916 Clostridium botulinum NCTC 2916 Gi02141 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Paulsen I http://www.tigr.org/faculty/Paulsen_Ian/index.shtml CBN Biothreat, Human Pathogen, Medical 445335 20013 002792_GCAT 261972 641736137 NZ_ABDO00000000 Draft 9.7X 4031 3938 28 Sanger USA Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Botulism Food 37 Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum type C - Eklund type C - Eklund Clostridium botulinum C str. Eklund Gi02142 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Paulsen I http://www.tigr.org/faculty/Paulsen_Ian/index.shtml CBC Medical 445337 20017 002793_GCAT 261676 641736147 NZ_ABDQ00000000 Draft 11.43X 2961 2848 29 Sanger USA Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None 37 Motile Non-Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum G G Clostridium botulinum G Gi02143 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Paulsen I http://www.tigr.org/faculty/Paulsen_Ian/index.shtml Biothreat, Medical, Human Pathogen 447213 20021 002794_GCAT 16181 0 In progress 0 0 0 Sanger USA Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Singles, Pairs Botulism 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Alphaproteobacteria Caulobacterales Caulobacteraceae Phenylobacterium Phenylobacterium zucineum BACTERIAL Phenylobacterium zucineum HLK1 HLK1 Phenylobacterium zucineum HLK1 DSM 18354, CGMCC 1.3786 Gc00847 Gi02455 Genome Complete and Published Public Beijing Genomics Institute, Zhejiang Univ Luo Y luoyingfeng@zj165.com PHZ 2008-08-18 BMC Genomics 9, 386 Medical 450851 19931 002795_GCAT 642555147 NC_011144 Complete 3996 3899 1 1 71.2 China Human erythroleukemia cell line K562 16908113 Human erythroleukemia cell line K562 Homo sapiens Blood Aerobe Rod-shaped Mesophile 6.5 - 7.5 gram- Free living Unknown Host 37 Motile Nonfermentative Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella piezotolerans BACTERIAL Shewanella piezotolerans WP3 WP3 Shewanella piezotolerans WP3 JCM 13877, CIP 109515, CGMCC 1.6160 Yes Gc00884 Gi01656 Genome Complete and Published Public Beijing Genomics Institute Wang F xxwfp@public.xm.fj.cn 2008-11-14 PLoS ONE 3 (4), E1937 Biotechnological 225849 17675 001491_GCAT 359942 0 NC_011566 Complete 2Kb, 3Kb, 5Kb 85529 pUC18 Phred/Phrap/Consed 6.52x Glimmer 5396 4933 1 0 43 Sanger China Sediment; under 1,914 m of water depth collected in the west Pacific Ocean Sediment; under 1,914 m of water depth collected in the west Pacific Ocean 8.003056 -142.502222 1914 meters Facultative Rod-shaped Nonsporulating Psychrotolerant gram- Free living Pairs, Singles None Sediment, Marine, Deep sea 15 - 20 Motile Piezophile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella benthica BACTERIAL Shewanella benthica KT99, PT99 KT99, PT99 Shewanella benthica KT99 Gi00885 Genome incomplete Public Scripps Institute of Oceanography, J. Craig Venter Institute Moore Foundation, NSF Yayanos AA http://mbrd.ucsd.edu/labpages/yayanos_lab.cfm KT Marine Microbial Initiative (MMI), Environmental 314608 13387 001492_GCAT 240758 641380425 NZ_ABIC00000000 Draft 4351 4489 45 USA 9000 m depth in the Tonga-Kermadec Trench in the Pacific Ocean 9000 m depth in the Tonga-Kermadec Trench in the Pacific Ocean -20.00000 -173.00000 9000 meters Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Marine, Deep sea Motile Piezophile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella putrefaciens BACTERIAL Shewanella putrefaciens 200 200 Shewanella putrefaciens 200 Gi00554 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Sput Biotechnological, Medical, Human Pathogen 399804 13392 001493_GCAT 215416 640196205 NZ_AAWY00000000 Draft 13x 4700 4315 44.4 Sanger USA "Crude-oil pipeline from Alberta, Canada" Canada Alberta, Canada Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Endocarditis, Pneumonia Fresh water, Soil Motile Pathogen, Iron reducer Heterotroph Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella violacea BACTERIAL Shewanella violacea DSS12 DSS12 Shewanella violacea JCM 10179 Gi00557 Genome incomplete Public Keio Univ, Kinki Univ, JAMSTEC Nakasone K nakasone@hiro.kindai.ac.jp Biotechnological 637905 001498_GCAT 9008 0 Complete 4900 0 0 Japan Mud taken at a depth of 5110m from the Ryukyu Trench in the Philippine Sea Mud taken at a depth of 5110m from the Ryukyu Trench in the Philippine Sea Facultative Rod-shaped Nonsporulating Psychrophile gram- Free living Pairs, Singles None Sediment, Mud Motile Piezophile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Shigella Shigella boydii BACTERIAL Shigella boydii BS512,CDC 3083-94 BS512,CDC 3083-94 18 Shigella boydii CDC 3083-94 Gc00779 Gi01141 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Ravel J jravel@som.umaryland.edu SbBS512 2008-05-05 Unpublished Medical, Human Pathogen 344609 15637 001499_GCAT 138896 641522650 NC_010658 Complete 4-5 Kb, 10-12 Kb 4615 4848 1 5 51 Sanger USA 12-year-old boy in Arizona by Dr. Nancy Stockbine USA 12-year-old boy in Arizona by Dr. Nancy Stockbine Homo sapiens Male 12 years old Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Dysenteria, Food poisoning Host 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Shigella Shigella dysenteriae BACTERIAL Shigella dysenteriae 1012 1012 4 Shigella dysenteriae 1012 Gi01276 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Sdys Medical, Human Pathogen 358708 16194 001500_GCAT 317209 638341196 NZ_AAMJ00000000 Draft 3013 2834 50.8 Sanger USA Bangledesh Bangledesh Bangledesh Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Food poisoning Host 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Shigella Shigella dysenteriae BACTERIAL Shigella dysenteriae M131649 M131649 Shigella dysenteriae M131649 Gi00558 Genome incomplete Public Sanger Institute, Institut Pasteur Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Biothreat, Medical, Human Pathogen 216598 346 001501_GCAT 0 4771 0 50 United Kingdom Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Dysenteria, Food poisoning Host 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Shigella Shigella sonnei BACTERIAL Shigella sonnei 53G 53G Shigella sonnei 53G Gi00559 Genome incomplete Public Sanger Institute, Institut Pasteur Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical, Human Pathogen 216599 347 001502_GCAT 0 0 0 50 United Kingdom Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Dysenteria, Food poisoning Host Motile Pathogen Chemoorganotroph Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Simkaniaceae Simkania BACTERIAL Simkania negevensis Z Z Simkania negevensis Gi00771 Genome incomplete Public J. Craig Venter Institute Medical, Human Pathogen 83561 12528 001503_GCAT 2935 0 0 0 0 USA Mesophile gram- Free living Respiratory infection, Bronchiolitis, Pneumonia Host, Wastewater Pathogen Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas BACTERIAL Sphingomonas elodea Sphingomonas elodea Gi00712 Genome incomplete Public Monsanto, Hiram College Biotechnological 179878 15728 001506_GCAT 65329 0 0 0 0 USA Stone Valley Lake in Pennsylvania USA Stone Valley Lake in Pennsylvania 40.787143 -77.858309 Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Fresh water Motile Heterotroph Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. SKA58 BACTERIAL Sphingomonas sp SKA58 SKA58 Sphingomonas sp. SKA58 Gi00886 Genome incomplete Public Univ of Kalmar, J. Craig Venter Institute Moore Foundation Hagstrom A http://halia.hik.se/start.jsp?page=members/ake%20hagstrom SKA Marine Microbial Initiative (MMI), Environmental 314266 13584 001507_GCAT 157801 638341199 NZ_AAQG00000000 Draft 3948 4039 64 Sanger USA Seawater taken at a depth of 2-5m from the north Atlantic Ocean North Atlantic 58.94083 11.07944 2-5 meters Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Marine Motile Heterotroph Bacteria Tenericutes Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma BACTERIAL Spiroplasma citri Spiroplasma citri Gi00565 Genome incomplete Public Central Washington Univ USDA, NSF Verhey S http://www.cwu.edu/~biology/faculty/verhey.html Plant Pathogen, Agricultural 2133 13401 001508_GCAT 142221 0 0 0 0 USA Facultative Spiral-shaped Mesophile gram- Free living Citrus stubborn Host Motile Pathogen Bacteria Tenericutes Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma kunkelii BACTERIAL Spiroplasma kunkelii CR2-3x CR2-3x Spiroplasma kunkelii CR2-3x Gi00566 Genome incomplete Public Univ of Oklahoma USDA Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Plant Pathogen, Agricultural 273035 203 001509_GCAT 148669 0 1600 0 0 USA Maize leaves from a plant naturally infected in Costa Rica Costa Rica Maize leaves from a plant naturally infected in Costa Rica Facultative Spiral-shaped Mesophile gram+ Free living Corn stunt Host 30 - 32 Motile Pathogen Bacteria Tenericutes Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma BACTERIAL Spiroplasma kunkelii NM2 NM2 Gi00567 Genome incomplete Public Ohio State Univ Hogenhout S http://iris.biosci.ohio-state.edu/osuent/personnel/hogenhout.html Agricultural, Plant Pathogen 47834 001510_GCAT 148669 0 0 0 26 USA Facultative Spiral-shaped Mesophile gram- Free living Corn stunt Host 30 - 32 Motile Pathogen Bacteria Cyanobacteria Oscillatoriales Arthrospira BACTERIAL Arthrospira platensis Arthrospira platensis Gi00588 Genome incomplete Public Human Genome Center, Beijing Zhang C-C cczhang@ir2cbm.cnrs-mrs.fr Food industry, Dietary supplement 118562 13465 001511_GCAT 152513 0 0 0 0 China African and Central and South American alkaline salt lakes African and Central and South American alkaline salt lakes Facultative Spiral-shaped Mesophile gram- Free living None Fresh water Bacteria Cyanobacteria Oscillatoriales Arthrospira Arthrospira sp. PCC 8005 BACTERIAL Arthrospira sp. PCC 8005 PCC 8005 PCC 8005 Gi01522 Genome incomplete Public Genoscope Barbe V vbarbe@genoscope.cns.fr Environmental, Biotechnological 376219 001512_GCAT 70913 0 5700 0 0 France Facultative Spiral-shaped Mesophile gram- Free living None Fresh water Motile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus aureus 930131 930131 Gi00591 Genome incomplete Proprietary Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Animal Pathogen, Cattle Pathogen, Poultry Pathogen, Medical, Human Pathogen 1280 001513_GCAT 174938 0 2564 2654 37 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Staphylococcal scarlet fever, Toxic-shock syndrome Host 30 - 37 Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus aureus ATCC 29213 ATCC 29213 ATCC 29213 Gi00592 Genome incomplete Proprietary Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Animal Pathogen, Cattle Pathogen, Poultry Pathogen, Medical, Human Pathogen 1280 001514_GCAT 174938 0 2621 2858 37 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Staphylococcal scarlet fever, Toxic-shock syndrome Host 30 - 37 Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus aureus Gi00590 Genome incomplete Proprietary Genome Therapeutics Animal Pathogen, Cattle Pathogen, Poultry Pathogen, Medical, Human Pathogen 1280 001515_GCAT 174938 0 Complete 0 0 37 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Staphylococcal scarlet fever, Toxic-shock syndrome Host 30 - 37 Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus aureus 0582 0582 Gi01683 Genome incomplete Public St George's Medical School, Sanger Institute, Guy's and St Thomas' Hospital Guy's & St Thomas' Charity Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Animal Pathogen, Cattle Pathogen, Poultry Pathogen, Medical, Human Pathogen 1280 001518_GCAT 174938 0 3000 0 0 United Kingdom Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Toxic-shock syndrome, Staphylococcal scarlet fever Host 30 - 37 Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus aureus EMRSA15 EMRSA15 Gi01684 Genome incomplete Public Sanger Institute, Imperial College Department of Health Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Animal Pathogen, Cattle Pathogen, Poultry Pathogen, Medical, Human Pathogen 1280 001519_GCAT 174938 0 2800 0 0 United Kingdom Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Staphylococcal scarlet fever, Toxic-shock syndrome Host 30 - 37 Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus carnosus BACTERIAL Staphylococcus carnosus TM300 TM300 Gc00955 Gi00598 Genome Complete and Published Public MWG-Biotech, Univ of Wuerzburg Rosenstein R ralf.rosenstein@uni-tuebingen.de Sca 2009-02-02 Appl Environ Microbiol. 75, 811-22 Food industry, Biotechnological 396513 34811 001520_GCAT 14830 0 AM295250, NC_012121 Complete 3-4Kb 42925 Paracel 11.8x GenDB 2566 2474 1 0 34.6 Germany Bavaria, Germany Germany Bavaria, Germany 50.024682 11.762694 Facultative Nonsporulating Mesophile gram+ Free living Clusters, Singles None Nonmotile Non-Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus epidermidis ATCC 14990 ATCC 14990 ATCC 14990 Gi00600 Genome incomplete Proprietary Integrated Genomics Inc Integrated Genomics Inc IG contact@integratedgenomics.com Medical, Human Pathogen 1282 001521_GCAT 236219 0 2377 2394 0 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Staphylococcal scarlet fever, Toxic-shock syndrome Host 30 - 37 Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus epidermidis Gi00599 Genome incomplete Proprietary Genome Therapeutics Medical, Human Pathogen 1282 001522_GCAT 236219 0 Complete 0 0 32 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Staphylococcal scarlet fever, Toxic-shock syndrome Host 30 - 37 Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus xylosus C2a C2a Staphylococcus xylosus DSM 20267 No Gi01086 Genome incomplete Public INRA, Genoscope Wincker P pwincker@genoscope.cns.fr Biotechnological, Medical, Food industry 1288 15714 001523_GCAT 253466 0 2800 0 0 France Aerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles None Host, Skin microflora Nonmotile Opportunistic Pathogen Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Stenotrophomonas Stenotrophomonas maltophilia BACTERIAL Stenotrophomonas maltophilia K279a K279a Stenotrophomonas maltophilia K279a Gc00785 Gi00603 Genome Complete and Published Public Sanger Institute, Univ of Bristol Parkhill J parkhill@sanger.ac.uk http://www.sanger.ac.uk/Users/parkhill/ Smlt 2008-06-09 Genome Biology 9, R74 Medical, Human Pathogen 522373 30351 001524_GCAT 138810 642555161 NC_010943 Complete 4851 4386 1 0 66.3 United Kingdom Blood of a elderly male patient undergoing chemotherapy at the Bristol Oncology Unit, Bristol, UK in 1998 1988 United Kingdom Blood of a elderly male patient undergoing chemotherapy at the Bristol Oncology Unit, Bristol, UK in 1998 51.458946 -2.598424 Homo sapiens Male Elderly Patient undergoing chemotherapy Blood Aerobe Mesophile gram- Free living Pulmonary infection, Bacteremia, Nosocomial infection, Opportunistic infection Fresh water, Soil, Plants, Host Nonfermentative, Pathogen Bacteria Proteobacteria Deltaproteobacteria Myxococcales Cystobacteraceae Stigmatella Stigmatella aurantiaca BACTERIAL Stigmatella aurantiaca DW4 /3-1 DW4 /3-1 Gi00604 Genome incomplete Proprietary Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Biotechnological 378806 001526_GCAT 639857000 0 0 0 USA Aerobe Rod-shaped Sporulating Mesophile gram- Free living None Soil Motile Bacteria Proteobacteria Deltaproteobacteria Myxococcales Cystobacteraceae Stigmatella Stigmatella aurantiaca BACTERIAL Stigmatella aurantica DW4/3-1 DW4/3-1 Stigmatella aurantiaca DW4/3-1 Gi01037 Genome incomplete Public J. Craig Venter Institute STIAU Biotechnological 378806 15671 001527_GCAT 639857000 NZ_AAMD00000000 Draft 10265 8596 67.4 Sanger USA Aerobe Rod-shaped Sporulating Mesophile gram- Free living None Soil Motile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae BACTERIAL Streptococcus agalactiae 18RS21, ATCC BAA-1175 18RS21, ATCC BAA-1175 Streptococcus agalactiae 18RS21 ATCC BAA-1175 Gi01165 Genome incomplete Public J. Craig Venter Institute Rappuoli R rino_rappuoli@chiron.com SAJ Medical, Human Pathogen 342613 15605 001528_GCAT 139760 638341202 NZ_AAJO00000000 Draft Celera 8x Glimmer 2193 2924 36.9 Sanger USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Septicemia, Meningitis, Pneumonia Host 37 Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae BACTERIAL Streptococcus agalactiae 515, ATCC BAA-1177 515, ATCC BAA-1177 Ia Streptococcus agalactiae 515 ATCC BAA-1177 Gi01166 Genome incomplete Public J. Craig Venter Institute Rappuoli R rino_rappuoli@chiron.com SAL Medical, Human Pathogen 342614 15606 001529_GCAT 515 638341203 NZ_AAJP00000000 Draft Celera 8x Glimmer 2088 2367 35 Sanger USA cerebrospinal fluid from neonatal 3-4-1977 Homo sapiens neonatal Brain Cerebro-spinal fluid Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Septicemia, Meningitis, Pneumonia Host 37 Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae BACTERIAL Streptococcus agalactiae CJB111, ATCC BAA-23 CJB111, ATCC BAA-23 Streptococcus agalactiae CJB111 ATCC BAA-23 Gi01167 Genome incomplete Public J. Craig Venter Institute Rappuoli R rino_rappuoli@chiron.com SAM Medical, Human Pathogen 342617 15607 001530_GCAT 638341204 NZ_AAJQ00000000 Draft Celera 8x Glimmer 2105 2301 35 Sanger USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Septicemia, Meningitis, Pneumonia Host 37 Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae BACTERIAL Streptococcus agalactiae COH1, ATCC BAA-1176 COH1, ATCC BAA-1176 Streptococcus agalactiae COH1 ATCC BAA-1176 Gi01669 Genome incomplete Public J. Craig Venter Institute Rappuoli R rino_rappuoli@chiron.com SAN Medical, Human Pathogen 342616 15609 001531_GCAT 638341205 NZ_AAJR00000000 Draft Celera 8x Glimmer 2205 2483 35 Sanger USA Infected newborn with sepsis Infected newborn with sepsis Homo sapiens Blood Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Septicemia, Meningitis, Pneumonia Host 37 Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae BACTERIAL Streptococcus agalactiae H36B, ATCC BAA-1174 H36B, ATCC BAA-1174 Streptococcus agalactiae H36B ATCC BAA-1174 Gi01168 Genome incomplete Public J. Craig Venter Institute Rappuoli R rino_rappuoli@chiron.com SAI Human Pathogen, Medical 342615 15608 001532_GCAT 201526 638341206 NZ_AAJS00000000 Draft Celera 8x Glimmer 345 2201 2510 35 Sanger USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Septicemia, Meningitis, Pneumonia Host 37 Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus canis BACTERIAL Streptococcus canis FSL Z3-227 FSL Z3-227 Streptococcus canis FSL Z3-227 DSM 20715, ATCC 43496 Yes Gi01604 Genome incomplete Public Cornell Univ, 454 Life Sciences Stanhope MJ mjs297@cornell.edu Medical, Animal Pathogen 482234 21075 001533_GCAT 0 2235 0 0 USA Cow's milk in a case of mastitis Cow's milk in a case of mastitis Cow Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Septicemia, Mastitis, Necrotizing fasciitis Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus simiae 7213 7213 CCM 7213, LMG 22723 Gi01605 Genome incomplete Public Cornell Univ, 454 Life Sciences Stanhope MJ mjs297@cornell.edu 308354 001534_GCAT 137812 0 2587 0 0 USA Gastrointestinal tracts of South American squirrel monkeys Gastrointestinal tracts of South American squirrel monkeys Monkey Gastrointestinal tract Facultative Nonsporulating Mesophile gram+ Free living Clusters, Singles Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus equi BACTERIAL Streptococcus equi equi 4047 4047 Streptococcus equi Gc00971 Gi00606 Genome Complete and Published Public Sanger Institute, Univ of Newcastle, Univ of Cambridge The Home of Rest for Horses Parkhill J http://www.sanger.ac.uk/Users/parkhill/ SEQ 2009-03-27 PLoS Pathogen 5, E1000346 Medical, Animal Pathogen 553482 30765 001535_GCAT 159778 643692038 NC_012471 Complete Level 6: Finished 2253 2243 1 0 41 United Kingdom horse with strangles from New Forest, UK 1990 United Kingdom horse with strangles from New Forest, UK 50.875875 -1.632772 Horse Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Strangles Host 37 Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus gallolyticus NEM2135 NEM2135 Gi01038 Genome incomplete Public Institut Pasteur Trieu-Cuot P http://www.pasteur.fr/recherche/RAR/RAR2006/Bbpgp-en.html Biotechnological 315405 001536_GCAT 146836 0 0 0 0 France Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains None Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus iniae BACTERIAL Streptococcus iniae 9117 9117 Streptococcus iniae 9117 Gi01537 Genome incomplete Public BCM-HGSC Highlander, SK sarahh@bcm.tmc.edu Fish Pathogen, Medical, Human Pathogen 386894 16831 SRS000262 001538_GCAT 9117 0 28.1x 0 0 0 USA Human clinical isolate endemic, beta-hemolytic, non-Lancefield streptococcus Human clinical isolate Homo sapiens Patient Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Skin infection, Cellulitis, Meningitis Host Nonmotile Pathogen, Endemic, Beta-hemolytic Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis BACTERIAL Streptococcus mitis B6 B6 Gi00609 Genome incomplete Public AGOWA, Univ of Wuerzburg Hakenbeck R Medical, Human Pathogen 365659 001539_GCAT 105608 0 2140 0 40 Germany Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Endocarditis Host, Oral microflora Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis BACTERIAL Streptococcus mitis NCTC 12261 NCTC 12261 Streptococcus mitis NCTC 12261 NCTC 12261 Gi00610 Genome incomplete Public J. Craig Venter Institute NIH-NIDCR Banerjei LC banerjei@tigr.org Medical, Human Pathogen 246201 173 001540_GCAT 0 2200 0 40 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Endocarditis Host, Oral microflora Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus pneumoniae Gi00611 Genome incomplete Proprietary Genome Therapeutics Medical, Human Pathogen 1313 001541_GCAT 48329 0 Complete 0 0 40 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Pneumonia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae TIGR4 TIGR4 Streptococcus pneumoniae TIGR4 ATCC-BAA-334 Gi01670 Genome incomplete Public 454 Life Sciences 454 Life Sciences SpneT Medical, Human Pathogen 170187 13923 001542_GCAT 129051 638341207 NZ_AAGY00000000 Draft 2160 1913 39.7 454 USA Blood of a 30 year old male patient in Kongsvinger Norway Norway Blood of a 30 year old male patient in Kongsvinger Norway 60.19256 11.992046 Homo sapiens Male 30 years old Patient Blood Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Nasopharyngeal microflora, Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus pneumoniae serotype 6 serotype 6 Gi00614 Genome incomplete Public Univ of Alabama NIH-NIAID Contact http://genome.microbio.uab.edu/strep/info/contact.htm Medical, Human Pathogen 1313 001543_GCAT 88719 0 0 0 40 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Pneumonia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae 23F (Spanish 23F-1) 23F (Spanish 23F-1) Streptococcus pneumoniae 23F Gi00612 Genome incomplete Public Sanger Institute, Univ of Leicester, Univ of Glasgow Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical, Human Pathogen 216600 348 001544_GCAT 0 2200 0 40 United Kingdom Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Pneumonia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus pneumoniae INV104B (ST 227, serotype 1) INV104B (ST 227, serotype 1) Gi01087 Genome incomplete Public Sanger Institute, Univ of Leicester, Univ of Glasgow Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical, Human Pathogen 1313 001545_GCAT 88719 0 2200 0 40 United Kingdom Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Pneumonia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus pneumoniae INV200 (ST 9, serotype 14) INV200 (ST 9, serotype 14) Gi01088 Genome incomplete Public Sanger Institute, Univ of Leicester, Univ of Glasgow Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical, Human Pathogen 1313 001546_GCAT 88719 0 2200 0 40 United Kingdom Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Pneumonia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus pneumoniae OXC141 (ST 180, serotype 3) OXC141 (ST 180, serotype 3) Gi01089 Genome incomplete Public Sanger Institute, Univ of Leicester, Univ of Glasgow Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical, Human Pathogen 1313 001547_GCAT 88719 0 2200 0 40 United Kingdom Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Pneumonia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae 670-6B 670-6B 6B Streptococcus pneumoniae 670-6B Gi00613 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Medical, Human Pathogen 189423 292 001548_GCAT 0 2100 0 40 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Meningitis, Otitis media, Pneumonia Host, Nasopharyngeal microflora 30 - 35 Nonmotile Alpha-hemolytic, Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae SP3-BS71 SP3-BS71 3 Streptococcus pneumoniae SP3-BS71 Gi01657 Genome incomplete Public West Penn Allegheny Health System CGSSp Medical, Human Pathogen 406556 17957 001549_GCAT 255822 640963042 NZ_AAZZ00000000 Draft 24 2032 2421 39.8 454-GS20 USA Nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh USA Nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh Homo sapiens child Patient with pneumonia Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Host, Nasopharyngeal microflora Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae SP6-BS73 SP6-BS73 6 Streptococcus pneumoniae SP6-BS73 Gi01658 Genome incomplete Public West Penn Allegheny Health System CGSSp6BS73 Medical, Human Pathogen 406557 17959 001550_GCAT 232125 640963056 NZ_ABAA00000000 Draft Newbler GeneMark, GeneMark.hmm, Glimmer 2 38 2161 2555 39.6 USA Nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh USA Nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh Homo sapiens child Patient with pneumonia Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Pneumonia Host, Nasopharyngeal microflora Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae SP19-BS75 SP19-BS75 19 Streptococcus pneumoniae SP19-BS75 Gi01659 Genome incomplete Public West Penn Allegheny Health System CGSSp19BS75 Medical, Human Pathogen 406562 17969 001551_GCAT 245173 640963051 NZ_ABAF00000000 Draft Newbler GeneMark, GeneMark.hmm, Glimmer 2 30 2135 2520 39.6 USA Nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh USA Nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh Homo sapiens child Patient with pneumonia Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Host, Nasopharyngeal microflora Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae SP9-BS68 SP9-BS68 Streptococcus pneumoniae SP9-BS68 Gi01660 Genome incomplete Public West Penn Allegheny Health System CGSSp9BS68 Medical, Human Pathogen 406558 17961 001552_GCAT 250541 640963054 NZ_ABAB00000000 Draft Newbler GeneMark, GeneMark.hmm, Glimmer 2 61 2115 2484 39.6 USA Nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh USA Nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh Homo sapiens child Patient with pneumonia Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Host, Nasopharyngeal microflora Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae SP11-BS70 SP11-BS70 Streptococcus pneumoniae SP11-BS70 Gi01661 Genome incomplete Public West Penn Allegheny Health System CGSSp11BS70 Medical, Human Pathogen 406559 17963 001553_GCAT 253930 640963055 NZ_ABAC00000000 Draft Newbler GeneMark, GeneMark.hmm, Glimmer 2 25 2059 2405 39.7 USA Nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh USA Nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh Homo sapiens child Patient with pneumonia Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Pneumonia Host, Nasopharyngeal microflora Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae SP14-BS69 SP14-BS69 14 Streptococcus pneumoniae SP14-BS69 Gi01662 Genome incomplete Public West Penn Allegheny Health System CGSSp14BS69 Medical, Human Pathogen 406560 17965 001554_GCAT 247676 640963053 NZ_ABAD00000000 Draft Newbler GeneMark, GeneMark.hmm, Glimmer 2 49 2146 284 39.6 USA Nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh USA Nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh Homo sapiens child Patient with pneumonia Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Host, Nasopharyngeal microflora Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae SP18-BS74 SP18-BS74 Streptococcus pneumoniae SP18-BS74 Gi01663 Genome incomplete Public West Penn Allegheny Health System CGSSp Medical, Human Pathogen 406561 17967 001555_GCAT 240655 640963048 NZ_ABAE00000000 Draft Newbler GeneMark, GeneMark.hmm, Glimmer 2 28 2100 2453 39.7 USA Nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh USA Nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh Homo sapiens child Patient with pneumonia Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Host, Nasopharyngeal microflora Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae SP23-BS72 SP23-BS72 Streptococcus pneumoniae SP23-BS72 Gi01664 Genome incomplete Public West Penn Allegheny Health System CGSSp23BS72 Medical, Human Pathogen 406563 17971 001556_GCAT 239021 640963052 NZ_ABAG00000000 Draft Newbler GeneMark, GeneMark.hmm, Glimmer 2 32 2102 2451 39.7 454-GS20 USA Nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh USA Nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh Homo sapiens child Patient with pneumonia Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Host, Nasopharyngeal microflora Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes M49 591 M49 591 Streptococcus pyogenes M49 591 Gi00804 Genome incomplete Public Univ Hospital Rostock, Univ of Wuerzburg Podbielski A andreas.podbielski@med.uni-rostock.de SpyoM Medical, Human Pathogen 294934 13286 001558_GCAT 200420 638341208 NZ_AAFV00000000 Draft 1327 1406 38 Sanger Germany Patient with a skin infection Patient with a skin infection Homo sapiens Adult Patient with a skin infection Skin Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Rheumatic fever Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus salivarius BACTERIAL Streptococcus salivarius JIM8777 JIM8777 Streptococcus salivarius JIM8777 Gi01039 Genome incomplete Public INRA, Genoscope Wincker P pwincker@genoscope.cns.fr Medical 347253 15715 001559_GCAT 0 1800 0 0 France Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains None Host, Oral microflora Nonmotile Non-Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus salivarius BACTERIAL Streptococcus salivarius JIM8780 JIM8780 Streptococcus salivarius JIM8780 Gi01040 Genome incomplete Public INRA, Genoscope Wincker P pwincker@genoscope.cns.fr Medical 347254 15724 001560_GCAT 0 1800 0 0 France Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains None Host, Oral microflora Nonmotile Non-Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sobrinus BACTERIAL Streptococcus sobrinus 6715 6715 Streptococcus sobrinus 6715 Gi00617 Genome incomplete Public J. Craig Venter Institute NIH-NIDCR Nelson KE http://www.tigr.org/~kenelson/ Medical, Human Pathogen 246202 1420 001561_GCAT 70509 0 2200 0 0 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Endocarditis, Dental caries Host, Oral microflora 37 Nonmotile Acid-producing, Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis BACTERIAL Streptococcus suis P1/7 (ST1) P1/7 (ST1) ST1 Streptococcus suis P1/7 ATCC BAA-853 No Gc01061 Gi00619 Genome Complete and Published Public Univ of Warwick, Sanger Institute, Univ of Newcastle, Univ of Cambridge Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ SSU 2009-07-14 PLoS ONE 4, E6072 Animal Pathogen, Swine Pathogen, Medical, Human Pathogen 218494 32235 001562_GCAT 0 NC_012925 Complete Level 6: Finished 2.83.3Kb, 3.03.3Kb, 1025Kb, 1215Kb pUC18, pMAQ1b, pBACehr, pBACe3.6 8x Orpheus, Glimmer2, EasyGene 2007 2011 1 0 41 Sanger United Kingdom ante-mortem blood culture from a pig dying with meningitis 1976 Sus scrofa Blood Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Endocarditis, Meningitis, Septicemia, Arthritis Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis BACTERIAL Streptococcus suis BM407 (ST1) BM407 (ST1) Gc01062 Gi01370 Genome Complete and Published Public Sanger Institute, Univ of Cambridge, Univ of Montreal, Univ of Oxford Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ SSUBM407 2009-07-17 PLoS ONE 4, E6072 Animal Pathogen, Swine Pathogen, Medical, Human Pathogen 568814 32237 001563_GCAT 15522 0 NC_012926 Complete Level 6: Finished 223282 454, 1769043 lllumina 5x Sanger, 11x 454, 20x Illumina Orpheus, Glimmer2, EasyGene 2146 2118 1 1 40 454-GS20, Sanger, Illumina United Kingdom CSF from a human case of meningitis in Ho Chi Minh City, Vietnam in 2004 2004 Vietnam Ho Chi Minh City, Vietnam 10.75918 106.662498 Homo sapiens Patient with meningitis Brain Cerebro-spinal fluid Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Endocarditis, Meningitis, Septicemia, Arthritis Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis BACTERIAL Streptococcus suis SC84 (ST7) SC84 (ST7) Gc01063 Gi01371 Genome Complete and Published Public Sanger Institute, Univ of Cambridge, Univ of Montreal, Univ of Oxford Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ SSUSC84 2009-07-17 PLoS Genetics 4, E6072 Animal Pathogen, Swine Pathogen, Medical, Human Pathogen 568813 32239 001564_GCAT 15522 0 NC_012924 Complete Level 6: Finished 399145 454, 32,016,513 Illumina 5x Sanger, 19x 454, 190x Illumina Orpheus, Glimmer2, EasyGene 2095 2068 1 0 40 454-FLX, Illumina, Sanger United Kingdom case of streptococcal toxic shock-like syndrome in Sichuan Province, China in 2005 2005 China Homo sapiens Patient with streptococcal toxic shock-like syndrome Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Septicemia, Meningitis, Endocarditis, Arthritis Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis BACTERIAL Streptococcus suis 89/1591 89/1591 Streptococcus suis 89/1591 Gi00618 Genome Permanent Draft Public Univ of Montreal, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org SsuiDRAFT Animal Pathogen, Swine Pathogen, Medical, Human Pathogen 286604 12417 001565_GCAT 144643 638341209 NZ_AAFA00000000 Complete Level 1: Standard Draft 1980 1960 41 Sanger USA North America North America Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Septicemia, Meningitis, Endocarditis, Arthritis Host 37 Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis BACTERIAL Streptococcus suis 05HAH33 05HAH33 Streptococcus suis 05HAH33 Gi01542 Genome incomplete Public Beijing Institute of Genomics Animal Pathogen, Swine Pathogen, Medical, Human Pathogen 391297 17157 001566_GCAT 0 0 0 0 China Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Endocarditis, Meningitis, Septicemia, Arthritis Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis BACTERIAL Streptococcus suis GZ1 GZ1 Streptococcus suis GZ1 Gi01897 Genome incomplete Public Chinese CDC Human Pathogen, Medical, Swine Pathogen, Animal Pathogen 423211 18737 001569_GCAT 0 0 0 0 China Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Pneumonia, Meningitis, Arthritis Host 37 Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus uberis BACTERIAL Streptococcus uberis 0140J 0140J Streptococcus uberis 0140J ATCC BAA-854 No Gc00948 Gi00625 Genome Complete and Published Public Univ of Warwick, Sanger Institute, Univ of Newcastle, Univ of Cambridge Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ SUB 2009-01-28 BMC Genomics 10, :54 Animal Pathogen, Cattle Pathogen, Medical 218495 353 001571_GCAT 643348578 NC_012004 Complete 1852 1760 1 0 40 United Kingdom clinical bovine mastitis case 1972 clinical bovine mastitis case Bovine Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Mastitis Host 37 Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus equi BACTERIAL Streptococcus equi zooepidemicus H70 H70 Gc00970 Gi00607 Genome Complete and Published Public Sanger Institute, Animal Health Trust, Univ of Cambridge HBLB Parkhill J SZO 2009-03-27 PLoS Pathogen 5, E1000346 Swine Pathogen, Medical, Cattle Pathogen, Animal Pathogen 40041 30767 001572_GCAT 105978 643692039 NC_012470 Complete Level 6: Finished 2149 2058 1 0 41 United Kingdom Nasal swab taken from a healthy Thoroughbred racehorse from Newmarket, UK 2000 United Kingdom Newmarket, UK 52.245212 0.403362 Horse Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Opportunistic infection Host 37 Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces ambofaciens BACTERIAL Streptomyces ambofaciens ATCC 23877 ATCC 23877 Streptomyces ambofaciens ATCC 23877 ATCC 23877 Yes Gi00626 Genome incomplete Public Genoscope Biotechnological, Antibiotic production 278992 93 001573_GCAT 0 8000 0 72 France wild-type wild-type Aerobe Filament-shaped Sporulating Mesophile gram+ Free living None Soil 25 - 35 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces BACTERIAL Streptomyces venezuelae Gi00627 Genome complete Proprietary Celera Genomics, Diversa Diversa Biotechnological, Antibiotic production 54571 001574_GCAT 156465 0 Complete 0 0 0 USA Aerobe Filament-shaped Sporulating Mesophile gram+ Free living None Soil Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces BACTERIAL Streptomyces scabies 87-22 87-22 Streptomyces scabiei Gi00630 Genome incomplete Public Sanger Institute, Cornell Univ NSF, USDA Loria R rl21@cornell.edu Antibiotic production, Agricultural, Medical, Biotechnological, Plant Pathogen 1930 12985 001575_GCAT 104999 0 8100 0 0 USA Aerobe Filament-shaped Sporulating Mesophile gram+ Free living Scab disease Soil 28 Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces noursei BACTERIAL Streptomyces noursei ATCC 11455 ATCC 11455 ATCC 11455 Gi00628 Genome incomplete Proprietary QIAGEN, Norwegian Univ of Science and Technology QIAGEN Zotchev SB http://www.biotech.ntnu.no/molgen/members2/sergey.html Nystatin producer, Biotechnological, Antibiotic production 316284 001576_GCAT 0 0 0 0 Germany Aerobe Filament-shaped Sporulating Mesophile gram+ Free living None Soil Nonmotile Nystatin producer Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces peucetius BACTERIAL Streptomyces peucetius ATCC 27952 ATCC 27952 Streptomyces peucetius ATCC 27952 ATCC 27952 No Gi00629 Genome incomplete Public Gene Chem Inc., IBR, Sunmoon Univ MIC Antibiotic production, Biotechnological 316280 13658 001577_GCAT 0 0 0 0 Korea Aerobe Filament-shaped Sporulating Mesophile gram+ Free living None Soil Nonmotile Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Sulfitobacter BACTERIAL Sulfitobacter sp. EE-36 EE-36 Sulfitobacter sp. EE-36 Gi00888 Genome incomplete Public Univ of Georgia, J. Craig Venter Institute Moore Foundation Moran MA http://alpha.marsci.uga.edu/directory/mmoran.htm EE Marine Microbial Initiative (MMI), Environmental 52598 13501 001579_GCAT 5638 638341211 NZ_AALV00000000 Draft 3547 3587 61 Sanger USA Surface waters of coastal Georgia USA "Coastal Georgia, USA" Surface waters Aerobe Rod-shaped Mesophile gram- Free living None Marine, Surface water Motile Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Sulfitobacter Sulfitobacter sp. NAS-14.1 BACTERIAL Sulfitobacter sp. NAS-14.1 NAS-14.1 Sulfitobacter sp. NAS-14.1 Gi00889 Genome incomplete Public Univ of Georgia, J. Craig Venter Institute Moore Foundation Moran MA http://alpha.marsci.uga.edu/directory/mmoran.htm NAS Marine Microbial Initiative (MMI), Environmental 314267 13591 001580_GCAT 149575 638341212 NZ_AALZ00000000 Draft 4003 4070 61 Sanger USA Surface waters of the North Atlantic Ocean North Atlantic Ocean (33? 3N/74? 3W) Surface waters Aerobe Rod-shaped Mesophile gram- Free living None Surface water, Marine Motile Bacteria Aquificae Aquificae (class) Aquificales Hydrogenothermaceae Sulfurihydrogenibium Sulfurihydrogenibium azorense BACTERIAL Sulfurihydrogenibium azorense Az-Fu1 Az-Fu1 Sulfurihydrogenibium azorense Az-Fu1 JCM 12773, OCM 840 Gc00937 Gi00634 Genome Complete and Published Public Portland State Univ, J. Craig Venter Institute NSF Reysenbach AL reysenbacha@pdx.edu 2009-03-25 J. Bacteriology 191, 1992-1993 Biotechnological 204536 12529 001581_GCAT 71370 643692050 NC_012438 Complete Level 6: Finished 1640 17125 1 0 32 USA Terrestrial hot spring from Furnas, Azores Portugal Azores Terrestrial hot spring from Furnas, Azores Portugal 37.765221 -25.30756 Facultative Rod-shaped Nonsporulating Thermophile gram- Free living Filaments, Pairs, Singles None Soil Motile Sulfur oxidizer Heterotroph Bacteria Aquificae Aquificae (class) Aquificales Hydrogenothermaceae Sulfurihydrogenibium Sulfurihydrogenibium sp. YO3AOP1 BACTERIAL Sulfurihydrogenibium sp. YO3AOP1 YO3AOP1 Sulfurihydrogenibium sp. YO3AOP1 Gc00808 Gi01984 Genome Complete and Published Public DOE Joint Genome Institute Mead D dmead@lucigen.com SYO3AOP1 2008-05-21 J. Bacteriology 191, 1992-3 Biotechnological 436114 18889 002611_GCAT 289247 642555165 NC_010730 Complete 1838 1823 1 0 32 USA Soil from Obsidian Pool in Yellowstone National Park, USA USA Obsidian Pool in Yellowstone National Park 44.636707 -110.438919 Facultative Rod-shaped Thermophile gram- Free living None Soil Motile Sulfur oxidizer, Acidophile Heterotroph, Chemolithoautotroph Bacteria Aquificae Aquificae (class) Aquificales Hydrogenothermaceae Sulfurihydrogenibium Sulfurihydrogenibium yellowstonense BACTERIAL Sulfurihydrogenibium yellowstonense SS-5 SS-5 Sulfurihydrogenibium yellowstonense SS-5 Gi01958 Genome incomplete Public Portland State Univ, J. Craig Venter Institute NSF Reysenbach AL reysenbacha@pdx.edu Biotechnological 432331 19071 002584_GCAT 138074 0 NZ_ABZS00000000 Draft 3x 228 1534 1708 32 USA Calcite Hot Springs in Yellowstone National Park Reysenbach lab (reysenbacha@pdx.edu) USA Calcite Hot Springs in Yellowstone National Park 44.376262 -110.690383 Facultative Rod-shaped Nonsporulating Thermophile gram- Free living None Fresh water, Hot spring 70 Motile Sulfur oxidizer Heterotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XVIII. Incertae Sedis Symbiobacterium BACTERIAL Symbiobacterium toebii Symbiobacterium toebii Gi00636 Genome incomplete Public KRIBB, Dragon Genomics MOST Moon-Hee S smoonhee@kribb.re.kr Biotechnological 120580 15726 001583_GCAT 44578 0 Complete 3474 3942 0 Korea Hay compost in Korea Korea Hay compost in Korea Microaerophilic Rod-shaped Nonsporulating Thermophile gram+ Free living None 60 Nonmotile Symbiotic Heterotroph Bacteria Cyanobacteria Chroococcales Synechococcus BACTERIAL Synechococcus sp. PCC 7002 PCC 7002 PCC 7002, ATCC 27264 Gc00746 Gi00640 Genome Complete and Published Public Penn State Univ, Beijing Univ Zhao J jzhao@pku.edu.cn SYNPCC7002 2008-03-14 Unpublished Ocean carbon cycle, Biotechnological 32049 28247 001584_GCAT 17081 641522654 NC_010475 Complete 3008 2823 1 6 49 China 1961 from a mud sample that came from the fish pens from Magueyes Island in Puerto Rico 1961 Puerto Rico Magueyes Island in Puerto Rico 17.972949 -67.047164 Facultative Coccus-shaped Mesophile 1.5 - 2.5 um gram- Free living None Mud, Marine 38 Motile Photoautotroph, Photosynthetic Bacteria Cyanobacteria Chroococcales Synechococcus BACTERIAL Synechococcus sp WH7805 WH7805 Synechococcus sp. WH 7805 Gi00890 Genome incomplete Public Univ of Warwick, J. Craig Venter Institute Moore Foundation Scanlan DJ http://www.bio.warwick.ac.uk/res/frame.asp?ID=60 WH Environmental, Marine Microbial Initiative (MMI) 59931 13553 001587_GCAT 152399 638341215 NZ_AAOK00000000 Draft 2607 2981 57.6 Sanger USA 33N/67W 33.75 -67.5 Facultative Coccus-shaped Mesophile gram- Free living None Marine Motile Photoautotroph Bacteria Cyanobacteria Chroococcales Synechococcus BACTERIAL Synechococcus sp WH5701 WH5701 Synechococcus sp. WH 5701 Gi00891 Genome incomplete Public Univ of Warwick, J. Craig Venter Institute Moore Foundation Scanlan DJ http://www.bio.warwick.ac.uk/res/frame.asp?ID=60 WH Marine Microbial Initiative (MMI), Environmental 69042 13554 001588_GCAT 82788 638341214 NZ_AANO00000000 Draft 3006 3450 65.4 Sanger USA Long Island Sound Long Island Sound 41.058085 -72.8656045 Facultative Coccus-shaped Mesophile gram- Free living None Marine Motile Photoautotroph Bacteria Cyanobacteria Chroococcales Synechococcus Synechococcus sp. RS9917 BACTERIAL Synechococcus sp RS9917 (= RCC556) RS9917 (= RCC556) Synechococcus sp. RS9917 Gi00892 Genome incomplete Public Univ of Warwick, J. Craig Venter Institute Moore Foundation Scanlan DJ http://www.bio.warwick.ac.uk/res/frame.asp?ID=60 RS Environmental, Marine Microbial Initiative (MMI) 221360 13555 001589_GCAT 638341213 NZ_AANP00000000 Draft 2538 2864 64.5 Sanger USA Eliat in the Red Sea at a depth of 10m Israel station A, Eilat, Red Sea 29.46667 34.91667 10 meters Facultative Coccus-shaped Mesophile gram- Free living None Marine, Fresh water Motile Photoautotroph Bacteria Cyanobacteria Chroococcales Synechococcus Synechococcus sp. RS9916 BACTERIAL Synechococcus sp RS9916 (= RCC555) RS9916 (= RCC555) Synechococcus sp. RS9916 Gi00893 Genome incomplete Public Univ of Warwick, J. Craig Venter Institute Moore Foundation Scanlan DJ http://www.bio.warwick.ac.uk/res/frame.asp?ID=60 RS Marine Microbial Initiative (MMI), Environmental 221359 13557 001590_GCAT 85989 639857007 NZ_AAUA00000000 Draft 2661 3052 59.8 Sanger USA Eliat Red Sea at a depth of 10 meters Israel station A, Eilat, Red Sea 29.46667 34.91667 10 meters Facultative Coccus-shaped Mesophile gram- Free living None Red Sea, Marine Motile Photoautotroph Bacteria Cyanobacteria Chroococcales Synechococcus BACTERIAL Synechococcus sp MITS9220 MITS9220 Synechococcus sp. MIT S9220 Gi00894 Genome incomplete Public Univ of Warwick, J. Craig Venter Institute Moore Foundation Scanlan DJ http://www.bio.warwick.ac.uk/res/frame.asp?ID=60 Environmental, Marine Microbial Initiative (MMI) 166309 19375 001591_GCAT 0 2500 0 0 USA Tropical Atlantic at a depth of 105m Equatorial Pacific 0 -140 105 meters Facultative Coccus-shaped Mesophile gram- Free living None Marine Motile Photoautotroph Bacteria Cyanobacteria Chroococcales Synechococcus Synechococcus sp. BL107 BACTERIAL Synechococcus sp BL107 BL107 Synechococcus sp. BL107 Gi00895 Genome incomplete Public Univ of Warwick, J. Craig Venter Institute Moore Foundation Scanlan DJ http://www.bio.warwick.ac.uk/res/frame.asp?ID=60 BL Environmental, Marine Microbial Initiative (MMI) 313625 13559 001592_GCAT 639857006 NZ_AATZ00000000 Draft 2283 2596 55 Sanger USA Blanes Bay in the Mediterranean Sea at a depth of 100m Blanes Bay in the Mediterranean Sea at a depth of 100m 41.666667 2.8 100+ m Facultative Coccus-shaped Mesophile gram- Free living None Marine Motile Photoautotroph Bacteria Firmicutes Clostridia Clostridiales Syntrophomonadaceae Syntrophomonas BACTERIAL Syntrophomonas zehnderi OL-4 OL-4 JCM 13948, DSM 17840 Yes Gi01747 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 404335 001595_GCAT 182845 0 0 0 0 USA Sludge bed reactor Sludge bed reactor Anaerobe Mesophile gram+ Syntrophic Methanobacterium formicicum None Syntrophic Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Pelotomaculum BACTERIAL Pelotomaculum schinkii HH HH ATCC BAA-615, DSM 15200 Yes Gi01748 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 78350 001596_GCAT 13662 0 0 0 0 USA Anaerobic sludge bed reactor Anaerobic sludge bed reactor Anaerobe Sporulating Mesophile gram+ "Syntrophic," Methanospirillum hungatei None Propionate-oxidizing Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Polaribacter BACTERIAL Polaribacter dokdonensis MED152 MED152 Polaribacter sp. MED152 Gi00896 Genome incomplete Public Kalmar Univ, J. Craig Venter Institute Moore Foundation Pinhassi J http://halia.hik.se/start.jsp?page=members/jarone%20pinhassi MED Environmental, Marine Microbial Initiative (MMI) 313598 13543 001597_GCAT 638341218 NZ_AANA00000000 Draft 2956 2759 31 Sanger USA NW Mediterranean Sea from a sample taken at a depth of 1m NW Mediterranean Sea from a sample taken at a depth of 1m 41.66667 2.80000 1 meter Aerobe Rod-shaped Mesophile gram- Free living None Marine Motile Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Teredinibacter Teredinibacter turnerae BACTERIAL Teredinibacter turnerae T7901 T7901 ATCC 39867, DSM 15152 Yes Gc01045 Gi01476 Genome Complete and Published Public Univ of Maine, J. Craig Venter Institute NSF Distel DL distel@oglf.org http://www.umaine.edu/meem/faculty/distel.htm TERTU 2009-07-23 PLoS ONE 4, e6085 Biofuels, Biotechnological 377629 30839 001598_GCAT 71026 0 NC_012997 Complete Level 6: Finished 3-4Kb, 8-10Kb, 33-39Kb 158697 Celera assembler 21.2x Glimmer 5193 4310 1 0 50.8 454-GS20, Sanger USA Gill tissue of a wood-boring mollusc Lyrodus pedicellatus shipworm Bankia gouldi collected from the Newport River Estuary, Beaufort North Carolina in 1979 1979 USA Gill tissue of a wood-boring mollusc Lyrodus pedicellatus 34.726186 -76.647763 Lyrodus pedicellatus Rod-shaped Mesophile gram- Symbiotic Lyrodus pedicellatus None Endosymbiont, Host Motile Dinitrogen-fixing, Cellulose degrader Chemoheterotroph Bacteria Proteobacteria Betaproteobacteria Rhodocyclales Rhodocyclaceae Thauera Thauera sp. MZ1T BACTERIAL Thauera sp. MZ1T MZ1T Thauera sp. MZ1T Gc00901 Gi01570 Genome Complete and Published Public DOE Joint Genome Institute DOE Sayler GS Sayler@utk.edu Tmz 2009-05-14 Unpublished Biotechnological, Environmental, Ecological 85643 20091 001599_GCAT 6758 643692051 NC_011662 Complete Level 6: Finished 2621 4165 1 1 68 USA Wastewater treatment plant Wastewater treatment plant Facultative Rod-shaped Mesophile gram- Free living None Fresh water, Wastewater Motile Carbon sequestration Chemolithoautotroph Bacteria Firmicutes Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter pseudethanolicus BACTERIAL Thermoanaerobacter pseudoethanolicus 39E 39E Thermoanaerobacter pseudethanolicus ATCC 33223 DSM 2355, ATCC 33223 Yes Gc00718 Gi00653 Genome Complete and Published Public DOE Joint Genome Institute DOE Fields M matthew.fields@erc.montana.edu Teth39 2008-02-05 Unpublished Bioenergy, Bioenergy, Biotechnological, Energy production, Ethanol production 340099 13901 001600_GCAT 259586 641522655 NC_010321 Complete 2362 2427 1 0 34.5 Sanger, 454 USA Thermal springs in Yellowstone National Park USA Yellowstone National Park 44.376262 -110.690383 Anaerobe Rod-shaped Sporulating Thermophile gram+ Free living None Fresh water, Hot spring 65 Sugars fermentor Motile Iron reducer, Ethanol production Bacteria Firmicutes Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter sp. X513 BACTERIAL Thermoanaerobacter sp. X513 X513 Thermoanaerobacter ethanolicus X513 Gi01523 Genome incomplete Public DOE Joint Genome Institute DOE Hemme CL hemmecl@ou.edu Biotechnological 573062 32613 001601_GCAT 169356 0 NZ_ACPF00000000 Draft 11x Prodigal 2373 2612 34 Sanger USA "Deep subsurface location at the Piceance Basin, Colorado, USA" isolated by anaerobic enrichment culture USA Deep subsurface location at the Piceance Basin, Colorado, USA 2000 m Anaerobe Rod-shaped Sporulating Thermophile gram+ Free living None Fresh water 60 Motile Bacteria Proteobacteria Gammaproteobacteria Chromatiales Chromatiaceae Thermochromatium Thermochromatium tepidum BACTERIAL Thermochromatium tepidum MC ATCC 43061 MC ATCC 43061 Thermochromatium tepidum ATCC 43061 ATCC 43061 Gi00655 Genome incomplete Proprietary Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Biotechnological 316276 13652 001602_GCAT 7512 0 3295 3375 0 USA Hot sulfur spring in Yellowstone National Park USA Hot sulfur spring in Yellowstone National Park 44.376262 -110.690383 Anaerobe Rod-shaped Nonsporulating Thermophile 1-2 um 2.8-3.2 um Red gram- Free living None Hot spring, Fresh water 50 Motile Nitrogen fixation, Green sulfur Photosynthetic Bacteria Thermodesulfobacteria Thermodesulfobacteria (class) Thermodesulfobacteriales Thermodesulfobacteriaceae Thermodesulfobacterium Thermodesulfobacterium commune BACTERIAL Thermodesulfobacterium commune DSM 2178 DSM 2178 Thermodesulfobacterium commune DSM 2178 DSM 2178 Gi00737 Genome incomplete Public J. Craig Venter Institute NSF Evolutionary 289377 12531 001603_GCAT 38674 0 Complete 0 0 0 USA Anaerobe Rod-shaped Thermophile gram- Free living None Fresh water 70 Nonmotile Bacteria Nitrospirae Nitrospira (class) Nitrospirales Nitrospiraceae Thermodesulfovibrio Thermodesulfovibrio yellowstonii BACTERIAL Thermodesulfovibrio yellowstonii DSM 11347 DSM 11347 Thermodesulfovibrio yellowstonii DSM 11347 ATCC 51303, DSM 11347 Yes Gc00864 Gi00736 Genome Complete and Published Public J. Craig Venter Institute NSF Sutton G 2008-09-26 Unpublished Evolutionary 289376 30733 001604_GCAT 320868 643348581 NC_011296 Complete 2003 2033 1 0 34 USA Thermal vent in Yellowstone Lake in Wyoming USA Thermal vent in Yellowstone Lake in Wyoming 44.453591 -110.358796 Curved-shaped Nonsporulating Thermophile gram- Free living None Fresh water 65 Motile Sulfate reducer Bacteria Firmicutes Thermolithobacteria Thermolithobacterales Thermolithobacteraceae Thermolithobacter BACTERIAL Thermolithobacter ferrireducens JW/KA-2 JW/KA-2 ATCC 700985 Yes Gi01568 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Bioremediation 416555 001605_GCAT 0 0 0 0 USA Yellowstone National Park on 1999 1999 USA Yellowstone National Park on 1999 44.376262 -110.690383 Anaerobe Thermophile gram+ Free living None Soil 70 Iron reducer Autotroph, Chemolithoautotroph Bacteria Chloroflexi Thermomicrobia (class) Thermomicrobiales Thermomicrobiaceae Thermomicrobium Thermomicrobium roseum BACTERIAL Thermomicrobium roseum DSM 5159 DSM 5159 Thermomicrobium roseum DSM 5159 DSM 5159, ATCC 27502 Yes Gc00949 Gi00735 Genome Complete and Published Public J. Craig Venter Institute NSF Eisen J jaeisen@ucdavis.edu trd 2009-01-16 PLoS ONE 4, e4207 Tree of Life, Evolutionary 309801 32569 001606_GCAT 0 NC_011959 Complete 0.5Kb, 1.5-3.5Kb, 8-14Kb 9.7x Glimmer 2006 1925 1 1 63.6 USA Toadstool Spring in Yellowstone National Park USA Toadstool Spring in Yellowstone National Park 44.376262 -110.690383 Aerobe Rod-shaped Nonsporulating Thermophile gram- Free living Singles, Pairs None 70 Nonmotile Bacteria Thermotogae Thermotogae (class) Thermotogales Thermotogaceae Thermotoga Thermotoga neapolitana BACTERIAL Thermotoga neapolitana DSM 4359 DSM 4359 Thermotoga neapolitana DSM 4359 DSM4359, ATCC 49045 Yes Gi00657 Genome incomplete Public J. Craig Venter Institute DOE Biotechnological, Hydrogen production, Energy production 309803 12534 001607_GCAT 41353 0 1800 0 0 USA Black smoker in the bay near Naples Italy in 1986 1986 Italy Black smoker in the bay near Naples Italy in 1986 40.840097 14.251636 Anaerobe Rod-shaped Nonsporulating Hyperthermophile gram- Free living None Fresh water 70-75 Motile Sulfur reducer, Piezophile Heterotroph Bacteria Thermotogae Thermotogae (class) Thermotogales Thermotogaceae Thermotoga Thermotoga neapolitana BACTERIAL Thermotoga neapolitana DSM 4359 DSM 4359 Thermotoga neapolitana DSM 4359 DSM4359, ATCC 49045, KCCM 41025 Yes Gc00944 Gi02531 Genome Complete and Published Public Genotech corp. CTN 2009-01-27 Unpublished Energy production, Hydrogen production, Biotechnological 309803 21023 003257_GCAT 41353 643348584 NC_011978 Complete 1884 1988 1 0 46 Korea Black smoker in the bay near Naples Italy in 1986 1986 Italy Black smoker in the bay near Naples Italy in 1986 40.840097 14.251636 Anaerobe Rod-shaped Nonsporulating Hyperthermophile gram- Free living None Fresh water 70-75 Motile Sulfur reducer, Piezophile Heterotroph Bacteria Thermotogae Thermotogae (class) Thermotogales Thermotogaceae Thermotoga Thermotoga sp. RQ2 BACTERIAL Thermotoga sp. RQ2 RQ2 Thermotoga sp. RQ2 Gc00749 Gi01985 Genome Complete and Published Public DOE Joint Genome Institute DOE Noll K kenneth.noll@uconn.edu TRQ2 2008-03-18 Unpublished Evolutionary, Biotechnological 126740 19543 002612_GCAT 114683 642487181 NC_010483 Complete 1877 1917 1 0 46 USA Geothermally heated seafloor in the Azores Azores Azores Anaerobe Rod-shaped Nonsporulating Hyperthermophile gram- Free living None Fresh water 76 - 82 Motile Heterotroph Bacteria Thermotogae Thermotogae (class) Thermotogales Thermotogaceae Thermotoga Thermotoga naphthophila BACTERIAL Thermotoga naphthophila RKU-10 RKU-10 Thermotoga naphthophila RKU-10 JCM 10882, DSM 13996 Yes Gi02015 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Evolutionary, Biotechnological 590168 33663 002644_GCAT 46327 0 NZ_ACXW00000000 Draft 23 1797 1868 46.1 454-FLX USA Production fluid of the Kubiki oil reservoir in Niigata Japan Japan Production fluid of the Kubiki oil reservoir in Niigata Japan 37.916192 139.036413 Anaerobe Rod-shaped Nonsporulating Thermophile gram- Free living None Fresh water 80 Motile Heterotroph Bacteria Bacteroidetes BACTERIAL Flavobacteria sp. MS190-1F MS190-1F Gi02018 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Environmental 117743 002647_GCAT 0 0 0 0 USA Aerobe Rod-shaped Mesophile gram- Free living None Fresh water Motile Heterotroph Bacteria Bacteroidetes BACTERIAL Flavobacteria sp. MS220-5C MS220-5C Gi02019 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Environmental 117743 002648_GCAT 0 0 0 0 USA Aerobe Rod-shaped Mesophile gram- Free living None Fresh water Motile Heterotroph Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus buchneri BACTERIAL Lactobacillus buchneri NRRL B-30929 NRRL B-30929 NRRL B-30929 Gi02021 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Biofuels, Bioenergy, Ethanol production 511437 29003 002650_GCAT 0 In progress 0 0 0 USA Fuel ethanol production facility Fuel ethanol production facility Facultative Rod-shaped Mesophile gram+ Free living Chains None Host, Intestinal microflora Nonmotile Probiotic Bacteria Thermotogae Thermotogae (class) Thermotogales Thermotogaceae Thermosipho Thermosipho africanus BACTERIAL Thermosipho africanus TCF52B TCF52B Thermosipho africanus TCF52B Gc00896 Gi01046 Genome Complete and Published Public Genome Canada, Dalhousie Univ Nesbo CL nesbo@ualberta.ca http://doolittle.biochem.dal.ca/ 2008-12-10 J. Bacteriology 191, 1974-8 Evolutionary, Biotechnological 484019 27767 001611_GCAT 239462 643348583 NC_011653 Complete 2016 1911 1 0 30 Canada Troll oil formation in the North Sea Troll oil formation in the North Sea Anaerobe Rod-shaped Thermophile gram- Free living Pairs, Singles None Fresh water 75 Bacteria Deinococcus-Thermus Deinococci Thermales Thermaceae Thermus BACTERIAL Thermus thermophilus Gi00658 Genome incomplete Proprietary Thermogene Biotechnological 274 001612_GCAT 35173 0 0 0 0 USA Thermal vent in Japan Japan Thermal vent in Japan Aerobe Thermophile Free living None 85 Nonmotile Bacteria Proteobacteria Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Thioalkalivibrio Thioalkalivibrio sp. HL-EbGR7 BACTERIAL Thioalkalivibrio sp HL-EbGR7 HL-EbGR7 Thioalkalivibrio sp. HL-EbGR7 Gc00934 Gi01555 Genome Complete and Published Public DOE Joint Genome Institute DOE Muyzer G g.muyzer@tnw.tudelft.nl Tgr7 2009-01-13 Unpublished Environmental, Biotechnological 396588 29177 001613_GCAT 349593 643348585 NC_011901 Complete 3464 3283 1 0 65 USA Sulfide-oxidizing bioreactor Sulfide-oxidizing bioreactor Facultative Rod-shaped Nonsporulating Mesophile gram- Free living None Fresh water Motile Sulfur oxidizer, Alkalophile Chemolithoautotroph Bacteria Proteobacteria Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Thioalkalivibrio Thioalkalivibrio sp. K90mix BACTERIAL Thioalkalivibrio sp K90mix K90mix Thioalkalivibrio sp. K90mix Gi01556 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Environmental, Biotechnological 396595 30759 001614_GCAT 643886122 NZ_ACIU00000000 Draft 11 2980 2954 65 USA Soda lake sediment Soda lake sediment Facultative Rod-shaped Nonsporulating Mesophile Halotolerant gram- Free living None Motile Sulfur oxidizer, Alkalophile Chemolithoautotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales BACTERIAL Thiomonas sp. Gi00788 Genome incomplete Public Genoscope Barbe V vbarbe@genoscope.cns.fr Biotechnological 32012 001615_GCAT 138795 0 5000 0 0 France Mesophile gram- Free living None Detoxification, Arsenic metabolizer Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema BACTERIAL Treponema primitia ZAS-1 ZAS-1 Gi01248 Genome incomplete Public J. Craig Venter Institute, CalTech NSF Leadbetter J http://www.its.caltech.edu/~jaredl/ Energy production, Biotechnological 88058 001616_GCAT 4009 0 0 0 60 USA Gut Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Symbiotic Zootermopsis angusticollis Singles None Host, Termite gut Motile Hydrogen metabolizer, Dinitrogen-fixing, Acetogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema Treponema azotonutricium BACTERIAL Treponema azotonutricium ZAS-9 ZAS-9 Treponema azotonutricium ZAS-9 Gi01249 Genome incomplete Public J. Craig Venter Institute, CalTech NSF Leadbetter J http://www.its.caltech.edu/~jaredl/ Energy production, Biotechnological 545695 30191 001617_GCAT 23660 0 0 0 60 USA hindgut of the Pacific dampwood termite Zootermopsis angusticollis hindgut of the Pacific dampwood termite Zootermopsis angusticollis Termite Gastrointestinal tract Gut Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Symbiotic Zootermopsis angusticollis Singles None Host, Termite gut Motile Hydrogen metabolizer, Dinitrogen-fixing, Acetogen Bacteria Cyanobacteria Oscillatoriales Trichodesmium Trichodesmium thiebautii BACTERIAL Trichodesmium thiebautii II-3 II-3 Trichodesmium thiebautii II-3 Gi00897 Genome incomplete Public J. Craig Venter Institute, Woods Hole Oceanographic Institute Moore Foundation Waterbury JB http://www.whoi.edu/scitech/staff.jsp?id=4 Marine Microbial Initiative (MMI), Environmental 306282 13552 001618_GCAT 0 8000 0 0 USA Western subtropical Atlantic surface waters near Bermuda in 1999 1999 Western subtropical Atlantic surface waters near Bermuda in 1999 Aerobe Filament-shaped Mesophile gram- Free living None Surface water, Marine Motile Diazotroph Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus BACTERIAL Bacillus selenitireducens MLMS-1 MLMS-1 Gi00970 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bioremediation, Environmental, Biotechnological 85683 001619_GCAT 14501 0 3000 0 0 USA Alkaline hypersaline arsenic-rich mud from Mono Lake California USA Alkaline hypersaline arsenic-rich mud from Mono Lake California 37.986853 -119.045711 Mesophile gram+ Free living None Mud Carbon dioxide fixation, Arsenic metabolizer Bacteria Bacteroidetes Flavobacteria BACTERIAL Flavobacteria sp BBFL7 BBFL7 Flavobacteria bacterium BBFL7 Gi00898 Genome incomplete Public Scripps Institute of Oceanography, J. Craig Venter Institute Moore Foundation Azam http://siodev.ucsd.edu/rab/act_detail.cfm?state=%25%29%3EK%2DTLL%20%0A BBFL Marine Microbial Initiative (MMI), Environmental 156586 13604 001620_GCAT 42542 638341093 NZ_AAPD00000000 Draft 3083 2653 35 Sanger USA SIO pier water SIO pier water 32.85000 -117.25000 Surface Aerobe Rod-shaped Mesophile gram- Free living None Marine Motile Heterotroph Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacterales bacterium HTCC2654 BACTERIAL Rhodobacterales sp HTCC2654 HTCC2654 Rhodobacterales bacterium HTCC2654 HTCC2654 Gi00899 Genome incomplete Public Oregon State Univ, J. Craig Venter Institute Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm RB Marine Microbial Initiative (MMI), Environmental 314271 13614 001621_GCAT 638341172 NZ_AAMT00000000 Draft 4529 4804 65 Sanger USA Sargasso Sea at the BATS station at a depth of 10m "Sargasso Sea, Atlantic Ocean, BATS" 10 meters Mesophile gram- Free living None Marine Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacterales bacterium HTCC2083 BACTERIAL Rhodobacterales sp HTCC2083 HTCC2083 Rhodobacterales bacterium HTCC2083 HTCC2083 Gi00901 Genome incomplete Public Oregon State Univ, J. Craig Venter Institute Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm Marine Microbial Initiative (MMI), Environmental 314270 13508 001623_GCAT 0 NZ_ABXE00000000 Draft 20 4015 4220 53 USA Coastal region near Newport Oregon at a depth of 10m USA "Coastal Pacific Ocean, Newport, Oregon" 44.652137 -124.070921 10 meters Mesophile gram- Free living None Marine, Coastal Bacteria Proteobacteria Gammaproteobacteria BACTERIAL Marine gamma proteobacterium sp HTCC2207 HTCC2207 gamma proteobacterium HTCC2207 HTCC2207 Gi00902 Genome incomplete Public J. Craig Venter Institute, Oregon State Univ Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm GB2207 Marine Microbial Initiative (MMI), Environmental 314287 16658 001624_GCAT 638341247 NZ_AAPI00000000 Draft 2620 2465 49.4 Sanger USA Coastal area near Newport Oregon at a depth of 10m USA Coastal area near Newport Oregon at a depth of 10m 44.652348 -124.063185 10 m Aerobe Mesophile gram- Free living None Marine, Coastal Heterotroph Bacteria Proteobacteria Gammaproteobacteria BACTERIAL Marine gamma proteobacterium sp HTCC2143 HTCC2143 marine gamma proteobacterium HTCC2143 HTCC2143 Gi00903 Genome incomplete Public Oregon State Univ, J. Craig Venter Institute Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm GP Marine Microbial Initiative (MMI), Environmental 247633 13605 001625_GCAT 95349 639857034 NZ_AAVT00000000 Draft 3925 3749 47 Sanger USA Coastal pacific ocean near Newport Oregon at a depth of 10m USA Coastal pacific ocean near Newport Oregon at a depth of 10m 44.652348 -124.063185 10 m Mesophile gram- Free living None Marine, Coastal Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriales bacterium HTCC2170 BACTERIAL Flavobacteriales sp HTCC2170 HTCC2170 Flavobacteriales bacterium HTCC2170 HTCC2170 Gi00904 Genome incomplete Public Oregon State Univ, J. Craig Venter Institute Moore Foundation Giovannoni SJ http://mcb.science.oregonstate.edu/giovannoni/people/people.htm FB Marine Microbial Initiative (MMI), Environmental 313603 13595 001626_GCAT 152518 638341094 NZ_AAOC00000000 Draft 3873 3568 37 Sanger USA Coastal area of Newport Oregon at a depth of 10m USA Coastal area of Newport Oregon at a depth of 10m 44.655 -124.064 10 meters Aerobe Rod-shaped Mesophile gram- Free living None Marine, Fresh water, Coastal Motile Heterotroph Bacteria Proteobacteria Betaproteobacteria beta proteobacterium KB13 BACTERIAL beta proteobacterium sp KB13 KB13 beta proteobacterium KB13 Gi02451 Genome incomplete Public Univ of Hawaii, J. Craig Venter Institute Moore Foundation Rappe MS http://www.soest.hawaii.edu/oceanography/faculty_html/rappe.html Marine Microbial Initiative (MMI), Environmental 314607 13602 001627_GCAT 638341094 NZ_ABXG00000000 Draft 1332 0 35 USA "Surface waters of Kaneohe Bay, Hawaii" USA Surface waters of Kaneohe Bay, Hawaii 21.460467 -157.787657 Surface Mesophile gram- Free living None Surface water, Marine Bacteria Proteobacteria Gammaproteobacteria Congregibacter Congregibacter litoralis BACTERIAL Congregibacter litoralis KT71 KT71 Congregibacter litoralis KT71 Gi00905 Genome incomplete Public Max Planck Institute, J. Craig Venter Institute Moore Foundation Amann R http://www.mpi-bremen.de/en/Department_of_Molecular_Ecology.html KT Marine Microbial Initiative (MMI), Environmental 314285 13585 000025_GCAT 154782 638341070 NZ_AAOA00000000 Draft 4328 4030 58 Sanger USA Surface waters of the North Sea near Helgoland Germany Germany North Sea near Helgoland Germany 54.25 7.933333 Surface Mesophile gram- Free living None Surface water, Marine Heterotroph Bacteria Proteobacteria Zetaproteobacteria Mariprofundales Mariprofundaceae Mariprofundus Mariprofundus ferrooxydans BACTERIAL Mariprofundus ferrooxydans PV-1 PV-1 Mariprofundus ferrooxydans PV-1 Gi00906 Genome incomplete Public J. Craig Venter Institute, Woods Hole Oceanographic Institute Moore Foundation Edwards KJ http://www.whoi.edu/science/MCG/edwards/ SPV Marine Microbial Initiative (MMI), Environmental 314345 13615 001629_GCAT 163978 639857004 NZ_AATS00000000 Draft 2867 2962 54 Sanger USA Loihi Seamount Hawaii at a depth of 1100 meters USA Loihi Seamount Hawaii at a depth of 1100 meters 18.95000 -155.25000 1100 meters Aerobe Mesophile gram- Free living None Marine Iron oxidizer Chemolithoautotroph Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Sideroxydans Sideroxydans lithotrophicus BACTERIAL Sideroxydans lithotrophicus ES-1 ES-1 Sideroxydans lithotrophicus ES-1 Gi01558 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bioremediation, Environmental, Biotechnological 580332 33161 001630_GCAT 7786 0 NZ_ACVF00000000 Draft 17 2994 3031 57 USA iron contaminated groundwater in Michigan USA Aerobe Mesophile gram- Free living None Fresh water Iron oxidizer Chemolithoautotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Aurantimonadaceae Aurantimonas BACTERIAL Aurantimonas sp SI85-9A1 SI85-9A1 Aurantimonas sp. SI85-9A1 Gi00907 Genome incomplete Public Scripps Institute of Oceanography, J. Craig Venter Institute Moore Foundation Tebo BM tebo@ebs.ogi.edu http://mbrdbeta.ucsd.edu/labpages/tebo_lab.cfm SI859A1 Coral Pathogen, Marine Microbial Initiative (MMI), Environmental 314269 13607 001632_GCAT 151248 638341009 NZ_AAPJ00000000 Draft 4325 3759 66.7 Sanger USA 120 m depth of a Saanich Inlet a seasonally anoxic fjord in British Columbia in Canada Canada "Saanich Inlet, seasonally anoxic fjord in British Colombia, Canada, also hydrothermal plumes, Black Sea, Alvinella worm surfaces" 48.90000 -123.88333 120 meters Aerobe Rod-shaped Mesophile Halophile gram- Free living None Marine Pathogen Chemoheterotroph Bacteria Lentisphaerae Victivallaceae Victivallis Victivallis vadensis BACTERIAL Victivallis vadensis DSM 14823 DSM 14823 Victivallis vadensis ATCC BAA-548 ATCC BAA-548, DSM 14823 Yes Gi01047 Genome Permanent Draft Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org VvadDRAFT Biotechnological, Medical, Evolutionary 340101 15583 001633_GCAT 235858 640963013 NZ_ABDE00000000 Complete Level 2: High-Quality Draft 4577 3640 59.2 USA Human feces Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Coccus-shaped Mesophile gram- Free living None Host, Intestinal microflora 37 Nonmotile Cellobiose-degrading Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Wolbachia Wolbachia sp. wNo BACTERIAL Wolbachia sp. wNo wNo Gi00686 Genome incomplete Public Univ of Uppsala, Univ of Kopenhagen, IMBB-FORTH European Union Bourtzis K bourtzis@imbb.forth.gr Biotechnological 66080 001635_GCAT 638341233 1500 0 0 European Consortium Aerobe Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Drosophila simulans None Insect endosymbiont, Host, Endosymbiont Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Wolbachia BACTERIAL Wolbachia sp. wUni (Muscidifurax uniraptor) wUni (Muscidifurax uniraptor) Gi00687 Genome incomplete Public Univ of Uppsala, Univ of Kopenhagen, IMBB-FORTH European Union Andersson SGE Biotechnological 77037 33275 001636_GCAT 643886011 NZ_ACFP00000000 Draft 256 867 912 35 European Consortium dissected ovaries of Muscidifurax uniraptor females that were grown in the laboratory dissected ovaries of Muscidifurax uniraptor females that were grown in the laboratory Muscidifurax uniraptor Female Aerobe Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Muscidifurax uniraptor None Host, Insect endosymbiont Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Wolbachia Wolbachia sp. wVul BACTERIAL Wolbachia sp. wVul wVul Gi00688 Genome incomplete Public Univ of Uppsala, Univ of Kopenhagen, IMBB-FORTH European Union Bourtzis K bourtzis@imbb.forth.gr Biotechnological 77824 001637_GCAT 0 1500 0 0 European Consortium Aerobe Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Armadillidium vulgare None Host, Insect endosymbiont Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Wolbachia BACTERIAL Wolbachia sp. (Dirofilaria immitis) (Dirofilaria immitis) Gi00684 Genome incomplete Public Univ of Milano, Univ of Uppsala, Univ of Kopenhagen, IMBB-FORTH Bandi C http://www.unimi.it/chiedove/persona.idc?matricola=13975 Biotechnological 82301 001638_GCAT 6132 0 0 0 0 European Consortium Aerobe Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Dirofilaria immitis None Host, Insect endosymbiont Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Wolbachia BACTERIAL Wolbachia sp (Brugia malayi) (Brugia malayi) Wolbachia endosymbiont of Brugia malayi Gi00682 Genome incomplete Public J. Craig Venter Institute Biotechnological 80849 12515 001639_GCAT 6124 0 0 0 0 USA Aerobe Coccus-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Brugia malayi None Host, Insect endosymbiont Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Wolbachia Wolbachia endosymbiont of Drosophila willistoni BACTERIAL Wolbachia sp (Drosophila willistoni TSC#14030-0811.24) (Drosophila willistoni TSC#14030-0811.24) Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24 Gi01546 Genome incomplete Public J. Craig Venter Institute Wendoof Biotechnological 384035 16739 001640_GCAT 638341234 NZ_AAQP00000000 Draft 862 992 35 USA Aerobe Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Drosophila willistoni None Host, Insect endosymbiont Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Wolbachia Wolbachia endosymbiont of Drosophila ananassae BACTERIAL Wolbachia sp (Drosophila ananassae) (Drosophila ananassae) Wolbachia endosymbiont of Drosophila ananassae Gi01234 Genome incomplete Public J. Craig Venter Institute WwAna Biotechnological 307502 13365 001641_GCAT 161967 638341232 NZ_AAGB00000000 Draft 1440 1834 35 Sanger USA Aerobe Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Drosophila ananassae None Host, Endosymbiont Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Wolbachia BACTERIAL Wolbachia sp Drosophila simulans Drosophila simulans Wolbachia endosymbiont of Drosophila simulans Gi01235 Genome incomplete Public J. Craig Venter Institute WwSim Biotechnological 77038 13364 001642_GCAT 171927 638341233 NZ_AAGC00000000 Draft 1063 781 35 Sanger USA Aerobe Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Drosophila simulans None Host, Endosymbiont Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Wolbachia BACTERIAL Wolbachia sp. (Onchocerca volvulus) (Onchocerca volvulus) Wolbachia endosymbiont of Onchocerca volvulus Gi00685 Genome incomplete Public Liverpool School of Tropical Medicine, New England Biolabs, Sanger Institute, Univ of Edinburgh Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Biotechnological 77551 12625 001643_GCAT 167303 0 1100 0 0 International Aerobe Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Onchocerca volvulus None Host, Endosymbiont Bacteria Verrucomicrobia Verrucomicrobiae Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium spinosum BACTERIAL Verrucomicrobium spinosum DSM 4136 DSM 4136 Verrucomicrobium spinosum DSM 4136 Gi00677 Genome incomplete Public J. Craig Venter Institute NSF Ward NL nward@tigr.org VspiD Biotechnological, Evolutionary, Environmental 240016 10620 001644_GCAT 641736179 NZ_ABIZ00000000 Draft 8220 6642 60 USA Soil from the Tama graveyard Tokyo in 1966 1986 Japan Soil from the Tama graveyard Tokyo in 1966 35.45765 139.574203 Facultative Rod-shaped Mesophile gram- Free living Singles None Heterotroph Bacteria Tenericutes Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma BACTERIAL Candidatus Phytoplasma Western X disease Gi00456 Genome incomplete Public Ohio State Univ Plant Pathogen, Agricultural 37704 13620 001646_GCAT 15594 0 670 0 0 USA Aerobe Mesophile gram- Symbiotic Parasitic Western X-disease Pathogen Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio alginolyticus BACTERIAL Vibrio alginolyticus 12G01 12G01 Vibrio alginolyticus 12G01 Gi00908 Genome incomplete Public MIT, J. Craig Venter Institute Moore Foundation Polz M http://cee.mit.edu/index.pl?id=2366&isa=Category&op=show_printer_friendly V Environmental, Medical, Marine Microbial Initiative (MMI), Human Pathogen 314288 13571 001647_GCAT 638341222 NZ_AAPS00000000 Draft 5152 4882 45 Sanger USA Surface waters from Plum Island Ecosystem-LTER USA Surface waters from Plum Island Ecosystem-LTER USA Surface waters Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Bacteremia, Soft tissue infection Surface water, Marine Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio angustum BACTERIAL Vibrio angustum S14 S14 Vibrio angustum S14 Gi00909 Genome incomplete Public Univ of New South Wales, J. Craig Venter Institute Moore Foundation Cavicchioli R http://www.babs.unsw.edu.au/research/ehm/lab_cavicchioli.html VAS Marine Microbial Initiative (MMI), Environmental 314292 13567 001648_GCAT 202420 638341223 NZ_AAOJ00000000 Draft 5082 4893 40 Sanger USA Botany Bay near Sydney Australia from surface waters Australia Botany Bay near Sydney Australia from surface waters -34.01667 151.31667 Surface Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Surface water, Marine Motile Copiotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio campbellii BACTERIAL Vibrio campbellii AND4 AND4 Vibrio campbellii AND4 Gi00910 Genome incomplete Public Univ of Kalmar, J. Craig Venter Institute Moore Foundation Hagstrom A http://halia.hik.se/start.jsp?page=members/ake%20hagstrom AND Marine Microbial Initiative (MMI), Environmental 314289 13564 001649_GCAT 246213 641380451 NZ_ABGR00000000 Draft 4255 4060 45 USA Andaman Sea near Thailand at a depth of 2-5 m Thailand Andaman Sea near Thailand at a depth of 2-5 m 7.79944 98.2075 2-5 meters Facultative Rod-shaped Nonsporulating Mesophile Halophile gram- Free living Singles None Marine 30 - 35 Motile Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma parvum BACTERIAL Ureaplasma parvum sv 1, ATCC 27813 sv 1, ATCC 27813 1 Ureaplasma parvum serovar 1 str. ATCC 27813 ATCC 27813 Gi01764 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml UPA Human Pathogen, Medical 95656 20245 001650_GCAT 15809 641736108 NZ_ABES00000000 Draft 750 609 0 Sanger USA Facultative Sphere-shaped Mesophile gram- Free living Singles Respiratory infection, Urinary tract infection Host Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma parvum BACTERIAL Ureaplasma parvum sv 3, ATCC 27815 sv 3, ATCC 27815 3 Ureaplasma parvum serovar 3 str. ATCC 27815 ATCC 27815 Gc00742 Gi01765 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml UPA 2008-02-26 Unpublished Medical, Human Pathogen 505682 19087 001651_GCAT 641522658 NC_010503 Complete 751 675 25.5 USA Facultative Sphere-shaped Mesophile gram- Free living Singles Respiratory infection, Urinary tract infection Host Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma parvum BACTERIAL Ureaplasma parvum sv 6, ATCC 27818 sv 6, ATCC 27818 6 Ureaplasma parvum serovar 6 str. ATCC 27818 ATCC 27818 Gi01766 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml UPA Medical, Human Pathogen 519851 19413 001652_GCAT 641736200 NZ_AAZQ00000000 Draft 7729 661 25.8 USA Homo sapiens Urogenital tract Urethra Facultative Sphere-shaped Mesophile gram- Free living Singles Respiratory infection, Urinary tract infection Host Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma urealyticum BACTERIAL Ureaplasma urealyticum 23, sv 2 23, sv 2 2 Ureaplasma urealyticum serovar 2 str. ATCC 27814 ATCC 27814 Gi01767 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml Uurealyserovar Medical, Human Pathogen 95657 20687 001653_GCAT 15817 641736207 NZ_ABFL00000000 Draft 877 1460 25 USA Patient with nongonococcal urethritis Patient with nongonococcal urethritis Homo sapiens Patient with nongonococcal urethritis Urogenital tract Facultative Coccus-shaped Mesophile gram+ Free living Singles Non-specific urethritis (NSU), Chorioamnioitis, Infertility Host, Urogenital tract 37 Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma urealyticum BACTERIAL Ureaplasma urealyticum sv 5, ATCC 27817 sv 5, ATCC 27817 5 Ureaplasma urealyticum serovar 5 str. ATCC 27817 ATCC 27817 Gi01768 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml UUR Medical, Human Pathogen 95659 19415 001654_GCAT 262038 641736201 NZ_AAZR00000000 Draft 884 710 26 USA Patient with nongonococcal urethritis Patient with nongonococcal urethritis Homo sapiens Patient with nongonococcal urethritis Urogenital tract Facultative Sphere-shaped Mesophile gram+ Free living Singles Non-specific urethritis (NSU), Chorioamnioitis, Infertility Host, Urogenital tract Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma urealyticum BACTERIAL Ureaplasma urealyticum 58, sv 4 58, sv 4 4 Ureaplasma urealyticum serovar 4 str. ATCC 27816 Gi01769 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml Uurese Medical, Human Pathogen 95658 19091 001655_GCAT 267208 641736238 NZ_AAYO00000000 Draft 850 1431 26 USA Urogenital tract Facultative Sphere-shaped Mesophile gram- Free living Singles Non-specific urethritis (NSU), Chorioamnioitis, Infertility Host, Urogenital tract Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma urealyticum BACTERIAL Ureaplasma urealyticum Co, sv 7, ATCC 27819 Co, sv 7, ATCC 27819 7 Ureaplasma urealyticum serovar 7 str. ATCC 27819 ATCC 27819 Gi01770 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml Uureser Medical, Human Pathogen 95661 19093 001656_GCAT 280354 641736246 NZ_AAYP00000000 Draft 894 1496 26.2 USA Urethra Homo sapiens Urogenital tract Urethra Facultative Sphere-shaped Mesophile gram+ Free living Singles Non-specific urethritis (NSU), Chorioamnioitis, Infertility Host, Urogenital tract Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma urealyticum BACTERIAL Ureaplasma urealyticum K2, sv 11, ATCC 33695 K2, sv 11, ATCC 33695 11 Ureaplasma urealyticum serovar 11 str. ATCC 33695 ATCC 33695 Gi01771 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml Uureserova Medical, Human Pathogen 526347 19417 001657_GCAT 289858 641736202 NZ_AAZS00000000 Draft 890 1465 26.1 USA Homo sapiens Urogenital tract Facultative Coccus-shaped Mesophile gram+ Free living Singles Non-specific urethritis (NSU), Infertility, Chorioamnioitis Host, Urogenital tract 37 Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma urealyticum BACTERIAL Ureaplasma urealyticum T 960, sv 8 T 960, sv 8 8 Ureaplasma urealyticum serovar 8 str. ATCC 27618 Gi01772 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml Uures Medical, Human Pathogen 95662 19089 001658_GCAT 265763 641736239 NZ_AAYN00000000 Draft 980 1637 26.3 USA Homo sapiens Urogenital tract Facultative Sphere-shaped Mesophile gram- Free living Singles Non-specific urethritis (NSU), Infertility, Chorioamnioitis Host, Urogenital tract 37 Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma urealyticum BACTERIAL Ureaplasma urealyticum U24, sv 12, ATCC 33696 U24, sv 12, ATCC 33696 12 Ureaplasma urealyticum serovar 12 str. ATCC 33696 ATCC 33696 Gi01773 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml Uureserovar Medical, Human Pathogen 550747 19419 001659_GCAT 333005 641736203 NZ_AAZT00000000 Draft 840 1406 25.9 USA Homo sapiens Urogenital tract Facultative Coccus-shaped Mesophile gram+ Free living Singles Infertility, Non-specific urethritis (NSU), Chorioamnioitis Host, Urogenital tract 37 Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma urealyticum BACTERIAL Ureaplasma urealyticum U38, sv 13, ATTC 33698 U38, sv 13, ATTC 33698 13 Ureaplasma urealyticum serovar 13 str. ATCC 33698 ATTC 33698 Gi01774 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml UUR Medical, Human Pathogen 95667 20405 001660_GCAT 15826 641736110 NZ_ABEV00000000 Draft 846 687 25 USA Pregnant woman Pregnant woman Homo sapiens Female Pregnant Urogenital tract Facultative Sphere-shaped Mesophile gram+ Free living Singles Non-specific urethritis (NSU), Infertility, Chorioamnioitis Host, Urogenital tract 37 Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma urealyticum BACTERIAL Ureaplasma urealyticum Vancouver, sv 9 Vancouver, sv 9 9 Ureaplasma urealyticum serovar 9 str. ATCC 33175 Gi01775 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml Uuresero Medical, Human Pathogen 95663 19095 001661_GCAT 15822 641736245 NZ_AAYQ00000000 Draft 970 1636 26.3 USA Homo sapiens Urogenital tract Facultative Sphere-shaped Mesophile gram+ Free living Singles Non-specific urethritis (NSU), Infertility, Chorioamnioitis Host, Urogenital tract Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma urealyticum BACTERIAL Ureaplasma urealyticum Western, sv 10, ATCC 33699 Western, sv 10, ATCC 33699 10 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ATCC 33699 Gc00868 Gi01776 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml Uureaserovar 2008-10-16 Unpublished Medical, Human Pathogen 565575 20247 001662_GCAT 305377 643348586 NC_011374 Complete 874 1487 1 0 0 USA Homo sapiens Urogenital tract Facultative Coccus-shaped Mesophile gram+ Free living Singles Infertility, Non-specific urethritis (NSU), Chorioamnioitis Host, Urogenital tract 37 Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Ureaplasma Ureaplasma parvum BACTERIAL Ureaplasma parvum U26, sv 14, ATCC 33697 U26, sv 14, ATCC 33697 14 Ureaplasma parvum serovar 14 str. ATCC 33697 ATCC 33697 Gi01881 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Methe B http://www.tigr.org/faculty/Methe_Barbara/index.shtml UPA14 Medical, Human Pathogen 95668 20185 001663_GCAT 270907 641736107 NZ_ABER00000000 Draft 750 634 0 Sanger USA Homo sapiens Urogenital tract Facultative Sphere-shaped Mesophile gram- Free living Singles Urinary tract infection, Respiratory infection Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae 1587 1587 Vibrio cholerae 1587 Gi01637 Genome incomplete Public J. Craig Venter Institute NIH-NIAID A Medical, Human Pathogen 412966 18265 001670_GCAT 250349 640963020 NZ_AAUR00000000 Draft 4140 3967 47.5 USA Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Food poisoning, Cholera Fresh water Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae 2740-80 2740-80 Vibrio cholerae 2740-80 Gi01638 Genome incomplete Public J. Craig Venter Institute NIH-NIAID VC Medical 412614 18253 001671_GCAT 197217 640196212 NZ_AAUT00000000 Draft 3945 3868 47 USA Nontoxigenic environmental isolate from the Gulf Coast Nontoxigenic environmental isolate from the Gulf Coast Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles None Fresh water Motile Non-Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae AM-19226 AM-19226 O39 Vibrio cholerae AM-19226 Gi01639 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Medical, Human Pathogen 404974 17723 001672_GCAT 0 NZ_AATY00000000 Draft 4056 0 47.7 USA Bangladesh patient India Bangladesh patient Homo sapiens Patient Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Food poisoning, Cholera Fresh water Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae MAK757 MAK757 Vibrio cholerae MAK 757 Gi01640 Genome incomplete Public J. Craig Venter Institute NIH-NIAID A Medical, Human Pathogen 412967 18263 001673_GCAT 640963019 NZ_AAUS00000000 Draft 3920 3688 47.6 USA "Mildly toxigenic strain of the El Tor biotype, serotype Ogawa" Mildly toxigenic strain of the El Tor biotype, serotype Ogawa Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Food poisoning, Cholera Fresh water Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae MZO-3 MZO-3 Vibrio cholerae MZO-3 Gi01641 Genome incomplete Public J. Craig Venter Institute NIH-NIAID A Medical, Human Pathogen 412883 18261 001674_GCAT 640963021 NZ_AAUU00000000 Draft 4150 3580 47.6 USA Clinical isolated from Bangladesh India Clinical isolated from Bangladesh Homo sapiens Patient Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Food poisoning, Cholera Fresh water Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio harveyi BACTERIAL Vibrio harveyi HY01 HY01 Vibrio harveyi HY01 Gi01642 Genome incomplete Public J. Craig Venter Institute NIH-NIAID A Marine Pathogen 410291 17467 001675_GCAT 243287 640963010 NZ_AAWP00000000 Draft 5400 4492 45.6 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Vibriosis Fresh water, Marine Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. Ex25 BACTERIAL Vibrio sp. Ex25 Ex25 062 Vibrio sp. Ex25 Gi01643 Genome incomplete Public J. Craig Venter Institute NIH-NIAID VEx Biotechnological 150340 15693 001676_GCAT 24526 638341229 NZ_AAKK00000000 Draft 4838 4352 44 Sanger USA Deep-sea hydrothermal vent Deep-sea hydrothermal vent Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Hydrothermal vent, Fresh water, Marine Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae MO10 MO10 O139 Vibrio cholerae MO10 Gi01150 Genome incomplete Public J. Craig Venter Institute NIH-NIAID VchoM Medical, Human Pathogen 345072 15666 001677_GCAT 638341224 NZ_AAKF00000000 Draft 4024 3502 0 Sanger USA Early isolate of O139 emergence Early isolate of O139 emergence Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Food poisoning, Cholera Fresh water Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae 623-39 623-39 Vibrio cholerae 623-39 Gi01677 Genome incomplete Public J. Craig Venter Institute NIH-NIAID A Medical, Human Pathogen 417397 18493 001678_GCAT 237576 640963003 NZ_AAWG00000000 Draft 4000 3939 47.5 USA Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Food poisoning, Cholera Fresh water Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae B33 B33 Vibrio cholerae B33 Gi01678 Genome incomplete Public J. Craig Venter Institute NIH-NIAID A Medical, Human Pathogen 417400 18499 001679_GCAT 211746 640963005 NZ_AAWE00000000 Draft 4000 3818 47.5 USA "Beira, Mozambique in 2004" 2004 Beira, Mozambique in 2004 -19.827271 34.836109 Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Cholera, Food poisoning Fresh water Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus BACTERIAL Vibrio parahaemolyticus 16 16 Vibrio parahaemolyticus 16 Gi01685 Genome incomplete Public J. Craig Venter Institute Moore Foundation Edwards R rob@salmonella.org Human Pathogen, Medical, Marine Microbial Initiative (MMI) 391586 19395 001681_GCAT 134300 0 NZ_ACCV00000000 Draft 4489 0 46 USA Tampa Bay USA Tampa Bay Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Food poisoning, Cholera Marine Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae NCTC 8457 NCTC 8457 Vibrio cholerae NCTC 8457 NCTC 8457 Gi01680 Genome incomplete Public J. Craig Venter Institute NIH-NIAID A Medical, Human Pathogen 417399 18497 001682_GCAT 242469 640963006 NZ_AAWD00000000 Draft 4100 4139 47.4 USA Clinical specimen in Saudi Arabia in 1910 1910 Saudi Arabia Clinical specimen in Saudi Arabia in 1910 Homo sapiens Patien Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Food poisoning, Cholera Fresh water Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus BACTERIAL Vibrio parahaemolyticus AQ3810 AQ3810 Vibrio parahaemolyticus AQ3810 Gi01700 Genome incomplete Public J. Craig Venter Institute NIH-NIAID A Medical, Human Pathogen 419109 18601 001683_GCAT 245699 640963009 NZ_AAWQ00000000 Draft 5800 5691 45.6 USA Clinical strain isolated isolated from a traveler returning to Japan from Singapore in 1983 1983 Japan Clinical strain isolated isolated from a traveler returning to Japan from Singapore in 1983 Homo sapiens Patien Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Gastroenteritis, Food poisoning Fresh water 20 - 30 Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae MZO-2 MZO-2 O14 Vibrio cholerae MZO-2 Gi01681 Genome incomplete Public J. Craig Venter Institute NIH-NIAID A Medical, Human Pathogen 417398 18495 001684_GCAT 257615 640963004 NZ_AAWF00000000 Draft 3900 3582 47.6 USA Patients with diarrhea in Bangladesh in 2001 2001 India Patients with diarrhea in Bangladesh in 2001 Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Food poisoning, Cholera Fresh water Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae RC385 RC385 O135 Vibrio cholerae RC385 Gi01152 Genome incomplete Public J. Craig Venter Institute VchoR Medical, Human Pathogen 345074 15668 001686_GCAT 638341226 NZ_AAKH00000000 Draft 3625 3307 47 Sanger USA Persistent environmental isolate from Chesapeake Bay USA Persistent environmental isolate from Chesapeake Bay 37.584154 -76.178374 Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Food poisoning, Cholera Marine, Fresh water 20 - 30 Motile Luminescent Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae V51 V51 Vibrio cholerae V51 Gi01153 Genome incomplete Public J. Craig Venter Institute NIH-NIAID VchoV Medical, Human Pathogen 345075 15669 001687_GCAT 638341227 NZ_AAKI00000000 Draft 3773 3417 47.5 Sanger USA Gastrointestinal tract Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Food poisoning, Gastrointestinal disease, Cholera Fresh water, Host, Gastrointestinal tract 20 - 30 Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae V52 V52 O37 Vibrio cholerae V52 Gi01154 Genome incomplete Public J. Craig Venter Institute NIH-NIAID VchoV Medical, Human Pathogen 345076 15670 001688_GCAT 187148 638341228 NZ_AAKJ00000000 Draft 3906 3467 47 Sanger USA Sudan isolate Sudan Sudan isolate Gastrointestinal tract Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Food poisoning, Cholera Fresh water, Gastrointestinal tract, Host 20 - 30 Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio BACTERIAL Vibrio cholerae VTV2 VTV2 Gi01277 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Medical, Human Pathogen 666 001689_GCAT 279494 0 0 0 47 USA Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Food poisoning, Cholera Fresh water, Host Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio BACTERIAL Vibrio harveyi ATCC BAA-1116 ATCC BAA-1116 Vibrio harveyi ATCC BAA-1116 ATCC BAA-1116 Gi01129 Genome incomplete Public Naval Research Laboratory Office of Naval Research Vora GJ gvora@cbmse.nrl.navy.mil Environmental 669 16347 001690_GCAT 91201 640753058 5300 0 0 USA Ocean on 1993 1993 Ocean on 1993 Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Marine 20 - 30 Motile Bioluminescent Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Aliivibrio Aliivibrio salmonicida BACTERIAL Aliivibrio salmonicida LFI1238 LFI1238 Gc00865 Gi00679 Genome Complete and Published Public Sanger Institute, Univ of Tromso, NORSTRUCT Thomson NR 2008-10-01 BMC Genomics 9:616 Fish Pathogen 316275 30703 001693_GCAT 334678 0 NC_011312, NC_011313 Complete 4200 3808 2 4 39 European Consortium Atlantic cod from Hammerfest, Norway Norway Atlantic cod from Hammerfest, Norway 70.662316 23.682752 Cod Facultative Rod-shaped Nonsporulating Psychrophile gram- Free living Hitra disease Fresh water Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio splendidus BACTERIAL Vibrio splendidus 12B01 12B01 Vibrio splendidus 12B01 Gi00911 Genome incomplete Public MIT, J. Craig Venter Institute Moore Foundation Polz M http://cee.mit.edu/index.pl?id=2366&isa=Category&op=show_printer_friendly V Environmental, Oyester Pathogen, Marine Microbial Initiative (MMI), Fish Pathogen 314291 13568 001694_GCAT 202881 638341231 NZ_AAMR00000000 Draft 5596 5429 46 Sanger USA Surface waters from Plum Island Ecosystem-LTER USA Surface waters from Plum Island Ecosystem-LTER USA Surface waters Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Vibriosis Surface water, Marine Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio splendidus BACTERIAL Vibrio splendidus LGP32 LGP32 Vibrio splendidus LGP32 CIP 107715 Gc00912 Gi01155 Genome Complete and Published Public Institut Pasteur Mazel D fleroux@pasteur.fr http://www.pasteur.fr/recherche/unites/pgb/pgb_team.html 2008-12-17 Environ Microbiology 11, 1959-70 Environmental, Oyester Pathogen, Fish Pathogen 575788 32815 001695_GCAT 110371 643348587 NC_011744, NC_011753 Complete AMIGene:2.0 5000 4431 2 0 44 France caused significant mortalities in oysters, Crassostrea gigas, during the summer of 2001 Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Vibriosis Fresh water Motile Facultative intracellular, Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. MED222 BACTERIAL Vibrio sp. MED222 MED222 Vibrio sp. MED222 Gi00912 Genome incomplete Public Kalmar Univ, J. Craig Venter Institute Moore Foundation Pinhassi J http://halia.hik.se/start.jsp?page=members/jarone%20pinhassi MED Marine Microbial Initiative (MMI), Environmental 314290 13616 001696_GCAT 200111 638341230 NZ_AAND00000000 Draft 4882 4834 45 Sanger USA NW Mediterranean Sea at a depth of 1m NW Mediterranean Sea at a depth of 1m 41.66667 2.8 1 meter Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Marine Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas albilineans BACTERIAL Xanthomonas albilineans GPE PC73 GPE PC73 Xanthomonas albilineans GPE PC73 Gi01524 Genome incomplete Public Genoscope Barbe V vbarbe@genoscope.cns.fr Plant Pathogen, Agricultural 380358 16687 001698_GCAT 0 5000 0 0 France Guadeloupe Mexico Guadeloupe Aerobe Rod-shaped Mesophile gram- Free living Leaf scald disease Host Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus coahuilensis BACTERIAL Bacillus coahuilensis m4-4 m4-4 Bacillus coahuilensis m4-4 CECT 7197, NRRL B-41737 Gi03380 Gc00768 Genome incomplete Public Cinvestav Campus Guanajuato Herrera-Estrella L lherrera@ira.cinvestav.mx 441769 19551 002616_GCAT 185852 642979338 NZ_ABFU00000000 Draft 3350 0 38 Mexico "Chihuahuan desert lagoon in Cuatro Ciinegas, Coahuila, Mexico" Mexico Chihuahuan desert lagoon in Cuatro Ciinegas, Coahuila, Mexico 26.986559 -102.063686 Rod-shaped Mesophile Halophile 7.0 - 8.0 gram+ Free living None Fresh water 30 - 37 Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium animalis BACTERIAL Bifidobacterium animalis lactis AD011 AD011 Bifidobacterium animalis subsp. lactis AD011 Gc00888 Gi01988 Genome Complete and Published Public KRIBB Park H-S hspark@kribb.re.kr BLA 2009-01-06 J Bacteriology 191, 678-679 Biotechnological, Medical, Food industry 442563 19423 002617_GCAT 643348515 NC_011835 Complete Phred/Phrap/Consed Glimmer 3, Critica 1933 1528 1 0 60.5 Korea Human infant fecal sample Homo sapiens Infant Healthy Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Intestinal microflora, Human fecal, Host 39 - 40 Nonmotile Probiotic, Non-Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Candidatus Thioturbo danicus BACTERIAL Thioturbo danicus Td_Nivab1 Td_Nivab1 Candidatus Thioturbo danicus Td_Nivab1 Gi01989 Genome incomplete Public J. Craig Venter Institute Moore Foundation Marine Microbial Initiative (MMI) 439501 19385 002618_GCAT 0 0 0 0 USA Niva Bay Denmark Denmark Niva Bay Denmark 55.93342 12.526259 Vibrio-shaped Mesophile gram- Free living None Marine Motile Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis mediasiatica FSC147 FSC147 Francisella tularensis subsp. mediasiatica FSC147 Gc00788 Gi01990 Genome Complete and Published Public Los Alamos National Laboratory, DOE Joint Genome Institute FOI Brettin T brettin@lanl.gov FTM 2008-05-07 Unpublished Animal Pathogen, Medical, Human Pathogen, Biothreat 441952 19571 002619_GCAT 284100 641522629 NC_010677 Complete 1893 1501 1 0 32.3 USA Gerbil in central Asia Gerbil in central Asia Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Tularemia Host, Fresh water Nonmotile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Thiovulum Thiovulum majus BACTERIAL Thiovulum majus Tm_Nivab2 Tm_Nivab2 Thiovulum majus Tm_Nivab2 Gi01991 Genome incomplete Public J. Craig Venter Institute Moore Foundation Marine Microbial Initiative (MMI) 439522 19387 002620_GCAT 0 0 0 0 USA Mesophile gram- Free living None Marine Motile Sulfide oxidizer Bacteria candidate division TM7 genomosp. GTL1 BACTERIAL Candidate division TM7 GTL1 candidate division TM7 genomosp. GTL1 Gi01993 Metagenome complete Public Diversa, J. Craig Venter Institute Keller M kellerm@ornl.gov 443342 19421 002622_GCAT 0 NZ_AAXS00000000 Draft 680 684 48 USA "A mixture of 5 cells from the TM7 phylum, identified by hybridization of a TM7 probe, were mixed together and amplified by multiple displacement amplification (MDA)" A mixture of 5 cells from the TM7 phylum, identified by hybridization of a TM7 probe, were mixed together and amplified by multiple displacement amplification (MDA) Mesophile Free living None Soil Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas axonopodis BACTERIAL Xanthomonas axonopodis pv. aurantifolii B 11122 11122 Xanthomonas axonopodis pv. aurantifolii str. 11122 Gi00689 Genome incomplete Public FAPESP, Univ of Sao Paulo FAPESP Contact bioinfo@citri.iq.usp.br Agricultural, Plant Pathogen 189395 18837 001699_GCAT 68804 0 5000 0 64 Brazil Aerobe Rod-shaped Mesophile gram- Free living Citrus canker Host 25 - 30 Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas fuscans BACTERIAL Xanthomonas fuscans pv. aurantifolii ICPB 10535 ICPB 10535 Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535 Gi00690 Genome incomplete Public FAPESP, Univ of Sao Paulo FAPESP Contact bioinfo@citri.iq.usp.br Plant Pathogen, Agricultural 427082 18835 001700_GCAT 68804 0 5000 0 64 Brazil Aerobe Rod-shaped Mesophile gram- Free living Citrus canker Host 25 - 30 Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas campestris BACTERIAL Xanthomonas campestris campestris B100 B100 campestris Xanthomonas campestris pv. campestris str. B100 Gc00728 Gi00692 Genome Complete and Published Public Bielefeld Univ BMBF Puehler A ttp://www.cebitec.uni-bielefeld.de/~puehler xccb100 2008-02-12 J Biotechnology 134, 33-45 Agricultural, Plant Pathogen 509169 29801 001701_GCAT 7897 642555169 NC_010688 Complete 1.5 Kb, 2 Kb, 3 Kb, 4-6 Kb Phred/Phrap/Consed GISMO, REGANOR 5079 4529 1 0 65 Sanger Germany Aerobe Rod-shaped Mesophile gram- Free living Black rot Host 25 - 30 Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas BACTERIAL Xanthomonas smithii citri Gi00694 Genome incomplete Public FAPESP, Univ of Sao Paulo, UNICAMP FAPESP Contact bioinfo@citri.iq.usp.br Plant Pathogen, Agricultural 346 001702_GCAT 0 5000 0 0 Brazil Aerobe Rod-shaped Mesophile gram- Free living Citrus canker Host 38 Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas oryzae BACTERIAL Xanthomonas oryzae pv oryzicola BLS256 BLS256 oryzicola Xanthomonas oryzae pv. oryzicola BLS256 Gi01538 Genome incomplete Public J. Craig Venter Institute, Univ of Maryland - CDCB Salzberg S salzberg@umd.edu Xoryp Plant Pathogen, Agricultural 383407 16740 001703_GCAT 641736188 NZ_AAQN00000000 Draft 4831 4474 64 USA Aerobe Rod-shaped Mesophile gram- Free living Bacterial streak disease Host Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Xenorhabdus Xenorhabdus bovienii BACTERIAL Xenorhabdus bovienii SS-2004 SS-2004 Xenorhabdus bovienii SS-2004 Gi00698 Genome incomplete Public Danforth Science Center NSF Biocontrol, Insect Pathogen, Agricultural 406818 13399 001704_GCAT 0 0 0 0 USA Gut Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Mutualistic Steinernema species Nematode gut, Host, Soil, Nematode symbiont Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Xenorhabdus Xenorhabdus nematophila BACTERIAL Xenorhabdus nematophila ATCC19061 ATCC19061 Xenorhabdus nematophila ATCC 19061 ATCC19061 Yes Gi00699 Genome incomplete Public Monsanto, Hiram College, Danforth Science Center NSF Goldman BS barry.s.goldman@monsanto.com Agricultural, Biocontrol, Insect Pathogen 406817 13400 001705_GCAT 0 0 0 0 USA Gut Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Mutualistic Steinernema carpocapsae Nematode gut, Host, Soil, Nematode symbiont Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xylella Xylella fastidiosa BACTERIAL Xylella fastidiosa-almond Dixon Dixon Xylella fastidiosa Dixon Gi00701 Genome Permanent Draft Public DOE Joint Genome Institute, Univ of California, Berkeley DOE Bruce D microbes@cuba.jgi-psf.org XfasaDRAFT Agricultural, Plant Pathogen 155919 260 001706_GCAT 156417 638341237 NZ_AAAL00000000 Complete Level 1: Standard Draft 2600 2459 52 Sanger USA Aerobe Rod-shaped Mesophile gram- Free living Singles Almond leaf scorch Host 26 - 28 Pathogen Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xylella Xylella fastidiosa BACTERIAL Xylella fastidiosa-oleander Ann-1 Ann-1 Xylella fastidiosa Ann-1 Gi00702 Genome Permanent Draft Public DOE Joint Genome Institute, Univ of California, Berkeley DOE Bruce D microbes@cuba.jgi-psf.org XfasoDRAFT Agricultural, Plant Pathogen 155920 261 001707_GCAT 133622 638341236 NZ_AAAM00000000 Complete Level 1: Standard Draft 5115 4844 51 Sanger USA Aerobe Rod-shaped Mesophile gram- Free living Singles Oleander leaf scorch Host Pathogen Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xylella Xylella fastidiosa BACTERIAL Xylella fastidiosa M12 M12 Xylella fastidiosa M12 Gc00748 Gi01665 Genome Complete and Published Public DOE Joint Genome Institute DOE Chen J Jianchi.Chen@ARS.USDA.GOV Xfasm12 2008-02-19 Unpublished Agricultural, Plant Pathogen 405440 17823 001708_GCAT 261559 641522659 NC_010513 Complete 2475 2421 1 0 51 USA Aerobe Rod-shaped Mesophile gram- Free living Singles Citrus variegated chlorosis Host Pathogen Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xylella Xylella fastidiosa BACTERIAL Xylella fastidiosa M23 M23 Xylella fastidiosa M23 Gc00767 Gi01701 Genome Complete and Published Public DOE Joint Genome Institute DOE Chen J Jianchi.Chen@ARS.USDA.GOV XfasM23 2008-04-11 Unpublished Plant Pathogen, Agricultural 405441 18457 001709_GCAT 275126 641522660 NC_010577 Complete 2535 2351 1 1 51 USA Almond tree in California USA California Aerobe Rod-shaped Mesophile gram- Free living Singles Citrus variegated chlorosis Host Pathogen Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xylella BACTERIAL Xylella fastidiosa Pierce's Disease Strain Pierce's Disease Strain Gi00700 Genome incomplete Public Univ of Campinas USDA, FAPESP van Sluys M-A mavsluys@usp.br Agricultural, Plant Pathogen 2371 001710_GCAT 272771 0 2700 0 51 Brazil Aerobe Rod-shaped Mesophile gram- Free living Singles Pierces disease Host 26 - 28 Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia bercovieri BACTERIAL Yersinia bercovieri ATCC 43970 ATCC 43970 Yersinia bercovieri ATCC 43970 CDC 2475-87, ATCC 43970, WAIP 208, CNY 7506 Yes Gi01169 Genome incomplete Public Naval Medical Research Center DOD YberA Human Pathogen, Medical 349968 16104 001711_GCAT 41642 638341238 NZ_AALC00000000 Draft 4301 3634 48 Sanger USA Human feces in France France Human feces in France Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Food poisoning, Gastroenteritis Host Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia frederiksenii BACTERIAL Yersinia frederiksenii ATCC 33641 ATCC 33641 Yersinia frederiksenii ATCC 33641 ATCC 33641 Yes Gi01170 Genome incomplete Public Naval Medical Research Center DOD YfreA Medical, Human Pathogen 349966 16106 001712_GCAT 41648 638341239 NZ_AALE00000000 Draft 4845 4217 46 Sanger USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Food poisoning, Gastroenteritis Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia intermedia BACTERIAL Yersinia intermedia ATCC 29909 ATCC 29909 Yersinia intermedia ATCC 29909 ATCC 29909 Yes Gi01171 Genome incomplete Public Naval Medical Research Center DOD YintA Medical, Human Pathogen 349965 16107 001713_GCAT 17691 638341240 NZ_AALF00000000 Draft 4672 3939 47 Sanger USA Human urine Human urine Homo sapiens Urogenital tract Urine Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Food poisoning, Gastroenteritis Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia mollaretii BACTERIAL Yersinia mollaretii ATCC 43969 ATCC 43969 Yersinia mollaretii ATCC 43969 WAIP 204, CNY 7263, CDC 2465-87, ATCC 43969 Yes Gi01172 Genome incomplete Public Naval Medical Research Center DOD YmolA Medical, Human Pathogen 349967 16105 001714_GCAT 37259 638341241 NZ_AALD00000000 Draft 4527 3800 49 Sanger USA Soil in the USA USA Soil in the USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Food poisoning, Gastroenteritis Soil, Host, Fresh water, Food Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Angola Angola antiqua Yersinia pestis Angola Gc00696 Gi01173 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID Ravel J YpAngola 2007-12-12 Unpublished Human Pathogen, Rodent Pathogen, Medical 349746 16067 001715_GCAT 249864 641228512 NC_010159 Complete 6-8 kb, 10-12 kb, 38-50 kb 8x 4504 4532 1 2 47 Sanger USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Gastroenteritis, Bubonic plague, Food poisoning Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis bv Orientalis MG05-1020 MG05-1020 Orientalis Yersinia pestis biovar Orientalis str. MG05-1020 Gi01644 Genome incomplete Public J. Craig Venter Institute NIH-NIAID YpMG Medical, Human Pathogen, Animal Pathogen 404217 17689 001716_GCAT 264980 641736247 NZ_AAYS00000000 Draft 4977 4588 47 USA Pus collected from a blister on the abdomen of an 8 year old male patient on 2005 2005 Pus collected from a blister on the abdomen of an 8 year old male patient on 2005 Homo sapiens Male 8 years old Patient Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic plague Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis bv Antiqua UG05-0454 UG05-0454 Antiqua Yersinia pestis biovar Antiqua str. UG05-0454 Gi01645 Genome incomplete Public J. Craig Venter Institute NIH-NIAID YpUG Human Pathogen, Animal Pathogen, Medical 404218 17691 001717_GCAT 266038 641736248 NZ_AAYR00000000 Draft 4838 4376 47 USA Bubo aspirate from a 10 year old female patient on 2004 2004 Bubo aspirate from a 10 year old female patient on 2004 Homo sapiens Female 10 years old Patient Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic plague Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis bv Antiqua B42003004 B42003004 Antiqua Yersinia pestis biovar Antiqua str. B42003004 Gi01278 Genome incomplete Public J. Craig Venter Institute NIH-NIAID YpB Animal Pathogen, Human Pathogen, Medical 404215 17685 001718_GCAT 260682 641736242 NZ_AAYU00000000 Draft 4841 4432 47 USA Gray marmot Marmota baibacina by Chinese plague experts during daily surveillance in Wenquan in China China Gray marmot Marmota baibacina by Chinese plague experts during daily surveillance in Wenquan in China Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic plague Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis bv Antiqua E1979001 E1979001 Antiqua Yersinia pestis biovar Antiqua str. E1979001 Gi01279 Genome incomplete Public J. Craig Venter Institute NIH-NIAID YpE Animal Pathogen, Human Pathogen, Medical 360099 17683 001719_GCAT 269748 641736244 NZ_AAYV00000000 Draft 4847 4394 47 USA Oriental vole Eothenomys miletus by Chinese plague experts during daily surveillance in Jianchuan county in China China Oriental vole Eothenomys miletus by Chinese plague experts during daily surveillance in Jianchuan county in China Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic plague Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis bv Orientalis F1991016 F1991016 Orientalis Yersinia pestis biovar Orientalis str. F1991016 Gi01280 Genome incomplete Public J. Craig Venter Institute NIH-NIAID YpF Animal Pathogen, Medical, Human Pathogen 404214 17681 001720_GCAT 266674 641736228 NZ_ABAT00000000 Draft 4892 4420 47 USA Rattus flavipectus by Chinese plague experts during daily surveillance in Cangyuan county in China China Rattus flavipectus by Chinese plague experts during daily surveillance in Cangyuan county in China 23.146729 99.246216 Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic plague Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis bv Mediaevalis K1973002 K1973002 Mediaevalis Yersinia pestis biovar Mediaevalis str. K1973002 Gi01281 Genome incomplete Public J. Craig Venter Institute NIH-NIAID YpK Animal Pathogen, Medical, Human Pathogen 404216 17687 001721_GCAT 270257 641736243 NZ_AAYT00000000 Draft 4720 4337 47 USA Himalayan marmot Marmota himalaya by Chinese plague experts during daily surveillance in Hetian county in China China Himalayan marmot Marmota himalaya by Chinese plague experts during daily surveillance in Hetian county in China Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic plague Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia BACTERIAL Yersinia pestis Madagascar Madagascar Gi01282 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Medical, Human Pathogen 632 001722_GCAT 35957 0 0 0 47 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic and Pneumonic plague Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia BACTERIAL Yersinia pestis 195/P 195/P Gi01744 Genome incomplete Public Univ of Washington Animal Pathogen, Medical, Human Pathogen, Biothreat 632 001724_GCAT 35957 0 0 0 47 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic and Pneumonic plague Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis FV-1 FV-1 Yersinia pestis FV-1 Gi01507 Genome incomplete Public Arizona State Univ YpesF Animal Pathogen, Medical, Human Pathogen, Biothreat 375450 16429 001725_GCAT 641736211 NZ_AAUB00000000 Draft 4472 4826 47.6 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic and Pneumonic plague Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis CA88-4125 CA88-4125 Yersinia pestis CA88-4125 Gi01959 Genome incomplete Public Los Alamos National Laboratory, DOE Joint Genome Institute Keim P Paul.Keim@nau.edu YPE Animal Pathogen, Medical, Human Pathogen, Biothreat 412420 18241 002585_GCAT 236738 640963031 NZ_ABCD00000000 Draft 2 Kb, 6 Kb Phred/Phrap/Consed 15x 4700 4099 0 Sanger USA Human case at Fort Hunter Liggett in Monterey County, California, in 1988 1988 USA Monterey County, California 35.985007 -121.245346 Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic and Pneumonic plague Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Orientalis IP275 IP275 Orientalis Yersinia pestis biovar Orientalis str. IP275 Gi01487 Genome incomplete Public J. Craig Venter Institute Ypesb Animal Pathogen, Medical, Human Pathogen, Biothreat 373665 16376 001727_GCAT 264308 638341243 NZ_AAOS00000000 Draft 3-4Kb, 4-6Kb 8x 5081 4413 1 1 47 Sanger USA Madagascar in 1995 from a human case of bubonic plague 1995 Madagascar in 1995 from a human case of bubonic plague Homo sapiens Patient with bubonic plague Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic and Pneumonic plague Host Motile Pathogen Heterotroph Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Zobellia BACTERIAL Zobellia galactanivorans DsijT DsijT Zobellia galactanivorans Gi01090 Genome incomplete Public Genoscope Barbe V vbarbe@genoscope.cns.fr Environmental 63186 16099 001728_GCAT 142970 0 12x 4100 0 0 Sanger France Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Fresh water Motile Polymer degrader Heterotroph, Chemoorganotroph Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Zymomonas BACTERIAL Zymomonas mobilis Gi00706 Genome incomplete Proprietary Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Bioenergy, Energy production, Biotechnological, Biofuels 542 001729_GCAT 50955 0 1833 1886 0 USA Facultative Rod-shaped Mesophile gram- Free living None Motile Ethanol production Bacteria Proteobacteria Deltaproteobacteria Myxococcales Myxococcaceae Anaeromyxobacter Anaeromyxobacter dehalogenans BACTERIAL Anaeromyxobacter dehalogenans 2CP-1 2CP-1 Anaeromyxobacter dehalogenans 2CP-1 ATCC BAA-258 Yes Gc00932 Gi01321 Genome Complete and Published Public DOE Joint Genome Institute DOE Beliaev AS alex.beliaev@pnl.gov A2cp1 2009-01-12 Unpublished Environmental, Bioremediation 455488 20095 001730_GCAT 263579 643348507 NC_011891 Complete 5029 4473 1 0 74 USA Stream sediment near Lansing, Michigan 1993 USA Lansing, Michigan 42.733621 -84.546582 Anaerobe Rod-shaped Sporulating Mesophile gram- Free living None Soil, Sediment Motile Heterotroph Bacteria Proteobacteria Deltaproteobacteria Myxococcales Myxococcaceae Anaeromyxobacter Anaeromyxobacter sp. K BACTERIAL Anaeromyxobacter sp K K Anaeromyxobacter sp. K Gc00848 Gi01323 Genome Complete and Published Public DOE Joint Genome Institute DOE Beliaev A alex.beliaev@pnl.gov AnaeK 2008-08-15 Unpublished Bioremediation, Environmental, Biotechnological 447217 19743 001732_GCAT 241715 642555106 NC_011145 Complete 5061 4551 1 0 74 Sanger USA Anaerobe Rod-shaped Sporulating Mesophile gram- Free living None Soil Motile Heterotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia ambifaria BACTERIAL Burkholderia ambifaria MEX-5 MEX-5 Burkholderia ambifaria MEX-5 Gi01586 Genome Permanent Draft Public DOE Joint Genome Institute DOE Brune A microbes@cuba.jgi-psf.org BamMEX Agricultural, Biotechnological, Biocontrol 396597 20667 001733_GCAT 641736149 NZ_ABLK00000000 Complete Level 1: Standard Draft 7855 7191 67 USA Mexico Mexico Mexico Facultative Rod-shaped Nonsporulating Mesophile gram- Teosinte None Rhizosphere, Host, Rhizosphere-colonizing Motile Pollutant degrader, Nitrogen fixation Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia ambifaria BACTERIAL Burkholderia ambifaria IOP40-10 IOP40-10 Burkholderia ambifaria IOP40-10 Gi01587 Genome Permanent Draft Public DOE Joint Genome Institute DOE Tiedje J tiedjej@msu.edu BamIOP Agricultural, Biotechnological, Biocontrol 396596 20669 001734_GCAT 641736154 NZ_ABLC00000000 Complete Level 1: Standard Draft 7689 7034 66.3 USA Rhizosphere of a native tall grass prairie in Iowa USA Iowa Facultative Rod-shaped Nonsporulating Mesophile gram- Grass None Rhizosphere, Host, Rhizosphere-colonizing 28 Motile Nitrogen fixation, Pollutant degrader Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia graminis BACTERIAL Burkholderia graminis C4D1M C4D1M Burkholderia graminis C4D1M CIP 106649, ATCC 700544, LMG 18924, CCUG 42231 Yes Gi01588 Genome incomplete Public DOE Joint Genome Institute DOE Tiedje J tiedjej@msu.edu BgramDRAFT Agricultural, Biotechnological, Biocontrol 396598 20537 001735_GCAT 641736151 NZ_ABLD00000000 Draft 7477 6839 62.9 USA "rhizoplane sample of a corn senescent root system in Cote Saint Andre, France" France Cote Saint Andre, France 45.394173 5.259637 Maize Facultative Rod-shaped Nonsporulating Mesophile gram- None Host, Rhizosphere-colonizing, Rhizosphere 28 Motile Pollutant degrader, Nitrogen fixation Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia ambifaria BACTERIAL Burkholderia ambifaria MC40-6 MC40-6 Burkholderia ambifaria MC40-6 Gc00761 Gi01324 Genome Complete and Published Public DOE Joint Genome Institute DOE Tiedje J tiedjej@msu.edu BamMC406 2008-04-03 Unpublished Agricultural, Biocontrol, Medical, Human Pathogen, Biotechnological 398577 17411 001736_GCAT 263782 641522608 NC_010552, NC_010551, NC_010557 Complete 7339 6964 3 1 66.4 USA cystic fibrosis patient cystic fibrosis patient Homo sapiens Patient with cystic fibrosis Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Cepacia syndrome Rhizosphere, Host, Rhizosphere-colonizing Motile Pathogen, Pollutant degrader, Nitrogen fixation Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cenocepacia BACTERIAL Burkholderia cenocepacia MC0-3 MC0-3 Burkholderia cenocepacia MC0-3 Gc00744 Gi01325 Genome Complete and Published Public DOE Joint Genome Institute DOE Tiedje J tiedjej@msu.edu Bcenmc03 2008-03-13 Unpublished Agricultural, Plant Pathogen, Medical, Human Pathogen 406425 17929 001737_GCAT 174527 641522609 NC_010512, NC_010508, NC_010515 Complete 7900 7254 3 0 66.6 USA Soil associated with maize roots Soil associated with maize roots Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Chronic infection, Necrotizing Pneumonia Host Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia multivorans BACTERIAL Burkholderia multivorans ATCC 17616 ATCC 17616 Burkholderia multivorans ATCC 17616 ATCC 17616 Gc00689 Gi01326 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bmul 2007-11-15 Unpublished Medical, Human Pathogen 395019 17407 001738_GCAT 300050 641228482 NC_010087, NC_010086, NC_010084 Complete 6820 6453 3 1 66.7 Sanger, 454 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Cepacia syndrome Host 37 Motile Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia phymatum BACTERIAL Burkholderia phymatum STM815 STM815 Burkholderia phymatum STM815 DSM 17167, CCUG 47179, CIP 108236 Yes Gc00775 Gi01327 Genome Complete and Published Public DOE Joint Genome Institute DOE Lizotte-Waniewski M mlizotte@bio.umass.edu Bphy 2008-04-22 Unpublished Agricultural 391038 17409 001739_GCAT 40645 642555112 NC_010623, NC_010622 Complete 11x 6176 7574 2 2 62.3 Sanger USA Root nodule of Machaerium lunatum in French Guiana French Guyana Root nodule of Machaerium lunatum in French Guiana Facultative Rod-shaped Nonsporulating Mesophile gram- Free living None Host, Soil Motile Nitrogen fixation Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia phytofirmans BACTERIAL Burkholderia phytofirmans PsJN PsJN Burkholderia phytofirmans PsJN LMG 22146, CCUG 49060 Gc00795 Gi01328 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bphyt 2008-05-07 Unpublished Agricultural 398527 17463 001740_GCAT 283462 642555113 NC_010681, NC_010676 Complete 10.9x 8093 7487 2 1 62 Sanger USA Surface-sterilized onion roots Surface-sterilized onion roots Facultative Rod-shaped Nonsporulating Mesophile gram- Free living None Host, Soil 30 Motile Nitrogen fixation Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium cellulolyticum BACTERIAL Clostridium cellulolyticum H10 H10 Clostridium cellulolyticum H10 ATCC 35319, JCM 6584 Yes Gc00929 Gi01329 Genome Complete and Published Public DOE Joint Genome Institute DOE Zhou J jzhou@rccc.ou.edu Ccel 2009-01-13 Unpublished Bioenergy, Energy production, Biotechnological, Biofuels 394503 17419 001741_GCAT 188553 643348528 NC_011898 Complete 11.5x 4068 3390 1 0 37 Sanger, 454 USA Decayed grass in compost pile Decayed grass in compost pile Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Soil Motile Cellulose degrader Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium leptum BACTERIAL Clostridium leptum DSM 753 DSM 753 Clostridium leptum DSM 753 ATCC 29065, DSM 753 Yes Gi01921 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi CLOLEP Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 428125 18923 002545_GCAT 227 641380427 NZ_ABBR00000000, ABCB00000000 Draft 45287 PCAP 8.6x GeneMark v3.3, Glimmer2 v2.13 83 3270 3979 68 454-GS20 USA Human feces DSM 753 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Host, Human intestinal microflora Motile Chemoorganotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas testosteroni BACTERIAL Comamonas testosteroni KF-1 KF-1 Comamonas testosteroni KF-1 DSM14576 No Gi01330 Genome Permanent Draft Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org CtesDRAFT Biotechnological 399795 17465 001742_GCAT 186840 639857012 NZ_AAUJ00000000 Complete Level 1: Standard Draft 12.8x 5906 5620 61.8 Sanger USA Activated sludge Activated sludge Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Sludge Motile Surfactant-degrading Bacteria Chloroflexi Dehalococcoidetes Dehalococcoides Dehalococcoides sp. GT BACTERIAL Dehalococcoides sp. GT GT Gi01331 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bioremediation, Environmental, Ecological, Biotechnological 633145 36645 001743_GCAT 0 0 0 0 USA Anaerobe Nonsporulating Mesophile Free living None Groundwater, Fresh water Motile Dechlorinates Tetrachloroethene Chemolithotroph Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobacteraceae Desulfatibacillum Desulfatibacillum alkenivorans BACTERIAL Desulfatibacillum alkenivorans AK-01 AK-01 Desulfatibacillum alkenivorans AK-01 Gc00913 Gi01333 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org DalkDRAFT 2008-12-24 Unpublished Environmental, Biotechnological 439235 19449 001745_GCAT 249636 643348536 NC_011768 Complete 6517 5428 1 0 54 USA "Sediment from the Arthur Kill, NJ/NY waterway" USA Sediment from the Arthur Kill, NJ/NY waterway 40.437746 -74.20347 Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Fresh water 26 - 28 Nonmotile Sulfate reducer, Alkane degrader Bacteria Cyanobacteria Chroococcales BACTERIAL Cyanobacterium sp JSC-1 JSC-1 Gi02032 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Environmental, Biotechnological 102234 002661_GCAT 0 0 0 0 USA Mesophile gram- Free living None Fresh water Photosynthetic Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Enterobacter Enterobacter sp. BACTERIAL Enterobacter sp R558-1 R558-1 Gi02034 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 42895 002663_GCAT 10121 0 0 0 0 USA Facultative Rod-shaped Mesophile gram- Free living None Host, Endophyte Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli B, ATCC 11303 B, ATCC 11303 ATCC 11303 No Gi01337 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Medical 37762 001749_GCAT 215902 0 Draft 4651 4360 50 USA K-12 derivative K-12 derivative Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli B REL606 REL606 Escherichia coli B str. REL606 Gc01056 Gi01702 Genome Complete and Published Public International E. coli B Consortium, KRIBB, Genoscope ECB 2009-07-15 Unpublished Medical 413997 18281 001750_GCAT 0 NC_012967 Complete Level 6: Finished 4629 4378 1 2 50 International Jihyun F. Kim (jfk@kribb.re.kr) or Richard E. Lenski (lenski@msu.edu) Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 GZ-021210/cattle GZ-021210/cattle Escherichia coli O157:H7 str. GZ-021210/cattle Gi01703 Genome incomplete Public South China Agricultural Univ Medical, Human Pathogen 410290 18005 001751_GCAT 0 0 0 0 International Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Hemorrhagic colitis Host, Human intestinal microflora Motile Pathogen Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Geobacteraceae Geobacter Geobacter lovleyi BACTERIAL Geobacter lovleyi SZ SZ Geobacter lovleyi SZ DSM 17278, ATCC BAA-1151 Yes Gc00815 Gi01338 Genome Complete and Published Public DOE Joint Genome Institute DOE Loeffler F ce.gatech.edu Glov 2008-06-05 Unpublished Biotechnological 398767 17423 001752_GCAT 197492 642555130 NC_010814 Complete 3917 3777 1 1 54.8 USA Noncontaminated creek sediment in June 2002 near Seoul South Korea June 2002 South Korea Noncontaminated creek sediment in June 2002 near Seoul South Korea 37.566535 126.977969 Anaerobe Rod-shaped Nonsporulating Mesophile 6.8 gram- Free living Singles None Fresh water, Sediment, Soil 35 Motile Metal reducer Chemolithotroph Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Geobacteraceae Geobacter Geobacter sp. M21 BACTERIAL Geobacter sp. M21 M21 Gc01078 Gi02329 Genome Complete and Published Public DOE Joint Genome Institute DOE Lovley D dlovley@microbio.umass.edu 2009-07-07 Unpublished Biotechnological 443144 20729 002983_GCAT 222540 642791601 NC_012918 Complete Level 6: Finished 4745 4227 1 0 60 USA in situ uranium bioremediation experiment in Rifle, Colorado, USA USA Rifle, Colorado, USA 39.538845 -107.783363 Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Soil, Sediment, Fresh water Motile Metal reducer Chemolithotroph Bacteria Nitrospirae Nitrospira (class) Nitrospirales Nitrospiraceae Leptospirillum BACTERIAL Leptospirillum ferrooxidans DSM 2705 DSM 2705 ATCC 29047, DSM 2705, VKM B-1339 Yes Gi01527 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Bioleaching 180 001754_GCAT 245966 0 2500 0 0 USA copper deposits in Armenia Armenia 10758852 copper deposits in Armenia Aerobe Spiral-shaped Nonsporulating Mesophile 1.3 - 4.0 gram- Free living None Fresh water Motile Iron oxidizer, Acidophile Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Methylobacteriaceae Methylobacterium Methylobacterium chloromethanicum BACTERIAL Methylobacterium chloromethanicum CM4 CM4 Methylobacterium chloromethanicum CM4 VKM B-2223, NCIMB 13688 Gc00907 Gi01341 Genome Complete and Published Public DOE Joint Genome Institute DOE Marx C cmarx@oeb.harvard.edu MchlDRAFT 2008-12-19 Unpublished Environmental, Biotechnological 440085 19527 001756_GCAT 239664 643348563 NC_011757 Complete 5777 5765 1 2 68 USA Soil at a petrochemical factory in Tatarstan Russia Russia Soil at a petrochemical factory in Tatarstan Russia 47.800499 13.04441 Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Soil 30 Motile Methylotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Methylobacteriaceae Methylobacterium Methylobacterium extorquens BACTERIAL Methylobacterium extorquens PA1 PA1 Methylobacterium extorquens PA1 Gc00701 Gi01342 Genome Complete and Published Public DOE Joint Genome Institute DOE Marx C cmarx@oeb.harvard.edu Mext 2007-12-20 Unpublished Methanol production, Biotechnological 419610 18637 001757_GCAT 254667 641228497 NC_010172 Complete 5471 5012 1 0 68 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs None 25 - 30 Motile Methylotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Methylobacteriaceae Methylobacterium Methylobacterium nodulans BACTERIAL Methylobacterium nodulans ORS2060 ORS2060 Methylobacterium nodulans ORS 2060 LMG 21967, CNCM I 2342 Gc00935 Gi01343 Genome Complete and Published Public DOE Joint Genome Institute DOE Marx CJ cmarx@oeb.harvard.edu Mnod 2009-01-12 Unpublished Biotechnological, Agricultural 460265 20477 001758_GCAT 251181 643348564 NC_011894 Complete 7724 7356 1 7 68 USA Root nodules from the legume Crotalaria Root nodules from the legume Crotalaria Crotalaria Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs None Host Motile Nitrogen fixation Methylotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Methylobacteriaceae Methylobacterium Methylobacterium populi BACTERIAL Methylobacterium populi BJ001 BJ001 Methylobacterium populi BJ001 ATCC BAA-705, NCIMB 13946 Yes Gc00771 Gi01344 Genome Complete and Published Public DOE Joint Genome Institute DOE Marx CJ cmarx@oeb.harvard.edu Mpop 2008-04-09 Unpublished Biotechnological, Agricultural 441620 19559 001759_GCAT 81314 642555139 NC_010725 Complete 5800 5538 1 2 69.3 USA Populus Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs None Host, Endophyte 20 - 30 Motile Methylotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Methylobacteriaceae Methylobacterium Methylobacterium radiotolerans BACTERIAL Methylobacterium radiotolerans JCM 2831 JCM 2831 Methylobacterium radiotolerans JCM 2831 DSM 1819, ATCC 27329, JCM 2831 Yes Gc00752 Gi01345 Genome Complete and Published Public DOE Joint Genome Institute DOE Marx CJ cmarx@oeb.harvard.edu Mrad2831 2008-03-21 Unpublished Biotechnological 426355 18817 001760_GCAT 264721 641522638 NC_010505 Complete 6077 6588 1 8 71.5 USA Legumes Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs None Host Motile Nitrogen fixation Methylotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. 4-46 BACTERIAL Methylobacterium sp 4-46 4-46 Methylobacterium sp. 4-46 Gc00857 Gi01346 Genome Complete and Published Public DOE Joint Genome Institute DOE Marx CJ cmarx@oeb.harvard.edu M446 2008-02-20 Unpublished Biotechnological 426117 18809 001761_GCAT 259855 641522639 NC_010511 Complete 7659 7206 1 2 71.4 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Motile Methylotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Beijerinckiaceae Methylocapsa Methylocapsa acidiphila BACTERIAL Methylocapsa acidiphila B2T B2T NCIMB 13765, DSM 13967 Yes Gi01550 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 395964 001762_GCAT 0 0 0 63.1 USA Acidic Sphagnum peat bog Acidic Sphagnum peat bog Aerobe Coccus-shaped Psychrotolerant 4.2 - 7.2 gram- Free living None 11 - 32 Nonmotile Methane oxidation, Acidophile Methylotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Beijerinckiaceae Methylocella Methylocella silvestris BACTERIAL Methylocella silvestris BL2 BL2 Methylocella silvestris BL2 DSM 15510, NCIMB 13906 Yes Gc00900 Gi01549 Genome Complete and Published Public DOE Joint Genome Institute DOE Dunfield P P.Dunfield@gns.cri.nz MsilDRAFT 2008-12-15 Unpublished Biotechnological 395965 20635 001763_GCAT 64189 643348565 NC_011666 Complete 4305 4386 1 0 63.1 USA Acidic forest cambisol near Marburg Germany Germany Acidic forest cambisol near Marburg Germany 50.814788 8.769239 Aerobe Rod-shaped Psychrotolerant 4.5 - 7 gram- Free living None 11 - 49 Nonmotile Methane oxidation, Acidophile Methylotroph Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobulbaceae Desulfobulbus Desulfobulbus propionicus BACTERIAL Desulfobulbus propionicus Lindhorst, DSM 2032 Lindhorst, DSM 2032 Desulfobulbus propionicus DSM 2032 ATCC 33891, DSM 2032 Yes Gi02535 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 577650 32993 003262_GCAT 105497 0 0 0 0 USA Freshwater mud in Germany Germany Freshwater mud in Germany Anaerobe Rod-shaped Mesophile 6.6 - 7.5 gram- Free living None Sediment, Fresh water, Marine 37 Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Ilyobacter Ilyobacter polytropus BACTERIAL Ilyobacter polytropus CuHBu1, DSM 2926 CuHBu1, DSM 2926 Ilyobacter polytropus DSM 2926 DSM 2926 Yes Gi02536 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 572544 32577 003263_GCAT 0 0 0 32 USA Marine mud from Germany Germany Marine mud from Germany Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Marine 30 Nonmotile Chemoorganotroph Archaea Euryarchaeota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanofollis ARCHAEAL Methanofollis liminatans GKZPZ, DSM 4140 GKZPZ, DSM 4140 DSM 4140 Yes Gi02537 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org GEBA 2201 003264_GCAT 328 0 0 0 60 USA Industrial wastewater treatment plant from Germany Germany Industrial wastewater treatment plant from Germany Anaerobe Mesophile gram- Free living None Wastewater 37 Methanogen Bacteria Planctomycetes Planctomycetacia Planctomycetales Planctomycetaceae Pirellula Pirellula staleyi BACTERIAL Pirellula staleyi DSM 6068 DSM 6068 Pirellula staleyi DSM 6068 ATCC 27377, DSM 6068, ICPB 4128 Yes Gi02538 Genome complete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org GEBA 530564 29845 003265_GCAT 203514 0 Complete Level 6: Finished 8kb, 454, Illumina 70045 Sanger, 450004 pyrosequence pMCL200 Newbler version 1.1.03.24, PGA 10.6x Sanger; 20.4x pyrosequence Prodigal 1.4, GenePRIMP 6196 4822 1 0 57.4 Sanger, Illumina, 454-FLX USA Freshwater Lake Lansing, Michigan 1973 USA Lake Lansing, Michigan 42.759 -84.399 Aerobe Sphere-shaped Nonsporulating Mesophile 7 0.9-1.0 um 1.0-1.5 um gram- Free living Singles None Fresh water 20 - 25 Motile Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Olsenella Olsenella uli BACTERIAL Olsenella uli VPI, DSM 7084 VPI, DSM 7084 DSM 7084, ATCC 49627 Yes Gi02539 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org GEBA 633147 36641 003266_GCAT 46592 0 0 0 0 USA Human gingival crevice Human gingival crevice Homo sapiens Oral Gingival crevices Anaerobe Mesophile gram+ Free living None 37 Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XVII. Incertae Sedis Sulfobacillus BACTERIAL Sulfobacillus thermosulfidooxidans AT-1, DSM 9293 AT-1, DSM 9293 VKM B-1269, DSM 9293 Yes Gi02540 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org GEBA 28034 003267_GCAT 14341 0 0 0 0 USA Spontaneously heated ore deposit from Eastern Kazakhstan Kazakhstan Spontaneously heated ore deposit from Eastern Kazakhstan Sporulating Thermophile gram+ Free living None 50 Sulphide oxidizer, Iron oxidizer, Acidophile Mixotroph, Autotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XVII. Incertae Sedis Sulfobacillus BACTERIAL Sulfobacillus acidophilus NAL, DSM 10332 NAL, DSM 10332 DSM 10332 Yes Gi02541 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org GEBA 53633 003268_GCAT 95123 0 0 0 56 USA Sporulating Thermophile gram+ Free living None Sulphide oxidizer, Iron oxidizer, Acidophile Mixotroph, Autotroph Bacteria Synergistetes [Clostridiales] Family XV. Incertae Sedis Aminomonas BACTERIAL Aminomonas paucivorans GLU-3, DSM 12260 GLU-3, DSM 12260 ATCC BAA-6, DSM 12260 Yes Gi02542 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 81412 003269_GCAT 1647 0 Draft 80 2589 2534 68 USA Anaerobic lagoon of a dairy wastewater treatment plant in Colombia Colombia Anaerobic lagoon of a dairy wastewater treatment plant in Colombia Obligate anaerobe Rod-shaped Nonsporulating Mesophile 7.5 0.3 um 4 - 6 um gram- Free living Pairs, Singles None Wastewater, Fresh water 35 Nonmotile Aminoacid degrading Bacteria Firmicutes Clostridia Thermoanaerobacterales Thermoanaerobacterales Family IV. Incertae Sedis Mahella BACTERIAL Mahella australiensis 50-1 BON, DSM 15567 50-1 BON, DSM 15567 CIP 107919, DSM 15567 Yes Gi02543 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org GEBA 252966 003270_GCAT 106330 0 0 0 55.5 USA "Riverslea oil field in the Bowen-Surat basin, Australia" Australia Riverslea oil field in the Bowen-Surat basin, Australia Anaerobe Rod-shaped Sporulating Thermophile 7.5 gram+ Free living None Oil fields 50 Motile Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Sulfurimonas Sulfurimonas autotrophica BACTERIAL Sulfurimonas autotrophica OK10, DSM 16294 OK10, DSM 16294 DSM 16294, JCM 11897, ATCC BAA-671 Yes Gi02544 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 563040 31347 003271_GCAT 81592 0 Draft 2134 2280 36 454-Titanium USA Deep-sea sediments at the Hatoma Knoll in the Mid-Okinawa Trough hydrothermal field in Japan Japan Deep-sea sediments at the Hatoma Knoll in the Mid-Okinawa Trough hydrothermal field in Japan 27.266667 127.166667 Rod-shaped Mesophile 4.5 - 9.0 gram- Free living None Sediment, Marine 24 Motile Sulfur oxidizer Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Ethanoligenens Ethanoligenens harbinense BACTERIAL Ethanoligenens harbinense YUAN-3T, DSM 18485 YUAN-3T, DSM 18485 JCM 12961T, CGMCC 1.5033T, DSM 18485 Yes Gi02545 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 663278 39729 003272_GCAT 139189 0 0 0 47.8 USA Anaerobic activated sludge of molasses wastewater in a continuous stirred-tank reactor Anaerobic activated sludge of molasses wastewater in a continuous stirred-tank reactor Obligate anaerobe Rod-shaped Nonsporulating Mesophile 3.5 - 9.0 gram+ Free living None Sludge 20 - 44 Motile Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Peptoniphilus Peptoniphilus asaccharolyticus BACTERIAL Peptoniphilus asaccharolyticus UW 228, DSM 20463 UW 228, DSM 20463 Peptoniphilus asaccharolyticus DSM 20463 NCIB 10074, ATCC 14963, DSM 20463 Yes Gi02546 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 573058 32601 003273_GCAT 14287 0 0 0 0 USA Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Urogenital infection 37 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Arcanobacterium Arcanobacterium haemolyticum BACTERIAL Arcanobacterium haemolyticum CCM, DSM 20595 CCM, DSM 20595 NCTC 8452, CCM 5947, ATCC 9345, DSM 20595 Yes Gi02547 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org GEBA, Medical, Human Pathogen 644284 37925 003274_GCAT 24783 0 0 0 0 USA Blood Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Tonsillitis, Osteomyelitis, Pharyngitis, Sepsis Blood, Host 37 Nonmotile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Coriobacterium BACTERIAL Coriobacterium glomerans PW2, DSM 20642 PW2, DSM 20642 DSM 20642, ATCC 49209, JCM 10262 Yes Gi02548 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org GEBA 33871 003275_GCAT 11367 0 0 0 0 USA Intestinal tract of the red soldier bug Intestinal tract of the red soldier bug Intestinal tract Obligate anaerobe Rod-shaped Nonsporulating Mesophile gram+ Pyrrhocoris apterus Singles None Intestinal tract, Host 30 Nonmotile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Sporichthyaceae Sporichthya BACTERIAL Sporichthya polymorpha DSM 43042 DSM 43042 ATCC 23823, DSM 43042, IFO 12702, KCC A-0089, NBRC 12702, IMRU 3913 Yes Gi02549 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org GEBA 35751 003276_GCAT 11367 0 0 0 0 USA Greenhouse soil Greenhouse soil Mesophile gram+ Free living None Soil 28 Motile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida BACTERIAL Pseudomonas putida GB-1 GB-1 Pseudomonas putida GB-1 Gc00719 Gi01349 Genome Complete and Published Public DOE Joint Genome Institute DOE McCarthy J jmmcarthy@ucsd.edu PputGB1 2008-02-05 Unpublished Biocatalysis, Production of bioplastics, Environmental, Bioremediation 76869 17629 001766_GCAT 209007 641522645 NC_010322 Complete 16x 6078 5611 1 0 61 Sanger, 454 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Soil, Fresh water, Host Motile Non-Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida BACTERIAL Pseudomonas putida W619 W619 Pseudomonas putida W619 Gc00738 Gi01350 Genome Complete and Published Public DOE Joint Genome Institute DOE van der Lelie D vdlelied@bnl.gov PputW619 2008-03-11 Unpublished Agricultural, Environmental, Bioremediation 390235 17053 001767_GCAT 190201 641522646 NC_010501 Complete 11x 5774 5389 1 0 61.4 Sanger USA Black Cottonwood tree Black Cottonwood tree Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Host, Endophyte, Soil Motile Non-Pathogen Heterotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia pickettii BACTERIAL Ralstonia pickettii 12J 12J Ralstonia pickettii 12J Gc00794 Gi01351 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Rpic 2008-05-07 Unpublished Medical, Human Pathogen 402626 17631 001768_GCAT 285017 642555151 NC_010682, NC_010678 Complete 10x 5244 5092 2 1 63.7 Sanger USA copper-contaminated sediment from a lake in Michigan USA Michigan Aerobe Rod-shaped Mesophile gram- Free living Nosocomial infection Host, Soil, Fresh water, Sediment Motile Pathogen Heterotroph, Heterotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia pickettii BACTERIAL Ralstonia pickettii 12D 12D Ralstonia pickettii 12D Gc01040 Gi01352 Genome Complete and Published Public DOE Joint Genome Institute DOE Marsh M marsht@msu.edu Rpic 2009-06-22 Unpublished Medical, Human Pathogen 428406 18937 001769_GCAT 243860 640963017 NC_012856, NC_012857 Complete Level 6: Finished 5641 5462 2 3 63 Sanger USA Copper-contaminated sediment from a lake in Michigan USA Copper-contaminated sediment from a lake in Michigan Aerobe Rod-shaped Mesophile gram- Free living Nosocomial infection Fresh water, Host, Soil Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella halifaxensis BACTERIAL Shewanella halifaxensis HAW-EB4 HAW-EB4 Shewanella halifaxensis HAW-EB4 NCIMB 14093, DSM 17350 Yes Gc00720 Gi01354 Genome Complete and Published Public DOE Joint Genome Institute DOE Zhao J-S Jian-shen.zhao@cnrc-nrc.gc.ca Shal 2008-02-07 Unpublished Biotechnological, Environmental, Degrades RDX 458817 20241 001771_GCAT 267931 641522648 NC_010334 Complete 5226 4617 1 0 45 USA Sediment of the Emerald Basin at 215m depth offshore of Halifax Harbour in the Atlantic Ocean Canada Halifax Harbour in the Atlantic Ocean, Canada 44.088769 -62.738342 Facultative Rod-shaped Nonsporulating Psychrophile gram- Free living Pairs, Singles None Marine, Sediment 10 Motile Denitrifying Heterotroph Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella woodyi BACTERIAL Shewanella woodyi MS32, ATCC 51908 MS32, ATCC 51908 Shewanella woodyi ATCC 51908 ATCC 51908 Gc00745 Gi01357 Genome Complete and Published Public DOE Joint Genome Institute DOE Zhao JS Jian-Shen.Zhao@cnrc-nrc.gc.ca Swoo 2008-03-13 Unpublished Degrades RDX, Biotechnological 392500 17455 001774_GCAT 183742 641522649 NC_010506 Complete 12.4x 5935 5242 1 0 43.7 Sanger USA "Sediment; 5,110 m depth from the Strait of Gibraltar, Mediterranean Sea" Strait of Gibraltar, Mediterranean Sea 35.978923 -5.484638 Facultative Rod-shaped Nonsporulating Psychrophile gram- Free living Pairs, Singles None Marine 25 Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Stenotrophomonas Stenotrophomonas maltophilia BACTERIAL Stenotrophomonas maltophilia R551-3 R551-3 Stenotrophomonas maltophilia R551-3 Gc00836 Gi01359 Genome Complete and Published Public DOE Joint Genome Institute DOE Taghavi S taghavis@bnl.gov Smal 2008-07-25 Unpublished Medical, Human Pathogen 391008 17107 001776_GCAT 183636 642555162 NC_011071 Complete 12x 4573 4129 1 0 66 Sanger USA Aerobe Rod-shaped Mesophile gram- Free living Urinary infection, Respiratory infection, Nosocomial infection, Blood infection Plants, Soil, Fresh water, Host Pathogen, Nonfermentative Bacteria Firmicutes Clostridia Thermoanaerobacterales Thermoanaerobacterales Family III. Incertae Sedis Thermoanaerobacterium BACTERIAL Thermoanaerobacterium xylanolyticum LX11 LX11 DSM 7097 Yes Gi01360 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 28896 001777_GCAT 356922 0 3000 0 0 USA Anaerobe Rod-shaped Sporulating Thermophile gram+ Free living Pairs, Singles None Fresh water Motile Saccharolytic Bacteria Firmicutes Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter italicus BACTERIAL Thermoanaerobacter italicus Ab9, DSM 9252 Ab9, DSM 9252 Thermoanaerobacter italicus Ab9 DSM 9252 Yes Gi02024 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 580331 33157 002653_GCAT 38062 0 NZ_ACVH00000000 Draft 111 2352 2493 33 USA Mud, thermal spa; Italy, Abano Terme Italy Mud, thermal spa; Italy, Abano Terme 45.360542 11.789381 Anaerobe Rod-shaped Sporulating Thermophile gram+ Free living Pairs, Singles None Mud, Fresh water 70 Motile Saccharolytic Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Thermosinus Thermosinus carboxydivorans BACTERIAL Thermosinus carboxydivorans Nor1 Nor1 Thermosinus carboxydivorans Nor1 VKM B-2281, DSM 14886 Yes Gi01361 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org TcarDRAFT Biotechnological 401526 17587 001778_GCAT 184496 640196202 NZ_AAWL00000000 Draft 11x 3000 2948 51.7 Sanger USA Hot spring at Norris Basin Yellowstone National Park USA Hot spring at Norris Basin Yellowstone National Park Anaerobe Rod-shaped Thermophile gram+ Free living None Fresh water, Hot spring 60 Motile Carbon monoxide oxidizer Chemolithotroph, Carboxydotroph Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Acidianus ARCHAEAL Acidianus brierleyi Acidianus brierleyi Gi00001 Genome incomplete Public Univ of Copenhagen Garrett RA garrett@mermaid.molbio.ku.dk Biotechnological, Bioleaching 41673 199 001779_GCAT 975 0 1800 0 0 Denmark Facultative Thermophile gram- Free living None Fresh water Nonmotile Sulfur metabolizing, Acidophile Lithotroph Archaea Thaumarchaeota Cenarchaeales Cenarchaeaceae Cenarchaeum Cenarchaeum symbiosum ARCHAEAL Cenarchaeum symbiosum. B B Cenarchaeum symbiosum B Gi00135 Metagenome incomplete Proprietary DOE Joint Genome Institute, MBARI DOE DeLong EF delong@mit.edu Evolutionary 414005 16291 001780_GCAT 69639 0 NS_000190 Draft 52 2082 0 0 USA Aerobe Rod-shaped Nonsporulating Psychrophile gram- Symbiotic None Host, Fresh water Symbiont Archaea Euryarchaeota Thermoplasmata Thermoplasmatales Ferroplasmaceae Ferroplasma Ferroplasma acidarmanus ARCHAEAL Ferroplasma acidarmanus Fer1 Fer1 Ferroplasma acidarmanus fer1 Gi00249 Metagenome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org FaciDRAFT Environmental, Bioremediation 333146 239 001781_GCAT 133209 638341092 NZ_AABC00000000 Draft 1865 1786 36.8 Sanger USA 5-way CG region of Richmond Mine at Iron Mountain, CA USA Richmond Mine at Iron Mountain, CA "40,670,225" "-122,522,352" Facultative Rod-shaped Mesophile gram- Free living None Nonmotile Acidophile Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium salinarum ARCHAEAL Halobacterium salinarum RI RI Halobacterium salinarum R1 DSM 671 No Gc00726 Gi00290 Genome Complete and Published Public Max Planck Institute Pfeiffer F fpf@biochem.mpg.de OE 2008-02-19 Genomics 91, 335-46 Biotechnological 478009 106 001782_GCAT 261960 641522631 NC_010364 Complete 1.4 Kb Phred/Phrap/Consed 9.6x ORPHEUS 2000 2804 1 4 68 Germany Obligate aerobe Rod-shaped Nonsporulating Thermophile Halophile gram- Free living None 50 Motile Chemoorganotroph Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Halobiforma Halobiforma lacisalsi ARCHAEAL Halobiforma lacisalsi AJ5 AJ5 Halobiforma lacisalsi AJ5 CGMCC 1.3738, JCM 12983 Gi01397 Genome incomplete Public Zhejiang Univ Biotechnological 358396 16192 001783_GCAT 0 0 0 64.9 China Ayakekumsalt lake in Xinjian China at an altitude of 3880m China Ayakekumsalt lake in Xinjian China at an altitude of 3880m "43,790,939" "87,606,117" 3880 meters Facultative Mesophile Halophile gram- Free living None Fresh water Motile Neutrophilic Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Halobaculum ARCHAEAL Halobaculum gomorrense Halobaculum gomorrense Gi00721 Genome incomplete Public Institute for Systems Biology, UMBI NSF Goo Y ygoo@systemsbiology.org Biotechnological 43928 13229 001784_GCAT 594 0 0 0 70 USA Dead Sea Dead Sea "3,150,065" "3,549,099" Rod-shaped Mesophile Halophile gram- Free living None Fresh water Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Haloferax Haloferax volcanii ARCHAEAL Haloferax volcanii DS2 DS2 ATCC 29605 Yes Gi00293 Genome incomplete Public Univ of Scranton, Integrated Genomics Inc Delvecchio V Vimbm@aol.com Biotechnological 309800 001785_GCAT 0 4200 0 0 USA Aerobe Disc-shaped Mesophile Halophile gram- Free living None Fresh water Motile Chemoorganotroph Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Haloferax Haloferax volcanii ARCHAEAL Haloferax volcanii DS2 DS2 Haloferax volcanii DS2 Gi00292 Genome incomplete Public J. Craig Venter Institute NSF Eisen JA http://www.tigr.org/~jeisen/ Biotechnological 309800 12524 001786_GCAT 0 4200 0 0 USA Aerobe Disc-shaped Mesophile Halophile gram- Free living None Fresh water Motile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Oceanospirillales Halomonadaceae Chromohalobacter Chromohalobacter salexigens BACTERIAL Halomonas elongata DSM 3043 DSM 3043 Chromohalobacter salexigens DSM 3043 DSM 3043 Yes Gi00713 Genome incomplete Public Hiram College, Purdue Univ, J. Craig Venter Institute Biotechnological, Environmental 290398 13230 001787_GCAT 48786 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile Halophile gram- Free living None Fresh water Motile Bacteria Firmicutes Clostridia Halanaerobiales Halanaerobiaceae Halothermothrix Halothermothrix orenii BACTERIAL Halothermothrix orenii H 168 H 168 Halothermothrix orenii H 168 DSM 9562 Yes Gc00927 Gi01049 Genome Complete and Published Public DOE Joint Genome Institute DOE Mavrommatis K KMavrommatis@lbl.gov Hore 2009-01-13 PLoS ONE 4, e4192 Biotechnological 373903 16377 001788_GCAT 643348557 NC_011899 Complete 12.5x GeneMark 2578 2366 1 0 39.6 Sanger, 454 USA Salted lake sediment Salted lake sediment Anaerobe Rod-shaped Thermophile Halophile gram- Free living Singles None Fresh water 60 Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Halorubrum Halorubrum lacusprofundi ARCHAEAL Halorubrum lacusprofundi ATCC 49239 ATCC 49239 Halorubrum lacusprofundi ATCC 49239 ATCC 49239 Yes Gc00952 Gi01050 Genome Complete and Published Public DOE Joint Genome Institute DOE Anderson I IJAnderson@lbl.gov Hlac 2009-02-04 Unpublished Biotechnological 416348 18455 001789_GCAT 643692025 NC_012029, NC_012028 Complete 4300 3184 2 1 58 USA Deep Lake, Antarctica Aerobe Rod-shaped Psychrophile Halophile gram- Free living None Fresh water 31 - 37 Motile Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Halorubrum ARCHAEAL Halorubrum lacusprofundi Halorubrum lacusprofundi Gi00720 Genome-Regions incomplete Public Institute for Systems Biology, UMBI NSF Goo Y ygoo@systemsbiology.org Biotechnological 2247 001790_GCAT 627 0 0 0 0 USA Aerobe Rod-shaped Psychrophile Halophile gram- Free living None Fresh water Motile Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter ruminantium ARCHAEAL Methanobrevibacter ruminantium M1 M1 DSM 1093 Yes Gi01112 Genome incomplete Public AgResearch Bioenergy, Biotechnological 634498 34681 001791_GCAT 95916 0 0 0 0 New Zealand Anaerobe Rod-shaped Mesophile gram- Free living Chains, Pairs None Nonmotile Methanogen Lithotroph Archaea Euryarchaeota Methanococci Methanococcales Methanococcaceae Methanothermococcus ARCHAEAL Methanothermococcus thermolithotrophicus Methanothermococcus thermolithotrophicus Gi00357 Genome incomplete Proprietary Molecular Dynamics, Integrated Genomics Inc Molecular Dynamics Feldman RA robert.feldman@am.apbiotech.com Energy production, Biotechnological 2186 13627 001793_GCAT 26 0 0 0 0 USA Anaerobe Coccus-shaped Thermophile gram- Free living None Fresh water 65 Motile Methanogen Lithotroph, Lithotroph Archaea Euryarchaeota Methanococci Methanococcales Methanococcaceae Methanococcus ARCHAEAL Methanococcus voltae Methanococcus voltae Gi00358 Genome incomplete Proprietary Molecular Dynamics, Integrated Genomics Inc Molecular Dynamics Feldman RA robert.feldman@am.apbiotech.com Carbon cycle, Energy production, Biotechnological 2188 13632 001794_GCAT 36 0 0 0 0 USA Anaerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Fresh water Motile Methanogen Lithotroph Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanohalobium ARCHAEAL Methanohalobium evestigatum Z-7303, DSM 3721 Z-7303, DSM 3721 OCM 161, DSM 3721 Yes Gi01749 Genome incomplete Public DOE Joint Genome Institute DOE Anderson I IJAnderson@lbl.gov Tree of Life 2322 001796_GCAT 425 0 3000 0 37 USA Microbial mat community in Crimea, Russia Russia Microbial mat community in Crimea, Russia 45.3453 34.49973 Anaerobe Thermophile Halophile 7 gram- Halophiles None Fresh water 50 Methanogen Lithotroph, Autotroph Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium ARCHAEAL Methanobacterium formicicum MF MF Gi01750 Genome incomplete Public DOE Joint Genome Institute DOE Anderson I IJAnderson@lbl.gov Tree of Life 2162 001797_GCAT 97554 0 1800 0 41 USA Sewage sludge digestor in Urbana Illinois USA Sewage sludge digestor in Urbana Illinois 40.106649 -88.195627 Mesophile gram- Free living None Fresh water, Host Methanogen Lithotroph, Lithotroph Archaea Euryarchaeota Archaeoglobi Archaeoglobales Archaeoglobaceae Ferroglobus Ferroglobus placidus ARCHAEAL Ferroglobus placidus AEDII12DO, DSM 10642 AEDII12DO, DSM 10642 Ferroglobus placidus DSM 10642 DSM 10642 Yes Gi01752 Genome incomplete Public DOE Joint Genome Institute DOE Anderson I IJAnderson@lbl.gov Tree of Life 589924 33635 001799_GCAT 53724 0 In progress 1900 0 43 USA Hallow submarine hydrothermal system at Vulcano Italy Italy Hallow submarine hydrothermal system at Vulcano Italy Anaerobe Coccus-shaped Hyperthermophile 7 gram- Free living None Fresh water, Hydrothermal vent 85 Motile Iron oxidizer Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Acidianus ARCHAEAL Acidianus sp JP7 JP7 Gi01753 Genome incomplete Public DOE Joint Genome Institute DOE Anderson I IJAnderson@lbl.gov Bioleaching, Biotechnological, Tree of Life 312539 001800_GCAT 113094 0 1900 0 31.1 USA Hydrothermal site in Papua New Guinea New Guinea Papua New Guinea "-631,499" "14,395,555" Facultative Thermophile gram- Free living None Fresh water 50 - 80 Nonmotile Iron oxidizer, Acidophile Lithotroph Archaea Euryarchaeota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanogenium Methanogenium frigidum ARCHAEAL Methanogenium frigidum Ace-2 Ace-2 SMCC 459W Gi00359 Genome incomplete Public Univ of New South Wales, Australian Genome Research Facility, Molecular Dynamics Cavicchioli R http://www.babs.unsw.edu.au/research/ehm/lab_cavicchioli.html Energy production, Biotechnological, Carbon cycle 313587 001801_GCAT 0 0 0 0 Australia Ace Lake in Vestfold Hills Antarctica at a depth of 24m Ace Lake in Vestfold Hills Antarctica at a depth of 24m -68.4 78.18 24 m Coccus-shaped Psychrophile Halophile 6.5 - 7.9 gram- Free living None Fresh water 15 Nonmotile Methanogen Lithotroph Archaea Euryarchaeota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanogenium Methanogenium frigidum ARCHAEAL Methanogenium frigidum Ace-2 (=SMCC459W) Ace-2 (=SMCC459W) Methanogenium frigidum Ace-2 Gi00913 Genome incomplete Public Univ of New South Wales, J. Craig Venter Institute Moore Foundation Cavicchioli R http://www.babs.unsw.edu.au/research/ehm/lab_cavicchioli.html Biotechnological, Marine Microbial Initiative (MMI), Environmental, Energy production, Carbon cycle 313587 13497 001802_GCAT 0 5000 0 0 USA Vestfold Hills in Antarctica at a depth of 24 meters Vestfold Hills in Antarctica at a depth of 24 meters -68.4 78.18 24 m Coccus-shaped Psychrophile gram- Free living None Marine Nonmotile Methanogen Lithotroph Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanimicrococcus ARCHAEAL Methanimicrococcus blatticola PAT PAT DSM 13328 Yes Gi01583 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Energy production 91560 001803_GCAT 95892 0 0 0 0 USA Hindgut of the cockroach Periplaneta americana Hindgut of the cockroach Periplaneta americana Periplaneta americana Gut Coccus-shaped Mesophile 7.2 - 7.7 gram- None Host, Hindgut 39 Methanogen Lithotroph Archaea Euryarchaeota Methanopyri Methanopyrales Methanopyraceae Methanopyrus ARCHAEAL Methanopyrus kandleri Gi00360 Genome incomplete Proprietary Univ of Illinois at Urbana-Champaign, Molecular Dynamics, Integrated Genomics Inc Molecular Dynamics Feldman RA robert.feldman@am.apbiotech.com Biotechnological, Energy production 2320 001804_GCAT 64372 0 0 0 0 USA Anaerobe Rod-shaped Nonsporulating Hyperthermophile gram- Free living None Methanogen Lithotroph Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosaetaceae Methanosaeta ARCHAEAL Methanosaeta concilii GP-6 GP-6 Gi00081 Genome incomplete Public Clemson Univ, Univ of Washington NSF Smith K http://www.clemson.edu/genbiochem/People-Faculty-SmithK.html Biotechnological, Energy production 2223 001805_GCAT 525 0 0 0 0 USA Anaerobe Nonsporulating Mesophile gram- Free living None Fresh water Nonmotile Methanogen Lithotroph Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina ARCHAEAL Methanosarcina acetivorans Gi00361 Genome incomplete Public Goettingen Genomics Laboratory Biotechnological, Carbon cycle, Energy production 2214 001807_GCAT 146413 0 0 0 0 Germany Anaerobe Coccus-shaped Nonsporulating Mesophile gram- Free living None Fresh water Nonmotile Methanogen Lithotroph Archaea Crenarchaeota Thermoprotei Desulfurococcales Desulfurococcaceae Staphylothermus Staphylothermus hellenicus ARCHAEAL Staphylothermus hellenicus P8, DSM 12710 P8, DSM 12710 Staphylothermus hellenicus DSM 12710 DSM 12710T, JCM 10830T Yes Gi02533 Genome incomplete Public DOE Joint Genome Institute DOE Anderson I IJAnderson@lbl.gov Biotechnological, Tree of Life 591019 33683 003259_GCAT 920 0 1800 0 38 USA "Shallow hydrothermal vents off Palaeochori Bay, Milos, Greece" Greece Shallow hydrothermal vents off Palaeochori Bay, Milos, Greece "3,667,475" "2,451,548" Anaerobe Coccus-shaped Nonsporulating Hyperthermophile 6 gram- Free living Clusters None Fresh water, Hydrothermal vent 85 Nonmotile Heterotroph Archaea Crenarchaeota Thermoprotei Thermoproteales Thermoproteaceae Thermoproteus Thermoproteus neutrophilus ARCHAEAL Thermoproteus neutrophilus V24Sta V24Sta Thermoproteus neutrophilus V24Sta NBRC 100436, DSM 2338, JCM 9278 Yes Gc00753 Gi01058 Genome Complete and Published Public DOE Joint Genome Institute DOE Lowe T lowe@soe.ucsc.edu Tneu 2008-03-27 Unpublished Biotechnological 444157 15645 001813_GCAT 641522657 NC_010525 Complete 1769 2094 1 0 59 USA Hot spring in Iceland Iceland Hot spring in Iceland Anaerobe Rod-shaped Nonsporulating Hyperthermophile gram- Free living None Fresh water, Hot spring 85 Nonmotile Autotroph Archaea Crenarchaeota Thermoprotei Thermoproteales Thermoproteaceae Thermoproteus ARCHAEAL Thermoproteus tenax Kra1 Kra1 DSM 2078 Yes Gi01878 Genome incomplete Public Epidauros Biotechnologie AG, Duisburg-Essen Univ DFG Biotechnological 2271 001814_GCAT 872 639255502 0 0 54 Germany Anaerobe Rod-shaped Nonsporulating Thermophile gram- Free living None Fresh water Nonmotile Heterotroph, Chemolithoautotroph Archaea Crenarchaeota Thermoprotei Desulfurococcales Pyrodictiaceae Pyrolobus ARCHAEAL Pyrolobus fumarii Pyrolobus fumarii Gi00498 Genome complete Proprietary Celera Genomics, Diversa Diversa Biotechnological 54252 13457 001816_GCAT 878 0 Complete 1850 2000 53 USA Aerobe Coccus-shaped Hyperthermophile 5.5 gram- Free living None Marine, Hydrothermal vent, Deep sea 106 Barophile Chemolithoautotroph Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus ARCHAEAL Sulfolobus metallicus Gi01091 Genome incomplete Public Univ of Copenhagen Garrett RA garrett@mermaid.molbio.ku.dk Biotechnological 47303 001817_GCAT 946 0 0 0 0 Denmark Facultative Coccus-shaped Nonsporulating Thermophile gram- Free living Singles None Fresh water Nonmotile Acidophile Lithotroph, Chemolithoautotroph Archaea Euryarchaeota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus voltae ARCHAEAL Methanococcus voltae A3 A3 Methanococcus voltae A3 ATCC BAA-1334 Gi01310 Genome incomplete Public DOE Joint Genome Institute DOE Whitman WB whitman@uga.edu MvolDRAFT Carbon cycle, Energy production, Biotechnological 456320 20131 001823_GCAT 36 641380443 NZ_ABHB00000000 Draft 1866 1766 28.6 USA Salt marsh Salt marsh Anaerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Fresh water Motile Methanogen Lithotroph Archaea Thaumarchaeota Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus maritimus ARCHAEAL Nitrosopumilus maritimus SCM1 SCM1 Nitrosopumilus maritimus SCM1 Gc00694 Gi01311 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Nmar 2007-11-15 Unpublished Biotechnological, Ecological 436308 19265 001825_GCAT 238720 641228499 NC_010085 Complete 1645 1880 1 0 34 USA Salt-water aquarium Salt-water aquarium Aerobe Rod-shaped Mesophile gram- Free living Singles None Sea water Nonmotile Ammonia-oxidizer Chemolithoautotroph, Autotroph Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus islandicus ARCHAEAL Sulfolobus islandicus M.14.25 M.14.25 Sulfolobus islandicus M.14.25 Gc00992 Gi01312 Genome Complete and Published Public DOE Joint Genome Institute DOE Whitaker R rwhitaker@life.uiuc.edu M1425 2009-04-24 Unpublished Biotechnological 427317 18871 001826_GCAT 643692045 NC_012588 Complete Level 6: Finished initial strain name: Kamchatka #1 Prodigal 2608 2900 1 0 35 USA Hot spring on the Kamchatka Penninsula in the Russian Far East Russia Hot spring on the Kamchatka Penninsula in the Russian Far East Aerobe Coccus-shaped Nonsporulating Hyperthermophile gram- Free living Singles None Hot spring 75 - 85 Nonmotile Acidophile Heterotroph Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus islandicus ARCHAEAL Sulfolobus islandicus M.16.27 M.16.27 Sulfolobus islandicus M.16.27 Gc00996 Gi01313 Genome Complete and Published Public DOE Joint Genome Institute DOE Whitaker R rwhitaker@life.uiuc.edu M1627 2009-04-29 Unpublished Biotechnological 427318 18873 001827_GCAT 643692046 NC_012632 Complete Level 6: Finished initial strain name: Kamchatka #2 Prodigal 2692 2956 1 0 35 USA Hot spring on the Kamchatka Penninsula in the Russian Far East Russia Hot spring on the Kamchatka Penninsula in the Russian Far East Aerobe Coccus-shaped Nonsporulating Hyperthermophile gram- Free living Singles None Hot spring 75 - 85 Nonmotile Acidophile Heterotroph Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus islandicus ARCHAEAL Sulfolobus islandicus M.16.4 M.16.4 Sulfolobus islandicus M.16.4 Gc01006 Gi01314 Genome Complete and Published Public DOE Joint Genome Institute DOE Whitaker R rwhitaker@life.uiuc.edu M164 2009-05-27 Unpublished Biotechnological 426118 18807 001828_GCAT 643692047 NC_012726 Complete Level 6: Finished initial strain name: Kamchatka #3 Prodigal 2586 2869 1 0 35 USA Hot spring on the Kamchatka Penninsula in the Russian Far East Russia Hot spring on the Kamchatka Penninsula in the Russian Far East Aerobe Coccus-shaped Nonsporulating Thermophile gram- Free living Singles None Fresh water 75 - 85 Nonmotile Acidophile Lithotroph Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus islandicus ARCHAEAL Sulfolobus islandicus U.3.28 U.3.28 Sulfolobus islandicus U.3.28 Gi01315 Genome Permanent Draft Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 457571 20205 001829_GCAT 0 Complete Level 1: Standard Draft initial strain name: Kamchatka #4 3000 0 34.8 USA "Hot spring on the Kamchatka Penninsula, in the Russian Far East" Russia Hot spring on the Kamchatka Penninsula, in the Russian Far East Facultative Coccus-shaped Nonsporulating Hyperthermophile gram- Free living Singles None Fresh water, Hot spring 75 - 85 Nonmotile Acidophile Lithotroph Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus islandicus ARCHAEAL Sulfolobus islandicus L.S.2.15 L.S.2.15 Sulfolobus islandicus L.S.2.15 Gc00989 Gi04297 Genome Complete and Published Public DOE Joint Genome Institute DOE Whitaker R rwhitaker@life.uiuc.edu LS215 2009-04-24 Unpublished Biotechnological 429572 18987 001830_GCAT 643692044 NC_012589 Complete Level 6: Finished initial strain name: Lassen #1 2736 3069 1 0 35 USA Lassen National Park in California USA Lassen National Park in California "4,049,703" "-12,142,752" Aerobe Coccus-shaped Nonsporulating Hyperthermophile gram- Free living Singles None Hot spring 75 - 85 Nonmotile Acidophile Heterotroph Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus islandicus ARCHAEAL Sulfolobus islandicus L.D.8.5 L.D.8.5 Sulfolobus islandicus L.D.8.5 Gi01317 Genome Permanent Draft Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 425944 18803 001831_GCAT 0 Complete Level 1: Standard Draft initial strain name: Lassen #2 3000 0 35.2 USA Lassen National Park in California USA Lassen National Park in California 41.072312 -121.493225 Aerobe Coccus-shaped Nonsporulating Hyperthermophile gram- Free living Singles None Fresh water 75 - 85 Nonmotile Acidophile Lithotroph Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus islandicus ARCHAEAL Sulfolobus islandicus Y.G.57.14 Y.G.57.14 Sulfolobus islandicus Y.G.57.14 Gc00997 Gi01318 Genome Complete and Published Public DOE Joint Genome Institute DOE Whitaker R rwhitaker@life.uiuc.edu 2009-04-29 Unpublished Biotechnological 439386 19487 001832_GCAT 643692048 NC_012622 Complete Level 6: Finished initial strain name: Yellowstone #1 Prodigal 2702 3078 1 0 35.4 USA Hot spring in Yellowstone National Park USA Hot spring in Yellowstone National Park 44.618406 -110.102511 Facultative Coccus-shaped Nonsporulating Hyperthermophile gram- Free living Singles None Hot spring 75 - 80 Nonmotile Acidophile Heterotroph Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus islandicus ARCHAEAL Sulfolobus islandicus Y.N.15.51 Y.N.15.51 Sulfolobus islandicus Y.N.15.51 Gc00995 Gi01319 Genome Complete and Published Public DOE Joint Genome Institute DOE Whitaker R rwhitaker@life.uiuc.edu YN1551 2009-04-29 Unpublished Biotechnological 419942 18651 001833_GCAT 643692049 NC_012623 Complete Level 6: Finished initial strain name: Yellowstone #2 Prodigal 2812 3267 1 1 35.3 USA Hot spring at Yellowstone National Park USA Hot spring at Yellowstone National Park Facultative Coccus-shaped Nonsporulating Hyperthermophile gram- Free living Singles None Hot spring 75 - 85 Nonmotile Acidophile Heterotroph Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus ARCHAEAL Sulfolobus islandicus HVE10/4 HVE10/4 Gi01320 Genome incomplete Public Univ of Copenhagen European Union Garrett RA garrett@mermaid.molbio.ku.dk Biotechnological 43080 001834_GCAT 92457 0 3000 0 0 Denmark Facultative Coccus-shaped Nonsporulating Hyperthermophile gram- Free living Singles None Fresh water Nonmotile Acidophile Lithotroph Bacteria Proteobacteria Gammaproteobacteria Endoriftia Endoriftia persephone BACTERIAL Endoriftia persephone Hot96_1+Hot96_2 Hot96_1+Hot96_2 Riftia pachyptila endosymbiont Endoriftia persephone 'Hot96_1+Hot96_2' Gi02263 Gm00016 Metagenome incomplete Public Scripps Institute of Oceanography, SymBio Corporation, Quorex Inc Molecular Dynamics Feldman RA robert.feldman@am.apbiotech.com Epers 394104 16744 001835_GCAT 641736192 NZ_AASF00000000 Draft 11x 3203 6486 57.9 USA collected between 9deg N and 13deg N of the East Pacific Rise (EPR) hydrothermal vent system during the HOT-96 cruise collected between 9deg N and 13deg N of the East Pacific Rise (EPR) hydrothermal vent system during the HOT-96 cruise Mesophile gram- Symbiotic Riftia pachyptila Sulfur oxidizer Eukaryota Acanthamoeba EUKARYAL Acanthamoeba castellanii Acanthamoeba castellanii Ge00082 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Medical 5755 12783 001836_GCAT 0 13784 0 0 Canada Keratitis, Encephalitis Fresh water, Soil Opportunistic Pathogen Eukaryota Acanthamoeba EUKARYAL Acanthamoeba castellanii Neff Neff Acanthamoeba castellanii Neff Gi00975 Genome incomplete Public BCM-HGSC NIH-NHGRI Highlander, SK sarahh@bcm.tmc.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Medical 5755 20303 001837_GCAT 0 13.75x 45000 0 0 454 USA Keratitis, Encephalitis Soil, Fresh water Opportunistic Pathogen Eukaryota Streptophyta Coniferopsida Coniferales Cupressaceae Sequoia EUKARYAL Sequoia sempervirens Gi02281 Genome-Regions incomplete Public Univ of California, Davis Neale DB http://dendrome.ucdavis.edu/NealeLab/overview.html Agricultural 28980 003001_GCAT 0 0 0 0 USA Eukaryota Streptophyta Coniferopsida Coniferales Pinaceae Pseudotsuga EUKARYAL Pseudotsuga menziesii Douglas-fir Gi02282 Genome-Regions incomplete Public Univ of California, Davis Neale DB http://dendrome.ucdavis.edu/NealeLab/overview.html Agricultural 3357 003002_GCAT 0 0 0 0 USA Eukaryota Acanthamoeba EUKARYAL Acanthamoeba castellanii Gi02268 Genome incomplete Public J. Craig Venter Institute JCVI http://www.jcvi.org/cms/contact/locations/ Medical 5755 002985_GCAT 0 0 0 0 Sanger USA Keratitis, Encephalitis Soil, Fresh water Opportunistic Pathogen Eukaryota Dinophyceae Gonyaulacales Gonyaulacaceae Alexandrium Alexandrium tamarense EUKARYAL Alexandrium tamarense CCMP1598 CCMP1598 Alexandrium tamarense Ge00001 EST incomplete Public Univ of Iowa NSF Bhattacharya D dbhattac@blue.weeg.uiowa.edu 2926 9505 001838_GCAT 0 0 0 0 USA Photosynthetic Eukaryota Dinophyceae Gymnodiniales Gymnodiniaceae Karlodinium EUKARYAL Karlodinium micrum Ge00224 EST incomplete Public Univ of Connecticut NSF Lin S senjie.lin@uconn.edu 342587 001839_GCAT 0 0 0 0 USA Eukaryota Dinophyceae Gymnodiniales Gymnodiniaceae Amphidinium Amphidinium carterae EUKARYAL Amphidinium carterae Ge00225 EST incomplete Public Univ of Connecticut NSF Lin S senjie.lin@uconn.edu 2961 001840_GCAT 0 0 0 0 USA Eukaryota Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces macrogynus EUKARYAL Allomyces macrogynus Ge00002 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 28583 001841_GCAT 0 0 0 0 Canada Eukaryota Dinophyceae Gymnodiniales Gymnodiniaceae Amphidinium Amphidinium operculatum EUKARYAL Amphidinium operculatum Amphidinium operculatum Ge00003 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 107036 12781 001842_GCAT 0 0 0 0 Canada Eukaryota Apicomplexa Aconoidasida Babesiidae Babesia Babesia bovis EUKARYAL Babesia bovis C61411 C61411 Ge00004 EST incomplete Public Utrecht Univ, Sanger Institute WOTRO, NWO Berriman M mb4@sanger.ac.uk 5865 001843_GCAT 0 0 0 0 United Kingdom Eukaryota Apicomplexa Aconoidasida Babesiidae Babesia Babesia bigemina EUKARYAL Babesia bigemina Gi01373 Genome incomplete Public Sanger Institute Wellcome Trust Berriman M mb4@sanger.ac.uk Medical, Animal Pathogen 5866 001844_GCAT 0 Complete 8x 10000 0 4 0 0 Sanger United Kingdom virulent Australian isolate virulent Australian isolate Hemoglobinuria, Anemia Parasite Eukaryota Apicomplexa Aconoidasida Babesiidae Babesia Babesia bovis EUKARYAL Babesia bovis Texas Texas Gi00718 Genome incomplete Public Washington State Univ USDA 5865 001845_GCAT 0 0 0 0 USA Eukaryota Apicomplexa Aconoidasida Babesiidae Babesia Babesia microti EUKARYAL Babesia microti Gi02342 Genome incomplete Public Genoscope Wincker P pwincker@genoscope.cns.fr Medical, Human Pathogen 5868 003064_GCAT 0 12x 5200 0 3 0 0 Sanger USA Babesiosis Host Rodent Parasite, Pathogen Eukaryota Blastocystis Blastocystis hominis EUKARYAL Blastocystis hominis Blastocystis hominis Ge00005 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 12968 12785 001846_GCAT 0 12761 0 0 Canada Eukaryota Blastocystis Blastocystis hominis EUKARYAL Blastocystis hominis Gi01236 Genome incomplete Public Genoscope Wincker P pwincker@genoscope.cns.fr 12968 001847_GCAT 0 10000 0 0 France Eukaryota Carpediemonas Carpediemonas membranifera EUKARYAL Carpediemonas membranifera Ge00006 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 201153 001848_GCAT 0 0 0 0 Canada Eukaryota Cercomonadida Cercomonadidae Cercomonas Cercomonas sp. ATCC 50319 EUKARYAL Cercomonas sp. ATCC 50319 ATCC 50319 Cercomonas ATCC50319 ATCC 50319 Ge00280 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 45113 12789 001849_GCAT 0 0 0 0 Canada Eukaryota Dinophyceae Gymnodiniales Gymnodiniaceae Karenia EUKARYAL Karenia brevis Karenia brevis Ge00007 EST incomplete Public Univ of Iowa, NOAA, DOE Joint Genome Institute DOE 156230 12967 001850_GCAT 0 0 0 0 USA Eukaryota Apicomplexa Coccidia Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium parvum EUKARYAL Cryptosporidium parvum H- or genotype 1 isolate H- or genotype 1 isolate Gi00181 Genome incomplete Public Virginia Commonwealth Univ NIH-NIAID Buck GA http://www.vcu.edu/lifesci/education/buck.html Human Pathogen, Animal Pathogen, Medical 5807 001851_GCAT 0 0 0 8 0 0 USA Diarrhea Parasite, Pathogen, Intracellular Eukaryota Apicomplexa Coccidia Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium muris EUKARYAL Cryptosporidium muris RN66 RN66 Cryptosporidium muris RN66 Gi02331 Genome incomplete Public J. Craig Venter Institute Animal Pathogen, Human Pathogen, Medical 441375 19553 003053_GCAT 0 AAZY00000000 Draft 0 0 0 USA Diarrhea Pathogen, Parasite, Intracellular Eukaryota Apicomplexa Coccidia Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium parvum EUKARYAL Cryptosporidium parvum Iowa Iowa Gi00183 Genome incomplete Public Stanford Univ, Virginia Commonwealth Univ, Univ of Minnesota NIH-NIAID Nelson RG malaria@itsa.ucsf.edu Animal Pathogen, Human Pathogen, Medical 414452 001852_GCAT 0 0 0 8 0 USA Diarrhea Pathogen, Parasite, Intracellular Eukaryota Apicomplexa Coccidia Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium parvum EUKARYAL Cryptosporidium parvum Iowa Iowa Cryptosporidium parvum Iowa Gi00182 Genome incomplete Public MWG-Biotech, MRC Cambridge, UK Animal Pathogen, Human Pathogen, Medical 414452 13873 001853_GCAT 0 0 0 6 0 0 United Kingdom Diarrhea Pathogen, Parasite, Intracellular Eukaryota Apicomplexa Coccidia Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium parvum EUKARYAL Cryptosporidium parvum Ge00008 EST incomplete Public UCSF TIGR tgi@tigr.org Animal Pathogen, Human Pathogen, Medical 5807 001854_GCAT 0 0 0 6 0 0 USA Diarrhea Pathogen, Parasite, Intracellular Eukaryota Glaucocystophyceae Cyanophoraceae Cyanophora Cyanophora paradoxa EUKARYAL Cyanophora paradoxa Cyanophora paradoxa Ge00009 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 2762 12793 001855_GCAT 0 27955 0 0 Canada Photosynthetic Eukaryota Glaucocystophyceae Cyanophoraceae Cyanophora Cyanophora paradoxa EUKARYAL Cyanophora paradoxa Gi01763 Genome incomplete Public Univ of Iowa, SymBio Corporation NSF Bhattacharya D debashi-bhattacharya@uiowa.edu 2762 001856_GCAT 0 0 0 0 USA Photosynthetic Eukaryota Dinophyceae Suessiales Symbiodiniaceae Symbiodinium Symbiodinium sp. KB8 EUKARYAL Symbiodinium sp. Ge00219 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 230985 001857_GCAT 0 32000 0 0 USA None Eukaryota Dinophyceae Suessiales Symbiodiniaceae Symbiodinium Symbiodinium sp. EUKARYAL Symbiodinium sp. Gi01477 Genome incomplete Public Washington Univ Clifton S sclifton@watson.wustl.edu 2950 001858_GCAT 0 0 0 0 USA Reef-building corals Eukaryota Apicomplexa Coccidia Eucoccidiorida Eimeriidae Eimeria Eimeria tenella EUKARYAL Eimeria tenella Houghton Houghton Eimeria tenella str. Houghton Ge00010 EST incomplete Public Washington Univ EST project est@watson.wustl.edu 413949 143 001859_GCAT 0 34143 0 0 USA Eukaryota Apicomplexa Coccidia Eucoccidiorida Eimeriidae Eimeria Eimeria tenella EUKARYAL Eimeria tenella Ge00271 EST incomplete Public Univ of Sao Paulo Gruber A argruber@usp.br 5802 002883_GCAT 0 12354 0 0 Brazil Eukaryota Apicomplexa Coccidia Eucoccidiorida Eimeriidae Eimeria Eimeria maxima EUKARYAL Eimeria maxima Ge00272 EST incomplete Public Univ of Sao Paulo Gruber A argruber@usp.br 5804 002884_GCAT 0 15637 0 0 Brazil Eukaryota Apicomplexa Coccidia Eucoccidiorida Eimeriidae Eimeria Eimeria acervulina EUKARYAL Eimeria acervulina Ge00273 EST incomplete Public Univ of Sao Paulo Gruber A argruber@usp.br 5801 002885_GCAT 0 11696 0 0 Brazil Eukaryota Apicomplexa Coccidia Eucoccidiorida Eimeriidae Eimeria Eimeria tenella EUKARYAL Eimeria tenella Houghton Houghton Eimeria tenella str. Houghton Gi00218 Genome incomplete Public Sanger Institute, Institute of Animal Health BBSRC Shirley M shirley@bbsrc.ac.uk Medical 413949 364 001860_GCAT 0 8x 60000 0 14 53 Sanger United Kingdom Coccidiosis Pathogen Eukaryota Apicomplexa Coccidia Eucoccidiorida Eimeriidae Eimeria Eimeria maxima EUKARYAL Eimeria maxima Gi02186 Genome-Regions incomplete Public Sanger Institute, Institute of Animal Health BBSRC Medical 5804 002886_GCAT 0 0 0 53 United Kingdom Coccidiosis Pathogen Eukaryota Kinetoplastida Trypanosomatidae Crithidia Crithidia deanei EUKARYAL Crithidia deanei ATCC 30255 ATCC 30255 ATCC 30255 Gi02532 Genome incomplete Public Sanger Institute 59799 003258_GCAT 0 4x 0 0 0 United Kingdom Zelus leucogrammus Zelus leucogrammus Host Parasite, Insect Parasite Eukaryota Entamoeba Entamoeba dispar EUKARYAL Entamoeba dispar Entamoeba dispar Gi00220 Genome complete Public Sanger Institute, LSHTM Wellcome Trust Berriman M mb4@sanger.ac.uk 46681 12916 001861_GCAT 0 200000 0 0 Sanger United Kingdom Eukaryota Entamoeba Entamoeba dispar EUKARYAL Entamoeba dispar SAW760 SAW760 Entamoeba dispar SAW760 Gi01940 Genome incomplete Public J. Craig Venter Institute NIH TIGR enta@tigr.org 370354 12914 002564_GCAT 0 AANV02000000 Draft 2x 0 0 0 Sanger USA Eukaryota Entamoeba Entamoeba invadens EUKARYAL Entamoeba invadens IP-1 IP-1 Entamoeba invadens IP1 Gi00222 Genome-Survey complete Public Sanger Institute, J. Craig Venter Institute, LSHTM Wellcome Trust Berriman M mb4@sanger.ac.uk Human Pathogen, Medical 370355 12926 001862_GCAT 0 AANW02000000 Draft 2.8x 0 0 0 Sanger United Kingdom Green Water Snake Green Water Snake Natrix cyclopion Pathogen Eukaryota Entamoeba Entamoeba moshkovskii EUKARYAL Entamoeba moshkovskii FIC FIC Entamoeba moshkovskii Gi00223 Genome-Survey incomplete Public Sanger Institute, LSHTM Wellcome Trust Berriman M mb4@sanger.ac.uk 41668 12921 001863_GCAT 0 10000 0 0 Sanger United Kingdom Sewage in Canada Sewage in Canada Eukaryota Entamoeba Entamoeba terrapinae EUKARYAL Entamoeba terrapinae M M Entamoeba terrapinae Gi00224 Genome-Survey complete Public Sanger Institute, LSHTM Wellcome Trust Berriman M mb4@sanger.ac.uk 110771 12918 001864_GCAT 0 30000 0 0 Sanger United Kingdom Painted Turtle Painted Turtle Chrysemys picta Eukaryota Euglenida Euglenales Euglena EUKARYAL Euglena gracilis Euglena gracilis Ge00011 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 3039 12796 001865_GCAT 0 0 0 0 Canada Eukaryota Cryptophyta Goniomonadaceae Goniomonas Goniomonas sp. ATCC 50108 EUKARYAL Goniomonas sp. ATCC 50108 ATCC 50108 Goniomonas sp. ATCC 50108 ATCC 50108 Ge00012 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 234597 12798 001867_GCAT 0 0 0 0 Canada Eukaryota Bigelowiella EUKARYAL Bigelowiella natans CCMP2755 CCMP2755 Gi01573 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 227086 001868_GCAT 0 0 0 0 USA None Eukaryota Cryptophyta Cryptomonadaceae Guillardia Guillardia theta EUKARYAL Guillardia theta Gi01572 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 55529 001869_GCAT 0 0 0 0 USA None Eukaryota Cryptophyta Cryptomonadaceae Guillardia Guillardia theta EUKARYAL Guillardia theta Guillardia theta Ge00013 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 55529 9566 001870_GCAT 0 14652 0 0 Canada Eukaryota Hartmannellidae Hartmannella Hartmannella vermiformis EUKARYAL Hartmannella vermiformis Hartmannella vermiformis Ge00014 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 5778 12801 001871_GCAT 0 9553 0 0 Canada Eukaryota Dinophyceae Peridiniales Heterocapsaceae Heterocapsa Heterocapsa triquetra EUKARYAL Heterocapsa triquetra Heterocapsa triquetra Ge00016 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 66468 12802 001873_GCAT 0 0 0 0 Canada Eukaryota Oligohymenophorea Hymenostomatida Ichthyophthirius Ichthyophthirius multifiliis EUKARYAL Ichthyophthirius multifiliis G5 G5 Ge00017 EST incomplete Public Cornell Univ NSF Clark T tgc3@cornell.edu 5932 001874_GCAT 0 0 0 0 USA Eukaryota Oligohymenophorea Hymenostomatida Ichthyophthirius Ichthyophthirius multifiliis EUKARYAL Ichthyophthirius multifiliis NY1 NY1 Ge00018 EST incomplete Public Cornell Univ NSF Clark T tgc3@cornell.edu 5932 001875_GCAT 0 0 0 0 USA Eukaryota Isochrysidales Isochrysidaceae Isochrysis Isochrysis galbana EUKARYAL Isochrysis galbana CCMP 1323 CCMP 1323 Ge00019 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 37099 001876_GCAT 0 0 0 0 Canada Eukaryota Jakobidae Jakoba Jakoba bahamiensis EUKARYAL Jakoba bahamiensis Jakoba bahamiensis Ge00020 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 221721 12806 001877_GCAT 0 0 0 0 Canada Eukaryota Jakobidae Jakoba EUKARYAL Jakoba libera Jakoba libera Ge00021 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 143017 12804 001878_GCAT 0 0 0 0 Canada Eukaryota Kinetoplastida Trypanosomatidae Leishmania EUKARYAL Leishmania chagasi Ge00022 EST incomplete Public ProGeNe CNPq, MCT, BNB Andrade P bandolim@hotlink.com.br 44271 001879_GCAT 0 35000 8500 0 Brazil Eukaryota Kinetoplastida Trypanosomatidae Leishmania Leishmania braziliensis EUKARYAL Leishmania braziliensis MHOM/BR/75M2904 MHOM/BR/75M2904 Leishmania braziliensis MHOM/BR/75/M2904 Gi00914 Genome incomplete Public Sanger Institute, Imperial College Wellcome Trust Berriman M mb4@sanger.ac.uk Human Pathogen, Medical 420245 18663 001880_GCAT 0 6x 33500 0 35 0 0 Sanger United Kingdom Leishmaniasis Host Pathogen Eukaryota Kinetoplastida Trypanosomatidae Leishmania EUKARYAL Leishmania mexicana MHOM/GT/2001/U1103 MHOM/GT/2001/U1103 Gi02187 Genome incomplete Public Sanger Institute, Univ of York, Univ of Glasgow Wellcome Trust Berriman M mb4@sanger.ac.uk Human Pathogen, Medical 5665 002887_GCAT 0 5x 33500 0 0 Sanger United Kingdom 30 year old male patient with a single ear lesion 30 year old male patient with a single ear lesion Leishmaniasis Host Pathogen Eukaryota Apicomplexa Coccidia Eucoccidiorida Sarcocystidae Neospora Neospora caninum EUKARYAL Neospora caninum Gi02188 Genome incomplete Public Sanger Institute, Univ of Liverpool BBSRC Berriman M mb4@sanger.ac.uk 29176 002888_GCAT 0 33500 0 0 Sanger United Kingdom Eukaryota Lotharella EUKARYAL Lotharella amoeboformis Lotharella amoeboformis Ge00023 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 168855 12808 001887_GCAT 0 0 0 0 Canada Eukaryota Malawimonadidae Malawimonas Malawimonas californiana EUKARYAL Malawimonas californiana Malawimonas californiana Ge00024 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 221722 12810 001888_GCAT 0 0 0 0 Canada Eukaryota Malawimonadidae Malawimonas Malawimonas jakobiformis EUKARYAL Malawimonas jakobiformis Malawimonas jakobiformis Ge00025 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 136089 12814 001889_GCAT 0 0 0 0 Canada Eukaryota Mastigamoebidae Mastigamoeba EUKARYAL Mastigamoeba balamuthi Mastigamoeba balamuthi Ge00026 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 108607 12697 001890_GCAT 0 0 0 0 Canada Eukaryota Streptophyta Mesostigmatophyceae Mesostigmatales Mesostigmataceae Mesostigma Mesostigma viride EUKARYAL Mesostigma viride Ge00027 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 41882 001891_GCAT 0 0 0 0 Canada Eukaryota Chytridiomycota Monoblepharidomycetes Monoblepharidales Monoblepharidaceae Monoblepharella EUKARYAL Monoblepharella Ge00028 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 79274 001892_GCAT 0 0 0 0 Canada Eukaryota Heterolobosea Schizopyrenida Vahlkampfiidae Naegleria Naegleria gruberi EUKARYAL Naegleria gruberi Naegleria gruberi Ge00029 EST incomplete Public Dalhousie Univ 5762 12693 001893_GCAT 0 5000 0 0 Canada Eukaryota Heterolobosea Schizopyrenida Vahlkampfiidae Naegleria Naegleria gruberi EUKARYAL Naegleria gruberi NEG-M NEG-M Naegleria gruberi Gi00797 Genome incomplete Public DOE Joint Genome Institute, Univ of California, Berkeley DOE Cande Z http://mcb.berkeley.edu/labs/cande/ 5762 14010 001894_GCAT 0 8.63x 0 0 0 Sanger USA Fresh water, Soil Eukaryota Apicomplexa Coccidia Eucoccidiorida Sarcocystidae Neospora Neospora caninum EUKARYAL Neospora caninum Neospora caninum Ge00030 EST incomplete Public Washington Univ, J. Craig Venter Institute NRI Animal Pathogen, Medical 29176 12652 001895_GCAT 0 0 0 0 USA Neosporosis Pathogen, Parasite, Obligate intracellular Eukaryota Chlorophyta Prasinophyceae Pseudoscourfieldiales Pycnococcaceae Nephroselmis EUKARYAL Nephroselmis olivacea Ge00031 EST incomplete Public Montreal Univ Genome-Quebec, Genome Canada Gray MW mwgray@is.dal.ca 31312 001896_GCAT 0 0 0 0 Canada Bean-shaped Fresh water, Fresh water Motile Eukaryota Microsporidia Nosematidae Brachiola EUKARYAL Nosema (Brachiola) algerae Gi00976 Genome incomplete Public Genoscope 33691 001897_GCAT 0 0 0 0 France Eukaryota Microsporidia Antonospora EUKARYAL Nosema (Antonospora) locustae Antonospora locustae Gi00412 Genome incomplete Public Marine Biological Laboratory NSF Morrison HG morrison@mbl.edu 278021 12903 001898_GCAT 0 3x 2900 0 0 Sanger USA Parasite, Intracellular Eukaryota Microsporidia Antonospora EUKARYAL Nosema locustae. Ge00032 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 278021 001899_GCAT 0 2384 0 0 Canada Eukaryota Nucleariidae Nuclearia EUKARYAL Nuclearia sp. Ge00033 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 154967 001900_GCAT 0 0 0 0 Canada Eukaryota Synurophyceae Ochromonadales Ochromonadaceae Ochromonas Ochromonas danica EUKARYAL Ochromonas danica Ochromonas danica Ge00034 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 2986 12714 001901_GCAT 0 0 0 0 Canada Eukaryota Platyhelminthes Turbellaria Acoela EUKARYAL Isodiametra pulchra Gi01478 Genome incomplete Public Washington Univ NIH-NHGRI Clifton S sclifton@watson.wustl.edu 31265 001902_GCAT 0 0 0 0 USA Eukaryota Spirotrichea Stichotrichida Oxytrichidae Sterkiella EUKARYAL Oxytricha (Sterkiella) trifallax (histriomuscorum) Sterkiella histriomuscorum Gi00751 Genome incomplete Public Washington Univ NIH-NHGRI Mardis E http://genome.wustl.edu/Bio/email_data.cgi?staff=Elaine%20Mardis 94289 12857 001903_GCAT 0 4x 0 0 0 Sanger USA Eukaryota Pavlovales Pavlovaceae Pavlova EUKARYAL Pavlova lutheri Pavlova lutheri Ge00035 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 2832 12699 001905_GCAT 0 0 0 0 Canada Eukaryota Perkinsida Perkinsidae Perkinsus Perkinsus marinus EUKARYAL Perkinsus marinus PmCV4CB5 2B3 D4 PmCV4CB5 2B3 D4 Perkinsus marinus PmCV4CB5 2B3 D4 ATCC 50983 Gi00442 Genome incomplete Public COMB, J. Craig Venter Institute NSF Gardner MJ gardner@tigr.org Molluscs Pathogen 423536 12737 001906_GCAT 0 AAXJ01000000 Draft 28000 0 0 USA Dermo Host Pathogen, Parasite Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium Plasmodium berghei EUKARYAL Plasmodium berghei ANKA ANKA Plasmodium berghei str. ANKA Gi00463 Genome incomplete Public Sanger Institute, Univ of Oxford Wellcome Trust Berriman M mb4@sanger.ac.uk Animal Pathogen, Medical 5823 146 001908_GCAT 643280126 CAAI01000000 Draft 8x 26000 0 14 0 0 Sanger United Kingdom Asynchronous bloodstages of clone 15cy1 of the ANKA strain of P. berghei Asynchronous bloodstages of clone 15cy1 of the ANKA strain of P. berghei Malaria Host Pathogen, Parasite Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium Plasmodium chabaudi EUKARYAL Plasmodium chabaudi AS AS Plasmodium chabaudi chabaudi Gi00464 Genome incomplete Public Sanger Institute, Univ of Glasgow Wellcome Trust Berriman M mb4@sanger.ac.uk Animal Pathogen, Medical, Rodent Pathogen 31271 147 001909_GCAT 643280127 NCBI, CAAJ01000000 Draft 8x 30000 0 14 0 0 Sanger United Kingdom Malaria Host Pathogen, Parasite Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium EUKARYAL Plasmodium falciparum Ghanaian clinical isolate Ghanaian clinical isolate Gi00915 Genome incomplete Public Sanger Institute, Univ of London, Univ of Oxford Wellcome Trust Berriman M mb4@sanger.ac.uk Human Pathogen, Medical 5833 001910_GCAT 0 8x 25000 0 14 0 0 Sanger United Kingdom Malaria Host Pathogen, Parasite Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium EUKARYAL Plasmodium falciparum IT IT Gi00916 Genome incomplete Public Sanger Institute, BiomalPar, Univ of Oxford European Union Berriman M mb4@sanger.ac.uk Human Pathogen, Medical 5833 001911_GCAT 0 1x 23000 0 14 0 0 Sanger United Kingdom Malaria Host Pathogen, Parasite Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium Plasmodium falciparum EUKARYAL Plasmodium falciparum Dd2 Dd2 Plasmodium falciparum Dd2 Gi00465 Genome incomplete Public Broad Institute, SBRI NIH-NIAID Birren B bwb@broad.mit.edu Human Pathogen, Medical 57267 17829 001912_GCAT 0 AASM01000000 Draft 0 0 14 0 0 Sanger USA Malaria Host Pathogen Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium Plasmodium falciparum EUKARYAL Plasmodium falciparum HB3 HB3 Plasmodium falciparum HB3 Gi01212 Genome incomplete Public Broad Institute NIH-NIAID Wirth DF dfwirth@hsph.harvard.edu Human Pathogen, Medical 137071 16340 001913_GCAT 0 AANS01000000 Draft 23000 0 14 0 0 Sanger USA Malaria Host Pathogen, Parasite Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium EUKARYAL Plasmodium falciparum IGH-CR14 IGH-CR14 Gi02493 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Human Pathogen, Medical 5833 003219_GCAT 0 0 0 14 0 0 Sanger USA Malaria Host Pathogen, Parasite Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium EUKARYAL Plasmodium falciparum JDP8 JDP8 Gi02494 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Human Pathogen, Medical 5833 003220_GCAT 0 0 0 14 0 0 Sanger USA Malaria Host Pathogen, Parasite Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium Plasmodium falciparum EUKARYAL Plasmodium falciparum RAJ116 RAJ116 Gi02495 Genome incomplete Public Broad Institute NIH-NIAID Broad msc@broad.mit.edu Human Pathogen, Medical 580058 33065 003221_GCAT 0 ACBR00000000 Draft 8.52x 0 0 14 0 0 Sanger USA Malaria Host Pathogen, Parasite Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium EUKARYAL Plasmodium falciparum 87_239 87_239 Gi02889 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Human Pathogen, Medical 5833 003617_GCAT 0 0 0 14 0 0 Sanger USA Malaria Host Pathogen, Parasite Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium Plasmodium gallinaceum EUKARYAL Plasmodium gallinaceum Plasmodium gallinaceum Gi00466 Genome incomplete Public Sanger Institute, Univ of Glasgow Wellcome Trust Berriman M mb4@sanger.ac.uk Animal Pathogen, Avian Pathogen, Medical 5849 12649 001914_GCAT 0 3x 25000 0 14 0 0 Sanger United Kingdom Malaria Host Pathogen, Parasite Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium Plasmodium knowlesi EUKARYAL Plasmodium knowlesi H H Plasmodium knowlesi Gi00467 Genome incomplete Public Sanger Institute, Univ of Glasgow Wellcome Trust Berriman M mb4@sanger.ac.uk Animal Pathogen, Medical, Nonhuman-Primates Pathogen 5851 149 001915_GCAT 0 Complete 8x 25000 0 14 0 0 Sanger United Kingdom Malaria Host Pathogen, Parasite Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium EUKARYAL Plasmodium reichenowi Dennis Dennis Plasmodium reichenowi Gi00468 Genome incomplete Public Sanger Institute, Univ of Glasgow Wellcome Trust Berriman M mb4@sanger.ac.uk Animal Pathogen, Chimpanzee Pathogen, Medical 5854 12645 001916_GCAT 0 26000 0 14 0 0 United Kingdom Malaria Host Pathogen, Parasite Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium EUKARYAL Plasmodium reichenowi CDC1 CDC1 Gi02492 Genome incomplete Public Broad Institute NIH-NIAID Animal Pathogen, Medical, Fungal Genome Initiative (FGI), Chimpanzee Pathogen 5854 003218_GCAT 0 0 0 14 0 0 USA Malaria Host Pathogen, Parasite Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium EUKARYAL Plasmodium vivax Plasmodium vivax Gi00469 Genome-Regions complete Public Sanger Institute Wellcome Trust Berriman M mb4@sanger.ac.uk Human Pathogen, Medical 5855 9540 001917_GCAT 0 30000 0 14 0 0 United Kingdom Malaria Host Pathogen, Parasite Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium Plasmodium vivax EUKARYAL Plasmodium vivax Salvador I Salvador I Plasmodium vivax SaI-1 Gi00470 Genome incomplete Public NMRC, J. Craig Venter Institute DOD Human Pathogen, Medical 126793 150 001918_GCAT 643280128 AAKM01000000 Draft 10x 30000 0 14 0 0 Sanger USA naturally-infected honey bee colony at Weslaco, Texas USA naturally-infected honey bee colony at Weslaco, Texas 26.159548 -97.990677 Malaria Host Pathogen, Parasite Eukaryota Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii EUKARYAL Prototheca wickerhamii Ge00036 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 3111 001919_GCAT 0 0 0 0 Canada Eukaryota Histionidae Reclinomonas Reclinomonas americana EUKARYAL Reclinomonas americana Reclinomonas americana Ge00037 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 48483 12702 001920_GCAT 0 0 0 0 Canada Eukaryota Retortamonadidae Retortamonas Retortamonas sp. EUKARYAL Retortamonas sp. Ge00038 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 194531 001921_GCAT 0 0 0 0 Canada Eukaryota Mucorales Mucoraceae Rhizopus EUKARYAL Rhizopus stolonifer Ge00039 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 4846 001922_GCAT 0 0 0 0 Canada Eukaryota Apicomplexa Coccidia Eucoccidiorida Sarcocystidae Sarcocystis Sarcocystis neurona EUKARYAL Sarcocystis neurona Sarcocystis neurona Ge00040 EST incomplete Public Washington Univ EST project est@watson.wustl.edu 42890 12629 001923_GCAT 0 0 0 0 USA Eukaryota Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus obliquus EUKARYAL Scenedesmus obliquus Ge00041 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 3088 001924_GCAT 0 0 0 0 Canada Eukaryota Seculamonas Seculamonas ecuadoriensis EUKARYAL Seculamonas ecuadoriensis Seculamonas ecuadoriensis Ge00042 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 221724 12746 001925_GCAT 0 0 0 0 Canada Eukaryota Hexamitidae Spironucleus EUKARYAL Spironucleus barkhanus Spironucleus barkhanus Ge00043 EST incomplete Public Dalhousie Univ 103874 12691 001926_GCAT 0 0 0 0 Canada Eukaryota Hexamitidae Spironucleus Spironucleus vortens EUKARYAL Spironucleus vortens Spironucleus vortens Gi00766 Genome incomplete Public DOE Joint Genome Institute, Univ of California, Berkeley DOE Cande Z http://mcb.berkeley.edu/labs/cande/ Medical, Fish Pathogen 58336 12928 001927_GCAT 0 0 0 0 USA Hole-in-the-head disease Parasite, Fish parasite Eukaryota Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus EUKARYAL Spizellomyces punctatus Ge00044 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 109760 001928_GCAT 0 0 0 0 Canada Eukaryota Heterolobosea Schizopyrenida Gruberellidae Stachyamoeba EUKARYAL Stachyamoeba lipophora Ge00045 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 63594 001929_GCAT 0 0 0 0 Canada Eukaryota Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena sp. EUKARYAL Tetrahymena sp. Gi00647 Genome incomplete Public UCSB NIH-NHGRI Orias E http://www.lifesci.ucsb.edu/mcdb/emeriti/orias/ Biotechnological, Protein production 31278 001930_GCAT 0 220000 0 5 0 0 USA None Fresh water Eukaryota Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila EUKARYAL Tetrahymena thermophila Tetrahymena thermophila Ge00046 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca Protein production, Biotechnological 5911 16078 001931_GCAT 0 56000 0 0 Canada None Fresh water Eukaryota Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila EUKARYAL Tetrahymena thermophila. Tetrahymena thermophila Ge00047 EST incomplete Public Univ of Chicago Turkewitz A apturkew@midway.uchicago.edu Protein production, Biotechnological 5911 12563 001932_GCAT 0 0 0 5 0 0 USA None Fresh water Eukaryota Apicomplexa Aconoidasida Theileriidae Theileria Theileria annulata EUKARYAL Theileria annulata Theileria annulata strain Ankara Ge00048 EST complete Public Utrecht Univ WOTRO, NWO Berriman M mb4@sanger.ac.uk Medical, Animal Pathogen 5874 14001 001933_GCAT 0 10000 0 4 0 0 International Tropical theileriosis Host Pathogen, Parasite, Intracellular Eukaryota Apicomplexa Coccidia Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii EUKARYAL Toxoplasma gondii Ge00049 EST incomplete Public Washington Univ WUSTL est@watson.wustl.edu 5811 001934_GCAT 0 0 0 0 USA Eukaryota Apicomplexa Coccidia Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii EUKARYAL Toxoplasma gondii GT1 GT1 Toxoplasma gondii GT1 Gi00662 Genome incomplete Public J. Craig Venter Institute, Univ of Pennsylvania NIH-NIAID 507601 16727 001935_GCAT 0 AAQM00000000 Draft 80000 0 9 0 0 Sanger USA Toxoplasmosis Parasite, Intracellular pathogen Eukaryota Apicomplexa Coccidia Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii EUKARYAL Toxoplasma gondii VEG VEG Toxoplasma gondii VEG Gi02483 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Paulsen I 432359 19097 003208_GCAT 0 AAYL01000000 Draft 0 0 9 0 0 Sanger USA Eukaryota Apicomplexa Coccidia Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii EUKARYAL Toxoplasma gondii Toxoplasma gondii Gi00663 Genome incomplete Public Sanger Institute, Univ of Cambridge Beowulf Genomics Berriman M mb4@sanger.ac.uk 5811 145 001936_GCAT 0 80000 0 9 0 0 United Kingdom Eukaryota Trichomonada Trichomonadida Trichomonadidae Trichomonas EUKARYAL Trichomonas vaginalis Trichomonas vaginalis Ge00050 EST incomplete Public Dalhousie Univ Medical, Human Pathogen 5722 12681 001937_GCAT 0 0 0 0 Canada Trichomoniasis, Sexually transmitted disease Pathogen Eukaryota Trichomonada Trichomonadida Trichomonadidae Trichomonas EUKARYAL Trichomonas vaginalis Trichomonas vaginalis Ge00051 EST incomplete Public Chang Gung Univ TIGR tgi@tigr.org Medical, Human Pathogen 5722 12683 001938_GCAT 0 0 0 0 China Trichomoniasis, Sexually transmitted disease Pathogen Eukaryota Trichomonada Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis EUKARYAL Trichomonas vaginalis G3 G3 Trichomonas vaginalis G3 Gi00667 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Carlton JM jane.carlton@med.nyu.edu Medical, Human Pathogen 412133 16084 001939_GCAT 0 NZ_AAHC00000000 Draft Level 2: High-Quality Draft 180000 0 32.8 USA Trichomoniasis, Sexually transmitted disease Host Pathogen, Parasite Eukaryota Trimastix EUKARYAL Trimastix pyriformis Trimastix pyriformis Ge00052 EST incomplete Public Montreal Univ Genome Canada, Genome-Quebec Gray MW mwgray@is.dal.ca 137420 12673 001940_GCAT 0 0 0 0 Canada Eukaryota Kinetoplastida Trypanosomatidae Trypanosoma Trypanosoma brucei EUKARYAL Trypanosoma brucei gambiense gambiense Gi00917 Genome incomplete Public Sanger Institute, Univ of Bristol Wellcome Trust Berriman M mb4@sanger.ac.uk Animal Pathogen, Medical, Human Pathogen 31285 001941_GCAT 0 5x 25000 0 11 0 0 Sanger United Kingdom Sleeping sickness Pathogen Eukaryota Kinetoplastida Trypanosomatidae Trypanosoma Trypanosoma carassii EUKARYAL Trypanosoma carassii Ge00053 EST incomplete Public IIB-UNSAM NIH-NIAID Sanchez DO dsanchez@iib.unsam.edu.ar 38249 001942_GCAT 0 0 0 0 Argentina Eukaryota Kinetoplastida Trypanosomatidae Trypanosoma Trypanosoma congolense EUKARYAL Trypanosoma congolense IL3000 IL3000 Trypanosoma congolense IL3000 Gi00670 Genome incomplete Public Sanger Institute, Univ of Cambridge, Glasgow Univ, International Livestock Institute, Instituto Oswaldo Cruz Wellcome Trust Berriman M mb4@sanger.ac.uk 5692 12958 001943_GCAT 0 1x 0 0 0 Sanger United Kingdom Eukaryota Kinetoplastida Trypanosomatidae Trypanosoma Trypanosoma rangeli EUKARYAL Trypanosoma rangeli SC-58, Choachi SC-58, Choachi Trypanosoma rangeli Choachi Ge00207 EST incomplete Public Univ Federal de Santa Catarina CNPq Grisard E grisard@ccb.ufsc.br Medical, Animal Pathogen 429131 18959 001944_GCAT 0 0 0 0 Brazil Pathogen, Parasite Eukaryota Kinetoplastida Trypanosomatidae Trypanosoma Trypanosoma vivax EUKARYAL Trypanosoma vivax Y486 Y486 Trypanosoma vivax Y486 Gi00672 Genome incomplete Public Sanger Institute, Univ of Cambridge, Glasgow Univ, International Livestock Institute, Instituto Oswaldo Cruz Wellcome Trust Berriman M mb4@sanger.ac.uk Medical, Animal Pathogen 5699 12957 001945_GCAT 0 5x 0 0 0 Sanger United Kingdom Pathogen, Parasite Eukaryota Microsporidia Enterocytozoonidae Enterocytozoon Enterocytozoon bieneusi EUKARYAL Enterocytozoon bieneusi H348 H348 Enterocytozoon bieneusi H348 Gi00230 Genome-Regions incomplete Public Tufts Univ NIH-NIAID Tzipori SV saul.tzipori@tufts.edu 481877 21011 001946_GCAT 0 NZ_ABGB00000000 Draft 0 0 0 USA Human feces Human feces Eukaryota Basidiomycota Sporidiobolales Sporobolomyces Sporobolomyces roseus EUKARYAL Sporobolomyces roseus IAM 13481 IAM 13481 Gi00767 Genome incomplete Public Trinity College, Dublin, DOE Joint Genome Institute DOE Wolfe K http://www.tcd.ie/Genetics/staff/Ken_Wolfe.html 40563 001948_GCAT 0 10000 0 0 International Eukaryota Microsporidia Spraguidae Spraguea Spraguea lophii EUKARYAL Spraguea lophii Gi00589 Genome incomplete Public Marine Biological Laboratory Sogin ML Sogin@mbl.edu 51541 001949_GCAT 0 6200 0 0 USA Eukaryota Ascomycota Dothideomycetes Pleosporales Phaeosphaeriaceae Phaeosphaeria Phaeosphaeria nodorum EUKARYAL Stagonospora (Phaeosphaeria) nodorum SN15 SN15 Phaeosphaeria nodorum SN15 Gi01060 Genome incomplete Public Broad Institute GRDC Oliver R roliver@murdoch.edu.au Agricultural, Wheat Pathogen, Plant Pathogen, Fungal Genome Initiative (FGI) 321614 13754 001950_GCAT 0 AAGI01000000 Draft 37100 0 0 Sanger USA Leaf and glume blotch Pathogen Eukaryota Ascomycota Dothideomycetes Pleosporales Pleosporaceae Alternaria Alternaria brassicicola EUKARYAL Alternaria brassicicola EGS 42-002, ATCC 96866 EGS 42-002, ATCC 96866 ATCC 96866 Gi01061 Genome incomplete Public Virginia Polytechnic Institute, Washington Univ USDA/ARS Lawrence, C https://www.vbi.vt.edu/article/articleview/304 29001 34523 001951_GCAT 0 ACIW00000000 Draft RCAP 6.4x 0 0 0 USA infected Brassica oleracea (cabbage) seed Brassica oleracea Eukaryota Ascomycota Eurotiomycetes Onygenales Ascosphaeraceae Ascosphaera Ascosphaera apis EUKARYAL Ascosphaera apis USDA-ARSEF 7405 USDA-ARSEF 7405 Ascosphaera apis USDA-ARSEF 7405 Gi01092 Genome incomplete Public BCM-HGSC USDA/ARS Highlander, SK sarahh@bcm.tmc.edu 392613 17285 001952_GCAT 0 AARE00000000 Draft 4x 24000 0 0 Sanger USA Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Aspergillus Aspergillus flavus EUKARYAL Aspergillus flavus Aspergillus flavus Ge00054 EST incomplete Public Univ of Oklahoma NSF/EPSCoR Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Medical, Human Pathogen 5059 13175 001953_GCAT 0 1400 0 8 0 0 USA Aspergillosis Pathogen, Aflatoxin producer Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Aspergillus Aspergillus flavus EUKARYAL Aspergillus flavus NRRL3357 NRRL3357 Aspergillus flavus NRRL3357 NRRL3357 Gi01283 Genome incomplete Public J. Craig Venter Institute, North Carolina State Univ USDA Agricultural, Plant Pathogen, Medical, Human Pathogen 332952 13284 001954_GCAT 0 AAIH00000000 Draft 5x 36000 0 8 0 0 Sanger USA Aspergillosis Pathogen, Aflatoxin producer Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Aspergillus Aspergillus flavus EUKARYAL Aspergillus flavus NRRL3357 NRRL3357 Aspergillus flavus NRRL3357 NRRL3357 Ge00261 EST incomplete Public J. Craig Venter Institute, USDA/ARS Agricultural, Plant Pathogen, Medical, Human Pathogen 332952 13285 002862_GCAT 0 26110 0 0 USA Aspergillosis Pathogen, Aflatoxin producer Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Aspergillus Aspergillus fumigatus EUKARYAL Aspergillus fumigatus A1163 (CEA10) A1163 (CEA10) Aspergillus fumigatus A1163 Gi00037 Genome incomplete Public J. Craig Venter Institute, Merck Animal Pathogen, Medical, Human Pathogen 451804 18733 001955_GCAT 0 ABDB00000000 Draft 10x 30000 0 8 0 0 Sanger USA clinical isolate clinical isolate Aspergillosis Pathogen Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Emericella EUKARYAL Aspergillus (Emericella) nidulans Gi00039 Genome incomplete Proprietary Cereon Genomics Medical, Human Pathogen 162425 001956_GCAT 0 31000 0 8 0 0 USA Aspergillosis Pathogen Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Emericella Emericella nidulans EUKARYAL Aspergillus nidulans FGSC A26(biA1) FGSC A26(biA1) Aspergillus nidulans FGSC-A26(biA1) Ge00055 EST incomplete Public Univ of Oklahoma Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Human Pathogen, Medical 227321 362 001957_GCAT 0 14900 0 8 0 0 USA Aspergillosis Pathogen Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Aspergillus EUKARYAL Aspergillus niger NRRL3, DSM2466 NRRL3, DSM2466 DSM2466 Gi00042 Genome incomplete Proprietary Integrated Genomics Inc Integrated Genomics Inc contact contact@integratedgenomics.com Fermentation, Biotechnological 5061 001958_GCAT 0 0 0 0 USA Filament-shaped None Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Aspergillus Aspergillus niger EUKARYAL Aspergillus niger ATCC 1015 ATCC 1015 Aspergillus niger ATCC 1015 Gi00977 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Fermentation, Biotechnological 380704 15785 001959_GCAT 0 8.9x 32000 0 0 Sanger USA Filament-shaped None Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Aspergillus EUKARYAL Aspergillus niger A733 (Wild-type A) A733 (Wild-type A) Ge00245 EST incomplete Public Concordia Univ NSERC Fermentation, Biotechnological 5061 002846_GCAT 0 0 0 0 USA Filament-shaped None Eukaryota Ascomycota Amorphothecaceae Amorphotheca EUKARYAL Amorphotheca resinae DAOM194228 DAOM194228 creosote fungus DAOM194228 Ge00246 EST incomplete Public Concordia Univ Genome Canada Environmental, Biotechnological 5101 002847_GCAT 0 0 0 0 Canada None Soil 20 Eukaryota Ascomycota Dothideomycetes et Chaetothyriomycetes incertae sedis Dothioraceae Aureobasidium Aureobasidium pullulans EUKARYAL Aureobasidium pullulans ATCC 62921 ATCC 62921 NRRL Y-2311-1, ATCC 62921 Ge00247 EST incomplete Public Concordia Univ Genome Canada Plant Pathogen, Agricultural 5580 002848_GCAT 0 0 0 0 Canada Stigmatomycosis Soil 10 - 35 Pathogen Eukaryota Basidiomycota Tremellomycetes Tremellales Cryptococcus Cryptococcus laurentii EUKARYAL Cryptococcus laurentii UAMH 633 UAMH 633 Ge00248 EST incomplete Public Concordia Univ Genome Canada 5418 002849_GCAT 0 0 0 0 Canada Eukaryota Mucorales Cunninghamellaceae Cunninghamella Cunninghamella elegans EUKARYAL Cunninghamella elegans ATCC 36112 ATCC 36112 ATCC 36112 Ge00249 EST incomplete Public Concordia Univ Genome Canada 4853 002850_GCAT 0 0 0 0 Canada Sygomycosis Soil Eukaryota Ascomycota Eurotiomycetes Onygenales Geomyces EUKARYAL Geomyces pannorum UAMH 1568 UAMH 1568 UAMH 1568 Ge00250 EST incomplete Public Concordia Univ Genome Canada 79858 002851_GCAT 0 0 0 0 Canada Eukaryota Basidiomycota Agaricomycetes Gloeophyllales Gloeophyllaceae Gloeophyllum Gloeophyllum trabeum EUKARYAL Gloeophyllum trabeum ATCC 11539 ATCC 11539 ATCC 11539 Ge00251 EST incomplete Public Concordia Univ Genome Canada 104355 002852_GCAT 0 0 0 0 Canada Wood Lignin degrader, Cellulose degrader Eukaryota Basidiomycota Agaricomycetes Agaricales Tricholomataceae Lentinula EUKARYAL Lentinula edodes ATCC 48564 ATCC 48564 shiitake mushroom ATCC 48564 Ge00252 EST incomplete Public Concordia Univ Genome Canada Food industry 5353 002853_GCAT 0 0 0 0 Canada Eukaryota Basidiomycota Leucosporidiales Leucosporidium Leucosporidium scottii EUKARYAL Leucosporidium scottii ATCC 90774 ATCC 90774 ATCC 90774 Ge00253 EST incomplete Public Concordia Univ Genome Canada 5278 002854_GCAT 0 0 0 0 Canada Psychrotolerant Snow, Soil, Fresh water, Antarctic 15 - 30 Eukaryota Ascomycota Sordariomycetes Sordariales Chaetomiaceae Thielavia EUKARYAL Myceliophthora thermophila ATCC 42464 ATCC 42464 ATCC 42464 Ge00254 EST incomplete Public Concordia Univ Genome Canada 78579 002855_GCAT 0 0 0 0 Canada Thermophile Soil 25 - 55 Eukaryota Ascomycota Sordariomycetes Ophiostomatales Ophiostomataceae Ophiostoma Ophiostoma piliferum EUKARYAL Ophiostoma piliferum FCC 55A FCC 55A FCC 55A Ge00255 EST incomplete Public Concordia Univ Genome Canada 38032 002856_GCAT 0 0 0 0 Canada Eukaryota Basidiomycota Agaricomycetes Corticiales Corticiaceae Phanerochaete EUKARYAL Phanerochaete chrysosporium RP78 RP78 Ge00256 EST incomplete Public Concordia Univ Genome Canada 5306 002857_GCAT 0 0 0 0 Canada Eukaryota Ascomycota Thermomyces EUKARYAL Thermomyces lanuginosus ATCC 200065 ATCC 200065 ATCC 200065 Ge00257 EST incomplete Public Concordia Univ Genome Canada 5541 002858_GCAT 0 0 0 0 Canada Thermophile Soil 30 - 55 Eukaryota Basidiomycota Agaricomycetes Polyporales Coriolaceae Trametes EUKARYAL Trametes versicolor 52P, ATCC 20869 52P, ATCC 20869 ATCC 20869 Ge00258 EST incomplete Public Concordia Univ Genome Canada 5325 002859_GCAT 0 0 0 0 Canada Soil Lignin degrader, Cellulose degrader Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Aspergillus Aspergillus parasiticus EUKARYAL Aspergillus parasiticus Aspergillus parasiticus Gi00568 Genome incomplete Public Univ of Oklahoma Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Agricultural 5067 129 001960_GCAT 0 0 0 0 USA Aflatoxin producer Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Aspergillus Aspergillus terreus EUKARYAL Aspergillus terreus ATCC 20542 ATCC 20542 Aspergillus terreus ATCC 20542 Gi00569 Genome incomplete Public Microbia Biotechnological, Pharmaceutical, Medical 285217 187 001961_GCAT 0 AABT01000000 Draft 35000 0 0 Sanger USA Statins producer Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Aspergillus Aspergillus terreus EUKARYAL Aspergillus terreus NIH 2624 NIH 2624 Aspergillus terreus NIH2624 Gi01062 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu ATEG Biotechnological, Pharmaceutical, Medical, Fungal Genome Initiative (FGI) 341663 15631 001962_GCAT 640281008 AABT01000000 Draft 11x 35000 10556 0 Sanger USA Statins producer Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Aspergillus Aspergillus clavatus EUKARYAL Aspergillus clavatus NRRL1 NRRL1 Aspergillus clavatus NRRL 1 Gi01063 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Animal Pathogen, Medical, Human Pathogen 344612 15664 001963_GCAT 0 NZ_AAKD00000000 Draft Level 2: High-Quality Draft 11.4x 27850 0 49.2 Sanger USA Soil, Animal manure Pathogen, Allergenic Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Neosartorya Neosartorya fischeri EUKARYAL Neosartorya fischeri NRRL 181 NRRL 181 Neosartorya fischeri NRRL 181 Gi01064 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Medical, Human Pathogen 331117 15672 001964_GCAT 0 NZ_AAKE00000000 Draft 32542 0 49 Sanger USA Pulmonary aspergillosis, Keratitis Soil Pathogen Eukaryota Chytridiomycota Chytridiomycetes Chytridiales Batrachochytrium Batrachochytrium dendrobatidis EUKARYAL Batrachochytrium dendrobatidis JEL423 JEL423 Batrachochytrium dendrobatidis JEL423 Gi00978 Genome incomplete Public Broad Institute NIH-NHGRI Animal Pathogen, Medical, Fungal Genome Initiative (FGI), Frog Pathogen 403673 13653 001965_GCAT 0 AATT00000000 7.4x 20000 0 20 0 43 Sanger USA Chytridiomycosis Fresh water Pathogen, Non-filamentous, Chytrid Eukaryota Chytridiomycota Chytridiomycetes Chytridiales Batrachochytrium Batrachochytrium dendrobatidis EUKARYAL Batrachochytrium dendrobatidis JAM81 JAM81 Gi01093 Genome incomplete Public DOE Joint Genome Institute, Univ of California, Berkeley DOE Bruce D microbes@cuba.jgi-psf.org Animal Pathogen, Medical, Frog Pathogen 109871 001966_GCAT 0 40000 0 20 0 43 USA Chytridiomycosis Fresh water Pathogen, Non-filamentous, Chytrid Eukaryota Ascomycota Sordariomycetes Hypocreales Cordycipitaceae Cordyceps EUKARYAL Beauveria (Cordyceps) bassiana Ge00222 EST incomplete Public Univ of Florida NSF Keyhani NO keyhani@ufl.edu 176275 001967_GCAT 0 0 0 0 USA Eukaryota Ascomycota Leotiomycetes Erysiphaceae Blumeria EUKARYAL Blumeria graminis Ge00056 EST incomplete Public ACNFP, Carlsberg Research Center Plant Pathogen, Agricultural 34373 001968_GCAT 0 0 0 0 International Pathogen Eukaryota Ascomycota Leotiomycetes Helotiales Sclerotiniaceae Botryotinia EUKARYAL Botryotinia fuckeliana Ge00058 EST incomplete Proprietary Genesis Plant Pathogen, Agricultural 40559 001970_GCAT 0 0 0 0 New Zealand Filament-shaped Gray mold rot, Botrytis blight Pathogen Eukaryota Ascomycota Leotiomycetes Helotiales Sclerotiniaceae Botryotinia Botryotinia fuckeliana EUKARYAL Botryotinia (Botrytis) fuckeliana (cinerea) B05.10 B05.10 Botryotinia fuckeliana B05.10 Gi00781 Genome incomplete Public Syngenta AG, Broad Institute Agricultural, Plant Pathogen, Fungal Genome Initiative (FGI) 332648 15632 001971_GCAT 0 AAID00000000 Draft 5.4x 38000 0 0 Sanger USA Filament-shaped Gray mold rot, Botrytis blight Pathogen Eukaryota Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces macrogynus EUKARYAL Allomyces macrogynus Gi02368 Genome incomplete Public Broad Institute NIH-NHGRI Fungal Genome Initiative (FGI) 28583 003102_GCAT 0 6x 30000 0 0 Sanger USA Eukaryota Mortierellales Mortierellaceae Mortierella Mortierella verticillata EUKARYAL Mortierella verticillata Gi02369 Genome incomplete Public Broad Institute NIH-NHGRI Fungal Genome Initiative (FGI) 78898 003103_GCAT 0 2x 0 0 0 Sanger USA Eukaryota Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus EUKARYAL Spizellomyces punctatus Gi02370 Genome incomplete Public Broad Institute NIH-NHGRI Fungal Genome Initiative (FGI) 109760 003103_GCAT 0 2x 0 0 0 Sanger USA Eukaryota Basidiomycota Pucciniales Melampsoraceae Melampsora EUKARYAL Melampsora laricis-populina 98AG31_300 98AG31_300 Gi02371 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 203908 003105_GCAT 0 Complete 0 0 0 USA Eukaryota Ascomycota Eurotiomycetes Onygenales Arthrodermataceae Trichophyton Trichophyton equinum EUKARYAL Trichophyton equinum CBS 127.97 CBS 127.97 Trichophyton equinum CBS127.97 Gi02372 Genome incomplete Public Broad Institute NIH-NHGRI Fungal Genome Initiative (FGI), Medical, Horse Pathogen 559882 20577 003106_GCAT 0 Draft 5x 22000 0 0 Sanger USA Ringworm Dermatophyte Eukaryota Ascomycota Eurotiomycetes Onygenales Arthrodermataceae Trichophyton Trichophyton rubrum EUKARYAL Trichophyton rubrum CBS 118892 CBS 118892 Gi02373 Genome incomplete Public Broad Institute NIH-NHGRI Fungal Genome Initiative (FGI), Medical, Human Pathogen 5551 003107_GCAT 0 8x 22000 0 0 Sanger USA Skin infection Dermatophyte Eukaryota Ascomycota Eurotiomycetes Onygenales Arthrodermataceae Trichophyton Trichophyton tonsurans EUKARYAL Trichophyton tonsurans CBS 112817 CBS 112817 Gi02374 Genome incomplete Public Broad Institute NIH-NHGRI Fungal Genome Initiative (FGI), Human Pathogen, Medical 34387 003108_GCAT 0 5x 22000 0 0 Sanger USA Scalp infection Dermatophyte Eukaryota Ascomycota Eurotiomycetes Onygenales Arthrodermataceae Microsporum Microsporum canis EUKARYAL Microsporum canis CBS 113480 CBS 113480 Microsporum canis CBS 113480 CBS113480 Gi02375 Genome incomplete Public Broad Institute NIH-NHGRI Animal Pathogen, Medical, Human Pathogen, Fungal Genome Initiative (FGI) 554155 30939 003109_GCAT 0 Draft 8x 22000 0 0 Sanger USA Ringworm, Tinea capitis Dermatophyte Eukaryota Ascomycota Eurotiomycetes Onygenales Arthrodermataceae Arthroderma Arthroderma gypseum EUKARYAL Microsporum (Arthroderma) gypseum CBS 118893 CBS 118893 Arthroderma gypseum CBS 118893 Gi02376 Genome incomplete Public Broad Institute NIH-NHGRI Fungal Genome Initiative (FGI), Medical, Human Pathogen 535722 20599 003110_GCAT 0 Draft 9x 22000 0 0 Sanger USA Soil Skin infection Soil Dermatophyte Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae 273614X 273614X Gi02377 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003111_GCAT 0 1.3x 0 0 0 Sanger United Kingdom Fecal sample from Newcastle UK Fecal sample from Newcastle UK 54.97784 -1.612916 Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae 322134S 322134S Gi02378 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003112_GCAT 0 1.4x 0 0 0 Sanger United Kingdom Throat-sputum isolate from Newcastle, UK United Kingdom Throat-sputum isolate from Newcastle, UK 54.97784 -1.612916 Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae 378604X 378604X Gi02379 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003113_GCAT 0 1.4x 0 0 0 Sanger United Kingdom Sputum isolate from Newcastel UK United Kingdom Sputum isolate from Newcastel UK 54.97784 -1.612916 Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae BC187 BC187 Gi02380 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003114_GCAT 0 0.7x 0 0 0 Sanger United Kingdom Barrel fermentation from Napa Valley USA USA Barrel fermentation from Napa Valley USA 36.792405 -119.418068 Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae DBVPG1106 DBVPG1106 Gi02381 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003115_GCAT 0 1.1x 0 0 0 Sanger United Kingdom Grapes from Australia Grapes from Australia Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae DBVPG1373 DBVPG1373 Gi02382 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003116_GCAT 0 1.4x 0 0 0 Sanger United Kingdom Soil from the Netherlands Soil from the Netherlands Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae DBVPG1788 DBVPG1788 Gi02383 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003117_GCAT 0 1.3x 0 0 0 Sanger United Kingdom Soil from Finland Soil from Finland Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae DBVPG1853 DBVPG1853 Gi02384 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003118_GCAT 0 1x 0 0 0 Sanger United Kingdom Bili wine from West Africa Bili wine from West Africa Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae DBVPG6765 DBVPG6765 Gi02385 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003119_GCAT 0 3.5x 0 0 0 Sanger United Kingdom Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae K11 K11 Gi02386 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003120_GCAT 0 1.3x 0 0 0 Sanger United Kingdom Shochu Sake strain Shochu Sake strain Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae L-1374 L-1374 Gi02387 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003121_GCAT 0 1.1x 0 0 0 Sanger United Kingdom From wine From wine Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae L-1528 L-1528 Gi02388 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003122_GCAT 0 1.2x 0 0 0 Sanger United Kingdom From Wine From Wine Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae NCYC110 NCYC110 Gi02389 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003123_GCAT 0 1.3x 0 0 0 Sanger United Kingdom Ginger beer from Z. officinale Ginger beer from Z. officinale Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae NCYC361 NCYC361 Gi02390 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003124_GCAT 0 0.9x 0 0 0 Sanger United Kingdom Beer spoilage strain from wort Beer spoilage strain from wort Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae S288c S288c S288C, ATCC 26108 Gi02391 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003125_GCAT 0 1.3x 0 0 0 Sanger, 454 United Kingdom Rotting fig from California USA Rotting fig from California USA Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae SK1 SK1 Gi02392 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003125_GCAT 0 3.8x 0 0 0 Sanger, 454 United Kingdom Soil Soil Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae UWOPS03-461.4 UWOPS03-461.4 Gi02393 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003127_GCAT 0 1.4x 0 0 0 Sanger United Kingdom Nectar, Bertam palm Nectar, Bertam palm Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae UWOPS05-217.3 UWOPS05-217.3 Gi02394 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003128_GCAT 0 1.4x 0 0 0 Sanger United Kingdom Nectar, Bertam palm Nectar, Bertam palm Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae UWOPS05-227.2 UWOPS05-227.2 Gi02395 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003129_GCAT 0 1.4x 0 0 0 Sanger United Kingdom Trigona, Bertam palm Trigona, Bertam palm Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae UWOPS83-787.3 UWOPS83-787.3 Gi02396 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003130_GCAT 0 1.4x 0 0 0 Sanger United Kingdom Fruit, Opuntia stricta Fruit, Opuntia stricta Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae UWOPS87-2421 UWOPS87-2421 Gi02397 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003131_GCAT 0 1.4x 0 0 0 Sanger United Kingdom Cladode, Opuntia megacantha Cladode, Opuntia megacantha Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae W303 W303 Gi02398 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003132_GCAT 0 3.7x 0 0 0 Sanger, 454 United Kingdom Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae Y12 (NRRL-Y12663) Y12 (NRRL-Y12663) Gi02399 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003133_GCAT 0 1.3x 0 0 0 Sanger United Kingdom Palm wine strain Palm wine strain Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae Y55 Y55 Gi02400 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003134_GCAT 0 4.1x 0 0 0 Sanger, 454 United Kingdom Lab strain Lab strain Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae Y9 (NRRL-Y5997) Y9 (NRRL-Y5997) Gi02401 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003135_GCAT 0 1.2x 0 0 0 Sanger United Kingdom Ragi from Japan Ragi from Japan Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae YGPM YGPM Gi02402 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003136_GCAT 0 1.6x 0 0 0 Sanger United Kingdom Rotting fig Rotting fig Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae YIIc17-E5 YIIc17-E5 Gi02403 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003137_GCAT 0 1.5x 0 0 0 Sanger United Kingdom Wine from Sauternes, France France Wine from Sauternes, France 44.53447 -0.343195 Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae YJM975 YJM975 Gi02404 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003138_GCAT 0 1.5x 0 0 0 Sanger United Kingdom Vaginal isolate from Bergamo Italy Italy Vaginal isolate from Bergamo Italy 45.694903 9.669953 Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae YJM978 YJM978 Gi02405 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003139_GCAT 0 1.5x 0 0 0 Sanger United Kingdom Vaginal isolate from Bergamo Italy Italy Vaginal isolate from Bergamo Italy 45.694903 9.669953 Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae YJM981 YJM981 Gi02406 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003140_GCAT 0 1.3x 0 0 0 Sanger United Kingdom Vaginal isolate from Bergamo Italy Italy Vaginal isolate from Bergamo Italy 45.694903 9.669953 Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae YPS128 YPS128 Gi02407 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003141_GCAT 0 1.4x 0 0 0 Sanger United Kingdom Oak from Pennsylvania USA Oak from Pennsylvania USA Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae YPS606 YPS606 Gi02408 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003142_GCAT 0 1.7x 0 0 0 Sanger United Kingdom Oak from Pennsylvania USA Oak from Pennsylvania USA Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae YS2 YS2 Gi02409 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003143_GCAT 0 1.0x 0 0 0 Sanger United Kingdom Baker strain from Australia Baker strain from Australia Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae YS4 YS4 Gi02410 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003144_GCAT 0 1.5x 0 0 0 Sanger United Kingdom Baker strain from the Netherlands Baker strain from the Netherlands Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae YS9 YS9 Gi02411 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 4932 003145_GCAT 0 1.5x 0 0 0 Sanger United Kingdom Baker strain from Singapore Baker strain from Singapore Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus A12 A12 Gi02412 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003146_GCAT 0 1.4x 0 0 0 Sanger United Kingdom Oak from Canada Oak from Canada Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus A4 A4 Gi02413 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003147_GCAT 0 1.4x 0 0 0 Sanger United Kingdom Oak from Canada Oak from Canada Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus CBS432 CBS432 Gi02414 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003148_GCAT 0 6.3x 0 0 0 Sanger United Kingdom Oak from Russia Oak from Russia Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus CBS5829 CBS5829 Gi02415 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003149_GCAT 0 3x 0 0 0 Sanger United Kingdom Soil from Denmark Soil from Denmark Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus DBVPG4650 DBVPG4650 Gi02416 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003150_GCAT 0 1.6x 0 0 0 Sanger United Kingdom Guano from Italy Guano from Italy Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus DBVPG6304 DBVPG6304 Gi02417 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003151_GCAT 0 1.7x 0 0 0 Sanger United Kingdom Drosophila from California USA Drosophila from California USA Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus IFO1804 IFO1804 Gi02418 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003152_GCAT 0 1.2x 0 0 0 Sanger United Kingdom Oak from Japan Oak from Japan Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus KPN3828 KPN3828 Gi02419 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003153_GCAT 0 1.2x 0 0 0 Sanger United Kingdom Oak from Siberia Oak from Siberia Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus KPN3829 KPN3829 Gi02420 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003154_GCAT 0 1.1x 0 0 0 Sanger United Kingdom Oak from Siberia Oak from Siberia Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus N-17 N-17 Gi02421 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003155_GCAT 0 3.2x 0 0 0 Sanger United Kingdom Oak from Russia Oak from Russia Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus N-43 N-43 Gi02422 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003156_GCAT 0 1.7x 0 0 0 Sanger United Kingdom Oak from far eastern Russia Oak from far eastern Russia Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus N-44 N-44 Gi02423 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003157_GCAT 0 1.4x 0 0 0 Sanger United Kingdom Oak from far eastern Russia Oak from far eastern Russia Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus N-45 N-45 Gi02424 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003158_GCAT 0 3.7x 0 0 0 Sanger United Kingdom Oak from far eastern Russia Oak from far eastern Russia Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Q31.4 Q31.4 Gi02425 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003159_GCAT 0 0 0 0 454 United Kingdom Oak from London UK Oak from London UK Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Q32.3 Q32.3 Gi02426 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003160_GCAT 0 1.3x 0 0 0 Sanger United Kingdom Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Q59.1 Q59.1 Gi02427 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003161_GCAT 0 1.4x 0 0 0 Sanger United Kingdom Oak in London UK United Kingdom Oak in London UK 51.500152 -0.126236 Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Q62.5 Q62.5 Gi02428 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003162_GCAT 0 1.4x 0 0 0 Sanger United Kingdom Oak from London UK Oak from London UK Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Q69.8 Q69.8 Gi02429 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003163_GCAT 0 0 0 0 454 United Kingdom Oak from London UK Oak from London UK Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Q74.4 Q74.4 Gi02430 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003164_GCAT 0 0 0 0 454 United Kingdom Oak from London UK Oak from London UK Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Q89.8 Q89.8 Gi02431 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003165_GCAT 0 0.9x 0 0 0 Sanger United Kingdom Oak from London UK Oak from London UK Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Q95.3 Q95.3 Gi02432 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003166_GCAT 0 1.5x 0 0 0 Sanger United Kingdom Oak from London UK Oak from London UK Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus S36.7 S36.7 Gi02433 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003167_GCAT 0 0.7x 0 0 0 Sanger United Kingdom Oak from London UK Oak from London UK Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus T21.4 T21.4 Gi02434 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003168_GCAT 0 1.5x 0 0 0 Sanger United Kingdom Oak from London UK Oak from London UK Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus UFRJ50791 UFRJ50791 Gi02435 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003169_GCAT 0 1.0x 0 0 0 Sanger United Kingdom Drosophila from Catalao Point Brazil Drosophila from Catalao Point Brazil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus UFRJ50816 UFRJ50816 Gi02436 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003170_GCAT 0 1.4x 0 0 0 Sanger United Kingdom Drosophila from Tijuca Forest Brazil Brazil Drosophila from Tijuca Forest Brazil -22.970077 -43.256963 Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus UWOPS91-917.1 UWOPS91-917.1 Gi02437 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003171_GCAT 0 3.0x 0 0 0 Sanger United Kingdom Flux, Myoporum from Hawaii Flux, Myoporum from Hawaii Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus W7 W7 Gi02438 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003172_GCAT 0 0 0 0 454 United Kingdom Oak from London UK Oak from London UK Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Y6.5 Y6.5 Gi02439 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003173_GCAT 0 1.1x 0 0 0 Sanger United Kingdom Oak from London UK Oak from London UK Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Y7 Y7 Gi02440 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003174_GCAT 0 1.2x 0 0 0 Sanger United Kingdom Oak from London UK Oak from London UK Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Y8.1 Y8.1 Gi02441 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003175_GCAT 0 0 0 0 454 United Kingdom Oak from London UK Oak from London UK Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Y8.5 Y8.5 Gi02442 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003176_GCAT 0 0 0 0 454 United Kingdom Oak from London UK Oak from London UK Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Y9.6 Y9.6 Gi02443 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003177_GCAT 0 0 0 0 454 United Kingdom Oak from London UK Oak from London UK Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus YPS138 YPS138 Gi02444 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003178_GCAT 0 1.4x 0 0 0 Sanger United Kingdom Oak from Pennsylvania USA Oak from Pennsylvania USA Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Z1 Z1 Gi02445 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003179_GCAT 0 0 0 0 Sanger United Kingdom Oak from London UK United Kingdom Oak from London UK 51.500152 -0.126236 Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus Z1.1 Z1.1 Gi02446 Genome incomplete Public Sanger Institute Carter D dmc@sanger.ac.uk Saccharomyces Genome Resequencing Project (SGRP) 27291 003180_GCAT 0 1.0x 0 0 0 Sanger United Kingdom Oak from London UK United Kingdom Oak from London UK 51.500152 -0.126236 Eukaryota Ascomycota Leotiomycetes Helotiales Sclerotiniaceae Botryotinia EUKARYAL Botryotinia (Botrytis) fuckeliana (cinerea) Botryotinia fuckeliana Gi01237 Genome incomplete Public Bayer CropScience, Genoscope Wincker P pwincker@genoscope.cns.fr Plant Pathogen, Agricultural 40559 16118 001972_GCAT 0 10x 30000 0 0 Sanger France Filament-shaped Botrytis blight, Gray mold rot Pathogen Eukaryota Microsporidia Nosematidae Brachiola EUKARYAL Brachiola algerae Gi01065 Genome incomplete Public Genoscope 33691 001973_GCAT 0 10000 0 0 France Eukaryota Ascomycota Saccharomycetes Saccharomycetales Candida EUKARYAL Candida albicans 1161 1161 Candida albicans 1161 Gi00125 Genome incomplete Public Sanger Institute, Univ of Aberdeen Beowulf Genomics Barrell B barrell@sanger.ac.uk Medical, Human Pathogen 5476 10771 001974_GCAT 0 15000 0 8 0 0 United Kingdom Oral infection, Vaginal infection Pathogen Eukaryota Ascomycota Saccharomycetes Saccharomycetales Candida Candida albicans EUKARYAL Candida albicans WO-1 WO-1 Candida albicans WO-1 Gi00124 Genome incomplete Public Broad Institute NIH-NHGRI Fungal Genome Initiative (FGI), Medical, Human Pathogen 294748 16373 001976_GCAT 0 AAFO00000000 Draft Level 2: High-Quality Draft 10x 30000 6160 8 0 0 Sanger USA Oral infection, Vaginal infection Pathogen Eukaryota Ascomycota Saccharomycetes Saccharomycetales Candida Candida dubliniensis EUKARYAL Candida dubliniensis CD36 CD36 CBS 7987, ATCC MYA-646 Yes Gc01044 Gi00355 Genome Complete and Published Public Sanger Institute, Trinity College, Dublin, Univ of Aberdeen Wellcome Trust Berriman M mb4@sanger.ac.uk 2009-02-16 Genome Research Epub Human Pathogen, Medical 42374 34697 001977_GCAT 0 NC_012860 Complete Level 2: High-Quality Draft 11x 14618 6094 7 0 33 Sanger United Kingdom Oral cavity of HIV-infected patient, Dublin, Ireland Ireland Dublin, Ireland 53.344104 -6.267494 Homo sapiens HIV-infected patient Oral Oral candidosis Pathogen Eukaryota Ascomycota Saccharomycetes Saccharomycetales Candida Candida parapsilosis EUKARYAL Candida parapsilosis CDC317 CDC317 Candida parapsilosis CDC317 Gi01372 Genome incomplete Public Sanger Institute Wellcome Trust Berriman M mb4@sanger.ac.uk Medical, Human Pathogen 578454 32889 001978_GCAT 0 CABE00000000 Draft 9.2x 13100 0 7 0 0 Sanger United Kingdom Hands of a hospital worker, who was the source for an outbreak of infection in a Mississippi community hospital in 2001 2001 Hands of a hospital worker, who was the source for an outbreak of infection in a Mississippi community hospital in 2001 Homo sapiens Male Skin Nosocomial infection Pathogen Eukaryota Ascomycota Saccharomycetes Saccharomycetales Metschnikowiaceae Clavispora Clavispora lusitaniae EUKARYAL Candida (Clavispora) lusitaniae ATCC 42720 ATCC 42720 Clavispora lusitaniae ATCC 42720 ATCC 42720 Gi00129 Genome incomplete Public Broad Institute NIH-NHGRI Fungal Genome Initiative (FGI), Medical, Human Pathogen 306902 12753 001979_GCAT 0 AAFT00000000 Draft 9x 16000 0 0 Sanger USA Candidiasis, Candidemia Pathogen Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Pichia Pichia guilliermondii EUKARYAL Candida (Pichia) guilliermondii ATCC 6260 ATCC 6260 Pichia guilliermondii ATCC 6260 ATCC 6260 Gi00130 Genome incomplete Public Broad Institute NIH-NHGRI Fungal Genome Initiative (FGI) 294746 12729 001980_GCAT 0 AAFM01000000 Draft 12x 12000 0 0 Sanger USA None Non-Pathogen Eukaryota Ascomycota Sordariomycetes Ophiostomatales Ophiostomataceae Grosmannia EUKARYAL Grosmannia (Ophiostoma) clavigera Blue stain fungus Gi01924 Genome incomplete Public BCGSC Ministry of Forests and Range 226899 002548_GCAT 0 0 0 0 USA None Eukaryota Florideophyceae Gigartinales Gigartinaceae Chondrus EUKARYAL Chondrus crispus Irish moss Gi01925 Genome incomplete Public Genoscope CNRG Biotechnological 2769 002549_GCAT 0 0 0 0 France None Carrageenan producer Eukaryota Ascomycota Saccharomycetes Saccharomycetales Candida Candida tropicalis EUKARYAL Candida tropicalis CBS94 CBS94 Candida tropicalis CBS 94 Gi01909 Genome-Regions incomplete Public CNRS, Institut Pasteur BRG Ozier-Kalogeropoulos O odozier@pasteur.fr Medical, Human Pathogen 5482 12497 001981_GCAT 0 0.2x 15000 0 6 0 0 Sanger France Candidemia Pathogen Eukaryota Ascomycota Saccharomycetes Saccharomycetales Candida Candida tropicalis EUKARYAL Candida tropicalis T1 MYA-3404 T1 MYA-3404 Candida tropicalis MYA-3404 Gi00128 Genome incomplete Public Broad Institute NIH-NHGRI Fungal Genome Initiative (FGI), Medical, Human Pathogen 294747 13675 001982_GCAT 0 AAFN00000000 Draft 10x 15000 0 6 0 0 Sanger USA Candidemia Pathogen Eukaryota Ascomycota Sordariomycetes Sordariales Chaetomiaceae Chaetomium Chaetomium globosum EUKARYAL Chaetomium globosum CBS 148.51 CBS 148.51 Chaetomium globosum CBS 148.51 Gi00136 Genome incomplete Public Broad Institute NIH-NHGRI Fungal Genome Initiative (FGI), Medical, Human Pathogen 306901 12795 001983_GCAT 0 NZ_AAFU00000000 Draft 7x 34336 0 55.6 Sanger USA Skin infection, Nail infection Cellulosic substrates Mycotoxin producer Eukaryota Ascomycota Eurotiomycetes Onygenales Chrysosporium Chrysosporium lucknowense EUKARYAL Chrysosporium lucknowense Gi00979 Genome incomplete Proprietary Dyadic International, Agencourt Bioscience 85845 001984_GCAT 0 0 0 0 USA Eukaryota Ascomycota Eurotiomycetes Onygenales Coccidioides Coccidioides posadasii EUKARYAL Coccidioides posadasii C735 C735 Coccidioides posadasii C735 Gi00166 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Gardner MJ gardner@tigr.org Biothreat, Medical, Human Pathogen 222929 9616 001985_GCAT 0 28000 0 4 0 0 Sanger USA Valley fever, Coccidioidomycosis Soil Pathogen, Dimorphic Eukaryota Ascomycota Eurotiomycetes Onygenales Coccidioides Coccidioides immitis EUKARYAL Coccidioides immitis RS RS Coccidioides immitis RS Gi00165 Genome incomplete Public Broad Institute NIH-NHGRI MSC msc@broad.mit.edu Biothreat, Medical, Human Pathogen, Fungal Genome Initiative (FGI) 246410 12883 001986_GCAT 0 NZ_AAEC00000000 Draft 14.4x 28889 10457 46 Sanger USA Valley fever, Coccidioidomycosis Soil Pathogen Eukaryota Ascomycota Eurotiomycetes Onygenales Coccidioides Coccidioides immitis EUKARYAL Coccidioides immitis H538.4 H538.4 Coccidioides immitis H538.4 Gi01213 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Biothreat, Medical, Human Pathogen, Fungal Genome Initiative (FGI) 396776 17355 001987_GCAT 0 AASO00000000 Complete 3.41x 27732 0 46.9 Sanger USA Valley fever, Coccidioidomycosis Soil Pathogen Eukaryota Ascomycota Eurotiomycetes Onygenales Coccidioides Coccidioides immitis EUKARYAL Coccidioides immitis RMSCC 2394 RMSCC 2394 Coccidioides immitis RMSCC 2394 Gi01214 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Biothreat, Medical, Human Pathogen, Fungal Genome Initiative (FGI) 404692 17713 001988_GCAT 0 NZ_AATX00000000 Draft 8.22x 28817 0 46 Sanger USA Valley fever, Coccidioidomycosis Soil Pathogen Eukaryota Ascomycota Eurotiomycetes Onygenales Coccidioides Coccidioides immitis EUKARYAL Coccidioides immitis RMSCC 3703 RMSCC 3703 Coccidioides immitis RMSCC 3703 Gi01215 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Biothreat, Medical, Human Pathogen, Fungal Genome Initiative (FGI) 5501 17761 001989_GCAT 0 ABBC00000000 Draft 3x 27649 0 0 Sanger USA Valley fever, Coccidioidomycosis Soil Pathogen Eukaryota Ascomycota Eurotiomycetes Onygenales Coccidioides Coccidioides posadasii EUKARYAL Coccidioides posadasii RMSCC 3700 RMSCC 3700 Coccidioides posadasii RMSCC 3700 Gi01216 Genome incomplete Public Broad Institute NIH-NIAID Birren B bwb@broad.mit.edu Biothreat, Medical, Human Pathogen, Fungal Genome Initiative (FGI) 469471 17781 001990_GCAT 0 ABFN01000000 Draft 3.6x 0 0 4 0 0 Sanger USA Valley fever, Coccidioidomycosis Soil Pathogen Eukaryota Ascomycota Eurotiomycetes Onygenales Coccidioides Coccidioides posadasii EUKARYAL Coccidioides posadasii Silveria Silveria Coccidioides posadasii str. Silveira Gi01900 Genome incomplete Public Broad Institute NIH-NIAID Birren B bwb@broad.mit.edu Biothreat, Medical, Human Pathogen, Fungal Genome Initiative (FGI) 443226 17787 002533_GCAT 0 ABAI01000000 Draft 5.2x 26826 0 4 0 46.8 Sanger USA Valley fever, Coccidioidomycosis Soil Pathogen Eukaryota Ascomycota Eurotiomycetes Onygenales Coccidioides Coccidioides posadasii EUKARYAL Coccidioides posadasii RMSCC 3488 RMSCC 3488 Coccidioides posadasii RMSCC 3488 Gi01217 Genome incomplete Public Broad Institute NIH-NIAID Birren B bwb@broad.mit.edu Biothreat, Medical, Human Pathogen, Fungal Genome Initiative (FGI) 454284 17783 001991_GCAT 0 ABBB01000000 Draft 8.5x 29000 0 4 0 0 Sanger USA Valley fever, Coccidioidomycosis Soil Pathogen Eukaryota Ascomycota Eurotiomycetes Onygenales Coccidioides Coccidioides posadasii EUKARYAL Coccidioides posadasii RMSCC 1038 RMSCC 1038 Coccidioides posadasii RMSCC 1038 Gi01218 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Biothreat, Medical, Human Pathogen, Fungal Genome Initiative (FGI) 490066 17785 001992_GCAT 0 Draft 3x 0 0 4 0 0 Sanger USA Valley fever, Coccidioidomycosis Soil Pathogen Eukaryota Ascomycota Eurotiomycetes Onygenales Coccidioides Coccidioides posadasii EUKARYAL Coccidioides posadasii RMSCC 1040 RMSCC 1040 Coccidioides posadasii RMSCC 1040 Gi01219 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Biothreat, Medical, Human Pathogen, Fungal Genome Initiative (FGI) 490067 17789 001993_GCAT 0 Draft 3.4x 0 0 4 0 0 Sanger USA Valley fever, Coccidioidomycosis Soil Pathogen Eukaryota Ascomycota Eurotiomycetes Onygenales Coccidioides Coccidioides posadasii EUKARYAL Coccidioides posadasii RMSCC 1037 RMSCC 1037 Coccidioides posadasii RMSCC 1037 Gi01220 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Biothreat, Medical, Human Pathogen, Fungal Genome Initiative (FGI) 490065 17791 001994_GCAT 0 Draft 3.4x 0 0 4 0 0 Sanger USA Valley fever, Coccidioidomycosis Soil Pathogen Eukaryota Ascomycota Eurotiomycetes Onygenales Coccidioides Coccidioides posadasii EUKARYAL Coccidioides posadasii CPA 0001 CPA 0001 Coccidioides posadasii CPA 0001 Gi01777 Genome incomplete Public Broad Institute NIH-NIAID Birren B bwb@broad.mit.edu Fungal Genome Initiative (FGI) 469472 17793 001995_GCAT 0 ABFO01000000 Draft 3.1x 0 0 4 0 0 Sanger USA Soil Eukaryota Ascomycota Eurotiomycetes Onygenales Coccidioides Coccidioides posadasii EUKARYAL Coccidioides posadasii CPA 0020 CPA 0020 Coccidioides posadasii CPA 0020 Gi01778 Genome incomplete Public Broad Institute NIH-NIAID Birren B bwb@broad.mit.edu Fungal Genome Initiative (FGI) 490068 17795 001996_GCAT 0 Draft 3.4x 0 0 4 0 0 Sanger USA Soil Eukaryota Ascomycota Eurotiomycetes Onygenales Coccidioides Coccidioides posadasii EUKARYAL Coccidioides posadasii CPA 0066 CPA 0066 Coccidioides posadasii CPA 0066 Gi01779 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Fungal Genome Initiative (FGI) 490069 17797 001997_GCAT 0 Draft 3x 0 0 4 0 0 Sanger USA Soil Eukaryota Ascomycota Eurotiomycetes Onygenales Coccidioides Coccidioides posadasii EUKARYAL Coccidioides posadasii RMSCC 2133 RMSCC 2133 Coccidioides posadasii RMSCC 2133 Gi01222 Genome incomplete Public Broad Institute NIH-NIAID Birren B bwb@broad.mit.edu Biothreat, Medical, Human Pathogen, Fungal Genome Initiative (FGI) 469470 17763 001999_GCAT 0 ABFM01000000 Draft 6.7x 0 0 4 0 0 Sanger USA Valley fever, Coccidioidomycosis Soil Pathogen Eukaryota Ascomycota Dothideomycetes Pleosporales Pleosporaceae Cochliobolus EUKARYAL Cochliobolus heterostrophus C4 C4 Gi00779 Genome incomplete Proprietary Syngenta AG Plant Pathogen, Agricultural 5016 002000_GCAT 0 0 0 0 USA Leaf blight Pathogen Eukaryota Ascomycota Sordariomycetes Diaporthales Cryphonectriaceae Cryphonectria EUKARYAL Cryphonectria parasitica EP155 EP155 Chestnut blight fungus Gi01579 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Plant Pathogen, Agricultural 5116 002001_GCAT 0 0 0 0 USA Chestnut blight Pathogen Eukaryota Basidiomycota Agaricomycetes Agaricales Psathyrellaceae Coprinopsis Coprinopsis cinerea EUKARYAL Coprinus cinereus okayama7#130 okayama7#130 Coprinopsis cinerea okayama7#130 Gi01113 Genome incomplete Public Broad Institute NSF, NIH-NHGRI Broad Institute annotation-info@genome.wi.mit.edu Fungal Genome Initiative (FGI), Evolutionary 240176 1447 002002_GCAT 0 AACS00000000 Draft 10x 37500 13544 13 0 0 Sanger USA None Non-Pathogen, Multicellular Eukaryota Basidiomycota Agaricomycetes Agaricales Tricholomataceae Moniliophthora EUKARYAL Moniliophthora perniciosa CPO2 (FA553) CPO2 (FA553) Moniliophthora perniciosa FA553 Gi00175 Genome incomplete Public Univ of Campinas SEAGRI Goncalo AGP goncalo@unicamp.br Plant Pathogen, Agricultural 153609 28951 002003_GCAT 0 ABRE00000000 39000 0 0 Brazil Witches' Broom Pathogen Eukaryota Basidiomycota Tremellomycetes Tremellales Tremellaceae Filobasidiella Filobasidiella neoformans EUKARYAL Cryptococcus neoformans var. grubii serotypeA H99 serotypeA H99 A Cryptococcus neoformans var. grubii H99 Gi00180 Genome incomplete Public Duke Univ, Broad Institute NIH-NHGRI Broad Institute annotation-info@genome.wi.mit.edu Fungal Genome Initiative (FGI), Medical, Human Pathogen 235443 411 002004_GCAT 0 AACO02000000 Draft 11x 0 0 14 0 0 Sanger USA Cryptococcosis Soil Pathogen, Heterothallic, Bipolar Eukaryota Basidiomycota Tremellomycetes Tremellales Tremellaceae Filobasidiella Filobasidiella bacillispora EUKARYAL Cryptococcus neoformans gattii R265 serotypeB R265 serotypeB Cryptococcus bacillisporus R265 Gi00179 Genome incomplete Public Broad Institute NIH-NHGRI Fungal Genome Initiative (FGI), Medical, Human Pathogen 294750 13691 002005_GCAT 0 AAFP00000000 Draft 6x 20000 0 14 0 0 Sanger USA Cryptococcosis Soil Pathogen, Heterothallic, Bipolar Eukaryota Basidiomycota Tremellomycetes Tremellales Tremellaceae Filobasidiella Filobasidiella bacillispora EUKARYAL Cryptococcus neoformans gattii WM276 (serotype B) WM276 (serotype B) Cryptococcus bacillisporus WM276 Gi01114 Genome incomplete Public Univ of British Columbia Genome Canada Animal Pathogen, Medical, Human Pathogen 367775 13692 002006_GCAT 0 6x 20000 0 14 0 0 Sanger Canada Meningoencephalitis, Cryptococcosis Soil Pathogen, Heterothallic, Bipolar Eukaryota Basidiomycota Tremellomycetes Tremellales Tremellaceae Filobasidiella Filobasidiella neoformans EUKARYAL Cryptococcus neoformans grubii H99 H99 A Cryptococcus neoformans var. grubii H99 Ge00059 EST incomplete Public Univ of Oklahoma, Duke Univ Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Medical, Human Pathogen 235443 15614 002007_GCAT 0 20000 0 14 0 0 USA Cryptococcosis Soil Pathogen, Bipolar, Heterothallic Eukaryota Basidiomycota Tremellomycetes Tremellales Tremellaceae Filobasidiella Filobasidiella neoformans EUKARYAL Cryptococcus neoformans grubii 184A 184A Cryptococcus neoformans var. grubii 184A Ge00239 EST incomplete Public Univ of Oklahoma Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Medical, Human Pathogen 178876 15616 002841_GCAT 0 2525 0 0 USA Cryptococcosis Soil Pathogen, Heterothallic, Bipolar Eukaryota Basidiomycota Tremellomycetes Tremellales Tremellaceae Filobasidiella Filobasidiella neoformans EUKARYAL Cryptococcus neoformans neoformans B-3501A B-3501A Cryptococcus neoformans var. neoformans B-3501 Ge00240 EST incomplete Public Univ of Oklahoma Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Medical, Human Pathogen 283643 15615 002842_GCAT 0 12000 0 0 USA Cryptococcosis Soil Pathogen, Heterothallic, Bipolar Eukaryota Basidiomycota Tremellomycetes Tremellales Tremellaceae Filobasidiella Filobasidiella neoformans EUKARYAL Cryptococcus neoformans B-3501A B-3501A D Cryptococcus neoformans var. neoformans B-3501A Gi00177 Genome incomplete Public Univ of Oklahoma, Stanford Univ, Nagasaki Univ, Univ of British Columbia NIH-NIAID, NSERC Hyman R hyman@sequence.stanford.edu CNB Medical, Human Pathogen 283643 12386 002008_GCAT 640281005 NZ_AAEY00000000 Draft Level 2: High-Quality Draft 18519 6609 14 0 0 Sanger International Cryptococcosis Soil Pathogen, Bipolar, Heterothallic Eukaryota Ascomycota Sordariomycetes Hypocreales Clavicipitaceae Epichloe Epichloe festucae EUKARYAL Epichloe festucae Gi01241 Genome incomplete Public Univ of Kentucky NSF Schardl C http://www.ca.uky.edu/agcollege/plantpathology/schardl/schardl.htm Agricultural 35717 002009_GCAT 0 Complete 24x 30000 0 0 Sanger, 454 USA Grass plants None Plant symbiont Symbiont Eukaryota Ascomycota Sordariomycetes Hypocreales Nectriaceae Gibberella Gibberella moniliformis EUKARYAL Fusarium verticillioides 7600 7600 Gibberella moniliformis 7600 FRC M3125, NRRL 20956 Gi01066 Genome incomplete Public Syngenta, Broad Institute Webmaster annotation-info@genome.wi.mit.edu Agricultural, Plant Pathogen, Fungal Genome Initiative (FGI) 334819 15553 002011_GCAT 0 AAIM02000000 Draft 8x 46000 0 12 0 0 Sanger USA Kernel, Ear rot Pathogen, Fumonisin producer Eukaryota Ascomycota Sordariomycetes Hypocreales Nectriaceae Gibberella EUKARYAL Fusarium verticillioides Gibberella moniliformis Ge00244 Genome incomplete Public J. Craig Venter Institute, USDA/ARS Brown DW browndw@ncaur.usda.gov Plant Pathogen, Agricultural 117187 18359 002845_GCAT 0 Complete 87000 0 0 USA Kernel, Ear rot Pathogen Eukaryota Ascomycota Sordariomycetes Hypocreales Nectriaceae Gibberella EUKARYAL Fusarium graminearum Gi00262 Genome incomplete Public Ceral Disease Laboratory USDA, NSF Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Plant Pathogen, Agricultural 5518 002012_GCAT 0 36000 0 4 0 0 USA Head blight Pathogen Eukaryota Ascomycota Sordariomycetes Hypocreales Nectriaceae Gibberella EUKARYAL Fusarium graminearum Gi00780 Genome incomplete Proprietary Syngenta AG Plant Pathogen, Agricultural 5518 002013_GCAT 0 36000 0 4 0 0 USA Head blight Pathogen Eukaryota Ascomycota Sordariomycetes Hypocreales Nectriaceae Gibberella EUKARYAL Fusarium proliferatum Gi00261 Genome incomplete Proprietary Greenomics Greenomics greenomics@plant.wag-ur.nl Plant Pathogen, Agricultural 42674 002014_GCAT 0 0 0 0 Netherlands Host Pathogen Eukaryota Ascomycota Sordariomycetes Hypocreales Fusarium Fusarium sporotrichioides EUKARYAL Fusarium sporotrichioides Fusarium sporotrichioides Ge00060 EST incomplete Public Univ of Oklahoma Roe B http://cheminfo.chem.ou.edu/faculty/bar.html Agricultural, Plant Pathogen, Medical 5514 9527 002015_GCAT 0 0 0 0 USA Filament-shaped Food poisoning Trichothecenes producer, Toxin producer Eukaryota Basidiomycota Agaricomycetes Polyporales Ganodermataceae Ganoderma Ganoderma lucidum EUKARYAL Ganoderma lucidum Gi00268 Genome incomplete Public Veteran General Hospital-Taipei, Yang-Ming Univ, Taiwan VGH-Taipei Chang Y-C d80106@mailsrv3.ym.edu.tw Pharmaceutical, Medical 5315 002016_GCAT 0 0 0 0 Taiwan None Anti-inflammatory activity Eukaryota Glomeromycota Glomeromycetes Glomerales Glomeraceae Glomus Glomus intraradices EUKARYAL Glomus intraradices Gi00275 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 4876 002017_GCAT 0 16000 0 0 USA Populus trichocarpa None Host, Plant root, Soil Symbiont, Endomycorrhizal Eukaryota Basidiomycota Tremellomycetes Tremellales Tremellaceae Tremella Tremella mesenterica EUKARYAL Tremella mesenterica Gi01960 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 5217 002587_GCAT 0 0 0 0 USA None Eukaryota Ascomycota Eurotiomycetes Onygenales Ajellomycetaceae Ajellomyces Ajellomyces capsulatus EUKARYAL Ajellomyces (Histoplasma) capsulatus WU24 (NAmI) WU24 (NAmI) Ajellomyces capsulatus NAm1 Gi00980 Genome incomplete Public Broad Institute NIH-NHGRI Fungal Genome Initiative (FGI), Medical, Human Pathogen 339724 12654 002018_GCAT 0 4x 0 0 7 0 0 Sanger USA Histoplasmosis Host, Soil Pathogen Eukaryota Ascomycota Sordariomycetes Hypocreales Fusarium Fusarium oxysporum EUKARYAL Fusarium oxysporum lycopersici FGSC 4286 FGSC 4286 Fusarium oxysporum f. sp. lycopersici 4286 FGSC 4286 NRRL 34936 Gi01780 Genome incomplete Public Broad Institute NIH-NHGRI Agricultural, Fungal Genome Initiative (FGI), Plant Pathogen, Medical, Human Pathogen 426428 18813 002019_GCAT 0 AAXH00000000 Draft 6.8x 0 17000 0 USA Infected tomato plant Infected tomato plant Vascular wilts Host Pathogen Eukaryota Ascomycota Eurotiomycetes Onygenales Ajellomycetaceae Ajellomyces Ajellomyces capsulatus EUKARYAL Ajellomyces (Histoplasma) capsulatum G217B G217B NAm1 Ajellomyces capsulatus G217B Gi00299 Genome incomplete Public UCSF, Washington Univ NIH-NIAID Medical, Human Pathogen 447094 12653 002020_GCAT 0 AAJI00000000 8x 24000 0 7 0 0 Sanger USA Histoplasmosis Soil, Host Pathogen Eukaryota Ascomycota Eurotiomycetes Onygenales Ajellomycetaceae Ajellomyces Ajellomyces capsulatus EUKARYAL Ajellomyces (Histoplasma) capsulatum G186AR G186AR Ajellomyces capsulatus G186AR Gi01094 Genome incomplete Public UCSF, Washington Univ NIH-NIAID WashU http://genome.wustl.edu/info/contact_info.cgi Medical, Human Pathogen 447093 12635 002021_GCAT 0 ABBS01000000 Draft 6x 24000 0 7 0 0 Sanger USA Histoplasmosis Soil, Host Pathogen Eukaryota Ascomycota Eurotiomycetes Onygenales Ajellomycetaceae Ajellomyces Ajellomyces capsulatus EUKARYAL Ajellomyces capsulatum H88 H88 Ajellomyces capsulatus H88 Gi01781 Genome incomplete Public Broad Institute NIH-NIAID Fungal Genome Initiative (FGI) 544711 29163 002022_GCAT 0 8x 0 0 0 USA Soil Eukaryota Ascomycota Eurotiomycetes Onygenales Ajellomycetaceae Ajellomyces Ajellomyces capsulatus EUKARYAL Ajellomyces capsulatum H143 H143 Ajellomyces capsulatus H143 Gi01782 Genome incomplete Public Broad Institute NIH-NIAID Fungal Genome Initiative (FGI) 544712 29161 002023_GCAT 0 4x 0 0 0 USA Soil Eukaryota Ascomycota Eurotiomycetes Onygenales Lacazia EUKARYAL Lacazia loboi EDM7 EDM7 Lacazia loboi EDM7 Gi01783 Genome incomplete Public Broad Institute NIH-NIAID Dolphin Pathogen, Medical, Human Pathogen, Fungal Genome Initiative (FGI) 121752 28831 002024_GCAT 0 8x 0 0 0 USA Uncultivated Uncultivated Lacaziosis Pathogen Eukaryota Ascomycota Eurotiomycetes Onygenales Paracoccidioides Paracoccidioides brasiliensis EUKARYAL Paracoccidioides brasiliensis Pb01 Pb01 Paracoccidioides brasiliensis Pb01 Gi01784 Genome incomplete Public Broad Institute NIH-NIAID Fungal Genome Initiative (FGI) 502779 28731 002025_GCAT 0 ABKH01000000 Draft 8x 30000 0 0 USA Paracoccidioidomycosis Pathogen Eukaryota Ascomycota Eurotiomycetes Onygenales Paracoccidioides Paracoccidioides brasiliensis EUKARYAL Paracoccidioides brasiliensis Pb03 Pb03 Paracoccidioides brasiliensis Pb03 Gi01785 Genome incomplete Public Broad Institute NIH-NIAID Fungal Genome Initiative (FGI) 482561 27779 002026_GCAT 0 ABHV00000000 Draft 0 0 0 USA Eukaryota Ascomycota Eurotiomycetes Onygenales Paracoccidioides Paracoccidioides brasiliensis EUKARYAL Paracoccidioides brasiliensis Pb18 Pb18 Gi01786 Genome incomplete Public Broad Institute NIH-NIAID Fungal Genome Initiative (FGI) 502780 002027_GCAT 0 ABKI00000000 Draft 9.8x 30000 0 0 USA Paracoccidioidomycosis Pathogen Eukaryota Ascomycota Eurotiomycetes Onygenales Ajellomycetaceae Ajellomyces Ajellomyces capsulatus EUKARYAL Ajellomyces dermatitidis ATCC 26199 ATCC 26199 Ajellomyces dermatitidis ATCC 26199 ATCC 26199 Gi01095 Genome incomplete Public Washington Univ NIH-NIAID Medical 544711 12672 002028_GCAT 0 3x 28000 0 0 Sanger USA Blastomycosis Host, Soil Pathogen Eukaryota Ascomycota Eurotiomycetes Onygenales Ajellomycetaceae Ajellomyces Ajellomyces dermatitidis EUKARYAL Ajellomyces dermatitidis ER-3 ER-3 Ajellomyces dermatitidis ER-3 Gi01787 Genome incomplete Public Broad Institute NIH-NIAID Fungal Genome Initiative (FGI) 559297 29171 002029_GCAT 0 8x 28000 0 0 USA Eukaryota Ascomycota Eurotiomycetes Onygenales Ajellomycetaceae Ajellomyces Ajellomyces dermatitidis EUKARYAL Ajellomyces dermatitidis SLH#14081 SLH#14081 Ajellomyces dermatitidis SLH14081 Gi01788 Genome incomplete Public Broad Institute NIH-NIAID Fungal Genome Initiative (FGI) 559298 29173 002030_GCAT 0 8x 28000 0 0 USA Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Kluyveromyces Kluyveromyces marxianus EUKARYAL Kluyveromyces marxianus var. marxianus CBS 712 CBS 712 Kluyveromyces marxianus CBS 712 Gi01910 Genome-Regions incomplete Public Univ Claude Bernard, Genoscope, Institut Pasteur BRG Food industry, Biotechnological 374272 12498 002031_GCAT 0 0.2x 14000 0 10 0 0 Sanger France None Food Homothalic Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Lachancea Lachancea thermotolerans EUKARYAL Kluyveromyces thermotolerans CBS 6340 CBS 6340 Kluyveromyces thermotolerans CBS 6340 Gc01047 Gi01911 Genome Complete and Published Public Univ Claude Bernard, Genoscope, Institut Pasteur BRG Souciet JL jean-luc.souciet@gem.u-strasbg.fr 2009-06-12 Genome Research Epub Biotechnological, Food industry, Fermentation 559295 12499 002032_GCAT 0 Complete Level 6: Finished Arachne 12.3x GeneMark 10392 5094 7 0 47.3 Sanger France None Eukaryota Basidiomycota Agaricomycetes Agaricales Amanitaceae Amanita EUKARYAL Amanita bisporigera Death angel Gi01374 Genome incomplete Public Michigan State Univ Walton JD http://www.prl.msu.edu/walton.shtml Medical, Agricultural 87325 002034_GCAT 0 0 0 0 USA Forest trees Food poisoning Host Symbiont, Poisoning Eukaryota Basidiomycota Agaricomycetes Agaricales Cortinariaceae Hebeloma Hebeloma cylindrosporum EUKARYAL Hebeloma cylindrosporum Ge00206 EST incomplete Public INRA Martin F fmartin@nancy.inra.fr Agricultural 76867 002035_GCAT 0 0 0 0 France Pinus pinaster None Host Symbiont Eukaryota Basidiomycota Agaricomycetes Russulales Bondarzewiaceae Heterobasidion Heterobasidion annosum EUKARYAL Heterobasidion annosum TC 32-1 TC 32-1 Gi01578 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Plant Pathogen, Agricultural 13563 002036_GCAT 0 0 0 0 USA Pathogen, Necrotrophic Eukaryota Basidiomycota Agaricomycetes Agaricales Tricholomataceae Laccaria Laccaria bicolor EUKARYAL Laccaria bicolor S238N S238N Ge00061 EST incomplete Public INRA Martin F fmartin@nancy.inra.fr Agricultural 29883 002037_GCAT 0 0 0 0 France Forest trees None Host Symbiont Eukaryota Basidiomycota Agaricomycetes Agaricales Tricholomataceae Laccaria Laccaria bicolor EUKARYAL Laccaria bicolor S238N-H82 S238N-H82 Laccaria bicolor S238N-H82 Gc00714 Gi00308 Genome Complete and Published Public DOE Joint Genome Institute DOE Martin F fmartin@nancy.inra.fr 2007-11-29 Nature 452, 88-92 Agricultural 486041 19043 002038_GCAT 0 ABFE00000000 Complete Level 2: High-Quality Draft 9.9x 58683 20000 47 USA Forest trees None Host, Ectomycorrhizal Symbiont Eukaryota Ascomycota Dothideomycetes Pleosporales Leptosphaeriaceae Leptosphaeria EUKARYAL Leptosphaeria maculans Gi00326 Genome incomplete Public Genoscope Plant Pathogen, Agricultural 5022 002039_GCAT 0 0 0 0 France Blackleg Host Pathogen, Parasite Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Lodderomyces Lodderomyces elongisporus EUKARYAL Lodderomyces elongisporus NRRL YB-4239 NRRL YB-4239 Lodderomyces elongisporus NRRL YB-4239 Gi00335 Genome incomplete Public Broad Institute NIH-NHGRI Fungal Genome Initiative (FGI) 379508 12899 002040_GCAT 0 NZ_AAPO00000000 Draft 8.7x 15460 0 36.9 Sanger USA None Non-Pathogen Eukaryota Ascomycota Sordariomycetes Magnaporthaceae Magnaporthe EUKARYAL Magnaporthe grisea Ge00062 EST incomplete Public Texas A&M Univ NSF TIGR tgi@tigr.org Plant Pathogen, Agricultural 148305 002042_GCAT 0 0 0 0 USA Rice blast Pathogen Eukaryota Ascomycota Dothideomycetes Capnodiales Mycosphaerellaceae Mycosphaerella EUKARYAL Mycosphaerella graminicola Gi00394 Genome incomplete Public Greenomics Greenomics greenomics@plant.wag-ur.nl Plant Pathogen, Agricultural 54734 002043_GCAT 0 0 0 0 United Kingdom Septoria leaf blotch Pathogen Eukaryota Ascomycota Dothideomycetes Capnodiales Mycosphaerellaceae Mycosphaerella EUKARYAL Mycosphaerella graminicola Ge00209 EST incomplete Public Syngenta Plant Pathogen, Agricultural 54734 002044_GCAT 0 0 0 0 USA Septoria leaf blotch Pathogen Eukaryota Ascomycota Dothideomycetes Capnodiales Mycosphaerellaceae Mycosphaerella Mycosphaerella graminicola EUKARYAL Mycosphaerella graminicola. IPO323 IPO323 Gi00795 Genome incomplete Public USDA-ARS, DOE Joint Genome Institute, Purdue Univ DOE Plant Pathogen, Agricultural 336722 002045_GCAT 0 8.9x 0 0 0 USA Septoria leaf blotch Pathogen Eukaryota Ascomycota Dothideomycetes Capnodiales Mycosphaerellaceae Mycosphaerella Mycosphaerella fijiensis EUKARYAL Mycosphaerella fijiensis CIRAD86 CIRAD86 Gi00796 Genome incomplete Public USDA-ARS, DOE Joint Genome Institute, Purdue Univ DOE Bruce D microbes@cuba.jgi-psf.org Agricultural, Plant Pathogen, Banana Pathogen 383855 002046_GCAT 0 7.1x 68000 0 0 USA Black Sigatoka Pathogen Eukaryota Ascomycota Sordariomycetes Hypocreales Nectriaceae Nectria Nectria haematococca EUKARYAL Nectria haematococca MPVI MPVI isolate 77-13-4 Nectria haematococca mpVI Gc01102 Gi00981 Genome Complete and Published Public DOE Joint Genome Institute DOE VanEtten HD vanetten@ag.arizona.edu 2009-08-28 PLoS Genetics 5(8):e1000618 Bioremediation, Environmental 70791 16586 002047_GCAT 0 Complete Phred/Phrap/Consed 8.2x FGENESH, Genewise 51149 15707 17 0 Sanger USA None Pesticide degrader, Lignin degrader, Plastic degrader Eukaryota Ascomycota Sordariomycetes Sordariales Sordariaceae Neurospora Neurospora crassa EUKARYAL Neurospora crassa Ge00063 EST incomplete Public Univ of New Mexico 5141 002049_GCAT 0 43000 0 7 0 54 USA Filament-shaped None Eukaryota Ascomycota Sordariomycetes Sordariales Sordariaceae Neurospora Neurospora discreta EUKARYAL Neurospora discreta FGSC 8579 matA PS 4B FGSC 8579 matA PS 4B Gi01601 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 29879 002050_GCAT 0 0 0 0 USA None Eukaryota Ascomycota Sordariomycetes Sordariales Sordariaceae Neurospora EUKARYAL Neurospora tetrasperma FGSC 2508 matA FGSC 2508 matA Gi01602 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 40127 002051_GCAT 0 0 0 0 USA None Eukaryota Ascomycota Sordariomycetes Sordariales Sordariaceae Neurospora Neurospora discreta EUKARYAL Neurospora discreta FGSC 2509 mata FGSC 2509 mata Gi01603 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 29879 002052_GCAT 0 0 0 0 USA None Eukaryota Ascomycota Sordariomycetes Sordariales Sordariaceae Neurospora Neurospora crassa EUKARYAL Neurospora crassa 74-OR23-IVA 74-OR23-IVA Gi00404 Genome incomplete Public Heinrich-Heine Univ, Duesseldorf DFG Schulte U uschulte@hs-bremen.de 5141 002053_GCAT 0 43000 0 0 Germany Filament-shaped None Eukaryota Ascomycota Eurotiomycetes Onygenales Paracoccidioides EUKARYAL Paracoccidioides brasiliensis Pb01 ATCC-MYA-826 Pb01 ATCC-MYA-826 Gi00430 Genome incomplete Public Federal Univ of Goias, Univ of Brasil CNPq, CT BRASIL Medical, Human Pathogen 121759 002054_GCAT 0 30000 0 0 Brazil Intestinal tract Paracoccidioidomycosis Soil, Intestinal microflora Pathogen Eukaryota Basidiomycota Agaricomycetes Boletales Paxillaceae Paxillus Paxillus involutus EUKARYAL Paxillus involutus Ge00064 EST incomplete Public Lund Univ Medical, Agricultural 71150 002055_GCAT 0 0 0 0 Sweden Food poisoning Poisoning Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Penicillium EUKARYAL Penicillium chrysogenum Gi00441 Genome incomplete Public Beijing Genomics Institute Antibiotic production, Pharmaceutical, Medical, Biotechnological 5076 002056_GCAT 0 0 0 0 China None Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Penicillium Penicillium marneffei EUKARYAL Penicillium marneffei ATCC 18224 ATCC 18224 Penicillium marneffei ATCC 18224 Gi01284 Genome incomplete Public Univ of Melbourne, J. Craig Venter Institute NIH-NIAID Andrianopoulos A http://www.hhmi.org/research/scholars/andrianopoulos_bio.html Medical, Human Pathogen 441960 19563 002057_GCAT 0 ABAR00000000 Draft 0 0 0 Sanger USA Viscera of a bamboo rat Viscera of a bamboo rat Penicilliosis Soil Pathogen Eukaryota Basidiomycota Pucciniales Phakopsoraceae Phakopsora Phakopsora meibomiae EUKARYAL Phakopsora meibomiae Phakopsora meibomiae Gi00581 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Plant Pathogen, Agricultural 169999 12905 002058_GCAT 0 8x 0 0 0 Sanger USA Soybean rust Pathogen Eukaryota Basidiomycota Pucciniales Phakopsoraceae Phakopsora Phakopsora pachyrhizi EUKARYAL Phakopsora pachyrhizi HighCoT HighCoT Phakopsora pachyrhizi Gi00582 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Plant Pathogen, Agricultural 170000 12904 002059_GCAT 0 8x 50000 0 0 Sanger USA Soybean rust Pathogen Eukaryota Mucorales Mucoraceae Phycomyces Phycomyces blakesleeanus EUKARYAL Phycomyces blakesleeanus NRRL1555, UBC21 NRRL1555, UBC21 Gi01096 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 4837 002060_GCAT 0 Draft 7.5x 40000 0 50 Sanger USA Filament-shaped None Eukaryota Physariida Physarum Physarum polycephalum EUKARYAL Physarum polycephalum Slime mold Physarum polycephalum Gi00750 Genome incomplete Public Washington Univ NIH-NHGRI Clifton S sclifton@watson.wustl.edu 5791 12851 002061_GCAT 0 6x 0 0 0 Sanger USA Yellow None Eukaryota Physariida Physarum Physarum polycephalum EUKARYAL Physarum polycephalum Physarum polycephalum Ge00065 EST incomplete Public Montreal Univ Genome-Quebec, Genome Canada Gray MW mwgray@is.dal.ca 5791 12701 002062_GCAT 0 9700 0 0 Canada Yellow None Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Pichia EUKARYAL Pichia angusta Gi00459 Genome incomplete Public Univ of Campinas Protein production, Biotechnological 4905 002063_GCAT 0 9000 0 6 0 0 Brazil Thermotolerant None Soil Methylotroph Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Pichia EUKARYAL Pichia angusta RB11 RB11 Pichia angusta RB11 Gi00460 Genome incomplete Proprietary QIAGEN Rhein Biotech Ramezani-Rad M ramezani@uni-duesseldorf.de Protein production, Biotechnological 4905 12565 002064_GCAT 0 Draft Level 2: High-Quality Draft 8x 9000 5933 6 0 0 Sanger Germany odc1 derivative of strain CBS 4732 odc1 derivative of strain CBS 4732 Thermotolerant None Soil Methylotroph Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Pichia EUKARYAL Pichia angusta CBS4732 CBS4732 Pichia angusta CBS 4732 Gi01912 Genome-Regions incomplete Public Genoscope, Institut Pasteur BRG Blandin G gblandin@pasteur.fr Protein production, Biotechnological 4905 12500 002065_GCAT 0 0.5x 9000 0 6 0 0 Sanger France Thermotolerant None Soil Methylotroph Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Pichia EUKARYAL Pichia farinosa (sorbitophila) CBS 7064 CBS 7064 Pichia farinosa CBS 7064 Gi01913 Genome-Regions incomplete Public Genoscope, Institut Pasteur BRG Potier S potier@gem.u-strasbg.fr 4920 12501 002066_GCAT 0 AL419724, AL414896 Draft 0.4x 13900 0 7 0 0 Sanger France Halotolerant None Osmotolerant Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Pichia EUKARYAL Pichia pastoris Gi00457 Genome incomplete Public Keck Graduate Institute, Integrated Genomics Inc NIH Cregg J http://faculty.kgi.edu/cregg/ Biotechnological, Protein production, Fermentation 4922 002067_GCAT 0 0 0 0 USA None Methylotroph Eukaryota Neocallimastigomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Piromyces Piromyces sp. E2 EUKARYAL Piromyces sp. E2 E2 Gi01097 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Hydrogen production, Evolutionary, Energy production 73868 002069_GCAT 0 30000 0 0 USA Anaerobe None Motile Symbiont, Lacks mitochondria, Chytrid Eukaryota Basidiomycota Agaricomycetes Boletales Pisolithaceae Pisolithus Pisolithus microcarpus EUKARYAL Pisolithus microcarpus 441 441 Ge00066 EST incomplete Public INRA, DOE Joint Genome Institute Martin F fmartin@nancy.inra.fr Agricultural 178872 002070_GCAT 0 Awaiting DNA 0 0 0 USA None Ectomycorrhizal Eukaryota Ascomycota Pneumocystidomycetes Pneumocystidales Pneumocystidaceae Pneumocystis EUKARYAL Pneumocystis carinii Gi00461 Genome incomplete Public Sanger Institute, Univ of Oxford Berriman M mb4@sanger.ac.uk Medical, Human Pathogen 4754 002071_GCAT 0 7700 0 0 United Kingdom Pneumocystis Pathogen Eukaryota Ascomycota Pneumocystidomycetes Pneumocystidales Pneumocystidaceae Pneumocystis EUKARYAL Pneumocystis carinii carinii Pneumocystis carinii Gi00472 Genome incomplete Public Univ of Cincinnati NIH-NIAID Cushion MT http://ucimedweb.uc.edu/intmed/staff/Bios/facultydetails.cfm?ID=99 Medical, Human Pathogen 4754 125 002072_GCAT 0 7700 0 0 USA Pneumocystis Pathogen Eukaryota Ascomycota Pneumocystidomycetes Pneumocystidales Pneumocystidaceae Pneumocystis EUKARYAL Pneumocystis carinii f. sp. mus f. sp. mus Gi00471 Genome incomplete Public Broad Institute NIH-NHGRI Cushion MT http://ucimedweb.uc.edu/intmed/staff/Bios/facultydetails.cfm?ID=99 Fungal Genome Initiative (FGI), Medical, Human Pathogen 4754 002073_GCAT 0 7500 0 0 USA Pneumocystis Pathogen Eukaryota Basidiomycota Agaricomycetes Agaricales Pleurotaceae Pleurotus EUKARYAL Pleurotus ostreatus N001 PC9 N001 PC9 Oyster mushroom Gi01576 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 5322 002074_GCAT 0 0 0 0 USA None Fresh water Saprophyte, Lignin degrader Eukaryota Ascomycota Pneumocystidomycetes Pneumocystidales Pneumocystidaceae Pneumocystis EUKARYAL Pneumocystis jiroveci (carinii hominis) Pneumocystis jirovecii Gi00473 Genome incomplete Public Univ of Cincinnati, Broad Institute Cushion MT http://ucimedweb.uc.edu/intmed/staff/Bios/facultydetails.cfm?ID=99 Fungal Genome Initiative (FGI), Medical, Human Pathogen 42068 20529 002075_GCAT 0 10x 7500 0 0 Sanger USA Pneumocystis Pathogen Eukaryota Ascomycota Pneumocystidomycetes Pneumocystidales Pneumocystidaceae Pneumocystis EUKARYAL Pneumocystis murina Pneumocystis murina Gi02479 Genome incomplete Public Broad Institute Fungal Genome Initiative (FGI), Medical, Human Pathogen 263815 20533 003204_GCAT 0 10x 0 0 0 Sanger USA Pneumocystis Pathogen Eukaryota Ichthyosporea Ichthyophonida Sphaeroforma EUKARYAL Sphaeroforma arctica Sphaeroforma arctica Gi02480 Genome incomplete Public Broad Institute NIH-NHGRI Origins of Multicellularity Project (OMP) 72019 20463 003205_GCAT 0 0 0 0 USA Eukaryota Ascomycota Sordariomycetes Sordariales Lasiosphaeriaceae Podospora Podospora anserina EUKARYAL Podospora anserina S mat+ S mat+ Podospora anserina DSM 980 Gc00798 Gi00475 Genome Complete and Published Public Genoscope Silar P philippe.silar@igmors.u-psud.fr 2008-05-06 Genome Biol. 9, R77 Environmental 5145 12954 002076_GCAT 0 Complete Level 2: High-Quality Draft 10x 35500 10545 7 0 52 Sanger France Filament-shaped None Saprophyte Eukaryota Ascomycota Sordariomycetes Sordariales Lasiosphaeriaceae Podospora Podospora anserina EUKARYAL Podospora anserina Podospora anserina Gi00474 Genome incomplete Public Broad Institute NIH-NHGRI Fungal Genome Initiative (FGI), Environmental 5145 12689 002077_GCAT 0 34000 0 7 0 0 USA Filament-shaped None Saprophyte Eukaryota Basidiomycota Agaricomycetes Polyporales Coriolaceae Postia Postia placenta EUKARYAL Postia placenta MAD 698-R MAD 698-R Postia placenta Mad-698-R Gc00946 Gi01067 Genome Complete and Published Public DOE Joint Genome Institute DOE Cullen D dcullen@wisc.edu 2009-01-28 PNAS 106, 1954-9 Bioenergy 561896 19789 002078_GCAT 0 Complete Level 2: High-Quality Draft JAZZ 7.2x 33000 17173 0 Sanger USA USDA, Forest Mycology Center, Madison, WI None Cellulose degrader, Brown-rot Eukaryota Basidiomycota Pucciniales Pucciniaceae Puccinia Puccinia graminis EUKARYAL Puccinia graminis tritici CRL 75-36-700-3 CRL 75-36-700-3 Puccinia graminis f. sp. tritici CRL 75-36-700-3 Gi01690 Genome incomplete Public Univ of Minnesota, Broad Institute NSF Szabo L lszabo@umn.edu Agricultural, Plant Pathogen, Fungal Genome Initiative (FGI) 418459 18535 002079_GCAT 0 AAWC01000000 Draft 7.88x 67000 0 0 Sanger USA Stem rust Pathogen, Parasite Eukaryota Mucorales Mucoraceae Rhizopus Rhizopus oryzae EUKARYAL Rhizopus oryzae RA 99-880 RA 99-880 Rhizopus oryzae RA 99-880 Gi00506 Genome incomplete Public Broad Institute NIH-NHGRI Fungal Genome Initiative (FGI), Medical, Human Pathogen 246409 13066 002080_GCAT 0 AACW02000000 Draft 10x 40000 0 0 Sanger USA Mucormycosis Soil, Food Pathogen, Agroclavine producer Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces bayanus EUKARYAL Saccharomyces bayanus uvarum CLIB 533, CBS7001 CLIB 533, CBS7001 Saccharomyces uvarum CLIB 533 Gi01914 Genome-Regions complete Public Genoscope, CNRS BRG Durrens P pascal.durrens@ibgc.u-bordeaux2.fr Food industry, Biotechnological 4931 12477 002081_GCAT 0 AL402278, AL397139 Draft 0.4x 11540 0 16 0 0 Sanger France None Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces bayanus EUKARYAL Saccharomyces bayanus 623-6C 623-6C Saccharomyces bayanus 623-6C Gi00519 Genome complete Public Washington Univ Food industry, Biotechnological 226231 1443 002082_GCAT 0 AACG02000000 Draft 2.9x 11540 0 16 0 0 Sanger USA None Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces bayanus EUKARYAL Saccharomyces bayanus MCYC 623 MCYC 623 Saccharomyces bayanus MCYC 623 Gi00520 Genome complete Public Washington Univ Kellis M manoli@mit.edu Food industry, Biotechnological 226127 1441 002083_GCAT 0 AACA00000000 Draft Level 2: High-Quality Draft 6.4x 11540 0 16 0 0 Sanger USA None Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces castellii EUKARYAL Saccharomyces (Naumovia) castellii NRRL Y-12630 NRRL Y-12630 Saccharomyces castellii NRRL Y-12630 Gi00521 Genome complete Public Washington Univ Johnston M mj@genetics.wustl.edu 226301 1444 002084_GCAT 0 AACF00000000 Draft Level 2: High-Quality Draft 3.9x 11100 0 9 0 0 Sanger USA None Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae RM11-1A RM11-1A Saccharomyces cerevisiae RM11-1a Gi00522 Genome incomplete Public Broad Institute NIH-NHGRI Biotechnological, Fungal Genome Initiative (FGI), Food industry 285006 13674 002085_GCAT 0 AAEG01000000 Draft Level 2: High-Quality Draft 10x 12000 0 16 0 0 Sanger USA None Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae Kyokai no. 7 Kyokai no. 7 NBRC 101557 Gi01303 Genome incomplete Public NITE Fujita N fujita-nobuyuki@nite.go.jp Food industry, Biotechnological 4932 002086_GCAT 0 12000 0 16 0 0 Japan None Archaea Euryarchaeota Methanomicrobia methanogenic archaeon SANAE ARCHAEAL Euryachaeota sp. SANAE (Rice Cluster I) SANAE (Rice Cluster I) Gi01888 Genome incomplete Public NITE Imachi H imachi@vos.nagaokaut.ac.jp Food industry, Biotechnological 304371 002087_GCAT 111156 0 0 0 0 Japan Japanese rice paddy soil Japan Japanese rice paddy soil Mesophile gram- Free living None Methanogen Lithotroph Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae EC1118 EC1118 Gi01789 Genome incomplete Public Genoscope Barbe V vbarbe@genoscope.cns.fr 4932 002088_GCAT 0 13000 0 0 France None Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae YJM789 YJM789 Saccharomyces cerevisiae YJM789 Gi01285 Genome incomplete Public Stanford Univ Biotechnological, Medical, Food industry 307796 13304 002089_GCAT 643280124 AAFW01000000 Draft Level 2: High-Quality Draft 10x 12000 0 16 0 0 Sanger USA Lung of an AIDS patient Lung of an AIDS patient None Clinical isolate Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Kazachstania EUKARYAL Saccharomyces (Kazachstania) exiguus CBS 379 CBS 379 Kazachstania exigua CBS 379 Gi01915 Genome-Regions incomplete Public Genoscope, CNRS BRG Bon E ebon@grignon.inra.fr 34358 12495 002090_GCAT 0 0.2x 18000 0 16 0 0 Sanger France None Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Lachancea EUKARYAL Saccharomyces kluyveri CBS3082 CBS3082 Saccharomyces kluyveri NRRL Y-12651 ATCC 58438;CCRC 21498;DBVPG 6177;IFO 1685, CBS 3082 Gc01048 Gi01916 Genome Complete and Published Public Genoscope, CNRS BRG Souciet JL jean-luc.souciet@gem.u-strasbg.fr 2009-06-12 Genome Research Epub 4934 12483 002091_GCAT 0 Complete Level 6: Finished Arachne GeneMark 11345 5320 8 0 0 Sanger France Drosophila pinicola Drosophila pinicola Drosophila pinicola None Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Lachancea Lachancea kluyveri EUKARYAL Saccharomyces kluyveri NRRL Y-12651 NRRL Y-12651 Saccharomyces kluyveri NRRL Y-12651 Gi00523 Genome incomplete Public Washington Univ Johnston M mj@genetics.wustl.edu 226302 1445 002092_GCAT 0 AACE00000000 Draft 3.6x 12600 0 8 0 0 Sanger USA None Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces kudriavzevii EUKARYAL Saccharomyces kudriavzevii IFO 1802 IFO 1802 Saccharomyces kudriavzevii IFO 1802 Gi00524 Genome complete Public Washington Univ Johnston M mj@genetics.wustl.edu 226230 1442 002093_GCAT 0 AACI00000000 Draft 3.4x 1200 0 16 0 0 Sanger USA None Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces mikatae EUKARYAL Saccharomyces mikatae IFO 1815 IFO 1815 Saccharomyces mikatae IFO 1815 Gi02172 Genome complete Public Washington Univ 226126 9601 002833_GCAT 0 AACH01000000 Draft 2.8x 12120 0 16 0 0 Sanger USA None Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces mikatae EUKARYAL Saccharomyces mikatae IFO 1815 IFO 1815 Saccharomyces mikatae IFO 1815 Gi00525 Genome incomplete Public Broad Institute Kellis M manoli@mit.edu 226126 374 002094_GCAT 0 AABZ00000000 Draft Level 2: High-Quality Draft 5.9x 12120 0 16 0 0 Sanger USA None Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces paradoxus EUKARYAL Saccharomyces paradoxus NRRL Y-17217 NRRL Y-17217 Saccharomyces paradoxus NRRL Y-17217 Gi00526 Genome complete Public Broad Institute Kellis M manoli@mit.edu Biotechnological, Fungal Genome Initiative (FGI), Food industry 226125 1440 002095_GCAT 0 AABY00000000 Draft Level 2: High-Quality Draft 7.7x 11750 0 16 0 0 Sanger USA None Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces pastorianus (carlsbergensis) Ge00067 EST incomplete Public Carlsberg Research Center Brandt A http://www.crc.dk/yeast/yeasthome/staff/anders_brandt.htm 27292 002096_GCAT 0 0 0 0 Denmark Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces pastorianus Weihenstephan Weihenstephan Gi00527 Genome incomplete Public Kitasato Univ Hattori M hattori@genome.ls.kitasato-u.ac.jp 27292 002097_GCAT 0 Complete 26000 0 0 Japan Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces servazzii EUKARYAL Saccharomyces servazzii CBS 4311 CBS 4311 Saccharomyces servazzii CBS 4311 Gi01917 Genome-Regions complete Public Genoscope, CNRS BRG Casaregola S serge@grignon.inra.fr 27293 12496 002098_GCAT 0 0.2x 12300 0 12 0 0 Sanger France None Eukaryota Basidiomycota Agaricomycetes Agaricales Schizophyllaceae Schizophyllum Schizophyllum commune EUKARYAL Schizophyllum commune Gi00548 Genome incomplete Public Plant Research International, Wageningen Plant Pathogen, Human Pathogen, Agricultural 5334 002099_GCAT 0 37000 0 14 57 Netherlands White rot, Mycosis Pathogen Eukaryota Basidiomycota Agaricomycetes Agaricales Schizophyllaceae Schizophyllum Schizophyllum commune EUKARYAL Schizophyllum commune. Ge00068 EST incomplete Public Southeast Missouri State Univ SEMO agathman@biology.semo.edu Agricultural, Plant Pathogen, Human Pathogen 5334 002100_GCAT 0 0 0 0 USA White rot, Mycosis Pathogen Eukaryota Ascomycota Schizosaccharomycetes Schizosaccharomycetales Schizosaccharomycetaceae Schizosaccharomyces Schizosaccharomyces octosporus EUKARYAL Schizosaccharomyces octosporus yFS286 yFS286 Schizosaccharomyces octosporus yFS286 Gi00982 Genome incomplete Public Broad Institute NIH-NHGRI Fungal Genome Initiative (FGI) 483514 13639 002101_GCAT 0 Draft 11x 14000 4925 0 Sanger USA None Eukaryota Ascomycota Schizosaccharomycetes Schizosaccharomycetales Schizosaccharomycetaceae Schizosaccharomyces Schizosaccharomyces japonicus EUKARYAL Schizosaccharomyces japonicus yFS275 yFS275 Schizosaccharomyces japonicus yFS275 Gi00983 Genome incomplete Public Broad Institute, Univ of Massachusetts NIH-NHGRI Fungal Genome Initiative (FGI) 402676 13640 002102_GCAT 0 AATM01000000 Draft Level 2: High-Quality Draft 9x 14000 0 0 Sanger USA None Eukaryota Ascomycota Leotiomycetes Helotiales Sclerotiniaceae Sclerotinia Sclerotinia sclerotiorum EUKARYAL Sclerotinia sclerotiorum 1980 1980 Sclerotinia sclerotiorum 1980 ATCC18683 Gi01223 Genome incomplete Public Broad Institute USDA Agricultural, Fungal Genome Initiative (FGI), Plant Pathogen 325569 15530 002103_GCAT 0 AAGT01000000 Draft 8x 38000 0 0 Sanger USA White mold, Root rot Pathogen Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Talaromyces Talaromyces stipitatus EUKARYAL Talaromyces stipitatus ATCC 10500 ATCC 10500 ATCC 10500 Gi01286 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Medical 441959 002104_GCAT 0 ABAS00000000 Draft 8.1x 0 0 0 Sanger USA None Non-Pathogen Eukaryota Ascomycota Sordariomycetes Hypocreales Hypocreaceae Hypocrea Hypocrea jecorina EUKARYAL Trichoderma reesei QM6A QM6A Ge00069 EST incomplete Public North Carolina State Univ Mitchell T thomas_mitchell@ncsu.edu Biotechnological, Cellulase production 431241 002105_GCAT 0 33000 0 0 USA None Eukaryota Ascomycota Sordariomycetes Hypocreales Hypocreaceae Hypocrea Hypocrea jecorina EUKARYAL Trichoderma reesei QM6a QM6a Trichoderma reesei QM6a ATCC 56765 Gc00961 Gi00665 Genome Complete and Published Public Univ of Wisconsin, DOE Joint Genome Institute DOE Martinez D admar@unm.edu 2007-03-15 Nat Biotechnology 26, 553-60 Cellulase production, Biotechnological 431241 15571 002106_GCAT 0 AAIL01000000 Complete Level 2: High-Quality Draft 33000 0 0 USA None Eukaryota Ascomycota Sordariomycetes Hypocreales Hypocreaceae Hypocrea Hypocrea virens EUKARYAL Trichoderma virens Gv29-8 Gv29-8 Trichoderma virens Gv29-8 Gc00783 Gi01098 Genome Complete and Published Public Texas A&M Univ, DOE Joint Genome Institute DOE Martinez AD admar@unm.edu 2008-05-04 Nat Biotechnol. 26, 553-60 Energy production, Biofuels, Bioenergy 413071 19983 002107_GCAT 0 ABDF00000000 Complete 35000 9129 0 Sanger USA None Cellulose degrader, Biomass degrader, Cellulose degrader Eukaryota Basidiomycota Agaricomycetes Agaricales Tricholomataceae Tricholoma EUKARYAL Tricholoma matsutake Gi00824 Genome incomplete Public Dragon Genomics 40145 002108_GCAT 0 0 0 0 Japan Eukaryota Ascomycota Pezizomycetes Pezizales Tuberaceae Tuber EUKARYAL Tuber borchii Whitish truffle Ge00070 EST incomplete Public INRA Martin F fmartin@nancy.inra.fr 42251 002109_GCAT 0 0 0 0 France Eukaryota Ascomycota Pezizomycetes Pezizales Tuberaceae Tuber EUKARYAL Tuber melanosporum Perigord truffle Gi01790 Genome incomplete Public Genoscope 39416 002110_GCAT 0 0 0 0 France Eukaryota Ascomycota Eurotiomycetes Onygenales Onygenaceae Uncinocarpus Uncinocarpus reesii EUKARYAL Uncinocarpus reesii 1704 1704 Uncinocarpus reesii 1704 Gi00673 Genome incomplete Public Broad Institute NIH-NHGRI Fungal Genome Initiative (FGI) 336963 15634 002111_GCAT 0 AAIW01000000 Draft 5x 30000 0 0 Sanger USA None Non-Pathogen Eukaryota Basidiomycota Ustilaginomycetes Ustilaginales Ustilaginaceae Ustilago Ustilago maydis EUKARYAL Ustilago maydis FB1 FB1 Ustilago maydis FB1 Gi00676 Genome complete Proprietary Exelixis Inc, Broad Institute Plant Pathogen, Agricultural 5270 29385 002112_GCAT 0 5x 2000 0 23 0 0 USA Corn smut Pathogen Eukaryota Ascomycota Lecanoromycetes Teloschistaceae Xanthoria Xanthoria parietina EUKARYAL Xanthoria parietina Gi01099 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 107463 002113_GCAT 0 40000 0 0 USA Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Zygosaccharomyces Zygosaccharomyces rouxii EUKARYAL Zygosaccharomyces rouxii CBS732 CBS732 Zygosaccharomyces rouxii CBS 732 ATCC 2623;CCRC 21506;DBVPG 6187;IFO 1130, CBS 732 Gc01046 Gi01287 Genome Complete and Published Public Genoscope, CNRS BRG Souciet JL jean-luc.souciet@gem.u-strasbg.fr 2009-06-12 Genome Research Epub Food spoilage, Food industry, Biotechnological 559307 12502 002114_GCAT 0 Complete Level 6: Finished 11.1x 9764 4992 7 0 39.1 Sanger France Halotolerant Osmotolerant, Homothalic Eukaryota Peronosporales Peronosporaceae Hyaloperonospora EUKARYAL Peronospora (Hyaloperonospora) parasitica Ge00071 EST incomplete Public Virginia Polytechnic Institute NSF Tyler BM bmtyler@vt.edu 123356 002115_GCAT 0 0 0 0 USA Eukaryota Peronosporales Peronosporaceae Hyaloperonospora EUKARYAL Peronospora (Hyaloperonospora) parasitica Emoy2 Emoy2 Water Mold Hyaloperonospora parasitica strain Emoy2 Gi01375 Genome incomplete Public Washington Univ NSF WashU Agricultural, Plant Pathogen, Pathogen 559515 30969 002116_GCAT 0 ABWE01000000 Draft 9.5x 0 0 0 USA Eukaryota Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma EUKARYAL Ancylostoma caninum Ge00072 EST incomplete Public Washington Univ, North Carolina State Univ McCarter J mccarter@genetics.wustl.edu 29170 002117_GCAT 0 0 0 0 USA Eukaryota Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma EUKARYAL Ancylostoma caninum Ancylostoma caninum Gi02466 Genome incomplete Public Washington Univ, North Carolina State Univ 29170 20441 003188_GCAT 0 0 0 0 USA Diarrhea, Anemia Eukaryota Arthropoda Insecta Diptera Culicidae Anopheles Anopheles gambiae EUKARYAL Anopheles gambiae M M Anopheles gambiae M Gi02467 Genome incomplete Public Washington Univ 377271 20295 003189_GCAT 0 0 0 0 Sanger USA Eukaryota Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus EUKARYAL Necator americanus Necator americanus Gi02474 Genome incomplete Public Washington Univ 51031 20443 003198_GCAT 0 0 0 0 USA Eukaryota Arthropoda Merostomata Xiphosura Limulidae Limulus EUKARYAL Limulus polyphemus Atlantic horseshoe crab Limulus polyphemus Gi02473 Genome incomplete Public Washington Univ 6850 20489 003197_GCAT 0 6x 0 0 0 Sanger USA Eukaryota Nematoda Chromadorea Rhabditida Cooperiidae Cooperia Cooperia oncophora EUKARYAL Cooperia oncophora Cooperia oncophora Gi02469 Genome incomplete Public Washington Univ Cattle Pathogen, Medical 27828 20299 003192_GCAT 0 0 0 0 USA Pathogen, Parasitic Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila Drosophila mauritiana EUKARYAL Drosophila mauritiana Drosophila mauritiana Gi02470 Genome incomplete Public Washington Univ 7226 20289 003193_GCAT 0 0 0 0 454 USA Eukaryota Arthropoda Insecta Diptera Culicidae Anopheles Anopheles gambiae EUKARYAL Anopheles gambiae S S Anopheles gambiae S Gi02468 Genome incomplete Public J. Craig Venter Institute 377270 20301 003190_GCAT 0 0 0 0 Sanger USA Eukaryota Arthropoda Insecta Diptera Culicidae Anopheles EUKARYAL Anopheles gambiae S S Anopheles gambiae Ge00284 Genome complete Public Genoscope, Institut Pasteur 7165 13970 003191_GCAT 0 Complete 3700 0 0 Sanger France Eukaryota Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma ceylanicum EUKARYAL Ancylostoma ceylanicum Ancylostoma ceylanicum Ge00073 EST incomplete Public Univ of Colorado, Washington Univ McCarter J mccarter@genetics.wustl.edu 53326 12860 002118_GCAT 0 10651 0 0 USA Eukaryota Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma duodenale EUKARYAL Ancylostoma duodenale Ancylostoma duodenale Ge00074 EST incomplete Public Washington Univ NIH-NIAID McCarter J mccarter@genetics.wustl.edu 51022 12858 002119_GCAT 0 0 0 0 USA Eukaryota Nematoda Chromadorea Ascaridida Ascarididae Ascaris EUKARYAL Ascaris lumbicoides Ge00075 EST incomplete Public Washington Univ NIH-NIAID McCarter J mccarter@genetics.wustl.edu 6252 002120_GCAT 0 0 0 0 USA Eukaryota Nematoda Chromadorea Ascaridida Ascarididae Ascaris EUKARYAL Ascaris suum Ge00076 EST incomplete Public Sanger Institute, Univ of Edinburgh Beowulf Genomics Blaxter M http://helios.bto.ed.ac.uk/icapb/cgi-bin/CV_out.cgi?user=blaxter 6253 002121_GCAT 0 10000 0 0 United Kingdom Eukaryota Nematoda Chromadorea Spirurida Onchocercidae Brugia EUKARYAL Brugia malayi Brugia malayi Ge00077 EST incomplete Public Sanger Institute, Univ of Edinburgh Beowulf Genomics Blaxter M http://helios.bto.ed.ac.uk/icapb/cgi-bin/CV_out.cgi?user=blaxter 6279 12862 002122_GCAT 0 300000 0 0 United Kingdom Eukaryota Nematoda Chromadorea Spirurida Onchocercidae Brugia EUKARYAL Brugia malayi Gi02174 Genome-Regions incomplete Public Sanger Institute, Univ of Edinburgh Berriman M mb4@sanger.ac.uk 6279 159 002840_GCAT 0 0 0 6 0 0 USA Eukaryota Nematoda Chromadorea Rhabditida Heterorhabditidae Heterorhabditis Heterorhabditis bacteriophora EUKARYAL Heterorhabditis bacteriophora Heterorhabditis bacteriophora Gi01479 Genome incomplete Public Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth 37862 13976 002124_GCAT 0 0 0 0 USA Eukaryota Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei EUKARYAL Caenorhabditis remanei Caenorhabditis remanei Gi00116 Genome incomplete Public Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth 31234 12588 002125_GCAT 0 AAGD00000000 Draft 9x 0 0 0 Sanger USA Eukaryota Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis japonica EUKARYAL Caenorhabditis japonica Caenorhabditis japonica Gi00115 Genome incomplete Public Washington Univ NIH-NHGRI 281687 12591 002126_GCAT 0 9x 100000 0 0 Sanger USA Eukaryota Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis EUKARYAL Caenorhabditis brenneri CB5161, PB2801 CB5161, PB2801 Gi00117 Genome incomplete Public Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth 135651 002127_GCAT 0 ABEG00000000 Draft 9x 0 0 0 Sanger USA Eukaryota Nematoda Chromadorea Spirurida Onchocercidae Dirofilaria EUKARYAL Dirofilaria immitis canine heartworm nematode Ge00078 EST incomplete Public Washington Univ, North Carolina State Univ NIH-NIAID McCarter J mccarter@genetics.wustl.edu 6287 002128_GCAT 0 0 0 0 USA Eukaryota Nematoda Chromadorea Tylenchida Heteroderidae Globodera Globodera pallida EUKARYAL Globodera pallida Ge00079 EST incomplete Public Wageningen Univ, Scottish Crop Research Institute Smant G geert.smant@nema.dpw.wau.nl 36090 002129_GCAT 0 100000 0 0 International Eukaryota Nematoda Chromadorea Tylenchida Heteroderidae Globodera Globodera rostochiensis EUKARYAL Globodera rostochiensis Ge00080 EST incomplete Public Wageningen Univ, Washington Univ NSF Smant G geert.smant@nema.dpw.wau.nl 31243 002130_GCAT 0 0 0 0 International Eukaryota Nematoda Chromadorea Rhabditida Haemonchidae Haemonchus EUKARYAL Haemonchus contortus Gi01761 Genome incomplete Public Sanger Institute, Univ of Edinburgh Beowulf Genomics Blaxter M http://helios.bto.ed.ac.uk/icapb/cgi-bin/CV_out.cgi?user=blaxter 6289 002131_GCAT 0 5x 0 0 0 Sanger United Kingdom Eukaryota Nematoda Chromadorea Rhabditida Haemonchidae Haemonchus Haemonchus placei EUKARYAL Haemonchus placei Ge00270 EST complete Public Sanger Institute Beowulf Genomics Berriman M mb4@sanger.ac.uk 6290 002872_GCAT 0 7500 0 0 United Kingdom Eukaryota Nematoda Chromadorea Rhabditida Heligmonellidae Nippostrongylus Nippostrongylus brasiliensis EUKARYAL Nippostrongylus brasiliensis Gi02176 Genome complete Public Sanger Institute Beowulf Genomics Berriman M mb4@sanger.ac.uk 27835 002873_GCAT 0 0 0 0 United Kingdom Eukaryota Nematoda Chromadorea Rhabditida Heligmonellidae Nippostrongylus Nippostrongylus brasiliensis EUKARYAL Nippostrongylus brasiliensis Nippostrongylus brasiliensis Gi02475 Genome complete Public Washington Univ 27835 20447 003200_GCAT 0 0 0 0 USA Eukaryota Nematoda Chromadorea Rhabditida Heligmonellidae Nippostrongylus Nippostrongylus brasiliensis EUKARYAL Nippostrongylus brasiliensis Nippostrongylus brasiliensis Ge00286 EST complete Public Washington Univ 27835 20449 003199_GCAT 0 7004 0 0 USA Eukaryota Nematoda Chromadorea Ascaridida Ascarididae Ascaris EUKARYAL Ascaris lumbricoides Gi02177 Genome complete Public Sanger Institute Beowulf Genomics Berriman M mb4@sanger.ac.uk 6252 002874_GCAT 0 230000 0 0 United Kingdom Eukaryota Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma duodenale EUKARYAL Ancylostoma duodenale Gi02178 Genome complete Public Sanger Institute Beowulf Genomics Berriman M mb4@sanger.ac.uk 51022 002875_GCAT 0 0 0 0 United Kingdom Eukaryota Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides stercoralis EUKARYAL Strongyloides stercoralis Gi02179 Genome complete Public Sanger Institute Beowulf Genomics Berriman M mb4@sanger.ac.uk 6248 002876_GCAT 0 0 0 0 Sanger United Kingdom Eukaryota Nematoda Enoplea Trichocephalida Trichuridae Trichuris Trichuris trichiura EUKARYAL Trichuris trichiura Gi02180 Genome complete Public Sanger Institute Beowulf Genomics Berriman M mb4@sanger.ac.uk 36087 002877_GCAT 0 0 0 0 Sanger United Kingdom Eukaryota Nematoda Chromadorea Tylenchida Heteroderidae Heterodera EUKARYAL Heterodera glycines Ge00083 EST incomplete Public Washington Univ, North Carolina State Univ NIH-NIAID McCarter mccarter@genetics.wustl.edu 51029 002132_GCAT 0 92000 0 0 USA Eukaryota Nematoda Chromadorea Spirurida Onchocercidae Litomosoides Litomosoides sigmodontis EUKARYAL Litomosoides sigmodontis Ge00084 EST incomplete Public Edinburgh Univ Blaxter M http://helios.bto.ed.ac.uk/icapb/cgi-bin/CV_out.cgi?user=blaxter 42156 002133_GCAT 0 0 0 0 United Kingdom Eukaryota Nematoda Chromadorea Tylenchida Meloidogynidae Meloidogyne Meloidogyne arenaria EUKARYAL Meloidogyne arenaria Meloidogyne arenaria Ge00085 EST incomplete Public Washington Univ McCarter mccarter@genetics.wustl.edu 6304 12718 002134_GCAT 0 0 0 0 USA Eukaryota Nematoda Chromadorea Tylenchida Meloidogynidae Meloidogyne Meloidogyne artiellia EUKARYAL Meloidogyne artellia Meloidogyne artiellia Ge00086 EST incomplete Public Washington Univ, North Carolina State Univ McCarter mccarter@genetics.wustl.edu 42426 12728 002135_GCAT 0 0 0 0 USA Eukaryota Nematoda Chromadorea Tylenchida Meloidogynidae Meloidogyne Meloidogyne chitwoodi EUKARYAL Meloidogyne chitwoodi Meloidogyne chitwoodi Ge00087 EST incomplete Public Washington Univ, North Carolina State Univ McCarter mccarter@genetics.wustl.edu 59747 12732 002136_GCAT 0 0 0 0 USA Eukaryota Nematoda Chromadorea Tylenchida Meloidogynidae Meloidogyne Meloidogyne hapla EUKARYAL Meloidogyne hapla VW9 VW9 Meloidogyne hapla VW9 Gc00874 Gi00715 Genome Complete and Published Public DOE Joint Genome Institute, Washington Univ, North Carolina State Univ NSF McCarter mccarter@genetics.wustl.edu 2007-09-22 PNAS 105, 14802-7 6305 29083 002137_GCAT 0 ABLG00000000 Complete Level 2: High-Quality Draft Arachne 10.4x Glimmer, FgenesH 1523 54000 16676 16 0 27.4 Sanger USA VW9 eggs VW9 eggs Eukaryota Nematoda Chromadorea Tylenchida Meloidogynidae Meloidogyne EUKARYAL Meloidogyne incognita Ge00088 EST incomplete Public Wageningen Univ, Washington Univ McCarter mccarter@genetics.wustl.edu 6306 002138_GCAT 0 0 0 0 USA Eukaryota Nematoda Chromadorea Tylenchida Meloidogynidae Meloidogyne EUKARYAL Meloidogyne javanica Ge00089 EST incomplete Public Washington Univ, North Carolina State Univ McCarter mccarter@genetics.wustl.edu 6303 002139_GCAT 0 0 0 0 USA Eukaryota Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus EUKARYAL Necator americanus Ge00090 EST complete Public Sanger Institute, Univ of Edinburgh Beowulf Genomics Blaxter M http://helios.bto.ed.ac.uk/icapb/cgi-bin/CV_out.cgi?user=blaxter 51031 002140_GCAT 0 10000 0 0 United Kingdom Eukaryota Nematoda Chromadorea Spirurida Onchocercidae Onchocerca Onchocerca ochengi EUKARYAL Onchocerca ochengi Ge00091 EST incomplete Public Washington Univ Edna McConnell Clark Foundation Williams S genome@smith.edu 42157 002141_GCAT 0 0 0 0 USA Eukaryota Nematoda Chromadorea Spirurida Onchocercidae Onchocerca Onchocerca volvulus EUKARYAL Onchocerca volvulus Ge00092 EST incomplete Public Smith College Edna McConnell Clark Foundation Williams S genome@smith.edu 6282 002142_GCAT 0 0 0 0 USA Eukaryota Nematoda Chromadorea Rhabditida Haemonchidae Ostertagia Ostertagia ostertagi EUKARYAL Ostertagia ostertagi Ostertagia ostertagi Ge00093 EST incomplete Public Edinburgh Univ, Washington Univ NIH McCarter mccarter@genetics.wustl.edu 6317 20475 002143_GCAT 0 7006 0 0 International Eukaryota Nematoda Chromadorea Rhabditida Strongyloididae Parastrongyloides Parastrongyloides trichosuri EUKARYAL Parastrongyloides trichosuri Ge00094 EST incomplete Public AgResearch, Washington Univ NIH McCarter mccarter@genetics.wustl.edu 131310 002144_GCAT 0 0 0 0 International Eukaryota Nematoda Chromadorea Diplogasterida Neodiplogasteridae Pristionchus Pristionchus pacificus EUKARYAL Pristionchus pacificus PS312 PS312 Gc00999 Gi00756 Genome Complete and Published Public Max Planck Institute, Washington Univ NIH-NHGRI Sommer RJ ralf.sommer@tuebingen.mpg.de http://www.eb.tuebingen.mpg.de/departments/4-evolutionary-biology/department-4-evolutionary-biology 2009-01-07 Nature Genetics 40, 1193-8 54126 12644 002145_GCAT 0 ABKE00000000 Complete 8.92x 0 0 0 USA Pasadena, California USA Pasadena, California 34.145892 -118.132351 Eukaryota Nematoda Chromadorea Diplogasterida Neodiplogasteridae Pristionchus Pristionchus pacificus EUKARYAL Pristionchus pacificus. Ge00095 EST incomplete Public Max Planck Institute, Washington Univ Max Planck Society McCarter mccarter@genetics.wustl.edu 54126 12650 002146_GCAT 0 In progress 15446 0 0 International Eukaryota Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti EUKARYAL Strongyloides ratti Ge00096 EST incomplete Public Washington Univ, Univ of Bristol MRC, NIH McCarter mccarter@genetics.wustl.edu 34506 002147_GCAT 0 0 0 0 International Eukaryota Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides stercoralis EUKARYAL Strongyloides stercoralis Ge00097 EST incomplete Public Washington Univ NIH McCarter mccarter@genetics.wustl.edu 6248 002148_GCAT 0 0 0 0 USA Eukaryota Nematoda Chromadorea Rhabditida Haemonchidae Teladorsagia EUKARYAL Teladorsagia circumcincta Ge00098 EST incomplete Public Sanger Institute, Univ of Edinburgh Beowulf Genomics Blaxter M http://helios.bto.ed.ac.uk/icapb/cgi-bin/CV_out.cgi?user=blaxter 45464 002149_GCAT 0 10000 0 0 United Kingdom Eukaryota Nematoda Chromadorea Ascaridida Toxocaridae Toxocara EUKARYAL Toxocara canis Ge00279 EST incomplete Public Washington Univ, North Carolina State Univ NIH McCarter mccarter@genetics.wustl.edu 6265 002150_GCAT 0 0 0 0 USA Eukaryota Nematoda Enoplea Trichocephalida Trichinellidae Trichinella Trichinella spiralis EUKARYAL Trichinella spiralis Trichinella spiralis Gi00757 Genome incomplete Public Washington Univ NIH-NHGRI Clifton S http://genome.wustl.edu/Bio/email_data.cgi?staff=Sandra%20Clifton 6334 12603 002151_GCAT 0 ABIR01000000 Draft 71000 0 0 USA Eukaryota Nematoda Enoplea Trichocephalida Trichinellidae Trichinella Trichinella spiralis EUKARYAL Trichinella spiralis Trichinella spiralis Ge00099 EST incomplete Public Univ of Edinburgh, Washington Univ NIH McCarter mccarter@genetics.wustl.edu 6334 12647 002152_GCAT 0 25628 0 0 International Eukaryota Nematoda Enoplea Trichocephalida Trichuridae Trichuris Trichuris muris EUKARYAL Trichuris muris Ge00100 EST incomplete Public Sanger Institute, Univ of Edinburgh Beowulf Genomics Blaxter M http://helios.bto.ed.ac.uk/icapb/cgi-bin/CV_out.cgi?user=blaxter 70415 002153_GCAT 0 10000 0 0 United Kingdom Eukaryota Nematoda Enoplea Trichocephalida Trichuridae Trichuris Trichuris trichiura EUKARYAL Trichuris trichiura Ge00101 EST incomplete Public Univ of Edinburgh Blaxter M http://helios.bto.ed.ac.uk/icapb/cgi-bin/CV_out.cgi?user=blaxter 36087 002154_GCAT 0 0 0 0 United Kingdom Eukaryota Nematoda Chromadorea Spirurida Onchocercidae Wuchereria EUKARYAL Wuchereria bancrofti agent of lymphatic filariasis Ge00102 EST incomplete Public FilGenNet McCarter J mccarter@genetics.wustl.edu 6293 002155_GCAT 0 0 0 0 International Eukaryota Nematoda Chromadorea Rhabditida Cephalobidae Zeldia Zeldia punctata EUKARYAL Zeldia punctata Ge00103 EST incomplete Public Washington Univ McCarter J mccarter@genetics.wustl.edu 49351 002156_GCAT 0 0 0 0 USA Eukaryota Placozoa Trichoplax Trichoplax adhaerens EUKARYAL Trichoplax adhaerens Gi00753 Genome incomplete Public Washington Univ NIH-NHGRI WashU 10228 002157_GCAT 0 6x 0 0 0 Sanger USA Eukaryota Placozoa Trichoplax Trichoplax adhaerens EUKARYAL Trichoplax adhaerens. Grell-BS-1999 Grell-BS-1999 Trichoplax adhaerens Grell-BS-1999 Gc00854 Gi00793 Genome Complete and Published Public DOE Joint Genome Institute, Yale Univ DOE Srivastava M msrivast@berkeley.edu 2008-08-29 Nature 454, 955-60 10228 12874 002158_GCAT 0 NZ_ABGP00000000 Complete Level 2: High-Quality Draft 8x 50000 11520 32 Sanger USA Eukaryota Porifera Demospongiae Haplosclerida Chalinidae Reniera Reniera sp. JGI-2005 EUKARYAL Reniera sp JGI-2005 JGI-2005 Gi00794 Genome incomplete Public Univ of Hawaii, Univ of Alberta, DOE Joint Genome Institute, Univ of Queensland DOE 333134 002159_GCAT 0 0 0 0 International Eukaryota Peronosporales Phytophthora Phytophthora capsici EUKARYAL Phytophthora capsici Gi01100 Genome incomplete Public NCGR, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural, Plant Pathogen 4784 002160_GCAT 0 0 0 0 USA Pathogen Eukaryota Peronosporales Phytophthora Phytophthora infestans EUKARYAL Phytophthora infestans T30-4 T30-4 Phytophthora infestans T30-4 Gc01103 Gi00449 Genome Complete and Published Public Broad Institute NSF Nusbaum HC chad@genome.wi.mit.edu 2009-09-09 Nature Epub Agricultural, Plant Pathogen 403677 17665 002161_GCAT 0 AATU01000000 Complete 7.6x 18288 240000 17797 51 Sanger USA Potato blight Pathogen Eukaryota Peronosporales Phytophthora EUKARYAL Phytophthora infestans Phytophthora infestans Gi00583 Genome incomplete Public Sanger Institute SCRI Berriman M mb4@sanger.ac.uk Agricultural, Plant Pathogen 4787 12767 002162_GCAT 0 10x 0 0 0 United Kingdom Potato blight Pathogen Eukaryota Peronosporales Phytophthora EUKARYAL Phytophthora infestans Ge00105 EST incomplete Public Phytophthora Genome Consortium NCGR Mitchell T thomas_mitchell@ncsu.edu Agricultural, Plant Pathogen 4787 002163_GCAT 0 94091 0 0 International Pathogen Eukaryota Peronosporales Phytophthora EUKARYAL Phytophthora sojae Gi00451 Genome incomplete Public Phytophthora Genome Consortium Agricultural, Plant Pathogen 67593 002166_GCAT 0 65000 0 0 International International International Root rot Pathogen Eukaryota Streptophyta Ericales Actinidiaceae Actinidia EUKARYAL Actinidia deliciosa Kiwifruit Ge00106 EST incomplete Proprietary Genesis 3627 002167_GCAT 0 0 0 0 New Zealand Eukaryota Streptophyta Liliopsida Asparagales Alliaceae Allium EUKARYAL Allium cepa Onion Allium cepa Ge00107 EST incomplete Public Univ of Wisconsin 4679 12547 002168_GCAT 0 20159 0 0 USA Eukaryota Streptophyta Liliopsida Poales Bromeliaceae Ananas EUKARYAL Ananas comosus Pineapple Ge00108 EST incomplete Public Univ of Queensland 4615 002169_GCAT 0 0 0 0 Australia Eukaryota Streptophyta Brassicales Brassicaceae Capsella EUKARYAL Capsella rubella Capsella rubella Gi01102 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 81985 15659 002171_GCAT 0 250000 0 0 USA Eukaryota Pelagophyceae Aureococcus Aureococcus anophagefferens EUKARYAL Aureococcus anophagefferens Aureococcus anophagefferens Gi00984 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Environmental 44056 13500 002172_GCAT 0 32000 0 0 USA Reduces trace metals, Carbon sequestration Eukaryota Streptophyta Liliopsida Poales Poaceae Avena EUKARYAL Avena sativa Oat Avena sativa Gi00045 Genome incomplete Public 4498 9510 002173_GCAT 0 16000000 0 7 0 USA Eukaryota Peronosporales Phytophthora Phytophthora capsici EUKARYAL Phytophthora capsici Gi02456 Genome incomplete Public NCGR, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural, Plant Pathogen 4784 002175_GCAT 0 0 0 0 USA Pathogen Eukaryota Streptophyta Ericales Actinidiaceae Actinidia EUKARYAL Actinidia deliciosa Kiwifruit Ge00281 EST incomplete Proprietary Genesis 3627 002180_GCAT 0 0 0 0 New Zealand Eukaryota Streptophyta Liliopsida Poales Bromeliaceae Ananas EUKARYAL Ananas comosus Pineapple Ge00282 EST incomplete Public Univ of Queensland 4615 002182_GCAT 0 0 0 0 Australia Eukaryota Streptophyta Brassicales Brassicaceae Arabidopsis EUKARYAL Arabidopsis lyrata Arabidopsis lyrata Gi02457 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 59689 15628 002183_GCAT 0 0 0 0 USA Eukaryota Streptophyta Brassicales Brassicaceae Capsella EUKARYAL Capsella rubella Capsella rubella Gi02458 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 81985 13878 002184_GCAT 0 0 0 0 USA Eukaryota Streptophyta Caryophyllales Amaranthaceae Beta EUKARYAL Beta vulgaris Beet Beta vulgaris Ge00109 EST incomplete Public Rudd S s.rudd@gsf.de 161934 12562 002186_GCAT 0 0 0 0 Germany Eukaryota Streptophyta Ranunculales Ranunculaceae Aquilegia EUKARYAL Aquilegia formosa Aquilegia formosa Gi01581 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural, Ecological, Evolutionary 223430 18745 002187_GCAT 0 350000 0 0 Sanger USA Eukaryota Streptophyta Liliopsida Poales Poaceae Brachypodium Brachypodium distachyon EUKARYAL Brachypodium distachyon Bd21 Bd21 Brachypodium distachyon Gi01580 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural, Biofuels, Biotechnological, Energy production 15368 32607 002188_GCAT 0 In progress 0 0 0 USA Eukaryota Streptophyta Liliopsida Poales Poaceae Brachypodium Brachypodium distachyon EUKARYAL Brachypodium distachyon Bd21 Bd21 Ge00216 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural, Biotechnological, Energy production 15368 002189_GCAT 0 0 0 0 USA Eukaryota Streptophyta Brassicales Brassicaceae Brassica EUKARYAL Brassica napus Gi00091 Genome incomplete Public Pohang Univ, Univ of Minnesota Nam HG nam@vision.postech.ac.kr 3708 002190_GCAT 0 0 0 0 International Eukaryota Streptophyta Brassicales Brassicaceae Brassica EUKARYAL Brassica oleracea C (JBo & BoB) Brassica oleracea Gi00092 Genome incomplete Public John Innes Centre, Univ of Birmingham, Univ of Bath, Horticulture Research International, J. Craig Venter Institute BBSRC Trick M martin.trick@bbsrc.ac.uk 3712 12480 002191_GCAT 0 0.44x 0 0 9 0 0 Sanger International Eukaryota Streptophyta Brassicales Brassicaceae Brassica Brassica rapa EUKARYAL Brassica rapa L. spp pekinensis Gi02146 Ge00110 Genome-Regions incomplete Public NIAB, Chungnam National Univ 51351 12479 002192_GCAT 0 0 0 10 0 0 Clone-based Korea Eukaryota Streptophyta Brassicales Brassicaceae Brassica Brassica rapa EUKARYAL Brassica rapa pekinensis Gi00094 Genome incomplete Public NIAB, J. Craig Venter Institute, MIPS 51351 002193_GCAT 0 500000 0 0 USA Eukaryota Streptophyta Brassicales Brassicaceae Brassica EUKARYAL Brassica rapa A (JBr) Gi00093 Genome incomplete Public John Innes Centre, Univ of Birmingham, Horticulture Research International, Univ of Bath BBSRC Trick M martin.trick@bbsrc.ac.uk 3711 002194_GCAT 0 0 0 0 United Kingdom Eukaryota Streptophyta Solanales Solanaceae Capsicum Capsicum annuum EUKARYAL Capsicum annuum Ge00111 EST incomplete Public PDRC Lee, S sanghyeobl@yahoo.co.kr 40321 002195_GCAT 0 0 0 0 Korea Eukaryota Streptophyta Bryopsida Dicranales Ditrichaceae Ceratodon Ceratodon purpureus EUKARYAL Ceratodon purpureus Ge00112 EST incomplete Public Washington Univ WashU est@watson.wustl.edu 3225 002196_GCAT 0 0 0 0 USA Eukaryota Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas EUKARYAL Chlamydomonas reinhardtii Ge00113 EST incomplete Public Univ of Oklahoma, Washington Univ NSF Roe B http://cheminfo.chem.ou.edu/faculty/bar.html 3055 002197_GCAT 0 100000 0 17 0 USA Eukaryota Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas EUKARYAL Chlamydomonas reinhardtii Chlamydomonas reinhardtii Ge00114 EST incomplete Public Kazusa DNA Research Institute KAZUSA chlamy@kazusa.or.jp 3055 12263 002198_GCAT 0 100000 0 0 Japan Eukaryota Chlorophyta Prasinophyceae Mamiellales Bathycoccus EUKARYAL Bathycoccus sp BAN7 BAN7 Gi01791 Genome incomplete Public Genoscope 41874 002200_GCAT 0 Complete 0 0 0 France Eukaryota Chlorarachnion Chlorarachnion reptans EUKARYAL Chlorarachnion reptans Gi00144 Genome incomplete Public Marburg Univ Maier U maier@mailer.uni-marburg.de 29199 002201_GCAT 0 0 0 0 Germany Eukaryota Streptophyta Sapindales Rutaceae Citrus EUKARYAL Citrus sinensis Washington navel Washington navel Citrus sinensis Gi01288 Genome incomplete Public DOE Joint Genome Institute, Univ of California, Riverside 2711 9597 002202_GCAT 0 380000 0 0 USA Eukaryota Platyhelminthes Trematoda Opisthorchiida Opisthorchiidae Clonorchis Clonorchis sinensis EUKARYAL Clonorchis sinensis Clonorchis sinensis Gi01931 Genome incomplete Public Seoul National Univ 79923 17975 002555_GCAT 0 0 0 0 Korea Eukaryota Streptophyta Gentianales Rubiaceae Coffea EUKARYAL Coffea arabica L. Coffee Ge00115 EST incomplete Public Univ of Trieste 13443 002203_GCAT 0 1226 0 0 Italy Eukaryota Streptophyta Gentianales Rubiaceae Coffea EUKARYAL Coffea arabica Coffee Gi00168 Genome incomplete Public Univ of Campinas Embrapa/Cafe, FAPESP lbi@ic.unicamp.br lbi@ic.unicamp.br 13443 002204_GCAT 0 Complete 0 0 0 Brazil Eukaryota Streptophyta Cycadopsida Cycadales Cycadaceae Cycas Cycas rumphii EUKARYAL Cycas rumphii Miq Miq Cycas rumphii Ge00116 EST incomplete Public Plant Genomics Consortium Brenner E ebrenner@nybg.org 58031 12507 002205_GCAT 0 0 0 0 International Eukaryota Phaeophyceae Ectocarpales Ectocarpaceae Ectocarpus Ectocarpus siliculosus EUKARYAL Ectocarpus siliculosus Gi01103 Genome incomplete Public Genoscope, Institute de la Genomique Marine 2880 002206_GCAT 0 0 0 0 France Eukaryota Bacillariophyta Bacillariophyceae Bacillariaceae Fragilariopsis Fragilariopsis cylindrus EUKARYAL Fragilariopsis cylindrus CCMP 1102 CCMP 1102 Gi01575 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Ecological 186039 002207_GCAT 0 0 0 0 USA Psychrophile None Fresh water Eukaryota Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi EUKARYAL Emiliania huxleyi CCMP 1516 CCMP 1516 Emiliania huxleyi 1516 Gi00219 Genome incomplete Public California State Univ, DOE Joint Genome Institute DOE Read B http://www.csusm.edu/Biology/faculty_new/read.html 280463 12471 002208_GCAT 0 2x 220000 0 65 Sanger USA Eukaryota Isochrysidales Noelaerhabdaceae Emiliania EUKARYAL Emiliania huxleyi CCMP371 CCMP371 Ge00117 EST incomplete Public Univ of Iowa NSF Bhattacharya D dbhattac@blue.weeg.uiowa.edu 2903 002209_GCAT 0 0 0 0 USA Eukaryota Isochrysidales Noelaerhabdaceae Emiliania EUKARYAL Emiliania huxleyi 1516 1516 Emiliania huxleyi 1516 Ge00242 EST incomplete Public California State Univ San Marcos 2903 114 002843_GCAT 0 3000 0 0 USA Eukaryota Bangiophyceae Cyanidiales Cyanidiaceae Galdieria Galdieria sulphuraria EUKARYAL Galdieria sulphuraria Galdieria sulphuraria Gi00266 Genome incomplete Public Michigan State Univ NSF Weber AP aweber@msu.edu Biotechnological 130081 13023 002210_GCAT 0 0 0 0 Sanger USA Thermophile None Sulfur spring Eukaryota Isochrysidales Noelaerhabdaceae Emiliania EUKARYAL Emiliania huxleyi Ge00118 EST incomplete Public Brookhaven Natl Lab DOE, OBER Tyrrell T T.Tyrrell@soc.soton.ac.uk 2903 002211_GCAT 0 0 0 0 USA Eukaryota Annelida Polychaeta Terebellida Alvinellidae Alvinella Alvinella pompejana EUKARYAL Alvinella pompejana Ge00119 EST incomplete Public Scripps Research Institute, Univ of Delaware, Univ of Oregon, DOE Joint Genome Institute DOE 6376 002212_GCAT 0 0 0 0 USA Eukaryota Annelida Hirudinida Rhynchobdellida Glossiphoniidae Helobdella Helobdella robusta EUKARYAL Helobdella robusta Gi00799 Genome incomplete Public Rutgers Univ, Univ of Maryland, Univ of Missouri, St Louis, Sapporo Univ, DOE Joint Genome Institute, Univ of Texas, UCSD, Univ of California, Berkeley DOE 6412 002213_GCAT 0 0 0 0 USA Eukaryota Annelida Polychaeta Capitellida Capitellidae Capitella EUKARYAL Capitella sp. I ESC-2004 I ESC-2004 Gi00800 Genome incomplete Public DOE Joint Genome Institute DOE Boore J jlboore@lbl.gov 283909 002214_GCAT 0 Draft 240000 0 0 Sanger USA Eukaryota Streptophyta Myrtales Myrtaceae Eucalyptus Eucalyptus dunnii EUKARYAL Eucalyptus dunnii Ge00120 EST incomplete Proprietary Genesis Strabala TJ t.strabala@genesis.co.nz 183821 002215_GCAT 0 0 0 0 New Zealand Eukaryota Streptophyta Myrtales Myrtaceae Eucalyptus Eucalyptus grandis EUKARYAL Eucalyptus grandis Ge00121 EST incomplete Proprietary Genesis Strabala TJ t.strabala@genesis.co.nz 71139 002216_GCAT 0 0 0 0 New Zealand Eukaryota Streptophyta Myrtales Myrtaceae Eucalyptus Eucalyptus grandis EUKARYAL Eucalyptus grandis Ge00122 EST incomplete Public FAPESP dos Santos RV bioinfo@forests.esalq.usp.br 71139 002217_GCAT 0 0 0 0 Brazil Eukaryota Streptophyta Myrtales Myrtaceae Eucalyptus EUKARYAL Eucalyptus obliqua Ge00123 EST incomplete Proprietary Genesis Strabala TJ t.strabala@genesis.co.nz 36592 002218_GCAT 0 0 0 0 New Zealand Eukaryota Streptophyta Asterales Asteraceae Helianthus EUKARYAL Helianthus annuus Sunflower Helianthus annuus Ge00124 EST incomplete Public Univ of California, Davis 4232 12865 002219_GCAT 0 3000000 0 0 USA Eukaryota Streptophyta Liliopsida Poales Poaceae Hordeum EUKARYAL Hordeum vulgare var. distichum Barley Hordeum vulgare (barley) Gi00300 Genome incomplete Public PGRC, Clemson Univ, Univ of Arizona, Scottish Crop Research Institute Waugh R rwaugh@scri.sari.ac.uk 4513 9511 002220_GCAT 0 5000000 0 0 International Eukaryota Streptophyta Myrtales Myrtaceae Eucalyptus EUKARYAL Eucalyptus globulus Eucalyptus globulus Gi01115 Genome incomplete Public International Eucalyptus Genome Consortium 34317 12503 002221_GCAT 0 5x 0 0 0 Sanger International Eukaryota Streptophyta Myrtales Myrtaceae Eucalyptus EUKARYAL Eucalyptus Gi00246 Genome incomplete Public Australian Genome Research Facility, CRC for Sustainable Production Forestry, Univ of Tasmania, Univ of Melbourne, Southern Cross Univ, Univ of Queensland, Monash Univ, CSIRO Mitchelson K 3932 002222_GCAT 0 0 0 0 Australia Eukaryota Streptophyta Liliopsida Poales Poaceae Eragrostis Eragrostis pilosa EUKARYAL Eragrostis pilosa Ge00125 EST incomplete Public Debre Zeit Research Center, Cornell Univ 208273 002223_GCAT 0 0 0 0 International Eukaryota Streptophyta Liliopsida Poales Poaceae Eragrostis EUKARYAL Eragrostis tef Eragrostis tef Ge00126 EST incomplete Public Debre Zeit Research Center, Cornell Univ 110835 16857 002224_GCAT 0 730000 0 0 International Eukaryota Streptophyta Liliopsida Poales Poaceae Festuca EUKARYAL Festuca spp. Ge00127 EST incomplete Proprietary Genesis 4605 002225_GCAT 0 0 0 0 New Zealand Eukaryota Streptophyta Fabales Fabaceae Glycine EUKARYAL Glycine max Soybean Gi00280 Genome incomplete Public Iowa State Univ, USDA-ARS, Cornell Univ, Washington Univ WASHU est@watson.wustl.edu 3847 002226_GCAT 0 1200000 0 0 USA Eukaryota Streptophyta Fabales Fabaceae Glycine EUKARYAL Glycine max cultivar Williams 82 cultivar Williams 82 Soybean Glycine max Gi02159 Genome incomplete Public USDA, DOE Joint Genome Institute, Univ of Missouri, Purdue Univ Bruce D microbes@cuba.jgi-psf.org Agricultural 3847 19861 002811_GCAT 0 8x 0 0 0 Sanger USA Eukaryota Streptophyta Fabales Fabaceae Glycine EUKARYAL Glycine max Soybean Glycine max Ge00128 EST incomplete Public Univ of Illinois at Urbana-Champaign NSF Vodkin LO http://www.cropsci.uiuc.edu/faculty/vodkin/ 3847 12367 002227_GCAT 0 0 0 0 USA Eukaryota Streptophyta Malpighiales Euphorbiaceae Manihot EUKARYAL Manihot esculenta CV AM560-2 CV AM560-2 yuca, tapioca, cassava Manihot esculenta Gi01584 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Energy production, Agricultural 3983 17471 002228_GCAT 0 In progress 760000 0 0 USA Eukaryota Streptophyta Malpighiales Euphorbiaceae Manihot EUKARYAL Manihot esculenta yuca, tapioca, cassava Manihot esculenta Ge00230 EST complete Public Univ de Perpignan Energy production, Biotechnological, Agricultural 3983 13644 002819_GCAT 0 Complete 11954 0 0 France Eukaryota Streptophyta Malvales Malvaceae Gossypium EUKARYAL Gossypium raimondii Gi01582 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Energy production, Agricultural 29730 002229_GCAT 0 2100000 0 0 USA Eukaryota Streptophyta Malvales Malvaceae Gossypium EUKARYAL Gossypium arboreum Tree cotton Gossypium arboreum Ge00129 EST incomplete Public Clemson Univ NSF Wilkins TA tawilkins@ucdavis.edu 29729 12946 002230_GCAT 0 0 0 0 USA Eukaryota Streptophyta Malvales Malvaceae Gossypium EUKARYAL Gossypium hirsutum L Maxxa Maxxa Cotton Gi00281 Genome-Regions incomplete Public Iowa State Univ, Texas A&M Univ, Clemson Univ, Univ of California, Davis 3635 002231_GCAT 0 2118000 0 0 BAC clones USA Eukaryota Streptophyta Malvales Malvaceae Gossypium EUKARYAL Gossypium hirsutum L Maxxa Maxxa Cotton Ge00274 EST incomplete Public Clemson Univ, Univ of California, Davis, Arizona Genomics Institute NSF Wilkins TA tawilkins@ucdavis.edu 3635 002984_GCAT 0 177182 0 0 USA Eukaryota Streptophyta Gentianales Rubiaceae EUKARYAL Hedyotis sp. Ge00223 EST incomplete Public Plant Genomics Consortium Motley T tmotley@nybg.org 58416 002232_GCAT 0 0 0 0 International Eukaryota Chordata Branchiostomidae Branchiostoma EUKARYAL Branchiostoma floridae S238N-H82 S238N-H82 Amphioxus Branchiostoma floridae Gc00960 Gi00774 Genome Complete and Published Public DOE Joint Genome Institute DOE Rokhsar DS DSRokhsar@lbl.gov 2008-06-19 Nature 453, 1064-71 7739 20249 002233_GCAT 0 ABEP00000000 Complete Level 2: High-Quality Draft 11x 520000 0 0 USA Marine Eukaryota Chordata Branchiostomidae Branchiostoma EUKARYAL Branchiostoma floridae. Gi00775 Genome incomplete Public Sanger Institute 7739 002234_GCAT 0 0 0 0 United Kingdom Eukaryota Chordata Branchiostomidae Branchiostoma EUKARYAL Branchiostoma floridae Gi01792 Genome incomplete Public RIKEN MEXT 7739 002235_GCAT 0 0 0 0 Japan Eukaryota Cnidaria Anthozoa Scleractinia Poritidae Porites Porites lobata EUKARYAL Porites lobata Gi01480 Genome incomplete Public Washington Univ NIH-NHGRI Clifton S http://genome.wustl.edu/Bio/email_data.cgi?staff=Sandra%20Clifton 104759 002236_GCAT 0 0 0 0 USA Fresh water Eukaryota Cnidaria Anthozoa Scleractinia Faviidae Montastraea EUKARYAL Montastraea faveolata Ge00217 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 48498 002237_GCAT 0 32000 0 0 USA None Eukaryota Cnidaria Anthozoa Scleractinia Acroporidae Acropora EUKARYAL Acropora palmata Ge00218 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 6131 002238_GCAT 0 32000 0 0 USA None Eukaryota Cnidaria Anthozoa Scleractinia Acroporidae Acropora Acropora millepora EUKARYAL Acropora millepora Gi01481 Genome incomplete Public Washington Univ NIH-NHGRI 45264 002239_GCAT 0 0 0 0 USA Fresh water Eukaryota Cnidaria Anthozoa Scleractinia Acroporidae Acropora EUKARYAL Acropora palmata Gi01482 Genome incomplete Public Washington Univ NIH-NHGRI Clifton S http://genome.wustl.edu/Bio/email_data.cgi?staff=Sandra%20Clifton 6131 002240_GCAT 0 0 0 0 USA Fresh water Eukaryota Cnidaria Hydrozoa Hydroida Hydridae Hydra EUKARYAL Hydra magnipapillata 105 105 Hydra magnipapillata Gi00754 Genome incomplete Public J. Craig Venter Institute NIH-NHGRI 6085 12876 002241_GCAT 0 ABRM01000000 Draft 3-4Kb, 8-10Kb, 10-12Kb 6x 0 0 0 Sanger USA Eukaryota Cnidaria Hydrozoa Hydroida Hydridae Hydra EUKARYAL Hydra magnipapillata 105 105 Hydra magnipapillata Ge00130 EST incomplete Public Univ of California, Irvine NSF Bode HR http://devcell.bio.uci.edu/html/Faculty%20CVs/bode.html 6085 12875 002242_GCAT 0 0 0 0 USA Eukaryota Cnidaria Hydrozoa Hydroida Hydractiniidae Hydractinia Hydractinia symbiolongicarpus EUKARYAL Hydractinia symbiolongicarpus Gi01104 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 13093 002243_GCAT 0 800000 0 0 USA Eukaryota Streptophyta Asterales Asteraceae Lactuca EUKARYAL Lactuca sativa Lettuce Lactuca sativa Ge00131 EST incomplete Public Univ of California, Davis 4236 12869 002245_GCAT 0 0 0 0 USA Eukaryota Streptophyta Liliopsida Poales Poaceae Lolium EUKARYAL Lolium perenne Lolium perenne Gi00336 Genome incomplete Proprietary ViaLactia Elborough K 4522 15516 002246_GCAT 0 2300000 0 0 New Zealand Eukaryota Streptophyta Liliopsida Poales Poaceae Lolium EUKARYAL Lolium spp. Ge00132 EST incomplete Proprietary Genesis 4520 002247_GCAT 0 0 0 0 New Zealand Eukaryota Streptophyta Fabales Fabaceae Lotus EUKARYAL Lotus japonicus Miyakojima MG-20 Miyakojima MG-20 Lotus japonicus MG-20 Gi00574 Genome incomplete Public Kazusa DNA Research Institute Tabata S tabata@kazusa.or.jp 34305 28941 002248_GCAT 0 Draft 472000 0 6 0 0 Sanger, Clone-based Japan Eukaryota Streptophyta Fabales Fabaceae Lotus EUKARYAL Lotus japonicus Miyakogusa Lotus japonicus Ge00134 EST incomplete Public Kazusa DNA Research Institute Tabata S tabata@kazusa.or.jp 34305 13205 002249_GCAT 0 74472 0 0 Japan Eukaryota Streptophyta Solanales Solanaceae Solanum EUKARYAL Solanum (Lycopersicon) lycopersicum (esculentum) Tomato Solanum lycopersicum Gi00338 Genome incomplete Public International Collaboration NSF Tanksley S sdt4@cornell.edu 4081 119 002250_GCAT 0 0 0 12 0 International Eukaryota Streptophyta Solanales Solanaceae Solanum EUKARYAL Lycopersicon esculentum cv. Heinz 1706 Tomato Solanum lycopersicum Gi00337 Genome incomplete Public Clemson Univ 4081 9509 002251_GCAT 0 0 0 12 0 USA Eukaryota Streptophyta Rosales Rosaceae Malus EUKARYAL Malus domestica Apple Malus domestica Ge00135 EST incomplete Public Univ of Illinois at Urbana-Champaign 3750 12906 002252_GCAT 0 155096 0 0 USA Eukaryota Streptophyta Rosales Rosaceae Malus Malus sp. EUKARYAL Malus spp. Apple Ge00136 EST incomplete Proprietary Genesis, HortResearch 3751 002253_GCAT 0 0 0 0 New Zealand Eukaryota Streptophyta Fabales Fabaceae Medicago EUKARYAL Medicago sativa Alfalfa Gi00348 Genome incomplete Public USDA-ARS, Kansas State Univ 3879 002254_GCAT 0 0 0 0 USA Eukaryota Streptophyta Fabales Fabaceae Medicago EUKARYAL Medicago truncatula Medicago truncatula Ge00137 EST incomplete Public Genoscope 3880 10746 002255_GCAT 0 236854 0 0 France Eukaryota Streptophyta Fabales Fabaceae Medicago EUKARYAL Medicago truncatula Medicago truncatula Gi00349 Genome incomplete Public Sanger Institute, Univ of Oklahoma, Genoscope, J. Craig Venter Institute Noble Foundation May GD gdmay@noble.org 3880 10791 002256_GCAT 0 500000 0 0 BAC clones International Eukaryota Streptophyta Fabales Fabaceae Medicago EUKARYAL Medicago truncatula LGIII LGIII Gi00350 Genome incomplete Public Texas A&M Univ NSF 3880 002257_GCAT 0 0 0 0 USA Eukaryota Streptophyta Caryophyllales Aizoaceae Mesembryanthemum EUKARYAL Mesembryanthemum crystallinum Iceplant Mesembryanthemum crystallinum Ge00138 EST incomplete Public Univ of Arizona, Univ of Nevada, Oklahoma State Univ NSF 3544 12909 002258_GCAT 0 390000 0 0 USA Eukaryota Chlorophyta Prasinophyceae Mamiellales Micromonas Micromonas pusilla EUKARYAL Micromonas pusilla NOUM17, RCC 299 NOUM17, RCC 299 Micromonas pusilla RCC299 RCC 299 (NOUM17) Gi00985 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Environmental, Ecological 38833 15676 002259_GCAT 0 15000 0 0 USA Equatorial Pacific Equatorial Pacific None Fresh water Carbon sequestration, Carbon dioxide fixation Eukaryota Chlorophyta Prasinophyceae Mamiellales Micromonas Micromonas pusilla EUKARYAL Micromonas pusilla CCMP490(RCC 114) CCMP490(RCC 114) Micromonas pusilla CCMP1545 Gc01017 Gi00986 Genome Complete and Published Public DOE Joint Genome Institute DOE Worden A azworden@mbari.org 2009-04-13 Science 324, 268-72 Environmental, Ecological 564608 15678 002260_GCAT 0 ACCP00000000 Complete Level 2: High-Quality Draft 22000 0 0 USA East Coast East Coast None Fresh water Carbon sequestration, Carbon dioxide fixation Eukaryota Streptophyta Lamiales Phrymaceae Mimulus EUKARYAL Mimulus guttatus Mimulus guttatus Gi01105 Genome incomplete Public Duke Univ, DOE Joint Genome Institute DOE Willis J jwillis@duke.edu 4155 13880 002261_GCAT 0 430000 0 0 USA Eukaryota Streptophyta Lamiales Orobanchaceae Triphysaria EUKARYAL Triphysaria versicolor Ge00275 EST incomplete Public Virginia Tech NSF Westwood J westwood@vt.edu Agricultural 64093 003069_GCAT 0 0 0 0 USA Facultative parasite Eukaryota Streptophyta Lamiales Orobanchaceae Striga EUKARYAL Striga hermonthica Ge00276 EST incomplete Public Virginia Tech NSF Westwood J westwood@vt.edu 68872 003070_GCAT 0 0 0 0 USA Obligate parasite Eukaryota Streptophyta Lamiales Orobanchaceae Phelipanche EUKARYAL Orobanche ramosa Ge00277 EST incomplete Public Virginia Tech NSF Westwood J westwood@vt.edu 46066 003071_GCAT 0 0 0 0 USA Eukaryota Streptophyta Fabales Fabaceae Chamaecrista EUKARYAL Chamaecrista fasciculata Ge00278 EST incomplete Public Carleton College NSF Singer S ssinger@carleton.edu 53854 003072_GCAT 0 0 0 0 USA Eukaryota Streptophyta Lamiales Phrymaceae Mimulus EUKARYAL Mimulus guttatus Gi01946 Genome incomplete Public NSF 4155 002570_GCAT 0 CUGI 0 0 0 USA Eukaryota Streptophyta Lamiales Phrymaceae Mimulus Mimulus lewisii EUKARYAL Mimulus lewisii Gi01947 Genome incomplete Public NSF 69919 002571_GCAT 0 CUGI 0 0 0 USA Eukaryota Streptophyta Ranunculales Ranunculaceae Aquilegia EUKARYAL Aquilegia formosa Gi01948 Genome incomplete Public NSF 223430 002572_GCAT 0 CUGI 0 0 0 USA Eukaryota Choanoflagellida Codonosigidae Monosiga Monosiga ovata EUKARYAL Monosiga ovata Monosiga ovata Gi00752 Genome incomplete Public Washington Univ NIH-NHGRI 81526 12871 002262_GCAT 0 6x 0 0 0 Sanger USA Fresh water Eukaryota Choanoflagellida Codonosigidae Monosiga Monosiga brevicollis EUKARYAL Monosiga brevicollis MX1 MX1 Monosiga brevicollis MX1 Gc00705 Gi01376 Genome Complete and Published Public DOE Joint Genome Institute DOE Rokhsar D DSRokhsar@lbl.gov 2007-12-20 Nature 51, 783-8 431895 19045 002263_GCAT 0 NZ_ABFJ00000000 Complete Level 2: High-Quality Draft 8.1x 38648 0 54 Sanger USA Fresh water Eukaryota Streptophyta Liliopsida Zingiberales Musaceae Musa EUKARYAL Musa acuminata calcutta 4 calcutta 4 Banana Musa acuminata Gi00379 Genome incomplete Public IPGRI 4641 15720 002264_GCAT 0 0 0 0 International Eukaryota Streptophyta Liliopsida Zingiberales Musaceae Musa EUKARYAL Musa acuminata Banana Ge00262 EST incomplete Public J. Craig Venter Institute Town C cdtown@jcvi.org 4641 002863_GCAT 0 6376 0 0 USA Eukaryota Ascomycota Sordariomycetes Hypocreales Clavicipitaceae Neotyphodium EUKARYAL Neotyphodium coenophialum Ge00139 EST incomplete Public La Trobe Univ 5047 002265_GCAT 0 0 0 0 Australia Eukaryota Ascomycota Sordariomycetes Hypocreales Clavicipitaceae Neotyphodium EUKARYAL Neotyphodium lolii Ge00140 EST incomplete Public La Trobe Univ 73839 002266_GCAT 0 0 0 0 Australia Eukaryota Streptophyta Solanales Solanaceae Nicotiana Nicotiana benthamiana EUKARYAL Nicotiana benthamiana Nicotiana benthamiana Ge00141 EST incomplete Public North Carolina State Univ 4100 12911 002267_GCAT 0 0 0 0 USA Eukaryota Streptophyta Solanales Solanaceae Nicotiana EUKARYAL Nicotiana tabacum (Burley type) TN86 TN86 American tobacco Nicotiana tabacum K326, Burley 21, TN86 Ge00210 EST incomplete Public Altadis, ATC ESTobacco http://www.estobacco.info/contacts.html Agricultural 4097 16344 002268_GCAT 0 0 0 0 European Consortium Eukaryota Streptophyta Solanales Solanaceae Nicotiana EUKARYAL Nicotiana tabacum (Burley type) Burley 21 Burley 21 American tobacco Ge00211 EST incomplete Public Altadis, ATC ESTobacco http://www.estobacco.info/contacts.html Agricultural 4097 002269_GCAT 0 0 0 0 European Consortium Eukaryota Streptophyta Solanales Solanaceae Nicotiana EUKARYAL Nicotiana tabacum (Flue-cured type) K326 K326 American tobacco Ge00212 EST incomplete Public Altadis, ATC ESTobacco http://www.estobacco.info/contacts.html Agricultural 4097 002270_GCAT 0 0 0 0 European Consortium Eukaryota Streptophyta Solanales Solanaceae Nicotiana EUKARYAL Nicotiana tabacum BY-2 BY-2 American tobacco Nicotiana tabacum Ge00213 EST incomplete Public RIKEN Matsuoka K BY2@psc.riken.go.jp Agricultural 4097 13237 002271_GCAT 0 0 0 0 Japan Eukaryota Streptophyta Liliopsida Poales Poaceae Oryza Oryza sativa EUKARYAL Oryza sativa ssp. japonica c.v. Nipponbare c.v. Nipponbare Oryza sativa Japonica Group Nipponbare Gi02164 Genome incomplete Public Beijing Genomics Institute Yu J junyu@genomics.org.cn 39947 13139 002822_GCAT 0 AACV00000000 Draft Level 2: High-Quality Draft 0 30957 12 0 0 Sanger China Eukaryota Streptophyta Liliopsida Poales Poaceae Oryza EUKARYAL Oryza sativa Nakdong Oryza sativa Ge00142 EST complete Public Myongji Univ, Arizona Genomics Institute 4530 13185 002273_GCAT 0 Complete 29000 0 0 International Eukaryota Streptophyta Liliopsida Poales Poaceae Oryza EUKARYAL Oryza sativa Rice Ge00143 EST incomplete Proprietary Monsanto rice.webmaster rice.webmaster@rice-research.org 4530 002274_GCAT 0 0 0 0 USA Eukaryota Chlorophyta Prasinophyceae Mamiellales Ostreococcus EUKARYAL Ostreococcus sp. Ge00144 EST incomplete Public UCSB, DOE Joint Genome Institute DOE Palenik B http://sio.ucsd.edu/Profile/?who=bpalenik 70447 002276_GCAT 0 0 0 0 USA Eukaryota Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum EUKARYAL Phaeodactylum tricornutum CCAP1055/1 CCAP1055/1 Phaeodactylum tricornutum Gc00872 Gi00817 Genome Complete and Published Public DOE Joint Genome Institute DOE Bowler C cbowler@biologie.ens.fr 2008-10-15 Nature 456, 239-44 556484 13152 002277_GCAT 0 Complete 9.6x 30000 10010 33 0 0 Sanger USA Monoclonal culture derived from a fusiform cell in May 2003 from strain CCMP632 May 2003 Monoclonal culture derived from a fusiform cell in May 2003 from strain CCMP632 Fresh water, Fresh water Eukaryota Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum EUKARYAL Phaeodactylum tricornutum Bohlin clone CCMP632 Bohlin clone CCMP632 Phaeodactylum tricornutum Ge00233 EST incomplete Public Avesthagen 2850 13305 002825_GCAT 0 89000 0 0 India Fresh water, Fresh water Eukaryota Streptophyta Liliopsida Poales Poaceae Panicum EUKARYAL Panicum virgatum U418 U418 Switchgrass Panicum virgatum Ge00214 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 38727 17451 002278_GCAT 0 11990 0 0 USA Eukaryota Streptophyta Fabales Fabaceae Phaseolus EUKARYAL Phaseolus coccineus scarlet runner bean Phaseolus coccineus Ge00145 EST incomplete Public UCLA Goldberg B http://www.mcdb.ucla.edu/Research/Goldberg/ 3886 12925 002279_GCAT 0 0 0 0 USA Eukaryota Streptophyta Fabales Fabaceae Phaseolus EUKARYAL Phaseolus vulgaris Bean Phaseolus vulgaris Gi00446 Genome incomplete Public N. Dakota State Univ McClean P mcclean@beangenes.cws.ndsu.nodak.edu 3885 12933 002280_GCAT 0 630000 0 0 USA Eukaryota Streptophyta Bryopsida Funariales Funariaceae Physcomitrella Physcomitrella patens EUKARYAL Physcomitrella patens Physcomitrella patens Ge00146 EST incomplete Public National Institute of Genetics, Japan 3218 12939 002281_GCAT 0 15883 0 0 Japan Eukaryota Streptophyta Bryopsida Funariales Funariaceae Physcomitrella Physcomitrella patens EUKARYAL Physcomitrella patens Ge00147 EST incomplete Public Washington Univ EST project est@watson.wustl.edu 3218 002282_GCAT 0 0 0 0 USA Eukaryota Streptophyta Bryopsida Funariales Funariaceae Physcomitrella Physcomitrella patens EUKARYAL Physcomitrella patens Ge00148 EST incomplete Public Univ of Leeds BBSRC Knight C gen6ck@leeds.ac.uk 3218 002283_GCAT 0 0 0 0 United Kingdom Eukaryota Streptophyta Bryopsida Funariales Funariaceae Physcomitrella Physcomitrella patens EUKARYAL Physcomitrella. patens patens Physcomitrella patens subsp. patens Gc00711 Gi00768 Genome Complete and Published Public DOE Joint Genome Institute, Univ of California, Berkeley DOE Boore J jlboore@calmail.berkeley.edu 2008-01-24 Science 319, 64-9 3218 28131 002284_GCAT 0 NZ_ABEU00000000 Complete Level 2: High-Quality Draft 453929 0 27 0 0 USA Eukaryota Streptophyta Coniferopsida Coniferales Pinaceae Pinus EUKARYAL Pinus radiata Monterey pine Ge00149 EST incomplete Proprietary Genesis Strabala TJ t.strabala@genesis.co.nz 3347 002285_GCAT 0 0 0 0 New Zealand Eukaryota Streptophyta Coniferopsida Coniferales Pinaceae Pinus EUKARYAL Pinus taeda Loblolly pine Ge00150 EST incomplete Public Institute of Forest Genetics, Univ of Minnesota, North Carolina State Univ DOE UMN pipeline@mail.ahc.umn.edu 3352 002286_GCAT 0 0 0 0 USA Eukaryota Streptophyta Caryophyllales Plumbaginaceae Plumbago EUKARYAL Plumbago zeylanica Plumbago zeylanica Ge00151 EST incomplete Public Univ of Oklahoma Roe B broe@ou.edu 76149 12942 002287_GCAT 0 0 0 0 USA Eukaryota Cnidaria Hydrozoa Hydroida Hydractiniidae Podocoryna EUKARYAL Podocoryne carnea Ge00152 EST incomplete Public Univ of California, Irvine NSF Bode HR http://devcell.bio.uci.edu/html/Faculty%20CVs/bode.html 6096 002288_GCAT 0 0 0 0 USA Eukaryota Streptophyta Sapindales Rutaceae Poncirus EUKARYAL Poncirus trifoliata Poncirus trifoliata Gi01289 Genome incomplete Public U.S. Citrus Genomics USDA 37690 10879 002289_GCAT 0 9x 0 0 0 Sanger USA Eukaryota Streptophyta Malpighiales Salicaceae Populus Populus tremula x Populus tremuloides EUKARYAL Populus tremula x tremuloides Poplar Populus tremula x Populus tremuloides Ge00153 EST incomplete Public Swedish Univ of Agricultural Sciences, Umea Univ, Centre for Forest Biotechnology, Royal Institute of Technology, Stockholm Bhalerao R rupali.bhalerao@plantphys.umu.se 47664 13255 002290_GCAT 0 0 0 0 Sweden Eukaryota Streptophyta Malpighiales Salicaceae Populus EUKARYAL Populus trichocarpa x deltoides Ge00154 EST incomplete Public INRA Martin F fmartin@nancy.inra.fr 3696 002291_GCAT 0 0 0 0 France Eukaryota Bangiophyceae Bangiales Bangiaceae Porphyra Porphyra yezoensis EUKARYAL Porphyra yezoensis Porphyra yezoensis Ge00155 EST incomplete Public Kazusa DNA Research Institute Kazusa porphyra@kazusa.or.jp 2788 9503 002293_GCAT 0 0 0 0 Japan Eukaryota Streptophyta Rosales Rosaceae Prunus EUKARYAL Prunus dulcis Almond Prunus dulcis Ge00156 EST incomplete Public Clemson Univ 3755 12944 002294_GCAT 0 0 0 0 USA Eukaryota Streptophyta Rosales Rosaceae Prunus EUKARYAL Prunus persica Peach Prunus persica Ge00157 EST incomplete Public Clemson Univ 3760 12949 002295_GCAT 0 0 0 0 USA Eukaryota Streptophyta Malpighiales Euphorbiaceae Ricinus EUKARYAL Ricinus communis Hale Hale Ricinus communis Gi01290 Genome incomplete Public J. Craig Venter Institute NIH-NIAID 3988 16585 002296_GCAT 0 AASG02000000 Draft 2.45X 0 0 10 0 0 Sanger USA Eukaryota Streptophyta Liliopsida Poales Poaceae Saccharum EUKARYAL Saccharum sp. Sugarcane Ge00158 EST incomplete Public Univ of Campinas FAPESP Arruda P parruda@unicamp.br 128810 002297_GCAT 0 0 0 0 Brazil Eukaryota Streptophyta Liliopsida Poales Poaceae Secale EUKARYAL Secale cereale Rye Secale cereale Ge00159 EST incomplete Public USDA TIGR tgi@tigr.org 4550 12981 002298_GCAT 0 9293 0 0 USA Eukaryota Streptophyta Isoetopsida Selaginellales Selaginellaceae Selaginella EUKARYAL Selaginella moellendorfii Selaginella moellendorffii Gi00760 Genome incomplete Public DOE Joint Genome Institute, Purdue Univ DOE Banks K kbanks@ecn.purdue.edu 88036 13078 002299_GCAT 0 100000 0 0 Sanger USA Eukaryota Streptophyta Isoetopsida Selaginellales Selaginellaceae Selaginella EUKARYAL Selaginella moellendorfii Selaginella moellendorfii Ge00264 EST complete Public Purdue Univ 88036 16100 002865_GCAT 0 Complete 2181 0 0 USA Eukaryota Streptophyta Solanales Solanaceae Solanum EUKARYAL Solanum tuberosum Potato Solanum tuberosum Ge00160 EST complete Public Univ of Wisconsin, Cornell Univ, Univ of Minnesota, Genome Canada, J. Craig Venter Institute, Univ of California, Berkeley NSF Baker B bbaker@socrates.berkeley.edu 4113 12983 002300_GCAT 0 61940 0 0 USA Eukaryota Streptophyta Solanales Solanaceae Solanum EUKARYAL Solanum tuberosum Potato Solanum tuberosum Gi01528 Genome incomplete Public International Consortium Bachem C http://www.potatogenome.net/contacts.htm 4113 13297 002301_GCAT 0 0 0 0 International Eukaryota Streptophyta Solanales Solanaceae Solanum EUKARYAL Solanum bulbocastanum ornamental nightshade Solanum bulbocastanum Gi01943 Genome incomplete Public J. Craig Venter Institute 147425 17441 002567_GCAT 0 0 0 12 0 0 USA None Eukaryota Streptophyta Solanales Solanaceae Solanum EUKARYAL Solanum demissum Solanum demissum Gi01944 Genome incomplete Public J. Craig Venter Institute 50514 17439 002568_GCAT 0 0 0 12 0 0 USA None Eukaryota Streptophyta Liliopsida Poales Poaceae Sorghum EUKARYAL Sorghum bicolor Sorghum Sorghum bicolor Ge00161 EST incomplete Public Univ of Georgia NSF Paterson A paterson@uga.edu 4558 10786 002302_GCAT 0 0 0 0 USA Eukaryota Streptophyta Liliopsida Poales Poaceae Sorghum EUKARYAL Sorghum bicolor Gi00987 Genome incomplete Public Orion Genomics NSF Bedell JA jbedell@oriongenomics.com 4558 002303_GCAT 0 0 0 10 0 0 USA Eukaryota Streptophyta Liliopsida Poales Poaceae Sorghum EUKARYAL Sorghum bicolor Sorghum bicolor BT x 623 Gc00959 Gi01107 Genome Complete and Published Public DOE Joint Genome Institute DOE Paterson AH paterson@uga.edu 2009-01-29 Nature 457, 551-6 Agricultural, Bioenergy, Biofuels, Biotechnological 4558 13876 002304_GCAT 0 Complete Level 2: High-Quality Draft 4x 760000 0 0 Sanger USA Eukaryota Streptophyta Brassicales Brassicaceae Thellungiella EUKARYAL Thellungiella halophila Thellungiella halophila Gi01577 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural, Biotechnological 98038 18765 002305_GCAT 0 0 0 0 USA Psychrotolerant None Eukaryota Streptophyta Malvales Malvaceae Theobroma EUKARYAL Theobroma cacao Cacao Theobroma cacao Gi01529 Genome incomplete Public SHRS USDA Schnell RJ http://www.ars.usda.gov/pandp/people/people.htm?personid=5003 Agricultural 3641 16875 002306_GCAT 0 0 0 0 USA Eukaryota Streptophyta Lamiales Orobanchaceae Triphysaria EUKARYAL Triphysaria versicolor Triphysaria versicolor Gi01291 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 64093 13879 002307_GCAT 0 1200000 0 0 USA Parasite Eukaryota Streptophyta Liliopsida Poales Poaceae Triticum EUKARYAL Triticum aestivum Wheat Rhinolophus monoceros Ge00283 EST incomplete Public cerealsDB, International Cooperative NSF, BBSRC contact http://wheat.pw.usda.gov/NSF/participants.html 4565 10678 002308_GCAT 0 600000 0 0 International Eukaryota Streptophyta Ericales Ericaceae EUKARYAL Vaccinium spp. Blueberry Ge00162 EST incomplete Proprietary Genesis 13749 002309_GCAT 0 0 0 0 New Zealand Eukaryota Streptophyta Vitales Vitaceae Vitis EUKARYAL Vitis shuttleworthii JL2001 JL2001 Ge00163 EST incomplete Public Florida A&M Univ 246827 002310_GCAT 0 0 0 0 USA Eukaryota Streptophyta Vitales Vitaceae Vitis EUKARYAL Vitis vinifera Wine grape Ge00164 EST incomplete Public Centre for Plant Conservation Genetics contact http://www.scu.edu.au/research/cpcg/genomics/sxn4/contact.php 29760 002311_GCAT 0 0 0 0 Australia Eukaryota Streptophyta Vitales Vitaceae Vitis EUKARYAL Vitis vinifera L. Pinot Noir, clone ENTAV 115 Pinot Noir, clone ENTAV 115 Wine grape Vitis vinifera cv Pinot Noir, clone 115 Gc00710 Gi02175 Genome Complete and Published Public IASMA Research Center Province of Trento 2007-12-19 PLoS ONE 2, e1326 29760 18357 002868_GCAT 0 AM423240-489403 Complete Level 2: High-Quality Draft 2 Kb, 3 Kb, 6 Kb, 10 Kb, 12 Kb Assemble 11x FgenesH, Twinscan, GlimmerHMM 504600 29585 19 0 0 Sanger, 454 Italy Young shoots of Pinot Noir, clone ENTAV115 Young shoots of Pinot Noir, clone ENTAV115 Eukaryota Streptophyta Vitales Vitaceae Vitis EUKARYAL Vitis vinifera Vitis vinifera Ge00165 EST incomplete Public Univ of California, Davis Cook D drcook@ucdavis.edu 29760 12993 002313_GCAT 0 0 0 0 USA Eukaryota Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri EUKARYAL Volvox carteri f. nagariensis 69-1b 69-1b Volvox carteri f. nagariensis Gi00776 Genome incomplete Public DOE Joint Genome Institute DOE Evolutionary, Model organism 3068 13109 002314_GCAT 0 120000 0 0 USA Sphere-shaped None Multicellular Eukaryota Streptophyta Liliopsida Poales Poaceae Zea EUKARYAL Zea mays B73 Corn Zea mays Gi00705 Genome incomplete Public Univ of Arizona, cerealsDB, Univ of Minnesota, Cold Spring Harbor Laboratory, Washington Univ BBSRC Coe E CoeE@missouri.edu 4577 10769 002315_GCAT 0 2400000 0 10 0 0 USA Eukaryota Mollusca Gastropoda Opisthobranchia Aplysiidae Aplysia EUKARYAL Aplysia californica Sea Slug Aplysia californica Gi00988 Genome incomplete Public Broad Institute NIH-NHGRI 6500 13635 002316_GCAT 0 AASC01000000 Draft 6x 0 0 17 0 0 Sanger USA F4 generation inbred in Miami USA F4 generation inbred in Miami Eukaryota Mollusca Bivalvia Pectinoida Pectinidae Argopecten EUKARYAL Argopecten irradians Bay scallop Argopecten irradians Ge00166 EST incomplete Public Marine Biological Laboratory Goetz F http://www.mbl.edu/goetz/ 31199 13038 002317_GCAT 0 0 0 0 USA Eukaryota Mollusca Gastropoda Pulmonata Planorbidae Biomphalaria EUKARYAL Biomphalaria glabrata Biomphalaria glabrata Gi00755 Genome incomplete Public Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth 6526 12879 002318_GCAT 0 6x 931000 0 0 Sanger USA Eukaryota Mollusca Gastropoda Docoglossa Lottiidae Lottia Lottia scutum EUKARYAL Lottia scutum Gi00798 Genome incomplete Public Univ of Arizona, DOE Joint Genome Institute, Univ of Washington, Univ of California, Berkeley, Univ of Queensland DOE Bruce D microbes@cuba.jgi-psf.org 351231 002319_GCAT 0 0 0 0 International Eukaryota Mollusca Gastropoda Docoglossa Lottiidae Lottia Lottia gigantea EUKARYAL Lottia gigantea Gi01889 Genome incomplete Public DOE Joint Genome Institute, Univ of California, Berkeley DOE Bruce D microbes@cuba.jgi-psf.org 225164 002320_GCAT 0 0 0 0 USA Eukaryota Mollusca Bivalvia Mytiloida Mytilidae Mytilus EUKARYAL Mytilus californianus Gi01108 Genome incomplete Public Stanford Univ, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Environmental 6549 002321_GCAT 0 1570000 0 0 USA None Fresh water Eukaryota Mollusca Bivalvia Veneroida Mactridae Spisula EUKARYAL Spisula solidissima Clam Spisula solidissima Ge00220 EST incomplete Public Hebrew Univ, Marine Biological Laboratory, Technion-Israel Institute of Technology Gruss Lipper Family Foundation 6584 12960 002322_GCAT 0 0 0 0 International Eukaryota Streptophyta Malpighiales Euphorbiaceae Euphorbia EUKARYAL Euphorbia esula leafy spurge Ge00221 EST incomplete Public Univ of Illinois at Urbana-Champaign Anderson J Andersjv@fargo.ars.usda.gov 3993 002323_GCAT 0 0 0 0 USA Eukaryota Mollusca Bivalvia Ostreoida Ostreidae Crassostrea EUKARYAL Crassostrea virginica Crassostrea virginica Ge00167 EST incomplete Public Auburn Univ 6565 12979 002324_GCAT 0 0 0 0 USA Eukaryota Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus EUKARYAL Lytechinus variegatus Green urchin Gi00339 Genome incomplete Public BCM-HGSC NIH-NHGRI Highlander, SK sarahh@bcm.tmc.edu 7654 002325_GCAT 0 0 0 0 USA Eukaryota Arthropoda Chilopoda Geophilomorpha Linotaeniidae Strigamia Strigamia maritima EUKARYAL Strigamia maritima Strigamia maritima Gi02481 Genome incomplete Public BCM-HGSC NIH-NHGRI Highlander, SK sarahh@bcm.tmc.edu Evolutionary 126957 20501 003206_GCAT 0 0 0 0 USA Eukaryota Echinodermata Echinoidea Echinoida Strongylocentrotidae Strongylocentrotus EUKARYAL Strongylocentrotus franciscanus Strongylocentrotus franciscanus Gi02482 Genome incomplete Public BCM-HGSC NIH-NHGRI Highlander, SK sarahh@bcm.tmc.edu 7665 20313 003207_GCAT 0 1x 0 0 0 454 USA Eukaryota Echinodermata Echinoidea Echinoida Strongylocentrotidae Allocentrotus EUKARYAL Allocentrotus fragilis fragile urchin Allocentrotus fragilis Gi02463 Genome incomplete Public BCM-HGSC NIH-NHGRI Highlander, SK sarahh@bcm.tmc.edu 86255 20317 003185_GCAT 0 1x 0 0 0 454 USA Eukaryota Apusomonadidae Amastigomonas Amastigomonas sp. EUKARYAL Amastigomonas sp. Amastigomonas sp. Gi02464 Genome incomplete Public BCM-HGSC NIH-NHGRI Highlander, SK sarahh@bcm.tmc.edu Origins of Multicellularity Project (OMP) 172826 20465 003186_GCAT 0 0 0 0 USA Fresh water, Marine Eukaryota Ichthyosporea Ichthyophonida Amoebidiaceae Amoebidium Amoebidium parasiticum EUKARYAL Amoebidium parasiticum Amoebidium parasiticum Gi02465 Genome incomplete Public BCM-HGSC NIH-NHGRI Highlander, SK sarahh@bcm.tmc.edu Evolutionary, Origins of Multicellularity Project (OMP) 4881 20483 003187_GCAT 0 0 0 0 USA External cuticule of Crustaceans, Amphipods, Isopods, Copepods and Insects External cuticule of Crustaceans, Amphipods, Isopods, Copepods and Insects Eukaryota Echinodermata Echinoidea Echinoida Strongylocentrotidae Strongylocentrotus EUKARYAL Strongylocentrotus purpuratus A3 A3 Sea urchin Strongylocentrotus purpuratus Gi00632 Genome incomplete Public Consortium II, BCM-HGSC Stowers Institute for Medical Research Highlander, SK sarahh@bcm.tmc.edu Evolutionary, Model organism 7668 10736 002326_GCAT 0 AAGJ02000000 Draft 8x 900000 27350 20 0 0 Sanger USA None Fresh water Eukaryota Echinodermata Echinoidea Echinoida Strongylocentrotidae Strongylocentrotus EUKARYAL Strongylocentrotus purpuratus California California Strongylocentrotus purpuratus Gi00631 Genome incomplete Public BCM-HGSC NIH-NHGRI Highlander, SK sarahh@bcm.tmc.edu Evolutionary 7668 10728 002327_GCAT 0 0 0 0 USA None Fresh water Eukaryota Arthropoda Insecta Hemiptera Aphididae Acyrthosiphon EUKARYAL Acyrthosiphon pisum LSR1 LSR1 pea aphid Acyrthosiphon pisum LSR1 Gi00989 Genome complete Public BCM-HGSC NIH-NHGRI Highlander, SK sarahh@bcm.tmc.edu Agricultural 7029 13657 002328_GCAT 0 ABLF00000000 Complete 6.2x 300000 0 4 0 Sanger USA from the clonal line LSR1.AC.F1, produced from a single generation of inbreeding of strain LSR1 from the clonal line LSR1.AC.F1, produced from a single generation of inbreeding of strain LSR1 Eukaryota Arthropoda Insecta Hemiptera Aphididae Acyrthosiphon EUKARYAL Acyrthosiphon pisum Acyrthosiphon pisum Ge00237 Genome complete Public INRA, Genoscope 7029 18025 002837_GCAT 0 Complete 40904 0 0 France Eukaryota Arthropoda Insecta Diptera Culicidae Aedes EUKARYAL Aedes albopictus forest day mosquito Aedes albopictus Gi00016 Genome incomplete Public Colorado State Univ NIH ColoState aaedbmgr@mosquito.colostate.edu Human Pathogen, Medical 7160 9552 002330_GCAT 0 0 0 3 0 0 USA Dengue fever Pathogen Eukaryota Arthropoda Insecta Diptera Culicidae Ochlerotatus EUKARYAL Aedes triseriatus Ochlerotatus triseriatus Gi00017 Genome incomplete Public Colorado State Univ NIH ColoState aaedbmgr@mosquito.colostate.edu 7162 13350 002331_GCAT 0 0 0 0 USA Eukaryota Arthropoda Insecta Diptera Culicidae Aedes EUKARYAL Aedes aegypti Aedes aegypti Ge00259 EST incomplete Public J. Craig Venter Institute 7159 10631 002860_GCAT 0 80000 0 0 USA Eukaryota Streptophyta Brassicales Brassicaceae Arabidopsis EUKARYAL Arabidopsis thaliana Arabidopsis thaliana Ge00260 EST complete Public Kazusa DNA Research Institute 3702 10721 002861_GCAT 0 Complete 12000 0 0 Japan Eukaryota Arthropoda Arachnida Ixodida Ixodidae Amblyomma EUKARYAL Amblyomma americanum Lone star tick Amblyomma americanum Ge00168 EST incomplete Public Univ of Oklahoma Roe B http://cheminfo.chem.ou.edu/faculty/bar.html 6943 9550 002332_GCAT 0 0 0 0 USA Eukaryota Arthropoda Arachnida Ixodida Ixodidae Amblyomma EUKARYAL Amblyomma variegatum Ge00169 EST incomplete Public J. Craig Venter Institute NSF TIGR tgi@tigr.org 34610 002333_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Hyracoidea Procaviidae Procavia EUKARYAL Procavia capensis cape rock hyrax Procavia capensis Gi01612 Genome incomplete Public BCM-HGSC NIH-NHGRI Highlander, SK sarahh@bcm.tmc.edu 9813 13972 002335_GCAT 0 Draft 2x 0 0 0 USA None Eukaryota Arthropoda Insecta Hymenoptera Apidae Apis EUKARYAL Apis mellifera capensis Gi00032 Genome incomplete Public BCM-HGSC USDA, NIH-NHGRI Weinstock G gweinsto@watson.wustl.edu Agricultural, Medical 7460 002336_GCAT 0 135000 0 16 0 USA None Eukaryota Arthropoda Insecta Hymenoptera Apidae Apis Apis mellifera EUKARYAL Apis mellifera ligustica Honey Bees Apis mellifera ligustica Ge00170 EST complete Public Univ of Illinois at Urbana-Champaign Robinson G http://www.life.uiuc.edu/robinson/labbios/gene.html Agricultural, Medical 7469 165 002337_GCAT 0 Complete 20000 0 16 0 0 USA None Eukaryota Arthropoda Insecta Hymenoptera Apidae Apis Apis mellifera EUKARYAL Apis mellifera scutellata Apis mellifera Gi00033 Genome incomplete Public BCM-HGSC USDA, NIH-NHGRI Weinstock G gweinsto@watson.wustl.edu Agricultural, Medical 212527 9555 002338_GCAT 0 135000 0 16 0 0 USA None Eukaryota Arthropoda Insecta Lepidoptera Nymphalidae Bicyclus EUKARYAL Bicyclus anynana Bicyclus anynana Gi01116 Genome-Regions incomplete Public DOE Joint Genome Institute DOE 110368 13891 002339_GCAT 0 0 0 0 BAC clones USA Eukaryota Arthropoda Insecta Lepidoptera Nymphalidae Bicyclus EUKARYAL Bicyclus anynana Bicyclus anynana Ge00238 EST complete Public Turku Centre for Biotechnology, Univ of California, Irvine 110368 18027 002839_GCAT 0 Complete 9903 0 0 USA Eukaryota Arthropoda Insecta Lepidoptera Bombycidae Bombyx EUKARYAL Bombyx mori Dazao Dazao Bombyx mori Ge00171 EST incomplete Public NIAS, Japan Biotechnological, Protein production 7091 12261 002341_GCAT 0 35000 0 28 0 0 China None Eukaryota Arthropoda Insecta Diptera Culicidae Culex EUKARYAL Culex pipiens quinquefasciatus JHB JHB southern house mosquito Culex quinquefasciatus JHB Gi01224 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu 7176 18751 002342_GCAT 0 AAWU00000000 Draft 0 0 0 Sanger USA Eukaryota Arthropoda Insecta Diptera Culicidae Culex EUKARYAL Culex pipiens Gi00184 Genome incomplete Public Colorado State Univ NIH ColoState aaedbmgr@mosquito.colostate.edu 7175 002343_GCAT 0 540000 0 3 0 0 USA Eukaryota Arthropoda Insecta Coleoptera Chrysomelidae Diabrotica EUKARYAL Diabrotica Corn Rootworm Ge00172 EST incomplete Public Univ of Illinois at Urbana-Champaign Gray ME http://www.ag.uiuc.edu/~stratsoy/expert/gray.html 50385 002344_GCAT 0 0 0 0 USA Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila EUKARYAL Drosophila ananassae AABBg1, TSC#14024-0371.13 AABBg1, TSC#14024-0371.13 Drosophila ananassae TSC#14024-0371.13 Gc00800 Gi00201 Genome Complete and Published Public Agencourt Bioscience NIH-NHGRI 2007-01-17 Nature 450, 203-18 7217 12651 002345_GCAT 0 AAPP01000000 Complete Level 2: High-Quality Draft 8.9x 176000 15276 4 0 0 Sanger USA embryos of Tucson stock center strain number 14024-0371.13 embryos of Tucson stock center strain number 14024-0371.13 Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila Drosophila auraria EUKARYAL Drosophila auraria Gi01793 Genome incomplete Public RIKEN MEXT 47315 002346_GCAT 0 0 0 0 Japan Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila Drosophila erecta EUKARYAL Drosophila erecta TSC#14021-0224.01 TSC#14021-0224.01 Drosophila erecta TSC#14021-0224.01 Gc00801 Gi00202 Genome Complete and Published Public Agencourt Bioscience NIH-NHGRI 2007-01-17 Nature 450, 203-18 7220 12661 002347_GCAT 0 AAPQ01000000 Complete Level 2: High-Quality Draft 10.6x 134000 15324 4 0 0 Sanger USA embryos of Tucson stock center strain number 14021-0224.01 embryos of Tucson stock center strain number 14021-0224.01 Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila EUKARYAL Drosophila grimshawi G1, TSC#15287-2541.00 G1, TSC#15287-2541.00 Drosophila grimshawi TSC#15287-2541.00 Gc00802 Gi00203 Genome Complete and Published Public Agencourt Bioscience NIH-NHGRI 2007-01-17 Nature 450, 203-18 7222 12678 002348_GCAT 0 AAPT01000000 Complete Level 2: High-Quality Draft 7.9x 138000 15270 4 0 0 Sanger USA embryos of Tucson stock center number 15287-2541.00 USA Maui, Hawaii Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila EUKARYAL Drosophila hydei Drosophila hydei Gi01932 Genome incomplete Public Clemson Univ 7224 12782 002556_GCAT 0 0 0 0 USA Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila EUKARYAL Drosophila mojavensis TSC#15081-1352.22 TSC#15081-1352.22 Drosophila mojavensis TSC#15081-1352.22 Gi00204 Genome incomplete Public Agencourt Bioscience NIH-NHGRI 7230 12682 002349_GCAT 0 AAPU01000000 Draft 8x 0 0 4 0 0 Sanger USA Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila Drosophila persimilis EUKARYAL Drosophila persimilis MSH-3, 14011-0111.49 MSH-3, 14011-0111.49 Drosophila persimilis 14011-0111.49 Gc00804 Gi00205 Genome Complete and Published Public Broad Institute NIH-NHGRI 2007-01-17 Nature 450, 203-18 7234 12705 002350_GCAT 0 AAIZ01000000 Complete Level 2: High-Quality Draft 4.1x 138000 17325 4 0 0 Sanger USA embryos of Tucson stock center strain number 14011-0111.49 USA embryos of Tucson stock center strain number 14011-0111.49 Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila EUKARYAL Drosophila sechellia Rob3c, 14021-0248.25 Rob3c, 14021-0248.25 Drosophila sechellia 14021-0248.25 Gc00803 Gi00207 Genome Complete and Published Public Broad Institute NIH-NHGRI 2007-01-17 Nature 450, 203-18 7238 12711 002352_GCAT 0 AAKO01000000 Complete Level 2: High-Quality Draft 4.9x 115000 16884 4 0 0 Sanger USA embryos of Tucson stock center strain number 14021-0248.25 embryos of Tucson stock center strain number 14021-0248.25 Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila Drosophila simulans EUKARYAL Drosophila simulans sim6, TSC#14021-0251.194 sim6, TSC#14021-0251.194 Drosophila simulans SIM6 Gi00208 Genome incomplete Public Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth 7240 17569 002353_GCAT 0 AASW01000000 Draft 1x 0 0 4 0 0 Sanger USA adult flies of Tucson stock center strain number 14021-0251.194 adult flies of Tucson stock center strain number 14021-0251.194 Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila Drosophila simulans EUKARYAL Drosophila simulans white501, TSC#14021-0251.195 white501, TSC#14021-0251.195 Drosophila simulans white501 Gi01939 Genome incomplete Public Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth 7240 12464 002563_GCAT 0 AAGH01000000 Draft 2.9x 111000 15983 4 0 0 Sanger USA embryos from the Tucson stock center strain number 14021-0251.195 embryos from the Tucson stock center strain number 14021-0251.195 Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila Drosophila simulans EUKARYAL Drosophila simulans New Caledonia 48S, TSC#14021-0251.198 New Caledonia 48S, TSC#14021-0251.198 Drosophila simulans New Caledonia 48S Gi01938 Genome incomplete Public Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth 7240 17565 002562_GCAT 0 AASU01000000 Draft 1x 0 0 4 0 0 Sanger USA adult flies of Tucson stock center strain number 14021-0251.198 adult flies of Tucson stock center strain number 14021-0251.198 Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila Drosophila simulans EUKARYAL Drosophila simulans sim4, TSC#14021-0251.216 sim4, TSC#14021-0251.216 Drosophila simulans SIM4 Gi01937 Genome incomplete Public Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth 7240 17567 002561_GCAT 0 AASV01000000 Draft 1x 0 0 4 0 0 Sanger USA adult flies of Tucson stock center strain number 14021-0251.216 adult flies of Tucson stock center strain number 14021-0251.216 Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila Drosophila simulans EUKARYAL Drosophila simulans c1674, TSC#14021-0251.199 c1674, TSC#14021-0251.199 Drosophila simulans C167.4 Gi01936 Genome incomplete Public Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth 7240 17557 002560_GCAT 0 AASR01000000 Draft 1x 0 0 4 0 0 Sanger USA adult flies of Tucson stock center strain number 14021-0251.199 adult flies of Tucson stock center strain number 14021-0251.199 Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila Drosophila simulans EUKARYAL Drosophila simulans md106TS, TSC#14021-0251.196 md106TS, TSC#14021-0251.196 Drosophila simulans MD106TS Gi01935 Genome incomplete Public Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth 7240 17559 002559_GCAT 0 AASS01000000 Draft 1x 0 0 4 0 0 Sanger USA adult flies of Tucson stock center strain number 14021-0251.196 adult flies of Tucson stock center strain number 14021-0251.196 Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila Drosophila simulans EUKARYAL Drosophila simulans md199, TSC#14021-0251.197 md199, TSC#14021-0251.197 Drosophila simulans MD199S Gi01934 Genome incomplete Public Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth 7240 17563 002558_GCAT 0 AAST01000000 Draft 1x 0 0 4 0 0 Sanger USA adult flies of Tucson stock center strain number 14021-0251.197 adult flies of Tucson stock center strain number 14021-0251.197 Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila Drosophila simulans EUKARYAL Drosophila simulans mosaic-1.0 mosaic-1.0 Drosophila simulans mosaic Gi01933 Genome incomplete Public Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth 7240 18237 002557_GCAT 0 Draft 4x 0 0 4 0 0 Sanger USA Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila EUKARYAL Drosophila virilis TSC#15010-1051.87 TSC#15010-1051.87 Drosophila virilis TSC#15010-1051.87 15010-1051.87 Gc00805 Gi00209 Genome Complete and Published Public Agencourt Bioscience NIH-NHGRI 2007-01-17 Nature 450, 203-18 7244 12688 002354_GCAT 0 AANI01000000 Complete Level 2: High-Quality Draft 8x 172000 14680 4 0 0 Sanger USA eggs and embryos of Tucson stock center strain number 15010-1051.87 eggs and embryos of Tucson stock center strain number 15010-1051.87 Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila Drosophila willistoni EUKARYAL Drosophila willistoni Gd-H4-1, TSC#14030-0811.24 Gd-H4-1, TSC#14030-0811.24 Drosophila willistoni TSC#14030-0811.24 14030-0811.24 Gc00806 Gi00210 Genome Complete and Published Public J. Craig Venter Institute NIH-NHGRI 2007-01-17 Nature 450, 203-18 7260 12664 002355_GCAT 0 AAQB01000000 Complete Level 2: High-Quality Draft 8.4x 187000 15816 4 0 0 Sanger USA eggs and embryos of Tucson stock center strain number 14030-0811.24 eggs and embryos of Tucson stock center strain number 14030-0811.24 Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila EUKARYAL Drosophila silvestris Drosophila silvestris Gi01117 Genome incomplete Public CUGI/AGI NIH-NHGRI 47010 12787 002356_GCAT 0 0 0 0 USA Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila Drosophila repleta EUKARYAL Drosophila repleta Drosophila repleta Gi01118 Genome incomplete Public CUGI/AGI NIH-NHGRI 30043 12773 002357_GCAT 0 0 0 0 USA Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila Drosophila novamexicana EUKARYAL Drosophila novamexicana Drosophila novamexicana Gi01119 Genome incomplete Public CUGI/AGI NIH-NHGRI 47314 12765 002358_GCAT 0 0 0 0 USA Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila EUKARYAL Drosophila mimica Drosophila mimica Gi01120 Genome incomplete Public CUGI/AGI NIH-NHGRI 7270 12790 002359_GCAT 0 0 0 0 USA Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila Drosophila miranda EUKARYAL Drosophila miranda Drosophila miranda Gi01121 Genome incomplete Public CUGI/AGI NIH-NHGRI 7229 12759 002360_GCAT 0 0 0 0 USA Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila Drosophila mercatorum EUKARYAL Drosophila mercatorum Drosophila mercatorum Gi01130 Genome incomplete Public CUGI/AGI NIH-NHGRI 7253 12776 002361_GCAT 0 0 0 0 USA Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila Drosophila littoralis EUKARYAL Drosophila littoralis Drosophila littoralis Gi01131 Genome incomplete Public CUGI/AGI NIH-NHGRI 47316 12771 002362_GCAT 0 0 0 0 USA Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila Drosophila americana EUKARYAL Drosophila americana Drosophila americana Gi01132 Genome incomplete Public CUGI/AGI NIH-NHGRI 40366 12763 002363_GCAT 0 0 0 0 USA Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila Drosophila equinoxialis EUKARYAL Drosophila equinoxialis Drosophila equinoxialis Gi01133 Genome incomplete Public CUGI/AGI NIH-NHGRI 46790 12761 002364_GCAT 0 0 0 0 USA Eukaryota Arthropoda Insecta Diptera Drosophilidae Drosophila Drosophila yakuba EUKARYAL Drosophila yakuba Tai18E2, TSC#14021-0261.01 Tai18E2, TSC#14021-0261.01 Drosophila yakuba Gc00807 Gi00211 Genome Complete and Published Public Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth 2007-01-17 Nature 450, 203-18 7245 12265 002365_GCAT 0 AAEU02000000 Complete Level 2: High-Quality Draft 9.1x 127000 16423 4 0 0 Sanger USA eggs and embryos of Tucson stock center strain number 14021-0261.01 eggs and embryos of Tucson stock center strain number 14021-0261.01 Eukaryota Arthropoda Malacostraca Decapoda Portunidae Callinectes EUKARYAL Callinectes sapidus Blue crab Callinectes sapidus Ge00173 EST incomplete Public MDIBL Towle DW dtowle@mdibl.org 6763 13026 002366_GCAT 0 0 0 0 USA Eukaryota Arthropoda Malacostraca Decapoda Ocypodidae Celuca EUKARYAL Celuca pugilator Atlantic sand fiddler crab Ge00174 EST incomplete Public Univ of Oklahoma NSF Roe B broe@ou.edu 6772 002367_GCAT 0 0 0 0 USA Eukaryota Arthropoda Branchiopoda Diplostraca Daphniidae Daphnia EUKARYAL Daphnia pulex Log50 Log50 Water flea Daphnia pulex Gi00188 Genome incomplete Public DOE Joint Genome Institute, Daphnia Genomics Consortium DOE Environmental 6669 12756 002368_GCAT 0 8x 0 0 0 Sanger USA None Fresh water Eukaryota Arthropoda Branchiopoda Diplostraca Daphniidae Daphnia Daphnia magna EUKARYAL Daphnia magna Water flea Daphnia magna Gi00187 Genome incomplete Public Daphnia Genomics Consortium 35525 13036 002369_GCAT 0 0 0 0 USA Eukaryota Arthropoda Malacostraca Decapoda Penaeidae Fenneropenaeus EUKARYAL Fenneropenaeus chinensis Ge00175 EST incomplete Public Chinese Institute of Oceanology Xiang J jhxiang@ms.qdio.ac.cn 139456 002370_GCAT 0 0 0 0 China Eukaryota Chordata Appendicularia Oikopleuridae Oikopleura Oikopleura dioica EUKARYAL Oikopleura dioica Oikopleura dioica Gi00418 Genome incomplete Public SARS, Norway, Genoscope, Max Planck Institute Chourrout, D http://www.sars.no/group1.html 34765 12901 002371_GCAT 0 10x 72000 0 0 Sanger International Eukaryota Arthropoda Insecta Lepidoptera Noctuidae Helicoverpa EUKARYAL Helicoverpa armigera Gi01794 Genome-Regions incomplete Public Genoscope Choisne N choisne@genoscope.cns.fr Agricultural 29058 002372_GCAT 0 0 0 0 France Eukaryota Arthropoda Insecta Lepidoptera Noctuidae Spodoptera EUKARYAL Spodoptera frugiperda Fall armyworm Spodoptera frugiperda Gi01795 Genome-Regions incomplete Public Genoscope Choisne N choisne@genoscope.cns.fr Agricultural 7108 18093 002373_GCAT 0 0 0 0 France Eukaryota Streptophyta Liliopsida Poales Poaceae Triticum EUKARYAL Triticum monococcum One-grained wheat Triticum monococcum Gi01796 Genome-Regions incomplete Public Genoscope Samain S samain@genoscope.cns.fr Agricultural 4568 13344 002374_GCAT 0 5700 0 0 France Eukaryota Streptophyta Liliopsida Poales Poaceae Aegilops EUKARYAL Triticum (Aegilops) tauschii Aegilops tauschii Gi01797 Genome-Regions incomplete Public Genoscope Samain S samain@genoscope.cns.fr Agricultural 37682 15519 002375_GCAT 0 0 0 0 France Eukaryota Streptophyta Liliopsida Poales Poaceae Triticum Triticum turgidum EUKARYAL Triticum turgidum durum Durum wheat Gi01798 Genome-Regions incomplete Public Genoscope Samain S samain@genoscope.cns.fr Agricultural 4567 002376_GCAT 0 0 0 0 France Eukaryota Streptophyta Liliopsida Poales Poaceae Triticum EUKARYAL Triticum aestivum Bread wheat Gi01799 Genome-Regions incomplete Public Genoscope CNRG Samain S samain@genoscope.cns.fr Agricultural 4565 002377_GCAT 0 0 0 0 France Eukaryota Streptophyta Liliopsida Poales Poaceae Triticum EUKARYAL Triticum aestivum Bread wheat Triticum aestivum Gi01800 Genome incomplete Public International Consortium Agricultural 4565 15528 002378_GCAT 0 16000000 0 21 0 France Eukaryota Arthropoda Insecta Diptera Glossinidae Glossina Glossina morsitans EUKARYAL Glossina morsitans Gi00276 Genome incomplete Public SANBI 37546 002379_GCAT 0 600000 0 0 International Eukaryota Arthropoda Insecta Diptera Glossinidae Glossina Glossina morsitans EUKARYAL Glossina morsitans morsitans morsitans Glossina morsitans morsitans Ge00176 EST incomplete Public Sanger Institute, Univ of Wales Bangor Wellcome Trust 37546 194 002380_GCAT 0 21247 0 0 United Kingdom Eukaryota Arthropoda Insecta Lepidoptera Noctuidae Heliothis EUKARYAL Heliothis virescens Tobacco budworm Gi00297 Genome incomplete Proprietary BAYER, Exelixis Inc, Genoptera LLC 7102 002381_GCAT 0 Complete 0 0 0 USA Eukaryota Arthropoda Arachnida Ixodida Ixodidae Ixodes EUKARYAL Ixodes scapularis Wikel Wikel blacklegged tick Ixodes scapularis Wikel colony Gi01225 Genome incomplete Public Broad Institute, J. Craig Venter Institute NIH-NIAID MSC msc@broad.mit.edu Medical 6945 16232 002382_GCAT 0 ABJB010000000 Draft 6x 2100000 0 0 Sanger USA Vector of Pathogens Eukaryota Arthropoda Insecta Hymenoptera Pteromalidae Nasonia EUKARYAL Nasonia vitripennis SymAX SymAX Nasonia vitripennis AsymCX Gi00990 Genome complete Public BCM-HGSC NIH-NHGRI Highlander, SK sarahh@bcm.tmc.edu Agricultural, Pest control 7425 13660 002383_GCAT 0 AAZX00000000 Complete 6x 330000 0 0 Sanger USA Eukaryota Arthropoda Insecta Hymenoptera Pteromalidae Nasonia Nasonia giraulti EUKARYAL Nasonia giraulti Nasonia giraulti Gi01109 Genome-Regions incomplete Public BCM-HGSC NIH-NHGRI Highlander, SK sarahh@bcm.tmc.edu 7426 20223 002384_GCAT 0 1x 0 0 0 SGS USA Eukaryota Arthropoda Insecta Hymenoptera Pteromalidae Nasonia Nasonia longicornis EUKARYAL Nasonia longicornis Nasonia longicornis Gi01110 Genome-Regions incomplete Public BCM-HGSC NIH-NHGRI Highlander, SK sarahh@bcm.tmc.edu 7427 20225 002385_GCAT 0 1x 0 0 0 SGS USA Eukaryota Arthropoda Malacostraca Amphipoda Ischyroceridae Jassa Jassa slatteryi EUKARYAL Jassa slatteryi Ge00177 EST incomplete Public DOE Joint Genome Institute, Univ of California, Berkeley DOE Bruce D microbes@cuba.jgi-psf.org 429038 002386_GCAT 0 0 0 0 USA Eukaryota Arthropoda Malacostraca Amphipoda Hyalidae Parhyale Parhyale hawaiiensis EUKARYAL Parhyale hawaiiensis Ge00178 EST incomplete Public DOE Joint Genome Institute, Univ of California, Berkeley DOE Bruce D microbes@cuba.jgi-psf.org 280677 002387_GCAT 0 2000000 0 0 USA Eukaryota Arthropoda Insecta Phthiraptera Pediculidae Pediculus Pediculus humanus EUKARYAL Pediculus humanus corporis USDA USDA human body louse Pediculus humanus corporis USDA Gi01292 Genome incomplete Public J. Craig Venter Institute Medical 121224 16223 002388_GCAT 0 AAZO00000000 Draft 8x 112000 11198 0 Sanger USA Eukaryota Arthropoda Insecta Phthiraptera Pediculidae Pediculus Pediculus humanus EUKARYAL Pediculus humanus corporis human body louse Pediculus humanus corporis Ge00232 EST complete Public Univ of Massachusetts, Purdue Univ NIH Pittendrigh B http://www.entm.purdue.edu/pittendrigh_lab/ Medical 121224 18879 002824_GCAT 0 Complete 20000 0 0 USA Eukaryota Arthropoda Malacostraca Decapoda Petrolisthes EUKARYAL Petrolisthes cinctipes Ge00179 EST incomplete Public SFSU, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 88211 002389_GCAT 0 2000000 0 0 USA Eukaryota Arthropoda Insecta Hemiptera Reduviidae Rhodnius Rhodnius prolixus EUKARYAL Rhodnius prolixus Rhodnius prolixus Gi02459 Genome incomplete Public Washington Univ NIH-NHGRI Spieth J http://genome.wustl.edu/Bio/email_data.cgi?staff=John%20Spieth 13249 13648 002390_GCAT 0 8x 670000 0 11 0 0 Sanger USA Eukaryota Arthropoda Arachnida Tetranychidae Tetranychus EUKARYAL Tetranychus urticae London London Two-spotted spider mite Gi01574 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural, Pest control, Biotechnological 32264 002391_GCAT 0 75000 0 0 USA None Eukaryota Arthropoda Insecta Coleoptera Tenebrionidae Tribolium EUKARYAL Tribolium castaneum Georgia GA2 Georgia GA2 Red flour beetle Tribolium castaneum Georgia GA2 Gc00756 Gi00664 Genome Complete and Published Public BCM-HGSC NIH-NHGRI Richards S stephenr@bcm.tmc.edu 2008-03-23 Nature 452, 949-55 7070 12540 002392_GCAT 0 NC_007416-25 Complete 7.3x 152000 16404 10 0 33 Sanger USA None Eukaryota Arthropoda Malacostraca Decapoda Nephropidae Homarus EUKARYAL Homarus americanus American lobster Homarus americanus Ge00180 EST incomplete Public MDIBL Towle DW dtowle@mdibl.org 6706 12977 002393_GCAT 0 0 0 0 USA Eukaryota Arthropoda Malacostraca Decapoda Penaeidae Litopenaeus EUKARYAL Litopenaeus vannamei Pacific white shrimp Litopenaeus vannamei Ge00181 EST incomplete Public Univ Federal de Sao Carlos CNPq Galetti PM galettip@power.ufscar.br 6689 12975 002394_GCAT 0 0 0 0 Brazil Eukaryota Chordata Actinopterygii Gasterosteiformes Gasterosteidae Gasterosteus EUKARYAL Gasterosteus aculeatus Bear Paw Bear Paw three spined stickleback Gasterosteus aculeatus Gi00269 Genome incomplete Public Broad Institute NIH-NHGRI 69293 13579 002395_GCAT 0 AANH01000000 Draft 9x 680000 0 0 Sanger USA Freshwater lake Freshwater lake Eukaryota Tardigrada Eutardigrada Parachela Hypsibiidae Hypsibius Hypsibius dujardini EUKARYAL Hypsibius dujardini Hypsibius dujardini Gi02471 Genome incomplete Public Broad Institute NIH-NHGRI 232323 20355 003194_GCAT 0 5x 70000 0 0 Sanger USA Eukaryota Arthropoda Malacostraca Amphipoda Ischyroceridae Jassa Jassa slatteryi EUKARYAL Jassa slatteryi Jassa slatteryi Gi02472 Genome incomplete Public Broad Institute NIH-NHGRI 429038 20517 003196_GCAT 0 6x 0 0 0 Sanger USA Eukaryota Tardigrada Eutardigrada Parachela Hypsibiidae Hypsibius Hypsibius dujardini EUKARYAL Hypsibius dujardini Hypsibius dujardini Ge00285 EST incomplete Public Broad Institute NIH-NHGRI 232323 20353 003195_GCAT 0 5235 0 0 USA Eukaryota Chordata Actinopterygii Siluriformes Ictaluridae Ictalurus EUKARYAL Ictalurus punctatus Catfish Ictalurus punctatus Ge00182 EST incomplete Public Auburn Univ, J. Craig Venter Institute TIGR tgi@tigr.org 7998 12439 002396_GCAT 0 44767 0 0 USA Eukaryota Chordata Actinopterygii Siluriformes Ictaluridae Ictalurus EUKARYAL Ictalurus punctatus Catfish Gi01801 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 7998 002397_GCAT 0 0 0 0 USA Eukaryota Chordata Chondrichthyes Squaliformes Squalidae Squalus EUKARYAL Squalus acanthias Dogfish Squalus acanthias Gi01802 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 7797 13347 002398_GCAT 0 0 0 0 USA Eukaryota Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus EUKARYAL Callorhinchus milii IMCB2004 IMCB2004 Elephantfish Callorhinchus milii Gi01928 Genome-Regions incomplete Public IMCB, J. Craig Venter Institute 7868 18361 002552_GCAT 0 AAVX00000000 Draft 1.4x 910000 0 0 Sanger Singapore Testis Testis Eukaryota Chordata Chondrichthyes Orectolobiformes Ginglymostomatidae Ginglymostoma EUKARYAL Ginglymostoma cirratum Nurse shark Gi01803 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 7801 002399_GCAT 0 0 0 0 USA Eukaryota Chordata Actinopterygii Tetraodontiformes Tetraodontidae Sphoeroides EUKARYAL Sphoeroides nephelus Pupperfish Gi01804 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 39110 002400_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Monotremata Tachyglossidae Tachyglossus EUKARYAL Tachyglossus aculeatus Australian echidna Gi01805 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 9261 002401_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Cervidae Muntiacus Muntiacus muntjak EUKARYAL Muntiacus muntjak vaginalis Gi01806 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 9887 002402_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Primates Atelidae Ateles EUKARYAL Ateles geoffroyi Central American spider monkey Gi01807 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 9509 002403_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Primates Cercopithecidae Colobus EUKARYAL Colobus guereza Guereza Gi01808 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 33548 002404_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Primates Aotidae Aotus EUKARYAL Aotus nancymaae Ma's night monkey Gi01809 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 37293 002405_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Primates Cercopithecidae Chlorocebus EUKARYAL Cercopithecus (Chlorocebus) aethiops African green monkey Gi01810 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 9534 002406_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Carnivora Felidae Neofelis EUKARYAL Neofelis nebulosa Leopard Gi01811 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 61452 002407_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Carnivora Mustelidae Mustela Mustela putorius EUKARYAL Mustela putorius furo Domestic ferret Gi01812 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 9669 002408_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Chiroptera Pteropodidae Pteropus EUKARYAL Pteropus vampyrus large flying fox Gi01907 Genome-Regions incomplete Public BCM-HGSC, NISC-NIH NIH-NHGRI Highlander, SK sarahh@bcm.tmc.edu 132908 002540_GCAT 0 2x 0 0 0 Sanger USA Eukaryota Chordata Mammalia Cetacea Delphinidae Tursiops EUKARYAL Tursiops truncatus bottlenosed dolphin Tursiops truncatus Gi02181 Genome-Regions incomplete Public BCM-HGSC, NISC-NIH NIH-NHGRI Highlander, SK sarahh@bcm.tmc.edu 9739 20367 002878_GCAT 0 2x 0 0 0 Sanger USA Eukaryota Chordata Mammalia Rodentia Heteromyidae Dipodomys EUKARYAL Dipodomys ordii Ord's kangaroo rat Dipodomys ordii Gi02183 Genome-Regions incomplete Public BCM-HGSC, NISC-NIH NIH-NHGRI Highlander, SK sarahh@bcm.tmc.edu 10020 20385 002880_GCAT 0 2x 0 0 0 Sanger USA Eukaryota Chordata Mammalia Primates Tarsiidae Tarsius EUKARYAL Tarsius syrichta Philippine tarsier Tarsius syrichta Gi02182 Genome-Regions incomplete Public Washington Univ, NISC-NIH NIH-NHGRI 9478 20339 002879_GCAT 0 2x 0 0 0 Sanger USA Eukaryota Chordata Mammalia Camelidae Lama EUKARYAL Lama glama Gi02184 Genome-Regions incomplete Public Washington Univ, NISC-NIH NIH-NHGRI 9844 002881_GCAT 0 2x 0 0 0 Sanger USA Eukaryota Chordata Mammalia Dermoptera Cynocephalidae Cynocephalus EUKARYAL Cynocephalus volans Flying lemur Gi02185 Genome-Regions incomplete Public NISC-NIH, Washington Univ NIH-NHGRI Warren W 110931 002882_GCAT 0 2x 0 0 0 Sanger USA Eukaryota Chordata Ascidiacea Enterogona Cionidae Ciona Ciona intestinalis EUKARYAL Ciona intestinalis Ciona intestinalis Ge00183 EST incomplete Public National Institute of Genetics, Japan, Kyoto Univ, J. Craig Venter Institute TIGR tgi@tigr.org Evolutionary 7719 12435 002409_GCAT 0 90000 0 14 0 0 International None Fresh water Eukaryota Chordata Ascidiacea Enterogona Cionidae Ciona Ciona savignyi EUKARYAL Ciona savignyi Ciona savignyi Gi00152 Genome complete Public Broad Institute NIH-NHGRI MIT annotation-info@genome.wi.mit.edu Evolutionary 51511 1435 002410_GCAT 0 AACT00000000 Draft Level 2: High-Quality Draft 13x 180000 15000 0 Sanger USA None Fresh water Eukaryota Chordata Ascidiacea Stolidobranchia Pyuridae Halocynthia Halocynthia roretzi EUKARYAL Halocynthia roretzi Ge00184 EST incomplete Public Kyoto Univ MEXT Makabe KW kwmakabe@ascidian.zool.kyoto-u.ac.jp 7729 002411_GCAT 0 0 0 0 Japan Eukaryota Chordata Chondrichthyes Rajiformes Rajidae Leucoraja EUKARYAL Leucoraja erinacea Leucoraja erinacea Gi00991 Genome-Regions incomplete Public Washington Univ, NISC-NIH NIH-NHGRI 7782 13631 002412_GCAT 0 0 0 0 USA Eukaryota Chordata Chondrichthyes Rajiformes Rajidae Leucoraja EUKARYAL Leucoraja erinacea Leucoraja erinacea Ge00229 EST incomplete Public Mount Desert Island Biological Lab 7782 13346 002817_GCAT 0 0 0 0 USA Eukaryota Chordata Chondrichthyes Rajiformes Rajidae Leucoraja EUKARYAL Leucoraja erinacea Ge00228 EST incomplete Public Medical Univ of South Carolina 7782 13034 002816_GCAT 0 0 0 0 USA Eukaryota Chordata Actinopterygii Salmoniformes Salmonidae Oncorhynchus EUKARYAL Oncorhynchus mykiss Rainbow trout Oncorhynchus mykiss Ge00185 EST incomplete Public J. Craig Venter Institute, NCCCWA TIGR tgi@tigr.org 8022 12370 002413_GCAT 0 0 0 0 USA Eukaryota Chordata Actinopterygii Beloniformes Adrianichthyidae Oryzias EUKARYAL Oryzias latipes HNI HNI Japanese Medaka Oryzias latipes HNI Gi01531 Genome incomplete Public National Institute of Genetics, Japan 8090 19569 002414_GCAT 0 BAAE00000000 Draft Level 2: High-Quality Draft 700000 20141 48 0 0 Sanger Japan Eukaryota Chordata Actinopterygii Beloniformes Adrianichthyidae Oryzias EUKARYAL Oryzias latipes Hd-rR Hd-rR Japanese Medaka Oryzias latipes Hd-rR Gi02165 Genome incomplete Public National Institute of Genetics, Japan 8090 16702 002823_GCAT 0 BAAF00000000 Draft Level 2: High-Quality Draft 700000 20141 48 0 0 Sanger Japan Eukaryota Chordata Actinopterygii Beloniformes Adrianichthyidae Oryzias EUKARYAL Oryzias latipes Japanese medaka Ge00186 EST incomplete Public National Institute of Genetics, Japan, J. Craig Venter Institute TIGR tgi@tigr.org 8090 002415_GCAT 0 0 0 0 International Eukaryota Chordata Actinopterygii Perciformes Cichlidae Oreochromis EUKARYAL Oreochromis niloticus Tilapia Oreochromis niloticus Gi00419 Genome incomplete Public Univ of New Hampshire 8128 12436 002416_GCAT 0 0 0 0 USA Eukaryota Chordata Petromyzontiformes Petromyzontidae Petromyzon EUKARYAL Petromyzon marinus Sea lamprey Petromyzon marinus Gi00758 Genome incomplete Public Washington Univ NIH-NHGRI Clifton S http://genome.wustl.edu/Bio/email_data.cgi?staff=Sandra%20Clifton 7757 12754 002417_GCAT 0 0 0 0 USA Eukaryota Chordata Actinopterygii Salmoniformes Salmonidae Salmo EUKARYAL Salmo salar Atlantic salmon Salmo salar Gi00529 Genome incomplete Public Genome British Columbia Genome Canada, Genome BC Koop B http://web.uvic.ca/~bioweb/people/koop.html 8030 12902 002418_GCAT 0 0 0 0 Canada Eukaryota Chordata Amphibia Caudata Ambystomatidae Ambystoma EUKARYAL Ambystoma mexicanum Axolotl Ambystoma mexicanum Ge00187 EST incomplete Public Colorado State Univ NSF, NIH Voss R http://www.biology.colostate.edu/Faculty/voss.htm 8296 12937 002419_GCAT 0 33000 0 0 USA Eukaryota Chordata Amphibia Caudata Ambystomatidae Ambystoma EUKARYAL Ambystoma mexicanum Ambystoma mexicanum Ge00188 EST incomplete Public Max Planck Institute, Univ of Kentucky, Scionics Habermann, B habermann@mpi-cbg.de 8296 12938 002420_GCAT 0 17000 0 0 Germany Eukaryota Chordata Amphibia Caudata Ambystomatidae Ambystoma Ambystoma tigrinum EUKARYAL Ambystoma tigrinum tigrinum Eastern tiger salamander Ambystoma tigrinum Ge00189 EST incomplete Public Univ of Kentucky 43116 12935 002421_GCAT 0 0 0 0 USA Eukaryota Chordata Amphibia Anura Pipidae Xenopus EUKARYAL Xenopus laevis African clawed frog Gi00697 Genome incomplete Public Washington Univ NIH WASHU est@watson.wustl.edu 8355 19795 002422_GCAT 0 0 0 0 USA Eukaryota Chordata Amphibia Anura Pipidae Xenopus EUKARYAL Xenopus laevis African clawed frog Ge00267 EST incomplete Public National Institute for Basic Biology NBP http://www.shigen.nig.ac.jp/xenopus/contact/contact.jsp 8355 002869_GCAT 0 205432 0 0 Japan Eukaryota Chordata Amphibia Anura Pipidae Xenopus EUKARYAL Xenopus tropicalis western clawed frog Ge00268 EST incomplete Public National Institute for Basic Biology NBP http://www.shigen.nig.ac.jp/xenopus/contact/contact.jsp 8364 002870_GCAT 0 59893 0 0 Japan Eukaryota Chordata Amphibia Anura Pipidae Xenopus EUKARYAL Xenopus tropicalis Silurana Ge00190 EST complete Public Sanger Institute, Wellcome CRC Institute Contact http://www.sanger.ac.uk/Projects/X_tropicalis/team.shtml 8364 002423_GCAT 0 55000 0 0 United Kingdom Eukaryota Chordata Amphibia Anura Pipidae Xenopus EUKARYAL Xenopus tropicalis Xenopus (Silurana) tropicalis Gi00722 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D PMRichardson@lbl.gov 8364 12348 002424_GCAT 0 8x 0 0 0 Sanger USA Eukaryota Chordata Aves Apterygiformes Apterygidae Apteryx EUKARYAL Apteryx australis Kiwi Apteryx australis Ge00191 EST incomplete Proprietary NZGC Lambert d D.M.Lambert@massey.ac.nz 8822 12704 002425_GCAT 0 0 0 0 New Zealand Eukaryota Chordata Aves Ciconiiformes Cathartidae Gymnogyps EUKARYAL Gymnogyps californianus California condor Gymnogyps californianus Gi01813 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 33616 19591 002427_GCAT 0 0 0 0 USA Eukaryota Chordata Aves Galliformes Phasianidae Meleagris EUKARYAL Meleagris gallopavo Turkey Gi01814 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 9103 002428_GCAT 0 0 0 0 USA Eukaryota Chordata Aves Casuariiformes Dromaiidae Dromaius EUKARYAL Dromaius novaehollandiae Emu Dromaius novaehollandiae Gi01815 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 8790 10826 002429_GCAT 0 0 0 0 USA Eukaryota Chordata Aves Galliformes Phasianidae Gallus EUKARYAL Gallus gallus Gallus gallus Ge00192 EST incomplete Public Univ of Delaware, J. Craig Venter Institute TIGR tgi@tigr.org 9031 10804 002430_GCAT 0 0 0 0 USA Eukaryota Chordata Aves Galliformes Phasianidae Meleagris EUKARYAL Meleagris gallopavo Turkey Gi02452 Genome incomplete Public Tuskegee Univ, Univ of Minnesota 9103 002431_GCAT 0 0 0 0 USA Eukaryota Chordata Aves Passeriformes Estrildidae Taeniopygia EUKARYAL Taeniopygia guttata Black17, Male Black17, Male Zebra Finch Taeniopygia guttata Gi01483 Genome incomplete Public Washington Univ NIH-NHGRI Warren W http://genome.wustl.edu/Bio/email_data.cgi?staff=Wes%20Warren 59729 17289 002432_GCAT 0 ABQF01000000 Draft 6x 0 0 0 Sanger USA Australia Australia Australia Eukaryota Chordata Mammalia Insectivora Erinaceidae Atelerix EUKARYAL Atelerix albiventris four-toed hedgehog Atelerix albiventris Gi01122 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 9368 13684 002433_GCAT 0 0 0 24 0 0 Clone-based USA Deserts of southern Africa southern Africa Desert Soil Eukaryota Chordata Mammalia Bovidae Bos EUKARYAL Bos indicus Ge00194 EST incomplete Public ESALQ/USP 9915 002434_GCAT 0 0 0 0 Brazil Eukaryota Chordata Mammalia Bovidae Bos EUKARYAL Bos taurus Cow Bos taurus Ge00195 EST incomplete Public Univ of Illinois at Urbana-Champaign USDA Lewin HA http://www.biotech.uiuc.edu/people/harris.htm 9913 12291 002435_GCAT 0 13000 0 0 USA Eukaryota Chordata Mammalia Bovidae Bos EUKARYAL Bos taurus Cow Bos taurus Ge00196 EST incomplete Public USDA, J. Craig Venter Institute USDA TIGR tgi@tigr.org 9913 17371 002436_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Bovidae Bos EUKARYAL Bos taurus L1 Dominette 01449 L1 Dominette 01449 Bos taurus Gc01016 Gi00086 Genome Complete and Published Public International Collaboration, BCM-HGSC USDA, NIH-NHGRI Worley KC kworley@bcm.edu 2009-04-24 Science 324, 522-8 9913 12555 002437_GCAT 0 AAFC00000000 Complete Level 2: High-Quality Draft 7.1x 1740000 22000 30 0 0 Sanger International White blood cells from L1 Dominette 01449 White blood cells from L1 Dominette 01449 Eukaryota Chordata Mammalia Bovidae Bos EUKARYAL Bos taurus Gi00087 Genome incomplete Proprietary MetaMorphix 9913 002438_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Xenarthra Megalonychidae Choloepus EUKARYAL Choloepus hoffmanni Hoffmann's two-toed sloth Choloepus hoffmanni n/a Gi01484 Genome incomplete Public Washington Univ NIH-NHGRI Warren W http://genome.wustl.edu/Bio/email_data.cgi?staff=Wes%20Warren 9358 30809 002441_GCAT 0 ABVD01000000 Draft 2x 0 0 0 Sanger USA Female Choloepus hoffmanni Female Choloepus hoffmanni Eukaryota Chordata Mammalia Pholidota Manidae Manis Manis pentadactyla EUKARYAL Manis pentadactyla Chinese pangolin Manis pentadactyla Gi01485 Genome incomplete Public Washington Univ NIH-NHGRI Warren W http://genome.wustl.edu/Bio/email_data.cgi?staff=Wes%20Warren 143292 20331 002442_GCAT 0 2x 0 0 0 Sanger USA Eukaryota Chordata Mammalia Cetacea Delphinidae Pseudorca EUKARYAL Pseudorca crassidens False killer whale Gi01377 Genome incomplete Public RIKEN MEXT 82174 002443_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Carnivora Canidae Canis EUKARYAL Canis latrans Coyote Canis latrans Gi01123 Genome incomplete Public Broad Institute NIH-NHGRI 9614 12893 002444_GCAT 0 0 0 0 Sanger USA Eukaryota Chordata Mammalia Lagomorpha Ochotonidae Ochotona EUKARYAL Ochotona princeps NMMNH268 NMMNH268 American pika Gi01816 Genome incomplete Public Broad Institute NIH-NHGRI 9978 002445_GCAT 0 AAYZ00000000 Draft 2x 0 0 0 Sanger USA Eukaryota Chordata Mammalia Carnivora Canidae Canis EUKARYAL Canis lupus Gray wolf Canis lupus Gi01124 Genome incomplete Public Broad Institute NIH-NHGRI 9612 12895 002446_GCAT 0 0 0 0 Sanger USA Eukaryota Chordata Mammalia Carnivora Canidae Canis Canis lupus EUKARYAL Canis lupus familiaris poodle poodle dog Canis lupus familiaris Gi00131 Genome incomplete Public Vanderbilt Univ, J. Craig Venter Institute TIGR tgi@tigr.org 9615 10628 002447_GCAT 0 AACN010000000 Draft 1.5x 0 0 39 0 0 Sanger USA Eukaryota Chordata Mammalia Primates Cebidae Callithrix EUKARYAL Callithrix jacchus Marmoset Callithrix jacchus Gi00992 Genome incomplete Public BCM-HGSC, Washington Univ NIH-NHGRI Highlander, SK sarahh@bcm.tmc.edu http://genome.wustl.edu/Bio/email_data.cgi?staff=Wes%20Warren 9483 13630 002448_GCAT 0 0 0 0 USA Eukaryota Dictyosteliida Dictyostelium Dictyostelium citrinum EUKARYAL Dictyostelium citrinum OH494 OH494 Gi01817 Genome incomplete Public BCM-HGSC NSF Highlander, SK sarahh@bcm.tmc.edu 361072 002449_GCAT 0 34000 0 0 USA Eukaryota Dictyosteliida Polysphondylium Polysphondylium violaceum EUKARYAL Polysphondylium violaceum P6 P6 Gi01818 Genome incomplete Public BCM-HGSC NSF Highlander, SK sarahh@bcm.tmc.edu 133409 002450_GCAT 0 34000 0 0 USA Eukaryota Chordata Mammalia Primates Cebidae Callithrix EUKARYAL Callithrix jacchus Marmoset Callithrix jacchus Gi01819 Genome incomplete Public RIKEN 9483 13629 002451_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Rodentia Caviidae Cavia EUKARYAL Cavia porcellus inbred line 2N inbred line 2N Guinea pig Cavia porcellus 2N Gi00744 Genome incomplete Public Broad Institute NIH-NHGRI 10141 12583 002452_GCAT 0 AAKN00000000 Draft 2x 0 0 31 0 0 Sanger USA Eukaryota Chordata Mammalia Xenarthra Dasypodidae Dasypus EUKARYAL Dasypus novemcinctus 3-136 3-136 Armadillo Dasypus novemcinctus Gi00746 Genome incomplete Public Broad Institute, NISC-NIH NIH-NHGRI 9361 12594 002453_GCAT 0 AAGV09000000 Draft 6-7x 0 0 32 0 0 Sanger USA Eukaryota Chordata Mammalia Dasyuromorphia Dasyuridae Sminthopsis EUKARYAL Sminthopsis macroura Dunnart Gi01908 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 9302 002541_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Dasyuromorphia Dasyuridae Sminthopsis EUKARYAL Sminthopsis crassicaudata fat-tailed dunnart Gi01613 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 9301 002454_GCAT 0 0 0 0 USA Eukaryota Chordata Squamata Iguanidae Anolis EUKARYAL Anolis carolinensis JBL SC #1 JBL SC #1 green anole Anolis carolinensis JBL SC #1 Gi01614 Genome incomplete Public Broad Institute NIH-NHGRI 28377 18787 002455_GCAT 0 AAWZ00000000 Draft 6.85x 2200000 0 0 Sanger USA Eukaryota Chordata Crocodylidae Alligator EUKARYAL Alligator mississippiensis American alligator Gi01820 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 8496 002456_GCAT 0 0 0 0 USA Eukaryota Chordata Sphenodontia Sphenodontidae Sphenodon EUKARYAL Sphenodon punctatus Tuatara Gi01821 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 8508 002457_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Chiroptera Vespertilionidae Myotis EUKARYAL Myotis lucifugus little brown bat Myotis lucifugus Gi01615 Genome-Regions incomplete Public Broad Institute NIH-NHGRI 59463 16951 002458_GCAT 0 AAPE01000000 Draft 6-7x 0 0 0 Sanger USA Eukaryota Chordata Mammalia Chiroptera Phyllostomidae Artibeus EUKARYAL Artibeus jamaicensis Jamaican fruit-eating bat Gi01616 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 9417 002459_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Chiroptera Phyllostomidae Carollia EUKARYAL Carollia perspicillata Seba's short-tailed bat Gi01617 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 40233 002460_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Tenrecidae Echinops EUKARYAL Echinops telfairi 266 266 Hedgehog Echinops telfairi Gi00745 Genome incomplete Public Broad Institute NIH-NHGRI 9371 12590 002461_GCAT 0 AAIY00000000 Draft 2x 0 0 0 Sanger USA Eukaryota Chordata Mammalia Proboscidea Elephantidae Elephas EUKARYAL Elephas maximus Elephant Gi01226 Genome incomplete Public Broad Institute NIH-NHGRI 9783 002462_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Perissodactyla Equidae Equus EUKARYAL Equus caballus thoroughbred thoroughbred Horse Equus caballus Gi00232 Genome incomplete Public Univ of Kentucky, Broad Institute USDA Frahm RR rfrahm@reeusda.gov 9796 18661 002463_GCAT 0 AAWR00000000 Draft 6.8x 0 0 0 Sanger USA Eukaryota Chordata Mammalia Perissodactyla Equidae Equus EUKARYAL Equus caballus Horse Equus caballus Gi02454 EST incomplete Public Univ of Georgia 9796 11762 002844_GCAT 0 80000 0 0 USA Eukaryota Chordata Mammalia Insectivora Erinaceidae Erinaceus EUKARYAL Erinaceus europaeus Hedgehog Erinaceus europaeus Gi00743 Genome incomplete Public Broad Institute NIH-NHGRI 9365 12576 002464_GCAT 0 AANN00000000 Draft 2x 0 0 0 Sanger USA Eukaryota Chordata Mammalia Carnivora Felidae Felis EUKARYAL Felis catus Cat Gi00248 Genome incomplete Public National Cancer Institute Pontius JU Pontiusj@ncifcrf.gov 9685 002465_GCAT 0 Draft 1.9x 0 20285 0 USA inbred Abyssinian domestic cat inbred Abyssinian domestic cat Eukaryota Chordata Mammalia Carnivora Felidae Felis EUKARYAL Felis catus Abyssinian Abyssinian cat Felis catus Gi00748 Genome incomplete Public Broad Institute, Agencourt Bioscience NIH-NHGRI 9685 16726 002466_GCAT 0 AANG00000000 Draft 2x 0 0 0 Sanger USA Eukaryota Chordata Mammalia Proboscidea Elephantidae Loxodonta EUKARYAL Loxodonta africana ISIS603380 ISIS603380 African elephant Loxodonta africana Gi02449 Genome incomplete Public Broad Institute NIH-NHGRI 9785 12569 002467_GCAT 0 AAGU01000000 6-7x 3000000 0 28 0 0 Sanger USA San Diego Zoo, CA USA San Diego Zoo, CA 32.736195 -117.14972 Eukaryota Nucleariidae Nuclearia Nuclearia simplex EUKARYAL Nuclearia simplex Nuclearia simplex Gi02476 Genome incomplete Public Broad Institute NIH-NHGRI Origins of Multicellularity Project (OMP) 154970 20493 003201_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Diprotodontia Macropodidae Macropus EUKARYAL Macropus eugenii Kangaroo Macropus eugenii Gi00341 Genome incomplete Public AGRF, Australian National Univ, Macquarie Univ, BCM-HGSC, Univ of Melbourne NIH-NHGRI Highlander, SK sarahh@bcm.tmc.edu 9315 12587 002468_GCAT 0 ABQO000000000 Draft Meug_1.0 2x 0 0 0 Sanger Australia Lung from a female Eukaryota Chordata Mammalia Monotremata Ornithorhynchidae Ornithorhynchus EUKARYAL Ornithorhynchus anatinus Platypus Ornithorhynchus anatinus Gc00781 Gi00420 Genome Complete and Published Public Washington Univ NIH-NHGRI Warren W http://genome.wustl.edu/Bio/email_data.cgi?staff=Wes%20Warren 2008-05-08 Nature 453, 175-183 Model organism 9258 12885 002471_GCAT 0 AAPN01000000 Complete Level 2: High-Quality Draft 6x 1840000 0 52 0 0 Sanger USA Eukaryota Chordata Mammalia Primates Hylobatidae Nomascus Nomascus leucogenys EUKARYAL Nomascus leucogenys leucogenys Northern white-cheeked gibbon Nomascus leucogenys Gi01486 Genome incomplete Public Washington Univ NIH-NHGRI Warren W http://genome.wustl.edu/Bio/email_data.cgi?staff=Wes%20Warren 164929 13975 002472_GCAT 0 0 0 0 USA Eukaryota Nematoda Chromadorea Rhabditida Chabertiidae Oesophagostomum Oesophagostomum dentatum EUKARYAL Oesophagostomum dentatum Oesophagostomum dentatum Gi02477 Genome incomplete Public Washington Univ Biotechnological 61180 20459 003202_GCAT 0 0 0 0 USA Eukaryota Nematoda Chromadorea Rhabditida Haemonchidae Ostertagia Ostertagia ostertagi EUKARYAL Ostertagia ostertagi Ostertagia ostertagi Gi02478 Genome incomplete Public Washington Univ 6317 20473 003203_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Lagomorpha Leporidae Oryctolagus EUKARYAL Oryctolagus cuniculus Thorbecke inbred Thorbecke inbred Rabbit Oryctolagus cuniculus Gi00747 Genome incomplete Public Broad Institute NIH-NHGRI 9986 12819 002473_GCAT 0 AAGW00000000 Draft 6-7x 3500000 0 21 0 0 Sanger USA Eukaryota Chordata Mammalia Bovidae Ovis EUKARYAL Ovis aries Sheep Ge00197 EST incomplete Public 9940 002474_GCAT 0 186678 0 0 USA Eukaryota Chordata Mammalia Insectivora Soricidae Sorex EUKARYAL Sorex araneus GB8-d GB8-d Common shrew Sorex araneus Gi02450 Genome incomplete Public Broad Institute NIH-NHGRI 42254 13689 002475_GCAT 0 AALT00000000 Draft 2x 3000000 0 0 Sanger USA Piel Island UK Piel Island UK Insectivore Eukaryota Chordata Mammalia Rodentia Sciuridae Spermophilus EUKARYAL Spermophilus tridecemlineatus squirrel Spermophilus tridecemlineatus Gi01145 Genome incomplete Public Broad Institute NIH-NHGRI 43179 13937 002476_GCAT 0 AAQQ01000000 Draft 2x 0 0 0 Sanger USA Eukaryota Chordata Mammalia Suidae Sus EUKARYAL Sus scrofa Pig Sus scrofa Ge00198 EST incomplete Public Roslin Institute 9823 12452 002477_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Suidae Sus EUKARYAL Sus scrofa Pig Sus scrofa Ge00235 EST complete Public STAFF-Institute, NIAS 9823 16191 002834_GCAT 0 13000 0 0 USA Eukaryota Bacillariophyta Coscinodiscophyceae Thalassiosiraceae Thalassiosira Thalassiosira pseudonana EUKARYAL Thalassiosira pseudonana Thalassiosira pseudonana Ge00236 EST incomplete Public Stazione Zoologica Anton Dohrn Carbon cycle, Environmental 35128 13883 002836_GCAT 0 30000 0 0 Italy None Fresh water Carbon sequestration Photosynthetic Eukaryota Chordata Mammalia Suidae Sus EUKARYAL Sus scrofa Sus scrofa Gi00635 Genome incomplete Public Sanger Institute, International Partnership, Beijing Genomics Institute Amersham Pharmacia 9823 13421 002478_GCAT 0 6x 2800000 0 0 Sanger China Eukaryota Chordata Mammalia Rodentia Muridae Mus EUKARYAL Mus musculus 129X1/SvJ; 129S1/SvImJ; DBA/2J; A/J Mus musculus 129X1/SvJ; 129S1/SvImJ; DBA/2J; A/J Gi02163 Genome incomplete Public Celera Genomics 10090 11785 002820_GCAT 0 AAHY00000000 Draft 0 0 0 Sanger USA Eukaryota Chordata Mammalia Rodentia Muridae Mus EUKARYAL Mus musculus Mus musculus Ge00231 EST incomplete Public RIKEN Model organism 10090 12246 002821_GCAT 0 60000 0 0 Japan None Eukaryota Chordata Mammalia Rodentia Muridae Rattus EUKARYAL Rattus norvegicus GK/Ox GK/Ox Norway rat Rattus norvegicus GK/Ox Gi02167 Genome incomplete Public European STAR Consortium Model organism 10116 18693 002828_GCAT 639431600 AAXP00000000 Draft 0.01x 0 0 0 Sanger European Consortium None Eukaryota Chordata Mammalia Rodentia Muridae Rattus EUKARYAL Rattus norvegicus SHRSP/Bbb SHRSP/Bbb Norway rat Rattus norvegicus SHRSP/Bbb Gi02171 Genome incomplete Public European STAR Consortium Model organism 10116 18689 002832_GCAT 0 AAXM00000000 Draft 0.01x 0 0 0 Sanger European Consortium None Eukaryota Chordata Mammalia Rodentia Muridae Rattus EUKARYAL Rattus norvegicus SS/JrNhsd SS/JrNhsd Norway rat Rattus norvegicus SS/JrNhsd Gi02170 Genome incomplete Public European STAR Consortium Model organism 10116 18691 002831_GCAT 0 AAXN00000000 Draft 0.01x 0 0 0 Sanger European Consortium None Eukaryota Chordata Mammalia Rodentia Muridae Rattus EUKARYAL Rattus norvegicus WKY/Bbb WKY/Bbb Norway rat Rattus norvegicus WKY/Bbb Gi02169 Genome incomplete Public European STAR Consortium Model organism 10116 18687 002830_GCAT 0 AAXL00000000 Draft 0.01x 0 0 0 Sanger European Consortium None Eukaryota Chordata Mammalia Rodentia Muridae Rattus EUKARYAL Rattus norvegicus wild rat 1 wild rat 1 Norway rat Rattus norvegicus wild rat 1 Gi02168 Genome incomplete Public European STAR Consortium Model organism 10116 18695 002829_GCAT 0 AAXO00000000 Draft 0.01x 0 0 0 Sanger European Consortium Netherlands: canals of Utrecht Netherlands Netherlands: canals of Utrecht 52.091262 5.122748 None Eukaryota Chordata Mammalia Rodentia Muridae Rattus EUKARYAL Rattus norvegicus Norway rat Rattus norvegicus Ge00263 EST incomplete Public University of Iowa Model organism 10116 12285 002864_GCAT 0 0 0 0 USA None Eukaryota Chordata Mammalia Suidae Sus EUKARYAL Sus scrofa Pig Ge00199 EST incomplete Public Univ of Illinois at Urbana-Champaign Beever JE http://www.ansci.uiuc.edu/faculty/MeetOurFaculty/faculty_pages/index.cfm?ID=1158 9823 002479_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Suidae Sus EUKARYAL Sus scrofa Sus scrofa Ge00200 EST complete Public Univ of Missouri Monsanto Prather RS http://www.asrc.agri.missouri.edu/faculty/Prather.html 9823 12451 002480_GCAT 0 2489 0 0 USA Eukaryota Chordata Mammalia Tenrecidae Tenrec EUKARYAL Tenrec ecaudatus tail-less tenrec tail-less tenrec Gi01176 Genome incomplete Public Broad Institute NIH-NHGRI 94439 002481_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Scandentia Tupaiidae Tupaia EUKARYAL Tupaia belangeri Northern tree shrew Tupaia belangeri Ge00201 EST incomplete Public IIB-UNSAM Sanchez DO dsanchez@iib.unsam.edu.ar 37347 13938 002482_GCAT 0 0 0 0 Argentina unclassified unclassified unclassified unclassified unclassified unclassified unclassified EUKARYAL Ape Gi00030 Genome incomplete Public National Institute of Genetics, Japan Saitou N http://sayer.lab.nig.ac.jp/~saitou/index.html 002483_GCAT 0 0 0 0 Japan Eukaryota Chordata Mammalia Primates Lemuridae Lemur EUKARYAL Lemur catta Lemur catta Gi01146 Genome incomplete Public Broad Institute NIH-NHGRI 9447 12897 002484_GCAT 0 0 0 0 Sanger USA Eukaryota Chordata Mammalia Primates Cercopithecidae Macaca EUKARYAL Macaca mulatta Rhesus monkey Macaca mulatta Gi02162 Genome incomplete Public IMB, Jena 9544 18243 002818_GCAT 0 AAGN01000000 Draft 0.08x 0 0 40.7 Sanger Germany Eukaryota Chordata Mammalia Primates Cercopithecidae Macaca Macaca fuscata EUKARYAL Macaca fuscata Japanese macaque Gi01822 Genome incomplete Public RIKEN MEXT 9543 002486_GCAT 0 0 0 0 Japan Eukaryota Chordata Mammalia Primates Galagidae Otolemur EUKARYAL Otolemur garnettii Otolemur garnettii Gi01147 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 30611 13679 002487_GCAT 0 0 0 0 Sanger USA Eukaryota Chordata Mammalia Didelphimorphia Didelphidae Didelphis EUKARYAL Didelphis virginiana Gi01823 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 9267 002488_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Bovidae Ovis EUKARYAL Ovis aries Sheep Gi01824 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 9940 002489_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Primates Hominidae Pongo Pongo pygmaeus EUKARYAL Pongo pygmaeus pygmaeus Bornean orangutan Gi01825 Genome-Regions incomplete Public Broad Institute, NISC-NIH NIH-NHGRI 9602 002490_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Primates Hominidae Pongo Pongo pygmaeus EUKARYAL Pongo pygmaeus pygmaeus Orangutan Gi02166 Genome-Regions incomplete Public BCM-HGSC NIH-NHGRI Highlander, SK sarahh@bcm.tmc.edu 9602 12833 002827_GCAT 0 4x 0 0 0 Sanger USA Eukaryota Chordata Mammalia Primates Hominidae Pongo EUKARYAL Pongo pygmaeus pygmaeus Orangutan Pongo abelii Gi02332 Genome incomplete Public IMB, Jena 9600 18245 003054_GCAT 0 AAGM01000000 Draft 0.08x 0 0 0 Sanger Germany Eukaryota Ascomycota Dothideomycetes Pleosporales Pleosporaceae Pyrenophora Pyrenophora tritici-repentis EUKARYAL Pyrenophora tritici-repentis Pt-1C-BFP Pt-1C-BFP Pyrenophora tritici-repentis Gi02333 Genome incomplete Public Broad Institute Plant Pathogen, Agricultural, Fungal Genome Initiative (FGI) 426418 18823 003055_GCAT 0 AAXI00000000 Draft 37800 0 0 Sanger USA Tan spot Pathogen Eukaryota Chordata Mammalia Primates Cebidae Saimiri Saimiri boliviensis EUKARYAL Saimiri boliviensis boliviensis Bolivian squirrel monkey Gi01826 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 39432 002491_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Primates Galagidae Otolemur EUKARYAL Otolemur garnettii Otolemur garnettii Gi01827 Genome incomplete Public Broad Institute NIH-NHGRI 30611 16955 002492_GCAT 0 AAQR01000000 Draft 0 0 0 Sanger USA Eukaryota Chordata Mammalia Primates Hominidae Gorilla EUKARYAL Gorilla gorilla gorilla gorilla Gi01828 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 9593 002493_GCAT 0 0 0 0 Sanger USA Eukaryota Chordata Mammalia Primates Hominidae Homo EUKARYAL Homo sapiens JD Watson JD Watson Homo sapiens Gc00892 Gi02338 Genome Complete and Published Public BCM-HGSC, 454 Life Sciences Gibbs R ragibbs@bcm.tmc.edu 2008-04-21 Nature 452, 872-6 Medical 9606 28335 003060_GCAT 0 ABKV00000000 Complete 0 0 0 454 USA Aerobe Mesophile 36 Male, Caucasian Eukaryota Basidiomycota Agaricomycetes Agaricales Tricholomataceae Lentinula EUKARYAL Lentinula edodes L-54 L-54 shiitake mushroom Lentinula edodes L-54 Gi02161 Genome incomplete Public Chinese Univ of Hong Kong Biofuels, Bioenergy, Biotechnological 5353 17581 002815_GCAT 0 33000 0 8 0 0 Sanger China None Lignin degrader, Cellulose degrader Eukaryota Chordata Mammalia Primates Hominidae Homo EUKARYAL Home sapiens Homo sapiens Ge00227 EST incomplete Public German Consortium 9606 10874 002814_GCAT 0 0 0 0 Germany Eukaryota Chordata Mammalia Primates Hominidae Homo EUKARYAL Home sapiens Homo sapiens Ge00226 EST incomplete Public Kazusa DNA Research Institute 9606 10875 002813_GCAT 0 0 0 0 Japan Eukaryota Chordata Mammalia Primates Hominidae Gorilla EUKARYAL Gorilla gorilla gorilla gorilla Gorilla gorilla Gi02158 Genome incomplete Public IMB, Jena 9593 18247 002810_GCAT 0 AAGL00000000 Draft 0 0 0 Sanger Germany Eukaryota Chordata Testudines Testudinidae Gopherus EUKARYAL Gopherus agassizii Desert tortoise Gi01829 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 38772 002494_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Primates Lemuridae Eulemur Eulemur macaco EUKARYAL Eulemur macaco macaco Lemur Gi01830 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 30603 002495_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Primates Cheirogaleidae Microcebus EUKARYAL Microcebus murinus Gray mouse lemur Gi01831 Genome incomplete Public Broad Institute, NISC-NIH NIH-NHGRI 30608 002496_GCAT 0 ABDC00000000 Draft 2x 0 0 0 Sanger USA Eukaryota Chordata Mammalia Primates Pitheciidae Callicebus EUKARYAL Callicebus moloch Dusky titi Gi01832 Genome-Regions incomplete Public NISC-NIH, J. Craig Venter Institute NIH-NHGRI 9523 002497_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Primates Cercopithecidae Papio EUKARYAL Papio hamadryas Baboon Papio hamadryas Gi01378 Genome-Regions incomplete Public BCM-HGSC NIH-NHGRI Highlander, SK sarahh@bcm.tmc.edu 9557 20425 002498_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Chiroptera Rhinolophidae Rhinolophus EUKARYAL Rhinolophus ferrumequinum horseshoe bat Rhinolophus ferrumequinum Gi01618 Genome-Regions incomplete Public NISC-NIH NIH-NHGRI 59479 13678 002499_GCAT 0 0 0 29 0 0 USA Eukaryota Chordata Mammalia Primates Cercopithecidae Papio EUKARYAL Papio anubis Olive baboon Papio anubis Gi00429 Genome incomplete Public Univ of Oklahoma Roe B broe@ou.edu 9555 12966 002500_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Primates Hominidae Pan EUKARYAL Pan troglodytes Chimpanzee Pan troglodytes Gi00425 Genome-Regions incomplete Public Celera Genomics 9598 13698 002501_GCAT 0 0 0 0 USA Eukaryota Chordata Mammalia Primates Hominidae Pongo EUKARYAL Pongo pygmaeus abelii ISIS 71 ISIS 71 Sumatran orangutan Gi00749 Genome incomplete Public BCM-HGSC, Washington Univ NIH-NHGRI Highlander, SK sarahh@bcm.tmc.edu http://genome.wustl.edu/Bio/email_data.cgi?staff=Wes%20Warren 9601 002503_GCAT 0 ABGA00000000 Draft 3x 0 0 0 Sanger USA Blood of Female from Gladys Porter Zoo, Brownsville, TX USA Blood of Female from Gladys Porter Zoo, Brownsville, TX 25.913323 -97.495017 Eukaryota Chordata Mammalia Scandentia Tupaiidae Tupaia EUKARYAL Tupaia belangeri Northern tree shrew Tupaia belangeri Gi01833 Genome incomplete Public Broad Institute NIH-NHGRI 37347 13971 002504_GCAT 0 AAPY01000000 Draft 2x 0 0 0 Sanger USA Eukaryota Platyhelminthes Cestoda Cyclophyllidea Taeniidae Echinococcus EUKARYAL Echinococcus granulosus Echinococcus granulosus Ge00202 EST incomplete Public Sanger Institute Wellcome Trust Johnston D daj@nhm.ac.uk 6210 12619 002505_GCAT 0 60000 0 0 United Kingdom Eukaryota Platyhelminthes Cestoda Cyclophyllidea Taeniidae Echinococcus Echinococcus multilocularis EUKARYAL Echinococcus multilocularis Ge00269 EST incomplete Public Sanger Institute Wellcome Trust Berriman M mb4@sanger.ac.uk 6211 002871_GCAT 0 60000 0 0 United Kingdom Eukaryota Platyhelminthes Trematoda Echinostomida Fasciolidae Fasciola EUKARYAL Fasciola hepatica Liver fluke Fasciola hepatica Ge00203 EST incomplete Public Sanger Institute Johnston D daj@nhm.ac.uk Human Pathogen, Medical 6192 12611 002506_GCAT 0 15000 0 0 United Kingdom Fascioliasis Host Parasite Eukaryota Platyhelminthes Cestoda Cyclophyllidea Taeniidae Taenia EUKARYAL Taenia solium pig tapeworm Taenia solium Gi01945 Genome incomplete Public Univ Nacional Autonoma de Mexico Human Pathogen, Animal Pathogen, Medical, Swine Pathogen 6204 16816 002569_GCAT 0 10x 260000 0 0 Sanger, Clone-based Mexico Cysticercosis Host Pathogen Eukaryota Platyhelminthes Cestoda Cyclophyllidea Taeniidae Taenia EUKARYAL Taenia solium pig tapeworm Ge00265 EST incomplete Public Univ Nacional Autonoma de Mexico Laclettea, JP laclette@biomedicas.unam.mx Animal Pathogen, Human Pathogen, Medical, Swine Pathogen 6204 002866_GCAT 0 0 0 0 Mexico Cysticercosis Host Pathogen Eukaryota Kinetoplastida Trypanosomatidae Trypanosoma Trypanosoma cruzi EUKARYAL Trypanosoma cruzi Ge00266 EST incomplete Public Uppsala Univ Human Pathogen, Medical 5693 002867_GCAT 0 5000 0 0 Sweden Chagas disease, American Trypanosomiasis Pathogen, Parasite Eukaryota Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma EUKARYAL Schistosoma Gi00546 Genome incomplete Public World Bank Schistosoma Genome Network, UNDP, WHO Johnston D daj@nhm.ac.uk 6181 002507_GCAT 0 0 0 0 International Eukaryota Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma haematobium EUKARYAL Schistosoma haematobium Schistosoma haematobium Ge00204 EST incomplete Public Sanger Institute Johnston D daj@nhm.ac.uk 6185 12616 002508_GCAT 0 15000 0 0 United Kingdom Eukaryota Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum EUKARYAL Schistosoma japonicum Schistosoma japonicum Ge00205 EST incomplete Public Chinese National Human Genome Center at Shanghai, Institute of Parasitic Diseases 6182 12600 002509_GCAT 0 0 0 0 China Eukaryota Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni EUKARYAL Schistosoma mansoni Schistosoma mansoni Ge00193 EST complete Public ONSA FAPESP Verjovski-Almeida S verjo@iq.usp.br 6183 12602 002510_GCAT 0 Complete 163000 0 0 Brazil Eukaryota Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni EUKARYAL Schistosoma mansoni Puerto Rican Puerto Rican Schistosoma mansoni Gi00547 Genome incomplete Public Sanger Institute, J. Craig Venter Institute NIH-NIAID TIGR smansoni@tigr.org 6183 12598 002511_GCAT 0 8x 270000 0 8 0 0 Sanger International Eukaryota Platyhelminthes Turbellaria Tricladida Dugesiidae Schmidtea EUKARYAL Schmidtea mediterranea hermaphroditic hermaphroditic Ge00208 EST incomplete Public Univ of Utah Newmark P http://www.life.uiuc.edu/newmark/ 79327 002512_GCAT 0 27000 0 0 USA Eukaryota Platyhelminthes Turbellaria Tricladida Dugesiidae Schmidtea EUKARYAL Schmidtea mediterranea asexual asexual Ge00133 EST incomplete Public Univ of Utah, Washington Univ Sanchez Alvarado A http://www.neuroscience.med.utah.edu/Faculty/Sanchez.html 79327 002513_GCAT 0 0 0 0 USA Eukaryota Platyhelminthes Turbellaria Tricladida Dugesiidae Schmidtea Schmidtea mediterranea EUKARYAL Schmidtea mediterranea S2F2 S2F2 Planarian Schmidtea mediterranea S2F2 Gi00994 Genome incomplete Public Washington Univ NIH-NHGRI Clifton S http://genome.wustl.edu/Bio/email_data.cgi?staff=Sandra%20Clifton Model organism 412041 12585 002514_GCAT 0 NZ_AAWT00000000 Draft 11.6x 865587 0 4 0 USA None Eukaryota Hemichordata Enteropneusta Harrimaniidae Saccoglossus EUKARYAL Saccoglossus kowalevskii Acorn worm Saccoglossus kowalevskii Gi00995 Genome incomplete Public BCM-HGSC NIH-NHGRI Highlander, SK sarahh@bcm.tmc.edu 10224 12887 002515_GCAT 0 6x 0 0 0 Sanger USA Eukaryota Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp. NC64A EUKARYAL Chlorella sp. NC64A NC64A Chlorella sp. NC64A ATCC 50258 Gi01362 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 310507 18711 002516_GCAT 0 40000 0 0 Sanger USA None Eukaryota Streptophyta Brassicales Caricaceae Carica EUKARYAL Carica papaya SunUp SunUp Papaya Carica papaya SunUp Gi01929 Genome incomplete Public Papaya Genome Consortium ASGPB http://cgpbr.hawaii.edu/contact/ 3649 20267 002553_GCAT 0 3x 372000 0 9 0 0 USA None Eukaryota Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella EUKARYAL Chlorella vulgaris C-169 C-169 Coccomyxa sp. C-169 Gi01363 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 3077 32657 32657 002517_GCAT 0 40000 0 0 Sanger USA None Eukaryota Streptophyta Charophyceae Charales Characeae Chara Chara vulgaris EUKARYAL Chara vulgaris Stoneworts Chara vulgaris Gi01930 Genome incomplete Public Genome Sciences Centre, Univ Laval 55564 12181 002554_GCAT 0 0 0 0 Canada None Eukaryota Dictyosteliida Dictyostelium Dictyostelium purpureum EUKARYAL Dictyostelium purpureum QXDP1 QXDP1 Gi01364 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 5786 002518_GCAT 0 34000 0 0 USA None Eukaryota Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina EUKARYAL Dunaliella salina UTEX, CCAP 19/18 UTEX, CCAP 19/18 Dunaliella salina CCAP 19/18 Gi01365 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 3046 32771 32771 002519_GCAT 0 130000 0 0 USA None Eukaryota Bacillariophyta Bacillariophyceae Bacillariaceae Pseudo-nitzschia EUKARYAL Pseudo-nitzschia multiseries CLN-47 CLN-47 Gi01366 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 37319 002520_GCAT 0 25000 0 0 USA None Eukaryota Basidiomycota Agaricomycetes Agaricales Schizophyllaceae Schizophyllum Schizophyllum commune EUKARYAL Schizophyllum commune H4-8 H4-8 Schizophyllum commune H4-8 Gi01367 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Human Pathogen, Medical 5334 32757 32757 002521_GCAT 0 38000 0 0 USA Sporulating Human mycosis Pathogen Eukaryota Basidiomycota Malasseziales Malassezia Malassezia globosa EUKARYAL Malassezia globosa CBS 7966 CBS 7966 Malassezia globosa CBS 7966 Gc00704 Gi01941 Genome Complete and Published Public Procter & Gamble Dawson TL dawson.tl@pg.com 2007-11-26 PNAS 104, 18730-5 Human Pathogen, Medical 425265 18719 002565_GCAT 0 AAYY00000000 Complete 7x 9000 4285 52 Sanger USA Dandruff, Dermatitis, Opportunistic infection, Psoriasis, Skin disorders, Systemic infection Host, Cutaneous microflora Lipophilic, Opportunistic Pathogen Eukaryota Basidiomycota Malasseziales Malassezia Malassezia restricta EUKARYAL Malassezia restricta CBS 7877 CBS 7877 Malassezia restricta CBS 7877 Gi01942 Genome complete Public Procter & Gamble Dawson TL dawson.tl@pg.com Medical, Human Pathogen 425264 18721 002566_GCAT 0 AAXK01000000 Draft 1x 0 0 0 Sanger USA Dandruff, Dermatitis, Psoriasis, Skin disorders, Systemic infection Cutaneous microflora, Host Opportunistic Pathogen, Lipophilic Eukaryota Ascomycota Sordariomycetes Hypocreales Hypocreaceae Trichoderma Trichoderma atroviride EUKARYAL Trichoderma atroviride IMI 206040 IMI 206040 Trichoderma atroviride IMI 206040 Gi01368 Genome Permanent Draft Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Medical, Biocontrol 452589 19867 002522_GCAT 0 ABDG00000000 Complete Level 2: High-Quality Draft 8.3x 36000 0 11000 0 Sanger USA Alaska Alaska Psychrotolerant None Fungicide Eukaryota Ascomycota Dothideomycetes Pleosporales Pleosporaceae Cochliobolus EUKARYAL Cochliobolus heterostrophus C5 C5 Gi01754 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 5016 002523_GCAT 0 Draft 9.95x 34900 0 9633 0 USA None Eukaryota Neocallimastigomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Orpinomyces EUKARYAL Orpinomyces sp PC-2 PC-2 Gi01756 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 50059 002524_GCAT 0 20000 0 0 USA Eukaryota Basidiomycota Sporidiobolales Rhodosporidium Rhodosporidium babjevae EUKARYAL Rhodosporidium babjevae WP1 WP1 Rhodosporidium babjevae WP1 Gi01757 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 86837 32711 32711 002525_GCAT 0 20000 0 2 0 USA Eukaryota Basidiomycota Agaricomycetes Corticiales Corticiaceae Phanerochaete Phanerochaete carnosa EUKARYAL Phanerochaete carnosa HHB-10118-sp HHB-10118-sp Gi01758 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 231932 002526_GCAT 0 35000 0 0 USA Eukaryota Mucorales Mucoraceae Mucor Mucor circinelloides EUKARYAL Mucor circinelloides CBS277.49 (-) CBS277.49 (-) Gi01759 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 70416 002527_GCAT 0 36000 0 0 USA Eukaryota Ascomycota Sordariomycetes Hypocreales Acremonium Acremonium alcalophilum EUKARYAL Acremonium alcalophilum ATCC 90507 ATCC 90507 IMI 351927, CBS 114.92, PA-2M, JCM 7366, ATCC 90507 Gi01760 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 591952 33785 002528_GCAT 0 In progress 40000 0 0 USA None Alkalophile, Cellulose degrader Eukaryota Ascomycota Sordariomycetes Sordariales Chaetomiaceae Corynascus EUKARYAL Corynascus (Sporotrichum) heterothallicus (thermophilum) ATCC42464 ATCC42464 ATCC 42464 Gi01755 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 78579 002529_GCAT 0 43000 0 0 USA Eukaryota Basidiomycota Agaricomycetes Boletales Serpulaceae Serpula Serpula lacrymans EUKARYAL Serpula lacrymans lacrymans S7.9 lacrymans S7.9 Serpula lacrymans var. lacrymans S7.9 Gi01745 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 341189 32885 32885 002530_GCAT 0 25000 0 0 USA Eukaryota Ascomycota Sordariomycetes Sordariales Chaetomiaceae Thielavia EUKARYAL Thielavia terrestris NRRL 8126 NRRL 8126 Thielavia terrestris NRRL 8126 Gi01746 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 35720 32847 32847 002531_GCAT 0 0 0 0 USA None Eukaryota Pogonophora Vestimentifera Riftiida Riftiidae Riftia EUKARYAL Riftia pachyptila Tube worm Ge00215 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 6426 002532_GCAT 0 0 0 0 USA Microbes Hydrothermal vent, Deep sea Symbiont Eukaryota Nematoda Chromadorea Tylenchida Heteroderidae Heterodera EUKARYAL Heterodera glycines TN20 TN20 soybean cyst nematode Gi02144 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 51029 002758_GCAT 0 In progress 0 0 0 USA None Eukaryota Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila EUKARYAL Tetrahymena thermophila SB210 (Micronucleus) SB210 (Micronucleus) Gi02108 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Protein production 312017 002759_GCAT 0 0 0 0 USA None Fresh water Eukaryota Streptophyta Marchantiopsida Marchantiales Marchantiaceae Marchantia EUKARYAL Marchantia polymorpha liverwort Gi02109 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 3197 002760_GCAT 0 0 0 0 USA None Eukaryota Basidiomycota Agaricomycetes Agaricales Agaricaceae Agaricus EUKARYAL Agaricus bisporus JB137-s8 JB137-s8 common mushroom Gi02110 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 5341 002761_GCAT 0 0 0 0 USA None Eukaryota Basidiomycota Agaricomycetes Agaricales Agaricaceae Agaricus EUKARYAL Agaricus bisporus H97 H97 common mushroom Gi02534 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 5341 003260_GCAT 0 0 0 0 USA None Eukaryota Phaeocystales Phaeocystaceae Phaeocystis Phaeocystis antarctica EUKARYAL Phaeocystis antarctica CCMP1374 CCMP1374 Gi02111 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Ecological 33657 002762_GCAT 0 0 0 0 USA None Fresh water Eukaryota Phaeocystales Phaeocystaceae Phaeocystis Phaeocystis globosa EUKARYAL Phaeocystis globosa Gi02112 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 33658 002763_GCAT 0 0 0 0 USA None Eukaryota Basidiomycota Agaricomycetes Boletales Paxillaceae Paxillus Paxillus involutus EUKARYAL Paxillus involutus ATCC 200175 ATCC 200175 Gi02113 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 71150 002764_GCAT 0 Awaiting DNA 0 0 0 USA None Eukaryota Streptophyta Liliopsida Poales Poaceae Setaria EUKARYAL Setaria italica Yugu1 Yugu1 foxtail millet Setaria italica Gi02114 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 4555 16881 002765_GCAT 0 Draft 0 0 0 USA None Eukaryota Streptophyta Myrtales Myrtaceae Eucalyptus EUKARYAL Eucalyptus Gi02115 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 3932 002766_GCAT 0 0 0 0 USA None Eukaryota Bangiophyceae Bangiales Bangiaceae Porphyra Porphyra purpurea EUKARYAL Porphyra purpurea Gi02116 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bioremediation, Biotechnological 2787 002767_GCAT 0 0 0 0 USA None Eukaryota Streptophyta Lamiales Lamiaceae EUKARYAL Leonotis nepetifolia Gi02264 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 378903 002979_GCAT 0 0 0 0 USA None Eukaryota Chordata Mammalia Rodentia Cricetidae Peromyscus Peromyscus polionotus EUKARYAL Peromyscus polionotus subgrisieus PO PO Gi02265 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 369710 002980_GCAT 0 0 0 0 USA None Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Erwinia Erwinia pyrifoliae BACTERIAL Erwinia pyrifoliae Ep1/96 Ep1/96 DSM 12163, CFBP 4172 Yes Gi02550 Genome incomplete Public Max Planck Institute Max Planck Society Kube M kube@molgen.mpg.de 634499 34779 003277_GCAT 9834 0 3700 0 52 Germany Facultative Rod-shaped Nonsporulating Mesophile gram- Free living None Motile Bacteria Firmicutes Bacilli Bacillales Alicyclobacillaceae Alicyclobacillus Alicyclobacillus acidocaldarius BACTERIAL Alicyclobacillus acidocaldarius LAA1 LAA1 Alicyclobacillus acidocaldarius LAA1 Gi02551 Genome incomplete Public DOE Joint Genome Institute DOE Mead D dmead@lucigen.com 543302 30381 003278_GCAT 249815 642979336 NZ_ACCS00000000 Draft 8.4x 2943 3029 61 Sanger USA acidic creek in Yellowston National Park USA acidic creek in Yellowston National Park 44.376262 -110.690383 Aerobe Rod-shaped Sporulating Thermophile 3.6 gram+ Free living None Hot spring 57 Acidophile Bacteria Dictyoglomi Dictyoglomia Dictyoglomales Dictyoglomaceae Dictyoglomus Dictyoglomus turgidum BACTERIAL Dictyoglomus turgidum DSM 6724 DSM 6724 Dictyoglomus turgidum DSM 6724 DSM 6724 Yes Gc00898 Gi02553 Genome Complete and Published Public DOE Joint Genome Institute DOE Mead, D dmead@lucigen.com Dtur 2008-12-12 Unpublished Bioenergy, Biotechnological 515635 29175 003280_GCAT 356172 643348543 NC_011661 Complete 6x 1855 1744 1 0 33 Sanger, 454 USA "Hot spring, Uzon volcano caldera; USSR, Kamchatka" Russia Kamchatka, USSR 54.517335 159.973068 Anaerobe Rod-shaped Thermophile gram+ Free living None Fresh water, Hot spring 75 Cellulose degrader Archaea Euryarchaeota Methanomicrobia Methanomicrobiales Methanosphaerula Methanosphaerula palustris ARCHAEAL Candidatus Methanosphaerula palustris E1-9c E1-9c Candidatus Methanosphaerula palustris E1-9c DSM 19958, ATCC BAA-1556 Yes Gc01080 Gi02554 Genome Complete and Published Public DOE Joint Genome Institute DOE Zinder S shz1@cornell..edu Mpal 2009-01-05 Unpublished Biotechnological 521011 29381 003281_GCAT 368755 643348525 NC_011832 Complete Level 6: Finished Prodigal, GenePRIMP 2922 2866 1 0 55 Sanger, 454 USA Rich minerotrophic fen in central New York State USA central New York State Anaerobe Coccus-shaped Mesophile gram- Free living None Soil 30 Motile Methanogen Bacteria Deinococcus-Thermus Deinococci Thermales Thermaceae Thermus Thermus aquaticus BACTERIAL Thermus aquaticus Y5.1MC23 Y5.1MC23 Thermus aquaticus Y51MC23 Gi02555 Genome Permanent Draft Public DOE Joint Genome Institute DOE Mead D dmead@lucigen.com TaqDRAFT Biotechnological 498848 28589 003282_GCAT 642791632 NZ_ABVK00000000 Complete Level 1: Standard Draft 2340 2570 68 Sanger, 454 USA Obligate aerobe Rod-shaped Nonsporulating Thermophile 7.5 - 7.8 Yellow gram- Free living Filaments None Fresh water, Hot spring 70 Nonmotile Chemosynthetic Bacteria Firmicutes Clostridia Thermoanaerobacterales Thermoanaerobacterales Family III. Incertae Sedis Thermoanaerobacterium Thermoanaerobacterium thermosaccharolyticum BACTERIAL Thermoanaerobacterium thermosaccharolyticum DSM 571 DSM 571 Thermoanaerobacterium thermosaccharolyticum DSM 571 ATCC 7956, NCIB 9385, DSM 571, NCA 3814 Yes Gi02556 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 580327 33165 003283_GCAT 266941 0 NZ_ACVG00000000 Draft 109 2706 2825 46 Sanger, 454 USA Obligate anaerobe Rod-shaped Sporulating Thermophile gram+ Free living Pairs, Singles None 55-60 Motile Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Xanthobacteraceae Starkeya Starkeya novella BACTERIAL Starkeya novella DSM 506 DSM 506 CCM 1077, IFO 12443, ATCC 8093, NBRC 12443, NCIB 9113, DSM 506 Yes Gi02557 Genome incomplete Public DOE Bruce D microbes@cuba.jgi-psf.org Carbon cycle, Environmental 639283 37659 003284_GCAT 4661 0 DNA Received 21x 5000 0 0 Sanger, 454 USA Soil Mesophile gram- Free living None Soil 26 - 30 Carbon dioxide fixation Heterotroph, Chemolithotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium kroppenstedtii BACTERIAL Corynebacterium kroppenstedtii DSM 44385 DSM 44385 CCUG 35717, DSM 44385 Yes Gc00770 Gi02558 Genome Complete and Published Public IGS, Bielefeld Univ Bielefeld Univ Tauch, A Andreas.Tauch@genetik.uni-bielefeld.de http://www.cebitec.uni-bielefeld.de/~tauch ckrop 2009-05-19 J Biotechnology 136, 22-30 645127 38011 003285_GCAT 105080 643692019 NC_012704 Complete Level 6: Finished 2446 2083 1 0 57.5 Germany Human sputum of a 82-year-old woman with pulmonary disease Human sputum of a 82-year-old woman with pulmonary disease Homo sapiens Female 82 years old Patient with pulmonary disease Airways Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host 37 Nonmotile Lacks Mycolic acids, Catalase positive Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus thermophilus ATCC BAA-491 ATCC BAA-491 ATCC BAA-491 Gi00621 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Food industry, Biotechnological 1308 001570_GCAT 281285 0 0 0 0 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains None Nonmotile Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus solfataricus ARCHAEAL Sulfolobus solfataricus 98/2 98/2 Sulfolobus solfataricus 98/2 Gi02560 Genome incomplete Public DOE Joint Genome Institute DOE Brune A microbes@cuba.jgi-psf.org Biotechnological 555311 30989 003287_GCAT 0 NZ_ACQS00000000 Draft 2630 3061 35 USA Obligate aerobe Coccus-shaped Nonsporulating Hyperthermophile 2.0 - 4.5 0.8 - 2.0 um gram- Free living Singles None Fresh water 85 Motile Acidophile Lithotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XVII. Incertae Sedis BACTERIAL Thermaerobacter sp. Y412MC57 Y412MC57 Gi02561 Genome incomplete Public DOE Joint Genome Institute DOE Mead, D dmead@lucigen.com 73918 003288_GCAT 0 3000 0 70 Sanger USA Aerobe Rod-shaped Nonsporulating Thermophile gram+ Free living Marine Nonmotile Heterotroph Bacteria Firmicutes Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter BACTERIAL Thermoanaerobacter ethanolicus X514 X514 Thermoanaerobacter sp. X514 ATCC BAA-938 Yes Gc00717 Gi02562 Genome Complete and Published Public DOE Joint Genome Institute DOE Fields M matthew.fields@erc.montana.edu Teth514 2008-02-05 Unpublished Biotechnological 399726 16394 003289_GCAT 169356 641522656 NC_010320 Complete 11x 2457 2529 1 0 34 454, Sanger USA "Anaerobic enrichment culture from a deep subsurface sample (2000 m below the surface) taken from a core hole at the Piceance Basin, Colorado, USA" December, 2001 USA Piceance Basin, Colorado, USA 39.348317 -107.859192 2000 meter Anaerobe Rod-shaped Sporulating Thermophile gram+ Free living None Deep subsurface, Fresh water 60 Motile Bacteria Firmicutes Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter sp. X561 BACTERIAL Thermoanaerobacter sp. X561 X561 Thermoanaerobacter ethanolicus X561 Gi02563 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 588857 33613 003290_GCAT 59097 0 NZ_ACXP00000000 Draft 89 2380 2478 34 454, Sanger USA deep subsurface sample (2000 m below the surface) taken from a core hole at the Piceance Basin, Colorado USA 2000 meter Anaerobe Rod-shaped Sporulating Thermophile gram+ Free living None Fresh water Motile Bacteria Firmicutes Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter mathranii BACTERIAL Thermoanaerobacter mathranii A3, DSM11426 A3, DSM11426 Thermoanaerobacter mathranii subsp. mathranii str. A3 CIP 108742, AIP 130.05, DSM 11426 Yes Gi02564 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 583358 33329 003291_GCAT 13781 0 NZ_ACVK00000000 Draft 86 2275 2387 37 Sanger, 454 USA Hot spring from Hverdagerdi-Hengil area in Iceland Iceland Hot spring from Hverdagerdi-Hengil area in Iceland Anaerobe Rod-shaped Sporulating Thermophile 4.7 - 8.8 gram+ Free living Hot spring 70 - 75 Motile Bacteria Firmicutes Bacilli Bacillales Bacillaceae Geobacillus Geobacillus sp. Y412MC52 BACTERIAL Geobacillus sp. Y412MC52 Y412MC52 Geobacillus sp. Y412MC52 Gi02565 Genome incomplete Public DOE Joint Genome Institute DOE Mead D dmead@lucigen.com Biotechnological 550542 30797 003292_GCAT 0 NZ_ACNM00000000 Draft Prodigal 72 3563 3681 52 USA Obsidian Hot Spring in Yellowstone National Park USA Yellowstone National Park 44.376262 -110.690383 Facultative Rod-shaped Sporulating Thermophile gram+ Free living None Hot spring, Fresh water Motile Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Bacillaceae Geobacillus Geobacillus sp. Y412MC61 BACTERIAL Geobacillus sp. Y412MC61 Y412MC61 Geobacillus sp. Y412MC61 Gi02566 Genome incomplete Public DOE Joint Genome Institute DOE Mead D dmead@lucigen.com Biotechnological 544556 30537 003293_GCAT 643886205 NZ_ACED00000000 Draft 61 3599 3648 52 USA Obsidian Hot Spring in Yellowstone National Park USA Obsidian Hot Spring in Yellowstone National Park 44.376262 -110.690383 Facultative Rod-shaped Sporulating Mesophile gram+ Free living None Motile Chemoorganotroph Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Geobacteraceae Geobacter Geobacter sp. M18 BACTERIAL Geobacter sp. M18 M18 Geobacter sp. M18 Gi02567 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bioremediation, Biotechnological 443143 33159 003294_GCAT 219097 0 NZ_ACPJ00000000 Draft 152 5165 4537 61 USA Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Sediment Motile Chemolithotroph Archaea ARCHAEAL ANME-1 sp. Gi02568 Metagenome Permanent Draft Public DOE Joint Genome Institute DOE Hallam, S shallam@interchange.ubc.ca http://www.bioinformatics.ubc.ca/faculty/#steven_hallam 28890 003295_GCAT 0 3000 0 55.7 Sanger USA Anaerobe Mesophile Free living None Methanotroph Bacteria Cyanobacteria cyanobiont of Azolla filiculoides BACTERIAL Cyanobiont of Azolla filiculoides Gi02569 Genome incomplete Public DOE Joint Genome Institute DOE Bergman, B Birgitta.Bergman@botan.su.se http://130.237.196.251/Fysiologi/Cyano/Home.htm 320751 003296_GCAT 0 9000 0 41 Sanger, 454 USA Mesophile Symbiotic Azolla filiculoides 84609 Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium cellulovorans BACTERIAL Clostridium cellulovorans 743B, ATCC 35296 743B, ATCC 35296 Clostridium cellulovorans 743B ATCC 35296 Yes Gi02570 Genome incomplete Public DOE Joint Genome Institute DOE Hemme, C hemmecl@ou.edu Biofuels, Biotechnological, Energy production, Bioenergy 573061 32609 003297_GCAT 16224 0 NZ_ACPD00000000 Draft 6x Prodigal 5122 4552 31 Sanger USA cellulose digester ATCC 35296 Anaerobe Rod-shaped Sporulating Mesophile gram- Free living Pairs, Singles None Soil Nonmotile Cellulose degrader Chemoorganotroph Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis BACTERIAL Neisseria meningitidis 053442 053442 C Neisseria meningitidis 053442 Gc00691 Genome Complete and Published Public Microbial Genome Center of ChMPH Jin, Q zdsys@vip.sina.com NMCC 2007-12-03 Genomics 91, 78-87 Medical, Human Pathogen 374833 16393 003298_GCAT 245385 641228498 NC_010120 Complete 2153 2128 1 0 51 China 2003-2005 outbreak of meningococcal disease in China China 2003-2005 outbreak of meningococcal disease in China Homo sapiens Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Septicemia, Meningitis Host Nonmotile Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides dorei BACTERIAL Bacteroides dorei DSM 17855 DSM 17855 Bacteroides dorei DSM 17855 DSM 17855, JCM 13471 Yes Gi02571 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Human Microbiome Project (HMP), Medical 483217 27831 SRP000029 003299_GCAT 115 368488 642979370 ABWZ00000000, NZ_ABWZ00000000 Complete 924337 Newbler post-1.1.03-Dev_01252007 38.5X GeneMark v3.3, Glimmer2 v2.13 288 5487 5038 41 454-FLX USA Human feces DSM 17855 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Human intestinal microflora, Human fecal, Host 37 Nonmotile Non-Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides eggerthii BACTERIAL Bacteroides eggerthii DSM 20697 DSM 20697 Bacteroides eggerthii DSM 20697 DSM 20697, ATCC 27754 Yes Gi02572 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://www.genome.wustl.edu/sub_genome_group.cgi?GROUP=3&SUB_GROUP=4 Human Microbiome Project (HMP), Human Gut Microbiome Initiative (HGMI), Medical 483216 27827 SRP000112 003300_GCAT 116 642979334 NZ_ABVO00000000, ABVO00000000 Complete 1128948 Newbler post-1.1.03-Dev_01252007 60.8X GeneMark v3.3, Glimmer2 v2.13 485 4157 3771 44 454-Titanium USA Human feces DSM 20697 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Human fecal, Host, Human intestinal microflora 37 Nonmotile Non-Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides finegoldii BACTERIAL Bacteroides finegoldii DSM 17565 DSM 17565 Bacteroides finegoldii DSM 17565 DSM 17565, JCM 13345 Yes Gi02573 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://www.genome.wustl.edu/sub_genome_group.cgi?GROUP=3&SUB_GROUP=4 Human Gut Microbiome Initiative (HGMI), Human Microbiome Project (HMP), Medical 483215 27823 003301_GCAT 117 359717 642979319 ABXI00000000, NZ_ABXI00000000 Draft 359568 Newbler 2.0.00.20 17.5X GeneMark v3.3, Glimmer2 v2.13 339 4818 4506 42 454-FLX USA Human feces DSM 17565 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host, Human fecal, Human intestinal microflora 37 Nonmotile Non-Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides plebeius BACTERIAL Bacteroides plebeius DSM 17135 DSM 17135 Bacteroides plebeius DSM 17135 DSM 17135 Yes Gi02574 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://www.genome.wustl.edu/sub_genome_group.cgi?GROUP=3&SUB_GROUP=4 Human Gut Microbiome Initiative (HGMI), Human Microbiome Project (HMP), Medical 484018 27829 SRP000028 003302_GCAT 126 318725 642979351 NZ_ABQC00000000, ABQC00000000 Draft 53346 PCAP 7.9x GeneMark v3.3, Glimmer2 v2.13 30 4421 4024 44 Sanger, 454-GS20 USA Human feces collected in Japan DSM 17135 Japan Human feces collected in Japan Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host, Human intestinal microflora, Human fecal 37 Nonmotile Non-Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium difficile BACTERIAL Clostridium difficile QCD-63q42 QCD-63q42 Clostridium difficile QCD-63q42 Gi02575 Genome incomplete Public McGill Univ Dewar K ken.dewar@mcgill.ca CdifQCD-6 Human Pathogen, Medical 479831 21103 003303_GCAT 269830 641736217 NZ_ABHD00000000 Draft 4426 4331 28 Canada 67 year old male patient with severe CDAD in Quebec in 2005 2005 Canada 67 year old male patient with severe CDAD in Quebec in 2005 Homo sapiens Male 67 years old Patient patient with severe CDAD Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains, Pairs, Singles Host Motile Pathogen Chemoorganotroph Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii ARCHAEAL Methanobrevibacter smithii DSM 2375 DSM 2375 Methanobrevibacter smithii DSM 2375 DSM 2375 No Gi02576 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://www.genome.wustl.edu/sub_genome_group.cgi?GROUP=3&SUB_GROUP=4 Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 483214 27821 003304_GCAT 566 643886144 ABYW00000000, NZ_ABYW00000000 Complete Newbler 2.0.00.20 49X GeneMark v3.3, Glimmer2 v2.13 24 1704 1709 31 454-FLX USA human large intestine DSM 2375 human large intestine Homo sapiens Gastrointestinal tract Intestinal tract Anaerobe Rod-shaped Mesophile gram+ Free living Chains, Pairs None Human intestinal microflora, Host 37 - 40 Nonmotile Non-Pathogen, Methanogen Lithotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium intracellulare BACTERIAL Mycobacterium intracellulare ATCC 13950 ATCC 13950 Mycobacterium intracellulare ATCC 13950 ATCC 13950 Yes Gi02577 Genome incomplete Public McGill Univ Dewar K ken.dewar@mcgill.ca Animal Pathogen, Human Pathogen, Medical 487521 27955 003305_GCAT 0 NZ_ABIN00000000 Draft 5328 0 67 Canada Lymph node of child with disseminated infection Lymph node of child with disseminated infection Homo sapiens child Patient with disseminated infection Lymph nodes Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Pulmonary infection Host Nonmotile Pathogen Chemoorganotroph Bacteria Proteobacteria Deltaproteobacteria Myxococcales Myxococcaceae Myxococcus Myxococcus fulvus BACTERIAL Myxococcus fulvus HW-1 HW-1 Myxococcus fulvus HW-1 ATCC BAA-855 Gi02578 Genome incomplete Public Shandong Univ Biotechnological 483219 27837 003306_GCAT 47762 0 0 0 0 China Seawater in China China Seawater in China Aerobe Rod-shaped Mesophile gram- Free living Singles None Marine Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 EC4401 EC4401 Escherichia coli O157:H7 str. EC4401 Gi02579 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Ravel J EcoliO Human Pathogen, Medical 478004 27749 003307_GCAT 292182 641736116 NZ_ABHR00000000 Draft 5733 6557 50 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Hemorrhagic colitis, Diarrhea Human intestinal microflora, Host 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 EC4486 EC4486 Escherichia coli O157:H7 str. EC4486 Gi02580 Genome incomplete Public J. Craig Venter Institute NCBI, NIH-NIAID Ravel J EcolO157 Human Pathogen, Medical 478005 27751 003308_GCAT 298143 641736222 NZ_ABHS00000000 Draft 5933 6783 50 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Hemorrhagic colitis, Diarrhea Host, Human intestinal microflora 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 EC4501 EC4501 Escherichia coli O157:H7 str. EC4501 Gi02581 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Ravel J EcolO15 Human Pathogen, Medical 478006 27753 003309_GCAT 290554 641736225 NZ_ABHT00000000 Draft 5677 6523 50 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Hemorrhagic colitis, Diarrhea Human intestinal microflora, Host 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 EC508 EC508 Escherichia coli O157:H7 str. EC508 ATCC 43889 Gi02582 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Ravel J EcolO Human Pathogen, Medical 478007 27755 003310_GCAT 271358 641736226 NZ_ABHW00000000 Draft 5656 6443 50 USA Feces of patient with hemolytic uremic syndrome Feces of patient with hemolytic uremic syndrome Homo sapiens Patient with hemolytic uremic syndrome Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea, Hemorrhagic colitis Host, Human intestinal microflora 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 EC869 EC869 Escherichia coli O157:H7 str. EC869 Gi02583 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Ravel J EcolO1 Human Pathogen, Medical 478008 27757 003311_GCAT 291749 641736224 NZ_ABHU00000000 Draft 5731 6505 50 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea, Hemorrhagic colitis Human intestinal microflora, Host 37 Motile Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium papyrosolvens BACTERIAL Clostridium papyrosolvens DSM 2782 DSM 2782 Clostridium papyrosolvens DSM 2782 NCIB 11394, DSM 2782, ATCC 35413 Yes Gi02584 Genome incomplete Public DOE Joint Genome Institute Bruce D microbes@cuba.jgi-psf.org 588581 33587 003312_GCAT 15957 0 NZ_ACXX00000000 Draft 121 4874 4479 36 USA estuarine sediment, River Don, Aberdeenshire, Scotland Christopher L. Hemme (hemmecl@ou.edu) United Kingdom Intertidal mud from Don river in Scotland 57.162143 -2.719417 Anaerobe Rod-shaped Sporulating Mesophile gram- Free living Pairs, Singles Mud 25 Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium BACTERIAL Clostridium saccharolyticum WM1, DSM 2544 WM1, DSM 2544 DSM 2544, ATCC 35040, NRC 2533 Yes Gi02585 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biofuels, Biotechnological, Ethanol production 84030 003313_GCAT 52311 0 In progress 0 0 0 USA Sewage sludge in Canada Canada Sewage sludge in Canada Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Singles, Pairs None Sludge 37 Motile Cellulose degrader, Ethanol production Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sp. BACTERIAL Clostridium sp. 14 14 Gi02586 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 1506 003314_GCAT 14269 0 0 0 0 USA Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sp. BACTERIAL Clostridium sp. 15 15 Gi02587 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 1506 003315_GCAT 14269 0 0 0 0 USA Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sp. BACTERIAL Clostridium sp. 16 16 Gi02588 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 1506 003316_GCAT 14269 0 0 0 0 USA Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sp. BACTERIAL Clostridium sp. 17 17 Gi02589 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 1506 003317_GCAT 14269 0 0 0 0 USA Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sp. BACTERIAL Clostridium sp. 18 18 Gi02590 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 1506 003318_GCAT 14269 0 0 0 0 USA Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sp. BACTERIAL Clostridium sp. 19 19 Gi02591 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 1506 003319_GCAT 14269 0 0 0 0 USA Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sp. BACTERIAL Clostridium sp. 20 20 Gi02592 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 1506 003320_GCAT 14269 0 0 0 0 USA Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium thermocellum BACTERIAL Clostridium thermocellum DSM 2360 DSM 2360 Clostridium thermocellum DSM 2360 ATCC 35609, DSM 2360 No Gi02594 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bioenergy, Biofuels, Biotechnological 572545 32579 003322_GCAT 0 NZ_ACVX00000000 Draft 110 3454 3146 39 Sanger, 454 USA contaminant of Clostridium thermocellum strain LQ8 USA contaminant of Clostridium thermocellum strain LQ8 Anaerobe Rod-shaped Sporulating Thermophile gram+ Free living Chains, Pairs, Singles None 60 Motile Cellulose degrader, Ethanol production, Ethanogenic Chemoorganotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae BACTERIAL Acidovorax sp. Unknown Gi02596 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 12916 003324_GCAT 9 0 0 0 0 USA Human skin Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human intestinal microflora Motile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter BACTERIAL Acinetobacter haemolyticus ATCC 19194 ATCC 19194 ATCC 19194 No Gi02597 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Human Microbiome Project (HMP), Medical 29430 003325_GCAT 15 276866 0 0 0 0 USA Human nasal sample ATCC Human nasal sample Homo sapiens Airways Nasal Aerobe Rod-shaped Mesophile gram- Free living Pairs Human airways, Host Nonmotile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter sp. ATCC 27244 BACTERIAL Acinetobacter sp. ATCC 27244 ATCC 27244 Acinetobacter sp. ATCC 27244 ATCC 27244 Unknown Gi02599 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Human Microbiome Project (HMP), Medical 525244 30949 SRS000858 003327_GCAT 23 643886214 NZ_ABYN00000000, ABYN01000000 Complete 565502 Newbler/1.1.03.24 27.09X 255 3330 3396 39 454-FLX, Illumina USA Chronic wounds ATCC USA Chronic wounds Homo sapiens Skin Aerobe Coccus-shaped Mesophile gram- Free living Pairs Human skin, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces Actinomyces coleocanis BACTERIAL Actinomyces coleocanis DSM 15436 DSM 15436 Actinomyces coleocanis DSM 15436 DSM 15436 Yes Gi02601 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Human Microbiome Project (HMP), Medical 525245 31427 SRS001905 003329_GCAT 44 46191 643886017 ACFG00000000, NZ_ACFG00000000 Complete 223952 Newbler/1.1.03.24 11x 40 1719 1601 0 Illumina, 454 USA Human vaginal flora DSM 12148628 Human vaginal flora Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Human vaginal microflora, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces Actinomyces urogenitalis BACTERIAL Actinomyces urogenitalis DSM 15434 DSM 15434 Actinomyces urogenitalis DSM 15434 DSM 15434 Yes Gi02602 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Human Microbiome Project (HMP), Medical 525246 31429 003330_GCAT 58 40580 643886015 ACFH00000000, NZ_ACFH00000000 Complete 291202 Newbler/1.1.03.24 26.28X 260 2614 2457 68 Illumina, 454-FLX USA Human vaginal flora DSM Human vaginal flora Homo sapiens Female Urogenital tract Vaginal Microaerophilic Rod-shaped Nonsporulating Mesophile gram+ Free living Urogenital tract, Host, Human vaginal microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Aerococcaceae Aerococcus BACTERIAL Aerococcus viridans ATCC 11563 ATCC 11563 DSM 20340, NCTC 8251, ATCC 11563 Yes Gi02603 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Human Microbiome Project (HMP), Medical 1377 38729 003331_GCAT 61 15075 0 In progress 0 0 0 USA Air sample ATCC Homo sapiens Female Associated with BV Urogenital tract Vaginal Microaerophilic Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs Host, Human vaginal microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Nocardioidaceae Aeromicrobium Aeromicrobium marinum BACTERIAL Aeromicrobium marinum DSM 15272 DSM 15272 Aeromicrobium marinum DSM 15272 LMG 21768, DSM 15272 Yes Gi02604 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Human Microbiome Project (HMP), Medical 585531 34545 003332_GCAT 63 84596 0 NZ_ACLF00000000, ACLF00000000 Draft 1247 2587 0 70 454-FLX USA Human oral sample DSM Human oral sample Homo sapiens Oral Microaerophilic Coccus-shaped Mesophile gram+ Free living Human oral microflora, Marine, Host Heterotroph Bacteria Bacteroidetes Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes sp. 10_1_37FAA BACTERIAL Alistipes sp. 10_1_37FAA 10_1_37FAA Alistipes sp. 10_1_37FAA BEI Shipping Unknown Gi02606 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/seq/msc/ Medical, Human Microbiome Project (HMP) 457386 003334_GCAT 68 0 In progress 0 0 0 454-FLX, Sanger USA Human feces Emma Allen-Vercoe, U. Guelph, Canada Human gut sample Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human intestinal microflora Nonmotile Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Anaerococcus Anaerococcus hydrogenalis BACTERIAL Anaerococcus hydrogenalis DSM 7454 DSM 7454 Anaerococcus hydrogenalis DSM 7454 DSM 7454, ATCC 49630, JCM 7635 Yes Gi02608 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Medical, Human Gut Microbiome Initiative (HGMI), Human Microbiome Project (HMP) 561177 30747 003336_GCAT 71 359171 642979323 ABXA01000000, NZ_ABXA00000000 Complete 629619 Newbler 2.0.0-PreRelease-04/10/2008 86.8X GeneMark v3.3, Glimmer2 v2.13 201 1889 2126 29 454-Titanium USA Human feces DSM 7454 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs Human intestinal microflora, Host 37 Nonmotile Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Anaerococcus Anaerococcus lactolyticus BACTERIAL Anaerococcus lactolyticus ATCC 51172 ATCC 51172 Anaerococcus lactolyticus ATCC 51172 DSM 7456, JCM 8140, ATCC 51172 Yes Gi02610 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu http://www.bcm.edu/genetics/facultyaz/weinstock.html Human Microbiome Project (HMP), Medical 525254 30951 SRS000859 003338_GCAT 72 643886145 ABYO01000000, NZ_ABYO00000000 Complete 459843 Newbler/1.1.03.24 54.53X 277 2177 2306 34 Illumina, 454-FLX USA Human vaginal discharge ATCC Human vaginal discharge Homo sapiens Female Urogenital tract Vaginal secretions Vaginal Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs Human vaginal microflora, Host 37 Nonmotile Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Anaerococcus Anaerococcus tetradius BACTERIAL Anaerococcus tetradius ATCC 35098 ATCC 35098 Anaerococcus tetradius ATCC 35098 ATCC 35098 Yes Gi02612 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525255 31433 003340_GCAT 77 85988 643886055 ACGC00000000, NZ_ACGC00000000 Complete 644577 Newbler/1.1.03.24 70.63X 161 2103 2138 34.2 Illumina, 454-FLX USA Human vaginal flora, associated with BV ATCC Human vaginal flora, associated with BV Homo sapiens Female Patient with BV Urogenital tract Vaginal Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs Human vaginal microflora, Host Nonmotile Bacteria Firmicutes Bacilli Bacillales Paenibacillaceae Aneurinibacillus Aneurinibacillus aneurinilyticus BACTERIAL Aneurinibacillus aneurinilyticus DSM 5562 DSM 5562 IFO 15521, IAM 1077, NBRC 15521, JCM 9024, DSM 5562, ATCC 12856, CIP 104007 Yes Gi02613 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Microbiome Project (HMP), Medical 649747 38313 003341_GCAT 83 14458 0 In progress 0 0 43.3 USA Human fecal sample DSM 5562 Human fecal sample Homo sapiens Gastrointestinal tract Feces Mesophile gram+ Free living Host, Human fecal, Human intestinal microflora Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Atopobium Atopobium vaginae BACTERIAL Atopobium vaginae ATCC BAA-55 ATCC BAA-55 Atopobium vaginae DSM 15829 CIP 106431, CCUG 38953, DSM 15829, ATCC BAA-55 Yes Gi02616 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525256 31435 SRS001939 003344_GCAT 91 154739 643886063 NZ_ACGK00000000, ACGK00000000 Complete 289041 Newbler/1.1.03.24 37.99X 31 1433 1323 42 454-FLX USA Human vaginal flora DSM Human vaginal flora Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Host, Human vaginal microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides pectinophilus BACTERIAL Bacteroides pectinophilus ATCC 43243 ATCC 43243 Bacteroides pectinophilus ATCC 43243 ATCC 43243 Yes Gi02617 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Microbiome Project (HMP), Medical 483218 27825 003345_GCAT 124 642979337 ABVQ00000000, NZ_ABVQ00000000 Complete 1382161 PCAP 40.8X GeneMark v3.3, Glimmer2 v2.13 136 3025 3296 41 454-FLX USA Human feces ATCC 43243 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Human fecal, Human intestinal microflora, Host 35 - 40 Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides galacturonicus BACTERIAL Bacteroides galacturonicus ATCC 43244 ATCC 43244 ATCC 43244 Yes Gi02621 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Microbiome Project (HMP), Medical 649752 38315 003349_GCAT 121 160063 0 In progress 0 0 0 USA Human fecal sample ATCC 43244 3777933 Homo sapiens Gastrointestinal tract Feces Mesophile gram- Free living None Host, Human fecal, Human intestinal microflora Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis A0174, 74-412C-8; K1979 A0174, 74-412C-8; K1979 Bacillus anthracis str. A0174 Gi02624 Genome incomplete Public Los Alamos National Laboratory, DOE Joint Genome Institute Brettin T brettin@lanl.gov BAO Medical, Animal Pathogen 486622 27921 003352_GCAT 269972 641736251 NZ_ABLT00000000 Draft 5291 5401 35.2 USA In Canada Canada In Canada Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains, Pairs, Singles Anthrax Motile Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis A0193, 96-10355; K1256 A0193, 96-10355; K1256 Bacillus anthracis str. A0193 Gi02625 Genome incomplete Public Los Alamos National Laboratory, DOE Joint Genome Institute Brettin T brettin@lanl.gov BAQ Animal Pathogen, Medical, Cattle Pathogen 486619 27923 003353_GCAT 269224 641736158 NZ_ABKF00000000 Draft 7x 5392 5520 35 USA Bovine isolate obtained in South Dakota, USA USA South Dakota, USA Cow Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains, Pairs, Singles Anthrax Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis A0389, Bekasi; 89; K1938 A0389, Bekasi; 89; K1938 Bacillus anthracis str. A0389 Gi02626 Genome incomplete Public Los Alamos National Laboratory, DOE Joint Genome Institute Brettin T brettin@lanl.gov BAK Medical, Animal Pathogen 486623 27917 003354_GCAT 265640 641736155 NZ_ABLB00000000 Draft 10x 5420 5529 35.2 USA "Bekasi, Indonesia" Indonesia Bekasi, Indonesia -6.247447 107.148452 Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains, Pairs, Singles Anthrax Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis A0442, K88 A0442, K88 Bacillus anthracis str. A0442 Gi02627 Genome incomplete Public Los Alamos National Laboratory, DOE Joint Genome Institute Brettin T brettin@lanl.gov BAH Medical, Animal Pathogen 486621 27915 003355_GCAT 260892 641736159 NZ_ABKG00000000 Draft 9x 5374 5499 35 USA "Kudu isolate obtained in the Kruger National Park, South Africa" South Africa Kruger National Park, South Africa -23.821424 31.445618 Homo sapiens Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains, Pairs, Singles Anthrax Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis A0465, LSU465; RA3; K2762 A0465, LSU465; RA3; K2762 Bacillus anthracis str. A0465 Gi02628 Genome incomplete Public Los Alamos National Laboratory, DOE Joint Genome Institute Brettin T brettin@lanl.gov BAM Animal Pathogen, Medical, Cattle Pathogen 486620 27919 003356_GCAT 266355 641736250 NZ_ABLH00000000 Draft 5407 5529 35.2 USA Bovine isolate obtained from France France Bovine isolate obtained from France Bovine Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains, Pairs Anthrax Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis A0488, K4596 A0488, K4596 Bacillus anthracis str. A0488 ATCC 14578 Yes Gi02629 Genome incomplete Public Los Alamos National Laboratory, DOE Joint Genome Institute Bruce D microbes@cuba.jgi-psf.org BAC Animal Pathogen, Medical, Cattle Pathogen 486624 27913 003357_GCAT 267636 641736173 NZ_ABJC00000000 Draft 5392 5509 0 USA Infected cattle in the United Kingdom in 1935 1935 UK Infected cattle in the United Kingdom in 1935 Cattle Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains, Pairs, Singles Anthrax Motile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae Hungary 19A-6 Hungary 19A-6 Streptococcus pneumoniae Hungary19A-6 ATCC 700673 No Gc00735 Gi02630 Genome Complete and Published Public J. Craig Venter Institute Tettelin H tettelin@tigr.org http://www.tigr.org/~tettelin/ SPH 2008-02-27 Unpublished Medical, Human Pathogen 487214 28035 003358_GCAT 266611 641522652 NC_010380 Complete 2245 2292 1 0 39.6 USA Human ear, Hungary penicillin resistant strain 1989 Hungary Homo sapiens Ear Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Host Nonmotile Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 1_1_30 BACTERIAL Bacteroides sp. 1_1_30 1_1_30 BEI HM-22 Unknown Gi02633 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 457387 003361_GCAT 127 0 DNA Received 0 0 0 USA Human feces Emma Allen-Vercoe, U. Guelph, Canada Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Human fecal, Host, Human intestinal microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 1_1_6 BACTERIAL Bacteroides sp. 1_1_6 1_1_6 Bacteroides sp. 1_1_6 BEI HM-23 Unknown Gi02634 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 469586 32435 003362_GCAT 128 0 NZ_ACIC00000000, ACIC00000000 Complete 12.12x 263 6695 5560 43 454 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Human fecal sample Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human fecal, Human intestinal microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 2_1_16 BACTERIAL Bacteroides sp. 2_1_16 2_1_16 BEI HM-58 Unknown Gi02635 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 469587 38347 003363_GCAT 101 1973 0 In progress 0 0 0 USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 2_1_22 BACTERIAL Bacteroides sp. 2_1_22 2_1_22 BEI HM-18 Unknown Gi02636 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 469588 38349 003364_GCAT 102 1973 0 In progress 0 0 0 USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 2_1_33B BACTERIAL Bacteroides sp. 2_1_33B 2_1_33B BEI HM-59 Unknown Gi02637 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 469589 38351 003365_GCAT 103 1973 0 In progress 0 0 0 USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 2_1_7 BACTERIAL Bacteroides sp. 2_1_7 2_1_7 Bacteroides sp. 2_1_7 BEI HM-24 Unknown Gi02638 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 457388 32437 003366_GCAT 129 1973 0 NZ_ABZY00000000, ABZY00000000 Complete 106 5137 4442 45 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Human fecal sample Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Human intestinal microflora, Host, Human fecal Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 2_2_4 BACTERIAL Bacteroides sp. 2_2_4 2_2_4 Bacteroides sp. 2_2_4 BEI HM-25 Unknown Gi02639 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 469590 32439 003367_GCAT 130 0 ABZZ00000000, NZ_ABZZ00000000 Complete 204 7004 6030 42.1 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Human fecal sample Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Human intestinal microflora, Host, Human fecal Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis BACTERIAL Bacteroides sp. 3_1_12 3_1_12 Bacteroides fragilis 3_1_12 BEI HM-20 Unknown Gi02641 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 457424 32433 003369_GCAT 118 1973 0 NZ_ABZX00000000, ABZX00000000 Complete 104 5486 4842 43 USA Human gastrointestinal tract sample Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides BACTERIAL Bacteroides sp. 3_1_19 3_1_19 BEI HM-19 Unknown Gi02643 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 29523 003371_GCAT 104 1973 0 DNA Received 0 0 0 USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 3_1_33FAA BACTERIAL Bacteroides sp. 3_1_33FAA 3_1_33FAA BEI HM-63 Unknown Gi02645 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 457391 38353 003373_GCAT 105 1973 0 In progress 0 0 0 USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 3_2_5 BACTERIAL Bacteroides sp. 3_2_5 3_2_5 Bacteroides sp. 3_2_5 BEI HM-67 Unknown Gi02647 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 457392 32441 003375_GCAT 131 1973 0 ACIB00000000, NZ_ACIB00000000 Complete 31.62x 115 5131 4570 43 454 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Human fecal sample Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Human fecal, Human intestinal microflora, Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 4_3_47FAA BACTERIAL Bacteroides sp. 4_3_47FAA 4_3_47FAA Bacteroides sp. 4_3_47FAA BEI HM-26 Unknown Gi02649 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 457394 32443 003377_GCAT 132 1973 0 ACDR00000000, NZ_ACDR00000000 Complete 22.03x 212 5344 4679 42.7 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Human fecal sample Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human fecal, Human intestinal microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 9_1_42FAA BACTERIAL Bacteroides sp. 9_1_42FAA 9_1_42FAA Bacteroides sp. 9_1_42FAA BEI Shipping Unknown Gi02650 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 457395 32445 003378_GCAT 133 1973 0 ACAA00000000, NZ_ACAA00000000 Complete 121 5577 4935 42.3 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Human fecal sample Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human intestinal microflora, Human fecal Nonmotile Bacteria Proteobacteria Deltaproteobacteria Bdellovibrionales Bdellovibrionaceae Bdellovibrio Bdellovibrio sp. BACTERIAL Bdellovibrio sp. AF148938 AF148938 Unknown Gi02651 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 28201 003379_GCAT 158 0 Targeted 0 0 0 USA Human skin Blaser Human skin Homo sapiens Skin Anaerobe Curved-shaped Nonsporulating Mesophile gram- Free living Human skin, Host Motile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium angulatum BACTERIAL Bifidobacterium angulatum DSM 20098 DSM 20098 Bifidobacterium angulatum DSM 20098 DSM 20098, ATCC 27535 Yes Gi02652 Genome incomplete Public Washington Univ NIH-NHGRI Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 518635 29261 003380_GCAT 160 642979361 ABYS00000000, NZ_ABYS00000000 Draft 283499 Newbler 2.0.00.20 27.9X GeneMark v3.3, Glimmer2 v2.13 40 2000 1903 59 454-FLX USA Human feces DSM 20098 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Human fecal, Human intestinal microflora, Host 37 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium BACTERIAL Bifidobacterium bifidum DSM 20456 DSM 20456 Bifidobacterium bifidum DSM 20456 ATCC 29521, DSM 20456, JCM 1255 Yes Gi02653 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://www.genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 1681 28655 003381_GCAT 161 102411 0 In progress 0 0 0 USA Feces of breast-fed infant DSM 20456 Feces of breast-fed infant Homo sapiens Infant Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Human intestinal microflora, Host, Human fecal 37 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium breve BACTERIAL Bifidobacterium breve DSM 20213 DSM 20213 Bifidobacterium breve DSM 20213 DSM 20213, NCTC 11815, ATCC 15700 Yes Gi02654 Genome incomplete Public Washington Univ NIH-NHGRI Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 518634 29259 003382_GCAT 164 643886102 ACCG00000000, NZ_ACCG00000000 Draft 303648 Newbler 2.0.00.20 25.5X GeneMark v3.3, Glimmer2 v2.13 111 2297 2309 58 454-FLX USA Intestine of infant DSM 20213 Intestine of infant Homo sapiens Infant Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Human fecal, Host, Human intestinal microflora 37 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium catenulatum BACTERIAL Bifidobacterium catenulatum DSM 16992 DSM 16992 Bifidobacterium catenulatum DSM 16992 DSM 16992, ATCC 27539, DSM 20103, CIP 104175 Yes Gi02655 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 566552 30749 003383_GCAT 165 364138 642979312 NZ_ABXY00000000, ABXY00000000 Complete 299013 Newbler 2.0.00.20 55.8X GeneMark v3.3, Glimmer2 v2.13 31 2058 2011 56 454-FLX USA Human fecal sample DSM16992 Human fecal sample Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Human fecal, Host, Human intestinal microflora 37 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium gallicum BACTERIAL Bifidobacterium gallicum DSM 20093 DSM 20093 Bifidobacterium gallicum DSM 20093 ATCC 49850, DSM 20093, JCM 8224 Yes Gi02656 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 561180 30751 003384_GCAT 172 642979324 ABXB00000000, NZ_ABXB00000000 Complete 646509 Newbler 2.0.0-PreRelease-04/10/2008 91.1X GeneMark v3.3, Glimmer2 v2.13 277 20163 2045 57 454-Titanium USA intestine of adult DSM 20093 intestine of adult Homo sapiens Adult Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Host, Human intestinal microflora 37 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium bifidum BACTERIAL Bifidobacterium bifidum NCIMB 41171 NCIMB 41171 Bifidobacterium bifidum NCIMB 41171 Unknown Gi02657 Genome incomplete Public Broad Institute Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 398513 30055 003385_GCAT 162 643886040 ABQP00000000, NZ_ABQP00000000 Complete 33x 33 2186 1888 62 USA Human feces Emma Allen-Vercoe, U. Guelph, Canada Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Human fecal, Host, Human intestinal microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium dentium BACTERIAL Bifidobacterium dentium JCVIHMP023 JCVIHMP023 Bifidobacterium dentium JCVIHMP023 Unknown Gi02658 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 553192 31397 003386_GCAT 893 12612 0 In progress 0 0 0 USA Human oral microflora Human oral microflora Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Host, Human oral microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum BACTERIAL Bifidobacterium longum infantis CCUG 52486 CCUG 52486 Bifidobacterium longum subsp. infantis CCUG 52486 CCUG 52486 Unknown Gi02659 Genome incomplete Public Broad Institute Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 537937 30065 003387_GCAT 173 643886216 NZ_ABQQ00000000, ABQQ00000000 Complete 34x 55 2453 2178 60 USA feces from healthy eldery humans Delphine Saulnier, Baylor, saulnier@bcm.edu feces from healthy eldery humans Homo sapiens Elderly Healthy Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains, Singles None Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pseudocatenulatum BACTERIAL Bifidobacterium pseudocatenulatum DSM 20438 DSM 20438 Bifidobacterium pseudocatenulatum DSM 20438 DSM 20438, ATCC 27919, JCM 1200, LMG 10505 Yes Gi02660 Genome incomplete Public Washington Univ Weinstock G gweinsto@watson.wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 547043 30373 003388_GCAT 176 366993 642979313 NZ_ABXX00000000, ABXX00000000 Draft 298122 Newbler 2.0.00.20 50.7X 37 2304 2220 56 454-Titanium USA normal human gut microbial flora DSM 20438 normal human gut microbial flora Homo sapiens Infant Healthy Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium sp. BACTERIAL Bifidobacterium sp. 12_1_47BFAA 12_1_47BFAA BEI HM-30 Unknown Gi02661 Genome incomplete Public Broad Institute Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Human Microbiome Project (HMP), Medical 41200 003389_GCAT 177 12630 0 DNA Received 0 0 0 USA Human feces Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Brevibacteriaceae Brevibacterium Brevibacterium mcbrellneri BACTERIAL Brevibacterium mcbrellneri ATCC 49030 ATCC 49030 Brevibacterium mcbrellneri ATCC 49030 ATCC 49030 Yes Gi02663 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 585530 34583 003391_GCAT 183 12511 0 In progress 304726 Newbler/2.0-022309 25.6X 2076 0 0 0 USA Human urogentical sample ATCC Homo sapiens Urogenital tract Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Brevibacteriaceae Brevibacterium BACTERIAL Brevibacterium paucivorans Unknown Gi02664 Genome targeted Public DOE Medical, Human Microbiome Project (HMP) 170994 003392_GCAT 184 247720 0 Targeted 0 0 0 USA Human skin sample Blaser Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Host Nonmotile Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Butyrivibrio Butyrivibrio crossotus BACTERIAL Butyrivibrio crossotus DSM 2876 DSM 2876 Butyrivibrio crossotus DSM 2876 ATCC 29175, DSM 2876 Yes Gi02667 Genome incomplete Public Washington Univ NIH Weinstock G gweinsto@watson.wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 511680 28999 003395_GCAT 190 0 NZ_ABWN00000000, ABWN00000000 Draft 21.4x 51 2482 0 37 454 USA Human feces DSM 2876 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Human fecal, Host, Human intestinal microflora Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Cedecea Cedecea davisae BACTERIAL Cedecea davisae DSM 4568 DSM 4568 DSM 4568 Yes Gi02671 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 566551 30753 003399_GCAT 201 82917 0 In progress 0 0 0 USA Human feces collected in USA DSM 4568 USA Human feces Homo sapiens Gastrointestinal tract Feces Mesophile gram- Free living Human fecal, Host, Human intestinal microflora Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Cetobacterium BACTERIAL Cetobacterium somerae CCUG 46254 CCUG 46254 CCUG 46254, ATCC BAA-474, WAL 14325 Yes Gi02672 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 188913 003400_GCAT 202 99826 0 0 0 31 USA Human feces collected from an autisic child CCUG 46254 Human feces Homo sapiens Child Autistic Gastrointestinal tract Feces Rod-shaped Nonsporulating Mesophile gram- Free living Human fecal, Host, Human intestinal microflora Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Chryseobacterium Chryseobacterium gleum BACTERIAL Chryseobacterium gleum ATCC 35910 ATCC 35910 Chryseobacterium gleum ATCC 35910 IFO 15054, NCTC 11432, ATCC 35910, JCM 2410, CL4/79 Yes Gi02674 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Human Microbiome Project (HMP), Medical 525257 30953 SRS000860 003402_GCAT 204 643886082 ACKQ00000000, NZ_ACKQ00000000 Draft 954137 Newbler/1.1.03.24 31.57X 76 5562 5375 36 454-FLX, Illumina USA high vaginal swab from England ATCC United Kingdom high vaginal swab from England Homo sapiens Urogenital tract Vaginal swab Vaginal Aerobe Mesophile gram- Free living Host 30 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Citrobacter Citrobacter youngae BACTERIAL Citrobacter youngae ATCC 29220 ATCC 29220 Citrobacter youngae ATCC 29220 ATCC 29220, CDC 1885/75 Unknown Gi02675 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://www.genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 500640 28665 SRP000339 003403_GCAT 210 250048 643886075 ABWL00000000, NZ_ABWL00000000 Draft 779075 Newbler 2.0.0-PreRelease-04/10/2008 32.4X GeneMark v3.3, Glimmer2 v2.13 667 5143 4853 52 454-FLX USA Human feces ATCC 29220 Human feces Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Mesophile gram- Free living None Human fecal, Host, Human intestinal microflora Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Citrobacter Citrobacter sp. 30_2 BACTERIAL Citrobacter sp. 30_2 30_2 Citrobacter sp. 30_2 BEI HM-34 Unknown Gi02676 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 469595 32453 003404_GCAT 207 0 NZ_ACDJ00000000, ACDJ00000000 Complete 26.61x 61 5100 4800 51 454 USA Human feces Emma Allen-Vercoe, U. Guelph, Canada Human feces Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Mesophile gram- Free living Human fecal, Host, Human intestinal microflora Motile Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium celatum BACTERIAL Clostridium celatum DSM 1785 DSM 1785 Clostridium celatum DSM 1785 DSM 1785, ATCC 27791 Yes Gi02677 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 545697 30375 003405_GCAT 216 16230 0 In progress 0 0 0 USA Human feces DSM 1785 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Human fecal, Host, Human intestinal microflora Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium asparagiforme BACTERIAL Clostridium asparagiforme DSM 15981 DSM 15981 Clostridium asparagiforme DSM 15981 CCUG 48471, DSM 15981 Yes Gi02678 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 518636 29263 003406_GCAT 213 643886112 ACCJ00000000, NZ_ACCJ00000000 Draft 369540 Newbler 2.0.0-PostRelease-10/28/2008 14.3X 610 6224 6881 53 USA Human feces DSM 15981 Human feces Homo sapiens Gastrointestinal tract Feces Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Human fecal, Host, Human intestinal microflora Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium hathewayi BACTERIAL Clostridium hathewayi DSM 13479 DSM 13479 Clostridium hathewayi DSM 13479 DSM 13479, CCUG 43506 Yes Gi02679 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 566550 30755 003407_GCAT 223 90431 0 NZ_ACIO00000000, ACIO00000000 Draft 14.2x 1294 6626 0 48 454 USA Human feces collected in UK DSM 13479 United Kingdom 11822669 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Host, Human intestinal microflora Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium hiranonis BACTERIAL Clostridium hiranonis DSM 13275 DSM 13275 Clostridium hiranonis DSM 13275 DSM 13275, JCM 10541 Yes Gi02680 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 500633 28657 SRP000371 003408_GCAT 224 111378 642979371 ABWP00000000, NZ_ABWP00000000 Draft 1029885 Newbler post-1.1.03-Dev_01252007 95.1X GeneMark v3.3, Glimmer2 v2.13 190 2423 2304 31 454-FLX USA Human feces Collected in Japan DSM 13275 Japan Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Host, Human intestinal microflora Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium methylpentosum BACTERIAL Clostridium methylpentosum R2, DSM 5476 R2, DSM 5476 Clostridium methylpentosum DSM 5476 DSM 5476, ATCC 43829 Yes Gi02682 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 537013 30029 003410_GCAT 228 36271 643886206 NZ_ACEC00000000, ACEC00000000 Complete 336936 Newbler 2.0.00.20 22X 146 3406 3964 51.8 454-FLX USA Human feces DSM 5476 2742449 Human feces Homo sapiens Gastrointestinal tract Feces Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Host, Human intestinal microflora Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium nexile BACTERIAL Clostridium nexile DSM 1787 DSM 1787 Clostridium nexile DSM 1787 DSM 1787 Yes Gi02683 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://www.genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 500632 28659 SRP000372 003411_GCAT 229 14036 642979369 NZ_ABWO00000000, ABWO00000000 Draft 603783 Newbler 2.0.0-PreRelease-04/10/2008 33.6X GeneMark v3.3, Glimmer2 v2.13 1073 3861 4301 40 454-FLX USA Human feces from healthy individual DSM 1787 Human feces Homo sapiens Healthy Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Singles, Pairs None Host, Human intestinal microflora Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium orbiscindens BACTERIAL Clostridium orbiscindens DSM 6740 DSM 6740 DSM 6740 Yes Gi02685 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Anticancer agent, Medical, Human Microbiome Project (HMP), Human Gut Microbiome Initiative (HGMI) 649753 38317 003413_GCAT 231 32020 0 In progress 497050 Newbler/1.1.03.24 74x 0 0 56 454-FLX USA Human feces DSM 6740 Human feces Homo sapiens Gastrointestinal tract Feces Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Singles, Pairs None Host, Human intestinal microflora Motile Beta-hemolytic, Saccharolytic Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales butyrate-producing bacterium A2-166 BACTERIAL Clostridium sp. A2-166 A2-166 butyrate-producing bacterium A2-166 Unknown Gi02684 Genome targeted Public NIH Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 105842 003412_GCAT 904 14269 0 Targeted 0 0 0 USA Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Host Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sp. BACTERIAL Clostridium sp. SR1/1 SR1/1 Unknown Gi02690 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 1506 003418_GCAT 255 14269 0 0 0 0 USA Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Host Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sp. ATCC BAA-442 BACTERIAL Clostridium sp. ATCC BAA-442 ATCC BAA-442 ATCC BAA-442 Unknown Gi02691 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 649724 38735 003419_GCAT 239 14269 0 In progress 0 0 0 USA Human feces from healthy individual ATCC BAA-442 Homo sapiens Healthy Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Host Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sp. 7_2_43FAA BACTERIAL Clostridium sp. 7_2_43FAA 7_2_43FAA Clostridium sp. 7_2_43FAA BEI HM-36 Unknown Gi02692 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 457396 32457 003420_GCAT 236 14269 0 ACDK00000000, NZ_ACDK00000000 Complete 29.68x 132 3779 3512 27.7 454 USA Human feces Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Host Motile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Collinsella Collinsella intestinalis BACTERIAL Collinsella intestinalis DSM 13280 DSM 13280 Collinsella intestinalis DSM 13280 RCA56-68, JCM 10643, DSM 13280 Yes Gi02693 Genome incomplete Public Washington Univ NIH-NHGRI Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 521003 29307 003421_GCAT 270 366901 642979320 NZ_ABXH00000000, ABXH00000000 Draft Newbler post-1.1.03-Dev_01252007 37.2X GeneMark v3.3, Glimmer2 v2.13 94 1789 1841 62 454-FLX USA Human feces collected in Japan DSM 13280 Japan Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs None Host 37 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium ammoniagenes BACTERIAL Corynebacterium ammoniagenes DSM 20306 DSM 20306 DSM 20306, ATCC 6871, NCTC 2398, NCIB 8143 Yes Gi02697 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu http://genome.wustl.edu/info/contact_info.cgi Medical, Human Microbiome Project (HMP) 649754 38319 003425_GCAT 281 13458 0 In progress 0 0 0 USA Stool of infant DSM 20306 Stool of infant Homo sapiens Infant Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host Nonmotile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium accolens Unknown Gi02698 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 38284 003426_GCAT 278 13484 0 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host Nonmotile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium accolens BACTERIAL Corynebacterium accolens ATCC 49725 ATCC 49725 Corynebacterium accolens ATCC 49725 ATCC 49725 Yes Gi02699 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525260 31443 003427_GCAT 276 13484 643886058 NZ_ACGD00000000, ACGD00000000 Complete Newbler/1.1.03.24 25.01X 76 2413 2390 59 Illumina, 454-FLX USA Human sample from respiratory tract ATCC Homo sapiens Airways Respiratory tract Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host Nonmotile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium aurimucosum Unknown Gi02700 Genome incomplete Public NIH, HMP Human Microbiome Project (HMP), Medical 169292 003428_GCAT 285 57712 0 Targeted 0 0 0 USA Human skin sample Blaser Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Human skin, Host Nonmotile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium efficiens BACTERIAL Corynebacterium efficiens YS-314, DSM 44549 YS-314, DSM 44549 Corynebacterium efficiens YS-314 DSM 44549 CCUG 47130, DSM 44549, CCM 7123 Yes Gi02701 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 196164 34585 003429_GCAT 290 71077 0 NZ_ACLI00000000, ACLI00000000 Draft Newbler/2.0-011609 23.3X 175 3113 0 63 Sanger, 454 USA Soil; Japan, Kanagawa DSM Japan 35.5 139.5 Homo sapiens Skin Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host Nonmotile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium genitalium BACTERIAL Corynebacterium genitalium ATCC 33030 ATCC 33030 Corynebacterium genitalium ATCC 33030 NCTC 11859, ATCC 33030 Unknown Gi02702 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Human Microbiome Project (HMP), Medical 585529 34587 003430_GCAT 291 13451 0 NZ_ACLJ00000000, ACLJ00000000 Draft Newbler/2.0-011609 25X 99 2319 0 62 Sanger, 454-FLX USA ATCC Homo sapiens Urogenital tract Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host Nonmotile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium lipophiloflavum BACTERIAL Corynebacterium lipophiloflavum DSM 44291 DSM 44291 Corynebacterium lipophiloflavum DSM 44291 DSM 44291, DMMZ 1944, CCUG 37336 Yes Gi02705 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525263 31447 SRS001941 003433_GCAT 298 13442 643886002 ACHJ00000000, NZ_ACHJ00000000 Complete Newbler/1.1.03.24 32.77X 249 2293 2430 64.8 454-FLX, Illumina USA Patient with bacterial vaginosis DSM Patient with bacterial vaginosis Homo sapiens Female Patient with bacterial vaginosis Urogenital tract Vaginal Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host Nonmotile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium pseudogenitalium BACTERIAL Corynebacterium pseudogenitalium ATCC 33035 ATCC 33035 Corynebacterium pseudogenitalium ATCC 33035 ATCC 33035 Unknown Gi02707 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525264 30955 SRS000861 003435_GCAT 305 643886084 NZ_ABYQ00000000, ABYQ01000000 Draft Newbler/1.1.03.24 44.94X 317 2587 2663 59 454-FLX, Illumina USA Healthy human ATCC Healthy human Homo sapiens Healthy Urogenital tract Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host, Urogenital tract 37 Nonmotile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium glucuronolyticum BACTERIAL Corynebacterium glucuronolyticum ATCC 51866 ATCC 51866 Corynebacterium glucuronalyticum ATCC 51866 ATCC 51866 Unknown Gi02708 Genome incomplete Public BCM-HGSC Taxonomy, NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 548478 31549 SRP000460 003436_GCAT 293 73162 643886137 ACHF00000000, NZ_ACHF00000000 Complete Newbler/1.1.03.24 42.22X 182 2845 2790 58 USA Human urogenital sample ATCC Homo sapiens Urogenital tract Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host, Urogenital tract Nonmotile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium striatum BACTERIAL Corynebacterium striatum ATCC 6940 ATCC 6940 Corynebacterium striatum ATCC 6940 IFO 15291, NCTC 764, ATCC 6940 Yes Gi02710 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525268 31449 SRS001988 003438_GCAT 308 13471 643886057 NZ_ACGE00000000, ACGE00000000 Complete Newbler/2.0-011609 28.7X 194 2724 2730 59 Illumina, 454-FLX USA ATCC Homo sapiens Urogenital tract Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host Nonmotile Chemoorganotroph Bacteria Deinococcus-Thermus Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. JCVIHMP006 BACTERIAL Deinococcus sp. AE002076, JCVIHMP006 AE002076, JCVIHMP006 Deinococcus sp. JCVIHMP006 Unknown Gi02713 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 553167 31369 003441_GCAT 316 1424 0 In progress 0 0 0 USA Human skin sample Homo sapiens Skin Aerobe Coccus-shaped Mesophile Free living None Host, Human skin Nonmotile Radiation resistant Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp. 3_1_syn3 BACTERIAL Desulfovibrio sp. 3_1_syn3 3_1_syn3 BEI HM-66 Unknown Gi02717 Genome targeted Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 457398 003445_GCAT 326 10487 0 DNA Received 0 0 0 USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Host Motile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Dialister Dialister invisus BACTERIAL Dialister invisus DSM 15470 DSM 15470 Dialister invisus DSM 15470 DSM 15470 Yes Gi02718 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 592028 33143 003446_GCAT 327 HOMD: tax_118 85145 0 ACIM00000000, NZ_ACIM00000000 Draft 38.3x 48 1884 0 45.5 454 USA Infected dental root canal DSM Root canals Homo sapiens Patient with infected dental root canal Oral Teeth Anaerobe Rod-shaped Mesophile gram+ Free living Host, Oral microflora Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Dorea Dorea sp. 4_1_36FAA BACTERIAL Dorea sp. 4_1_36FAA 4_1_36FAA BEI HM-69 Unknown Gi02722 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 450747 39557 003450_GCAT 333 0 DNA Received 0 0 0 USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Edwardsiella Edwardsiella tarda BACTERIAL Edwardsiella tarda ATCC 23685 ATCC 23685 Edwardsiella tarda ATCC 23685 ATCC 23685 Unknown Gi02723 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://www.genome.wustl.edu/info/contact_info.cgi Animal Pathogen, Fish Pathogen, Medical, Human Microbiome Project (HMP), Human Pathogen, Human Gut Microbiome Initiative (HGMI) 500638 28661 SRP000374 003451_GCAT 334 0 In progress 0 0 0 USA Human feces ATCC 23685 Human feces Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Wound infection, Septicemia, Gastroenteritis Host, Human intestinal microflora Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Enterobacter Enterobacter cancerogenus BACTERIAL Enterobacter cancerogenus ATCC 35316 ATCC 35316 Enterobacter cancerogenus ATCC 35316 ATCC 35316 Unknown Gi02724 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://www.genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 500639 28663 SRP000375 003452_GCAT 882 642979368 NZ_ABWM00000000, ABWM00000000 Complete Newbler 29.7x GeneMark v3.3, Glimmer2 v2.13 83 4602 4672 55 454-FLX USA Human feces Human feces Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Mesophile gram- Free living Wound infection Host, Human intestinal microflora Motile Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis TUSoD Ef11, JCVIHMP039 TUSoD Ef11, JCVIHMP039 Enterococcus faecalis TUSoD Ef11 BEI HM-51 Unknown Gi02726 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ ENTFA Medical, Human Microbiome Project (HMP) 553209 31415 SRS001048 003454_GCAT 347 164080 0 NZ_ACOX00000000, ACOX00000000 Draft 306625 Newbler 1.1.03.24-64-7 27X 79 2800 2776 37 454 USA Human oral flora Stevens Human oral flora Homo sapiens Oral Facultative Coccus-shaped Mesophile gram+ Free living Opportunistic infection Human intestinal microflora, Host, Human oral microflora, Human vaginal microflora Nonmotile Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis ATCC 29200 ATCC 29200 Enterococcus faecalis ATCC 29200 ATCC 29200 Unknown Gi02727 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525271 31459 SRS001929 003455_GCAT 345 164080 643886004 ACHK00000000, NZ_ACHK00000000 Draft 459166 Newbler/1.1.03.24 40.45X 123 2936 3016 37 USA Urogenital secretions, Quebec, Canada ATCC Canada Homo sapiens Urogenital tract Urogenital secretions Aerobe Mesophile gram+ Free living Host Nonmotile Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis TX1332 TX1332 Enterococcus faecalis TX1332 BEI Contacted Unknown Gi02728 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525278 31461 SRS001972 003456_GCAT 349 164080 643886064 NZ_ACGM00000000, ACGM00000000 Draft 223139 Newbler/1.1.03.24 19.26X 116 2929 3065 37 Illumina, 454-FLX USA Homo sapiens Gastrointestinal tract Aerobe Mesophile gram+ Free living Host Nonmotile Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium BACTERIAL Enterococcus faecium DO DO Enterococcus faecium DO BEI Contacted Unknown Gi02729 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 333849 30627 SRS000269 003457_GCAT 351 HOMD: tax_801 137527 0 NZ_ACIY00000000, ACIY00000000 Draft Newbler/1.1.03.24 14X 623 2830 0 37 Illumina, 454-FLX USA Blood - human (blood of patient with infective endocarditis in Houston Texas, United States ATCC July 1992 USA Houston Texas, United States 29.710489 -95.39907 Homo sapiens Blood Aerobe Mesophile gram+ Free living Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium BACTERIAL Enterococcus faecium TX1330 TX1330 Enterococcus faecium TX1330 BEI Contacted Unknown Gi02730 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525279 31463 003458_GCAT 352 15290 643886120 NZ_ACHL00000000, ACHL00000000 Complete 639332 Newbler/1.1.03.24 60.08X 168 2721 2841 38 454 USA Homo sapiens Gastrointestinal tract Facultative Mesophile gram+ Free living Host Nonmotile Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae Erysipelothrix Erysipelothrix rhusiopathiae BACTERIAL Erysipelothrix rhusiopathiae ATCC 19414 ATCC 19414 Erysipelothrix rhusiopathiae ATCC 19414 ATCC 19414 Yes Gi02731 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525280 31465 003459_GCAT 357 78125 0 ACLK00000000, NZ_ACLK00000000 Draft 531608 Newbler/2.0-011609 3408X 54 1719 0 36 454-FLX, Sanger USA ATCC Homo sapiens Skin Aerobe Rod-shaped Mesophile gram+ Free living Host Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia sp. 1_1_43 BACTERIAL Escherichia sp. 1_1_43 1_1_43 Escherichia sp. 1_1_43 BEI HM-37 Unknown Gi02732 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 457400 32463 003460_GCAT 362 9684 0 NZ_ACID00000000, ACID00000000 Complete 31.64x 91 2186 2295 50 454 USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Host Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia sp. 3_2_53FAA BACTERIAL Escherichia sp. 3_2_53FAA 3_2_53FAA Escherichia sp. 3_2_53FAA BEI HM-38 Unknown Gi02733 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 469598 32465 003461_GCAT 363 9684 0 ACAC00000000, NZ_ACAC00000000 Complete 173 5094 5422 50 USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Host Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia sp. 4_1_40B BACTERIAL Escherichia sp. 4_1_40B 4_1_40B Escherichia sp. 4_1_40B BEI HM-39 Unknown Gi02734 Genome incomplete Public Broad Institute Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 457401 32467 003462_GCAT 364 9684 0 ACDM00000000, NZ_ACDM00000000 Draft 34.25 126 4856 4628 50.5 454 USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Host Motile Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae Eubacterium biforme BACTERIAL Eubacterium biforme VPI C17-5, DSM 3989 VPI C17-5, DSM 3989 Eubacterium biforme DSM 3989 ATCC 27806, DSM 3989 Yes Gi02736 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 518637 29269 003464_GCAT 366 642979360 NZ_ABYT00000000, ABYT00000000 Complete 320803 Newbler 2.0.00.20 31.7X GeneMark v3.3, Glimmer2 v2.13 161 2415 2578 33 454-FLX USA Human feces DSM 3989 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living None Human intestinal microflora, Host 37 Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae Eubacterium cylindroides BACTERIAL Eubacterium cylindroides VPI 3654, DSM 3983 VPI 3654, DSM 3983 Eubacterium cylindroides DSM 3983 DSM 3983, JCM 10261, ATCC 27803 Yes Gi02737 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu http://genome.wustl.edu/info/contact_info.cgi Medical, Human Microbiome Project (HMP) 649755 38321 003465_GCAT 367 42372 0 In progress 0 0 0 USA Human feces DSM 3983 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Mesophile gram+ Free living Host 37 Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium Eubacterium hadrum BACTERIAL Eubacterium hadrum VPI 82-52, DSM 3319 VPI 82-52, DSM 3319 DSM 3319, ATCC 29173 Yes Gi02738 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 649757 38323 003466_GCAT 369 0 In progress 0 0 0 USA Human feces DSM 3319 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Mesophile gram+ Free living Host Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium BACTERIAL Eubacterium ramulus DSM 3995 DSM 3995 DSM 3995, ATCC 29099 Yes Gi02740 Genome targeted Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu http://genome.wustl.edu/info/contact_info.cgi Medical, Human Microbiome Project (HMP) 39490 003468_GCAT 373 69909 0 0 0 0 USA Human feces Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Mesophile gram+ Free living Host Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Mobiluncus BACTERIAL Mobiluncus curtisii ATCC 51333 ATCC 51333 ATCC 51333 Unknown Gi02744 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 2051 003472_GCAT 388 95111 0 0 0 0 USA vaginal secretions, Sweden ATCC Sweden Human vaginal sample, Sweden Homo sapiens Female Urogenital tract Vaginal secretions Vaginal Anaerobe Rod-shaped Mesophile gram- Free living Host, Vagina microflora Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Finegoldia Finegoldia magna BACTERIAL Finegoldia magna ATCC 53516 ATCC 53516 Finegoldia magna ATCC 53516 ATCC 53516 Unknown Gi02745 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 525282 31469 SRS001997 003473_GCAT 391 HOMD: tax_662 81585 643886012 NZ_ACHM00000000, ACHM00000000 Draft 511210 Newbler/1.1.03.24 54.11X 234 1884 1956 32.8 Illumina, 454-FLX USA Human vaginal sample ATCC Human vaginal sample Homo sapiens Female Urogenital tract Vaginal vaginal discharge Anaerobe Mesophile gram- Free living Host Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium gonidiaformans BACTERIAL Fusobacterium gonidiaformans ATCC 25563 ATCC 25563 Fusobacterium gonidiaformans ATCC 25563 ATCC 25563 Yes Gi02748 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 469615 32419 003476_GCAT 394 0 NZ_ACET00000000, ACET00000000 Draft 35.82x 3400 0 32.5 454 USA Human gastrointestinal tract Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Chemoorganotroph Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium mortiferum BACTERIAL Fusobacterium mortiferum ATCC 9817 ATCC 9817 Fusobacterium mortiferum ATCC 9817 ATCC 9817 No Gi02749 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 469616 32421 003477_GCAT 395 202545 0 ACDB00000000, NZ_ACDB00000000 Complete 34.05x 2635 2602 29.1 454 USA Human gastrointestinal tract Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Chemoorganotroph Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. 1_1_41FAA BACTERIAL Fusobacterium sp. 1_1_41FAA 1_1_41FAA Fusobacterium sp. 1_1_41FAA BEI HM-54 Unknown Gi02750 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 469621 32469 003478_GCAT 400 0 In progress 0 0 0 USA Human gastrointestinal tract Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Chemoorganotroph Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. 11_3_2 BACTERIAL Fusobacterium sp. 11_3_2 11_3_2 BEI HM-56 Unknown Gi02751 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 457403 39559 003479_GCAT 401 0 DNA Received 0 0 0 USA Human gastrointestinal tract Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Chemoorganotroph Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. 12_1B BACTERIAL Fusobacterium sp. 12_1B 12_1B Fusobacterium sp. 12_1B BEI HM-57 Unknown Gi02752 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 457404 32471 003480_GCAT 402 0 In progress 0 0 0 USA Human gastrointestinal tract Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Chemoorganotroph Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. 2_1_31 BACTERIAL Fusobacterium sp. 2_1_31 2_1_31 Fusobacterium sp. 2_1_31 BEI HM-42 Unknown Gi02753 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 469599 32473 003481_GCAT 403 0 ACDC00000000, NZ_ACDC00000000 Complete 24.30x 2407 2338 26 454 USA Human gastrointestinal tract Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Chemoorganotroph Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. 21_1A BACTERIAL Fusobacterium sp. 21_1A 21_1A Fusobacterium sp. 21_1A BEI HM-43 Unknown Gi02755 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 469601 32475 003483_GCAT 404 0 In progress 0 0 0 USA Human gastrointestinal tract Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Chemoorganotroph Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. BACTERIAL Fusobacterium sp. 3_1_27 3_1_27 BEI HM-61 Unknown Gi02756 Genome targeted Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 68766 003484_GCAT 405 0 DNA Received 0 0 0 USA Human gastrointestinal tract Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Chemoorganotroph Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. 3_1_33 BACTERIAL Fusobacterium sp. 3_1_33 3_1_33 BEI HM-62 Unknown Gi02757 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 469603 38519 003485_GCAT 406 0 In progress 0 0 0 USA Human gastrointestinal tract Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Chemoorganotroph Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. BACTERIAL Fusobacterium sp. 3_1_36A2 3_1_36A2 BEI Shipping Unknown Gi02758 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 68766 38357 003486_GCAT 946 0 NZ_ACPU00000000, ACPU00000000 Draft 18.25x GeneMark, Glimmer, Metagene 51 2236 0 26 454 USA Homo sapiens Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Chemoorganotroph Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. 3_1_5R BACTERIAL Fusobacterium sp. 3_1_5R 3_1_5R Fusobacterium sp. 3_1_5R BEI HM-65 Unknown Gi02759 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 469605 32477 003487_GCAT 407 0 NZ_ACDD00000000, ACDD00000000 Draft 37.33x 99 1848 0 32 454 USA Human gastrointestinal tract Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Chemoorganotroph Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. 4_1_13 BACTERIAL Fusobacterium sp. 4_1_13 4_1_13 Fusobacterium sp. 4_1_13 BEI HM-68 Unknown Gi02760 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 469606 32479 003488_GCAT 408 0 ACDE00000000, NZ_ACDE00000000 Complete 40.79x 50 2247 2197 26 454 USA Human gastrointestinal tract Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Chemoorganotroph Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. 4_8 BACTERIAL Fusobacterium sp. 4_8 4_8 Fusobacterium sp. 4_8 BEI HM-70 Unknown Gi02761 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 469607 32481 003489_GCAT 409 0 In progress 0 0 0 USA Human gastrointestinal tract Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Chemoorganotroph Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. 7_1 BACTERIAL Fusobacterium sp. 7_1 7_1 Fusobacterium sp. 7_1 BEI HM-73 Unknown Gi02762 Genome incomplete Public Broad Institute Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 457405 32483 003490_GCAT 410 0 ACDF00000000, NZ_ACDF00000000 Complete 29.05x 95 2470 2460 26 454 USA Human gastrointestinal tract Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Chemoorganotroph Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium ulcerans BACTERIAL Fusobacterium ulcerans ATCC 49185 ATCC 49185 Fusobacterium ulcerans ATCC 49185 NCTC 12111, ATCC 49185 Yes Gi02763 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 469617 32487 003491_GCAT 416 11327 0 NZ_ACDH00000000, ACDH00000000 Draft 33.83x 123 3500 0 30 454 USA Human gastrointestinal tract Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Chemoorganotroph Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium varium BACTERIAL Fusobacterium varium ATCC 27725 ATCC 27725 Fusobacterium varium ATCC 27725 ATCC 27725 No Gi02764 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 469618 32423 003492_GCAT 417 200718 0 ACIE00000000, NZ_ACIE00000000 Complete 24.24x 100 3267 3063 29 454 USA Human gastrointestinal tract Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Gordoniaceae Gordonia BACTERIAL Gordonia sputi Unknown Gi02766 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 36823 003494_GCAT 442 13319 0 Targeted 0 0 0 USA Human skin Blaser Homo sapiens Skin Aerobe Rod-shaped Mesophile gram+ Free living Filaments Human skin, Host Nonmotile Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter canadensis BACTERIAL Helicobacter canadensis MIT 98-5491 MIT 98-5491 Helicobacter canadensis MIT 98-5491 ATCC 700968, LCDC 16143 Yes Gi02771 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 537970 30071 003499_GCAT 456 643886213 ABQS00000000, NZ_ABQS00000000 Complete 49x 126 1605 1713 33 USA Human with diarrhea David Schauer, MIT, Boston 1994-1999 Canada Human with diarrhea Homo sapiens Patient with diarrhea Gastrointestinal tract Feces Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastroenteritis Host Motile Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter cinaedi BACTERIAL Helicobacter cinaedi CCUG 18818 CCUG 18818 Helicobacter cinaedi CCUG 18818 CCUG 18818, NCTC 12423 Unknown Gi02773 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Pathogen, Human Microbiome Project (HMP) 537971 30073 003501_GCAT 457 17350 643886141 NZ_ABQT00000000, ABQT00000000 Complete 39x 96 2182 2424 38 USA gastrointestinal tract of mammals David Schauer, MIT, Boston Homo sapiens Gastrointestinal tract Feces Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Arthritis, Cellulitis, Bacteremia Host Motile Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pullorum BACTERIAL Helicobacter pullorum MIT 98-5489 MIT 98-5489 Helicobacter pullorum MIT 98-5489 LCDC 15115, BEI HM-124, MIT 98-5489 Unknown Gi02775 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Human Microbiome Project (HMP), Medical 537972 30075 003503_GCAT 460 643886218 NZ_ABQU00000000, ABQU00000000 Complete 60x 131 1919 2113 34 USA David Schauer, MIT, Boston Homo sapiens Gastrointestinal tract Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastroenteritis Host Motile Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter bilis BACTERIAL Helicobacter bilis ATCC 43879 ATCC 43879 Helicobacter bilis ATCC 43879 ATCC 43879, CCUG 23435 No Gi02778 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 613026 32489 003506_GCAT 469 39557 0 ACDN00000000, NZ_ACDN00000000 Complete 18.54x 226 2482 2300 34 454 USA Feces of 16-year-old human female, Madison, WI David Schauer, MIT, Boston USA Feces of 16-year-old human female, Madison, WI 43.062071 -89.400846 Homo sapiens Female 16 years old Gastrointestinal tract Feces Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Host Motile Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter winghamensis BACTERIAL Helicobacter winghamensis ATCC BAA-430 ATCC BAA-430 Helicobacter winghamensis ATCC BAA-430 ATCC BAA-430 Unknown Gi02779 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Human Microbiome Project (HMP), Medical 556267 32491 003507_GCAT 470 0 NZ_ACDO00000000, ACDO00000000 Complete Newbler 61.43x 55 1654 1674 35 454 USA Human stool; male, 2 yrs David Schauer, MIT, Boston 1997 11427547 Patients with gastroenteritis Homo sapiens Male 2 years old Patient with gastroenteritis Gastrointestinal tract Feces Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Host Motile Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae Holdemania Holdemania filiformis BACTERIAL Holdemania filiformis VPI J1-31B-1, DSM 12042 VPI J1-31B-1, DSM 12042 Holdemania filiformis DSM 12042 ATCC 51649, DSM 12042 Yes Gi02780 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu http://genome.wustl.edu/info/contact_info.cgi HOLDEFILI Human Microbiome Project (HMP), Medical 545696 30361 003508_GCAT 471 643886103 NZ_ACCF00000000, ACCF00000000 Draft Newbler 2.0.00.20 18.2X GeneMark v3.3, Glimmer2 v2.13 289 3804 4275 50 454-FLX USA Human feces from Virginia DSM 12042 USA Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Intrasporangiaceae Janibacter BACTERIAL Janibacter melonis Unknown Gi02782 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 262209 003510_GCAT 473 177449 0 Targeted 0 0 0 USA Human skin Blaser 15545420 Homo sapiens Skin Mesophile gram+ Free living None Host, Human skin Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Klebsiella Klebsiella sp. 1_1_55 BACTERIAL Klebsiella sp. 1_1_55 1_1_55 BEI HM-44 Unknown Gi02784 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html ACXA Medical, Human Microbiome Project (HMP) 469608 40049 003512_GCAT 485 10161 0 DNA Received 0 0 0 USA Human gastrointestinal tract Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Facultative Rod-shaped Mesophile gram- Free living Human intestinal microflora, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micrococcaceae Kocuria BACTERIAL Kocuria marina Unknown Gi02785 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 223184 003513_GCAT 487 271644 0 Targeted 0 0 0 USA Human skin Blaser 15388718 Homo sapiens Skin Aerobe Coccus-shaped Mesophile gram+ Free living Singles, Tetrads None Host, Human skin Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus brevis DSM 20054 DSM 20054 NCDO 1749, ATCC 14869, DSM 20054 Yes Gi02786 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Microbiome Project (HMP), Medical 1580 38325 003514_GCAT 495 115296 0 In progress 0 0 0 USA Human feces DSM 20054 Human feces Homo sapiens Gastrointestinal tract Feces Aerobe Rod-shaped Mesophile gram+ Free living Chains None Host 30 Motile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus acidophilus BACTERIAL Lactobacillus acidophilus ATCC 4796 ATCC 4796 Lactobacillus acidophilus ATCC 4796 ATCC 4796 Unknown Gi02787 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525306 31477 SRS001936 003515_GCAT 492 103954 643886014 NZ_ACHN00000000, ACHN00000000 Complete Newbler/1.1.03.24 19.76X 69 1999 2084 34 Illumina, 454-FLX USA ATCC Homo sapiens Gastrointestinal tract Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Host Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus amylolyticus BACTERIAL Lactobacillus amylolyticus DSM 11664 DSM 11664 Lactobacillus amylolyticus DSM 11664 DSM 11664 Yes Gi02788 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 585524 34615 003516_GCAT 493 15125 0 In progress 0 0 0 USA DSM 9779604 Homo sapiens Gastrointestinal tract Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Host Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus antri BACTERIAL Lactobacillus antri DSM 16041 DSM 16041 Lactobacillus antri DSM 16041 LMG 22111, DSM 16041, CCUG 48456 Yes Gi02789 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Human Microbiome Project (HMP), Medical 525309 31479 SRS001942 003517_GCAT 494 85511 0 ACLL00000000, NZ_ACLL00000000 Draft Newbler/1.1.03.24 30.56X 76 2242 0 51 454-FLX, Sanger USA Gastric biopsies, human stomach mucosa; Sweden, Kalix DSM Sweden Gastric biopsies, human stomach mucosa; Sweden, Kalix 65.852983 23.155277 Homo sapiens Gastrointestinal tract Stomach Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Host Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus coleohominis BACTERIAL Lactobacillus coleohominis 101-4-CHN 101-4-CHN Unknown Gi02790 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Human Microbiome Project (HMP), Medical 575594 37949 003518_GCAT 501 23477 0 ACOH00000000, NZ_ACOH00000000 Draft 28.32x GeneMark, Glimmer, Metagene 35 1704 0 41 454 USA Human vaginal isolate Qiang Xu, Osel Inc. Human vaginal isolate Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Host, Human vaginal microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus BACTERIAL Lactobacillus crispatus JV V01 JV V01 Lactobacillus crispatus JV-V101 BEI HM-103 Unknown Gi02792 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Human Microbiome Project (HMP), Medical 491076 30641 SRS000258 003520_GCAT 506 HOMD: tax_817 643886212 ACKR00000000, NZ_ACKR00000000 Complete Newbler/1.1.03.24 46.54X 234 2066 2278 36 Sanger, 454 USA Human vaginal normal flora Homo sapiens Female Urogenital tract Vaginal Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus gasseri BACTERIAL Lactobacillus gasseri JV-V03 JV-V03 Lactobacillus gasseri JV-V03 BEI HM-104 Unknown Gi02794 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Human Microbiome Project (HMP), Medical 525326 31487 003522_GCAT 514 35597 643886066 NZ_ACGO00000000, ACGO00000000 Draft Newbler/1.1.03.24 71X 40 2005 2060 34 Illumina, 454-FLX USA Human vaginal normal flora Homo sapiens Female Urogenital tract Vaginal Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus helveticus BACTERIAL Lactobacillus helveticus DSM 20075 DSM 20075 Lactobacillus helveticus DSM 20075 DSM 20075, ATCC 15009 Yes Gi02795 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Human Microbiome Project (HMP), Medical 585520 34619 003523_GCAT 518 139964 0 NZ_ACLM00000000, ACLM00000000 Draft Newbler/2.0-011609 34.5X 235 1808 0 36 454-FLX, Sanger USA Emmental cheese DSM Homo sapiens Gastrointestinal tract Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Host, Human intestinal microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus iners BACTERIAL Lactobacillus iners DSM 13335 DSM 13335 Lactobacillus iners DSM 13335 LMG 18914, CCUG 28746, CIP 105923, DSM 13335 Yes Gi02796 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Human Microbiome Project (HMP), Medical 525328 31491 003524_GCAT 520 101176 0 ACLN00000000, NZ_ACLN00000000 Draft Newbler/2.0-011609 52.6X 22 1269 0 32 454, Sanger USA Human urine; Sweden DSM Sweden 10028266 Homo sapiens Urogenital tract Urine Urinary tract Facultative Rod-shaped Mesophile gram+ Free living Chains None Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus jensenii BACTERIAL Lactobacillus jensenii JV-V16 JV-V16 Lactobacillus jensenii JV-V16 BEI HM-105 Unknown Gi02797 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Human Microbiome Project (HMP), Medical 525329 31493 SRS001976 003525_GCAT 526 HOMD: tax_839 47914 643886043 ACGQ00000000, NZ_ACGQ00000000 Draft Newbler/1.1.03.24 49.28X 52 1564 1534 0 Illumina, 454-FLX USA Homo sapiens Urogenital tract Vaginal Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus johnsonii BACTERIAL Lactobacillus johnsonii ATCC 33200 ATCC 33200 Lactobacillus johnsonii ATCC 33200 ATCC 33200, DSM 10533 Yes Gi02798 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Human Microbiome Project (HMP), Medical 525330 31495 SRS001937 003526_GCAT 528 279318 643886046 ACGR00000000, NZ_ACGR00000000 Draft Newbler/1.1.03.24 90.89X 73 1772 1896 34.5 454-FLX, Illumina USA Human blood ATCC 33200 Belgium Homo sapiens Blood Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus paracasei BACTERIAL Lactobacillus paracasei 8700:02 8700:02 Lactobacillus paracasei subsp. paracasei 8700:2 Unknown Gi02799 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Human Microbiome Project (HMP), Medical 537973 30077 003527_GCAT 529 643886139 NZ_ABQV00000000, ABQV00000000 Complete 36x 90 2978 3002 46 USA normal human gut flora Delphine Saulnier Homo sapiens Gastrointestinal tract Gut Microaerophilic Rod-shaped Nonsporulating Mesophile gram+ Free living Chains None Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus reuteri BACTERIAL Lactobacillus reuteri CF48-3A CF48-3A Lactobacillus reuteri CF48-3A BEI HM-102 Unknown Gi02800 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Human Microbiome Project (HMP), Medical 525341 31553 SRS001977 003528_GCAT 534 269185 643886138 ACHG00000000, NZ_ACHG00000000 Complete Newbler/1.1.02.12 60.63X 287 2032 2223 38 454-FLX, Illumina USA Homo sapiens Gastrointestinal tract Feces Microaerophilic Rod-shaped Mesophile gram+ Free living None Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus rhamnosus BACTERIAL Lactobacillus rhamnosus LMS2-1 LMS2-1 Lactobacillus rhamnosus LMS2-1 BEI HM-106 Unknown Gi02801 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Human Microbiome Project (HMP), Medical 525361 31497 SRS001944 003529_GCAT 539 107861 643886127 NZ_ACIZ00000000, ACIZ00000000 Complete Newbler/1.1.03.24 38.03X 162 3109 3209 46 Illumina, 454 USA Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Mesophile gram+ Free living None Host Nonmotile Probiotic Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus ultunensis BACTERIAL Lactobacillus ultunensis DSM 16047 DSM 16047 Lactobacillus ultunensis DSM 16047 DSM 16047, LMG 22117, CIP 109908, CCUG 48460 Yes Gi02804 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Human Microbiome Project (HMP), Medical 525365 31505 SRS001949 003532_GCAT 548 84798 643886047 ACGU00000000, NZ_ACGU00000000 Complete Newbler/1.1.03.24 33.14X 101 2168 2271 35 Illumina, 454-FLX USA Gastric biopsies, human stomach mucosa; Sweden DSM Sweden Homo sapiens Gastrointestinal tract Stomach Gastric biopsies Microaerophilic Rod-shaped Mesophile gram+ Free living None Host Nonmotile Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Sneathia Leptotrichia amnionii BACTERIAL Leptotrichia amnionii JCVIHMP001, DSM 16631 JCVIHMP001, DSM 16631 Leptotrichia amnionii JCVIHMP001 DSM 16631 No Gi02806 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Human Microbiome Project (HMP), Medical 553161 31361 003534_GCAT 552 212738 0 In progress 0 0 0 USA Human blood, from Strasbourg, France Wilson/White France Strasbourg, France 48.582933 7.743749 Homo sapiens Female Blood Anaerobe Rod-shaped Mesophile gram- Free living Chains, Filaments Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Leuconostocaceae Leuconostoc Leuconostoc mesenteroides BACTERIAL Leuconostoc mesenteroides cremoris ATCC 19254 ATCC 19254 Leuconostoc mesenteroides subsp. cremoris ATCC 19254 NCDO 543, ATCC 19254 Yes Gi02808 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 586220 34629 003536_GCAT 555 45789 643886109 ACKV00000000, NZ_ACKV00000000 Complete Newbler/2.0-011609 31.9X 126 1638 1903 37 454-FLX, Sanger USA Hansen's dried starter powder ATCC Homo sapiens Gastrointestinal tract Aerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living None Host Nonmotile Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria grayi BACTERIAL Listeria grayi DSM 20601 DSM 20601 Listeria grayi DSM 20601 DSM 20601, ATCC 19120 Yes Gi02809 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525367 31517 SRS001904 003537_GCAT 556 15041 643886115 ACCR00000000, NZ_ACCR00000000 Draft Newbler/1.1.03.24 23.46X 67 2571 2686 41 454-FLX, Illumina USA faeces of chinchilla DSM Homo sapiens Gastrointestinal tract Feces Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Chains, Singles Host Motile Chemoorganotroph Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii ARCHAEAL Methanobrevibacter smithii B181, DSM 11975 B181, DSM 11975 Methanobrevibacter smithii DSM 11975 DSM 11975 No Gi02812 Genome incomplete Public Washington Univ NIH-NHGRI Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Human Microbiome Project (HMP), Medical 521001 29301 003540_GCAT 564 98608 0 In progress 0 0 0 USA Human feces DSM 11975 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Mesophile gram- Free living Chains, Pairs None Host 37 - 40 Nonmotile Methanogen Lithotroph Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii ARCHAEAL Methanobrevibacter smithii F1, DSM 2374 F1, DSM 2374 Methanobrevibacter smithii DSM 2374 DSM 2374 No Gi02814 Genome incomplete Public Washington Univ NIH-NHGRI Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Medical, Human Microbiome Project (HMP), Human Gut Microbiome Initiative (HGMI) 521002 29303 003542_GCAT 565 643886215 NZ_ABYV00000000, ABYV00000000 Complete Newbler 2.0.00.20 47X GeneMark v3.3, Glimmer2 v2.13 20 1707 2746 31 454-FLX USA Human feces DSM 2374 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Mesophile gram+ Free living Chains, Pairs None Human intestinal microflora, Host 37 - 40 Nonmotile Methanogen Lithotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micrococcaceae Micrococcus Micrococcus luteus BACTERIAL Micrococcus luteus SK58 SK58 Micrococcus luteus SK58 BEI HM-114 Unknown Gi02817 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Human Microbiome Project (HMP), Medical 596312 34071 003545_GCAT 569 110845 0 In progress 0 0 0 USA Human skin Blaser Homo sapiens Skin Left arm Aerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Tetrads Host Nonmotile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Mitsuokella Mitsuokella multacida BACTERIAL Mitsuokella multacida A 405-1, DSM 20544 A 405-1, DSM 20544 Mitsuokella multacida DSM 20544 NCTC 10934, ATCC 27723, DSM 20544 Yes Gi02819 Genome incomplete Public Washington Univ NIH Weinstock G gweinsto@watson.wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Human Microbiome Project (HMP), Medical 500635 28653 SRP000378 003547_GCAT 572 642979367 NZ_ABWK00000000, ABWK00000000 Complete Newbler 2.0.0-PreRelease-04/10/2008 45.9X GeneMark v3.3, Glimmer2 v2.13 457 2574 2749 58 454-FLX USA Human feces DSM 20544 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host, Human intestinal microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Mobiluncus Mobiluncus curtisii BACTERIAL Mobiluncus curtisii ATCC 43063 ATCC 43063 Mobiluncus curtisii ATCC 43063 ATCC 43063, DSM 2711 No Gi02820 Genome incomplete Public BCM-HGSC BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 548479 31519 SRS001984 003548_GCAT 573 95111 643886114 NZ_ACCQ00000000, ACCQ00000000 Draft Newbler/1.1.03.24 56.9X 216 2172 2097 55 Illumina, 454-FLX USA vaginal secretions, France ATCC France Homo sapiens Female Urogenital tract Vaginal secretions Vaginal Anaerobe Rod-shaped Mesophile gram+ Free living Host Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Mobiluncus Mobiluncus mulieris BACTERIAL Mobiluncus mulieris ATCC 35243 ATCC 35243 Mobiluncus mulieris ATCC 35243 ATCC 35243 Yes Gi02821 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 585199 34633 003549_GCAT 577 94392 643886108 ACKW00000000, NZ_ACKW00000000 Complete Newbler/2.0-011609 24.9X 65 2398 2351 55 Sanger, 454-FLX USA Human vagina ATCC Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Mesophile gram+ Free living Host Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Moraxella BACTERIAL Moraxella osloensis 4 4 Unknown Gi02823 Genome targeted Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 34062 003551_GCAT 951 106550 0 Awaiting DNA 0 0 0 USA Aerobe Coccus-shaped Mesophile gram- Free living Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium parascrofulaceum BACTERIAL Mycobacterium parascrofulaceum ATCC BAA-614 ATCC BAA-614 Mycobacterium parascrofulaceum ATCC BAA-614 ATCC BAA-614 Yes Gi02825 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525368 31521 003553_GCAT 591 91680 0 In progress 0 0 0 USA Clinical specimen - human cervix biopsy from a 21 year old female diagnosed with cervical intraepithelial neoplasia in Manitoba, Canada ATCC Canada 15388708 Manitoba, Canada Homo sapiens Female 21 years old Patient with cervical intraepithelial neoplasia Urogenital tract Vaginal Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host Nonmotile Chemoorganotroph Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma BACTERIAL Mycoplasma fermentans Edward ATCC 15474 ATCC 15474 ATCC 15474 Unknown Gi02826 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 2115 003554_GCAT 592 15950 0 0 0 0 USA human phagedenic ulcer ATCC Homo sapiens Oral Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Host Nonmotile Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma BACTERIAL Mycoplasma hominis ATCC 23114 ATCC 23114 ATCC 23114 Yes Gi02827 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 2098 003555_GCAT 593 15892 0 0 0 0 USA Human rectal swab ATCC Homo sapiens Gastrointestinal tract Rectal swab Rectal Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Host Nonmotile Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma BACTERIAL Mycoplasma hominis ATCC 14207 ATCC 14207 ATCC 14207 No Gi02828 Genome incomplete Public NIH Medical, Human Microbiome Project (HMP) 2098 003556_GCAT 594 15892 0 0 0 0 USA Human feces, Spokane, WA USA Spokane, WA 47.653544 -117.411263 Homo sapiens Gastrointestinal tract Feces Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Host Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria sp. BACTERIAL Neisseria sp. DQ409137 DQ409137 Unknown Gi02831 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 192066 003559_GCAT 897 0 Targeted 0 0 0 USA Homo sapiens Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus acidilactici BACTERIAL Pediococcus acidilactici DSM 20284 DSM 20284 DSM 20284 Yes Gi02835 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 563194 SRS002792 003563_GCAT 623 0 0 0 0 USA DSMZ Homo sapiens Gastrointestinal tract Aerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Host Nonmotile Bacteria Firmicutes Clostridia Clostridiales Peptostreptococcaceae Peptostreptococcus Peptostreptococcus anaerobius BACTERIAL Peptostreptococcus anaerobius 653-L 653-L Peptostreptococcus anaerobius 653-L BEI HM-135 Unknown Gi02837 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 596329 34105 003565_GCAT 631 89770 0 In progress 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Coccus-shaped Mesophile gram+ Free living Host Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae BACTERIAL Porphyromonas sp. L16493 L16493 Unknown Gi02839 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 836 003567_GCAT 638 0 Targeted 0 0 0 USA Human skin Blaser Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. BACTERIAL Prevotella sp. AY207061 AY207061 Unknown Gi02840 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 59823 003568_GCAT 643 2085 0 Targeted 0 0 0 USA Human skin Blaser Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella bergensis BACTERIAL Prevotella bergensis DSM 17361 DSM 17361 Prevotella bergensis DSM 17361 DSM 17361, CCUG 51224 Yes Gi02841 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 585502 34637 003569_GCAT 645 93053 0 ACKS00000000, NZ_ACKS00000000 Draft Newbler/2.0-011609 21X 112 3203 0 47 Sanger, 454-FLX USA Human skin, soft tissue abscess DSM Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Propionibacterium Propionibacterium acnes BACTERIAL Propionibacterium acnes SK137 SK137 Propionibacterium acnes SK137 BEI HM-122 Unknown Gi02842 Genome incomplete Public J. Craig Venter Institute JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 553199 31005 SRS001046 003570_GCAT 675 368907 642979304 ABZW01000000, NZ_ABZW00000000 Draft Newbler 1.1.03.24-64-7 25X 16 2476 2500 60 USA Human skin Blaser Human skin Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Acne Human skin, Host Nonmotile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Proteus Proteus mirabilis BACTERIAL Proteus mirabilis ATCC 29906 ATCC 29906 Proteus mirabilis ATCC 29906 CDC PR 14, ATCC 29906 Yes Gi02844 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525369 31523 SRS001951 003572_GCAT 693 176061 643886024 ACLE00000000, NZ_ACLE00000000 Complete Newbler/1.1.03.24 28.8X 115 3795 3902 38 Illumina, Sanger, 454-FLX USA ATCC Homo sapiens Urogenital tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Host Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Providencia Providencia rustigianii BACTERIAL Providencia rustigianii DSM 4541 DSM 4541 Providencia rustigianii DSM 4541 ATCC 33673, DSM 4541 Yes Gi02845 Genome incomplete Public Washington Univ NIH Weinstock G gweinsto@watson.wustl.edu http://www.genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 500637 28651 003573_GCAT 701 642979318 NZ_ABXV00000000, ABXV00000000 Draft Newbler 2.0.00.20 19.8X GeneMark v3.3, Glimmer2 v2.13 127 3896 3943 41 454-FLX USA Human feces DSM 4541 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host, Human intestinal microflora Motile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae 70585 70585 Streptococcus pneumoniae 70585 Gc00969 Gi02846 Genome Complete and Published Public J. Craig Venter Institute JCVI http://www.jcvi.org/cms/contact/locations/ SP70585 2009-03-27 Unpublished Medical, Human Pathogen 488221 28043 003574_GCAT 70585 643692040 NC_012468 Complete 2184 2202 1 0 39 USA Homo sapiens Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram- Free living Chains, Pairs Pneumonia Host, Human nasopharyngeal microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae JJA JJA Streptococcus pneumoniae JJA Gc00973 Gi02847 Genome Complete and Published Public J. Craig Venter Institute JCVI http://www.jcvi.org/cms/contact/locations/ SPJ 2009-03-27 Unpublished Medical, Human Pathogen 488222 28039 003575_GCAT 643692041 NC_012466 Complete Level 6: Finished 2120 2235 1 0 39 USA Homo sapiens Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Host, Human nasopharyngeal microflora Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae Taiwan19F-14 Taiwan19F-14 Streptococcus pneumoniae Taiwan19F-14 ATCC 700905 No Gc00974 Gi02848 Genome Complete and Published Public J. Craig Venter Institute JCVI http://www.jcvi.org/cms/contact/locations/ SPT 2009-03-27 Unpublished Medical, Human Pathogen 487213 28037 003576_GCAT 643692043 NC_012469 Complete Level 6: Finished 2112 2205 1 0 39 Sanger USA cerebrospinal fluid, Taiwan 1997 Taiwan Homo sapiens Brain Cerebro-spinal fluid Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Host, Human nasopharyngeal microflora Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Nocardiaceae Rhodococcus BACTERIAL Rhodococcus corynebacterioides Unknown Gi02850 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 53972 003578_GCAT 723 141625 0 Targeted 0 0 0 USA Human skin Blaser Homo sapiens Skin Aerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Filaments Host, Human skin Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Nocardiaceae Rhodococcus Rhodococcus equi BACTERIAL Rhodococcus equi ATCC 33707 ATCC 33707 Rhodococcus equi ATCC 33707 ATCC 33707, CDC B1480 Unknown Gi02851 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525370 31525 SRS001952 003579_GCAT 724 13589 0 In progress 229611 Newbler/2.0-01162009 11X 1096 4651 0 0 454-FLX USA Human abscess ATCC Homo sapiens Skin Aerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Filaments Host Nonmotile Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Roseburia Roseburia intestinalis BACTERIAL Roseburia intestinalis L1-82, DSM 14610 L1-82, DSM 14610 Roseburia intestinalis L1-82 DSM 14610, NCIMB 13810 Yes Gi02852 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 536231 30005 003580_GCAT 728 642979356 NZ_ABYJ00000000, ABYJ00000000 Complete 274803 Newbler 2.0.00.20 15.8X GeneMark v3.3, Glimmer2 v2.13 728 4240 4817 42 454-FLX USA Infant feces collected from UK DSM 14610 United Kingdom Infant feces Homo sapiens Infant Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Human fecal, Host, Human intestinal microflora Motile Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Roseburia BACTERIAL Roseburia inulinivorans DSM 16841 DSM 16841 Roseburia inulinivorans DSM 16841 DSM 16841 Yes Gi02853 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 360807 30757 003581_GCAT 730 643886006 ACFY00000000, NZ_ACFY00000000 Complete Newbler 2.0.00.20 15.8X 179 4048 4473 41 454-FLX USA Human feces collected in UK DSM 16841 United Kingdom Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Host Motile Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Roseburia BACTERIAL Roseburia inulinivorans L1-83 L1-83 Unknown Gi02854 Genome targeted Public Washington Univ NIH Gordon J jgordon@wustl.edu Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 360807 003582_GCAT 729 0 0 0 0 USA Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Host, Human intestinal microflora Motile Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Roseomonas Roseomonas cervicalis BACTERIAL Roseomonas cervicalis E7107, ATCC 49957 E7107, ATCC 49957 Roseomonas cervicalis ATCC 49957 CIP 104027, ATCC 49957 Yes Gi02855 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525371 31527 SRS001970 003583_GCAT 731 75850 0 In progress 541099 Newbler/1.1.02.12 29.28X 1817 4354 0 70.4 454-FLX USA Human vaginal sample ATCC Human vaginal sample Homo sapiens Female Urogenital tract Vaginal Aerobe Coccus-shaped Mesophile gram- Free living Chains, Pairs Fresh water, Host, Human vaginal microflora 35 Motile Catalase positive Bacteria Firmicutes Clostridia Clostridiales Blautia Blautia hansenii BACTERIAL Blautia hansenii VPI C7-24, DSM 20583 VPI C7-24, DSM 20583 Blautia hansenii DSM 20583 ATCC 27752, DSM 20583 Yes Gi02856 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 537007 30021 003584_GCAT 748 14002 643886146 NZ_ABYU00000000, ABYU00000000 Complete 283102 Newbler 2.0.00.20 21.5X GeneMark v3.3, Glimmer2 v2.13 110 3022 3285 38 454-FLX USA Human feces DSM 20583 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living None Human fecal, Host, Human intestinal microflora 37 Nonmotile Bacteria Firmicutes Clostridia Clostridiales Blautia Blautia luti BACTERIAL Ruminococcus luti BInIX, DSM 14534 BInIX, DSM 14534 Blautia luti DSM 14534 CCUG 45635, DSM 14534 Yes Gi02857 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 649762 38333 003585_GCAT 751 22899 0 In progress 0 0 43.3 USA Human feces DSM 14534 Germany Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Human intestinal microflora, Host 37 Nonmotile Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Ruminococcus Ruminococcus sp. 5_1_39BFAA BACTERIAL Ruminococcus sp. 5_1_39BFAA 5_1_39BFAA Ruminococcus sp. 5_1_39B_FAA BEI HM-71 Unknown Gi02861 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 457412 32503 003589_GCAT 753 0 NZ_ACII00000000, ACII00000000 Draft 21x 200 3801 3579 41 454 USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Slackia Slackia exigua BACTERIAL Slackia exigua S-7, ATCC 700122 S-7, ATCC 700122 Slackia exigua ATCC 700122 ATCC 700122 Yes Gi02865 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 649764 38335 003593_GCAT 762 11366 0 ACUX00000000, NZ_ACUX00000000 Draft 28.6x 29 2081 0 62 454 USA necrotic pulps of human deciduous teeth, Japan Japan Homo sapiens deciduous teeth Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Host Nonmotile Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium spiritivorum BACTERIAL Sphingobacterium spiritivorum ATCC 33300 ATCC 33300 Sphingobacterium spiritivorum ATCC 33300 DSM 2582, ATCC 33300 No Gi02866 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525372 31529 003594_GCAT 765 2503 643886135 NZ_ACHB00000000, ACHB00000000 Complete 425579 Newbler/1.1.03.19 19.88X 122 5218 4975 39.9 Illumina, 454-FLX USA Vaginal secretion ATCC Vaginal secretion Homo sapiens Female Urogenital tract Vaginal secretions Vaginal Mesophile gram- Free living Host, Human vaginal microflora 30 Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus MN8 MN8 Staphylococcus aureus subsp. aureus MN8 BEI HM-162 Unknown Gi02870 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 548470 31533 SRS001973 003598_GCAT 769 174938 643886121 NZ_ACJA00000000, ACJA00000000 Draft 516081 Newbler/1.1.03.24 28x 127 2840 2970 32 454-FLX, Illumina USA Human vaginal sample from tampon Homo sapiens Female Urogenital tract Vaginal Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Host Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus USA300 USA300 Staphylococcus aureus subsp. aureus USA300 Gr00058 Gi02872 Resequencing incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical 367830 40073 003600_GCAT 0 In progress 0 0 0 Illumina USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Host Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus capitis BACTERIAL Staphylococcus capitis SK14 SK14 Staphylococcus capitis SK14 BEI Shipping Unknown Gi02873 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ STACA0001 Medical, Human Microbiome Project (HMP) 553212 31013 SRS001041 003601_GCAT 785 643886010 NZ_ACFR00000000, ACFR00000000 Draft Newbler 1.1.03.24-64-7 18X 32 2400 2230 32.8 USA bloodstream of a premature infant that died of sepsis Blaser bloodstream of a premature infant that died of sepsis Homo sapiens Male Infant Died of sepsis Skin Right arm Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Host, Human skin Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis BACTERIAL Staphylococcus epidermidis M23864:W2 M23864:W2 Staphylococcus epidermidis M23864:W2(grey) BEI HM-144 Unknown Gi02874 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525375 34643 003602_GCAT 794 236219 0 In progress Newbler/2.0-02232009 34X 70 0 0 0 USA Human skin sample Homo sapiens Skin Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae TCH8431/19A TCH8431/19A Streptococcus pneumoniae TCH8431/19A BEI HM-145 Unknown Gi02901 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525381 34659 003630_GCAT 837 HOMD: tax_734 48329 0 NZ_ACJP00000000, ACJP00000000 Draft Newbler/1.1.03.24 59.55X 369 2057 2432 40 Sanger, 454-FLX USA Homo sapiens Airways Respiratory tract Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. 2_1_36FAA BACTERIAL Streptococcus sp. 2_1_36FAA 2_1_36FAA BEI Shipping Unknown Gi02902 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 469609 37947 003631_GCAT 847 22071 0 In progress 0 0 0 USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Host Nonmotile Bacteria Chloroflexi Thermomicrobia (class) Thermomicrobiales Thermomicrobiaceae Thermomicrobium BACTERIAL Thermomicrobium sp. AY250886, JCVIHMP007 AY250886, JCVIHMP007 Thermomicrobium sp. JCVIHMP007 Unknown Gi02904 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 553168 31371 003633_GCAT 901 0 In progress 0 0 0 USA Human skin Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Thermophile Free living Pairs, Singles Host Nonmotile Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema Treponema amylovorum BACTERIAL Treponema amylovorum JCVIHMP008 JCVIHMP008 Treponema amylovorum JCVIHMP008 ATCC 700288 Yes Gi02905 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Human Microbiome Project (HMP), Medical 553169 31373 003634_GCAT 859 0 In progress 0 0 0 USA subgingival plaque from a human deep periodontal lesion, 1995 Dewhirst 1995 Homo sapiens deep periodontal lesion Oral Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Host Motile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Tsukamurellaceae Tsukamurella Tsukamurella tyrosinosolvens BACTERIAL Tsukamurella tyrosinosolvens JCVIHMP024 JCVIHMP024 Tsukamurella tyrosinosolvens JCVIHMP024 Unknown Gi02876 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 553193 31399 003604_GCAT 861 13275 0 In progress 0 0 0 USA Human skin sample Blaser 9226890 Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Host Nonmotile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Veillonella Veillonella sp. 3_1_44 BACTERIAL Veillonella sp. 3_1_44 3_1_44 BEI HM-64 Unknown Gi02879 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 457416 003607_GCAT 873 0 DNA Received 0 0 0 USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Host Nonmotile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Veillonella Veillonella sp. 6_1_27 BACTERIAL Veillonella sp. 6_1_27 6_1_27 BEI HM-49 Unknown Gi02880 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 450749 003608_GCAT 874 0 DNA Received 0 0 0 USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Leuconostocaceae Weissella Weissella paramesenteroides BACTERIAL Weissella paramesenteroides ATCC 33313 ATCC 33313 Weissella paramesenteroides ATCC 33313 DSM 20288, CIP 102421, CCUG 30068, ATCC 33313 Yes Gi02881 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 585506 34661 003609_GCAT 877 352468 0 NZ_ACKU00000000, ACKU00000000 Complete Newbler/2.0-011609 3807X 36 1962 2020 37 Sanger, 454-FLX USA ATCC Homo sapiens Gastrointestinal tract Aerobe Coccus-shaped Mesophile gram+ Free living Host Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae Erysipelotrichaceae bacterium 5_2_54FAA BACTERIAL Erysipelotrichaceae bacterium 5_2_54FAA 5_2_54FAA BEI HM-72 Unknown Gi02883 Genome targeted Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 552396 003611_GCAT 863 0 DNA Received 0 0 0 USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Mesophile gram+ Free living Host Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Enterobacteriaceae bacterium 9_2_54FAA BACTERIAL Enterobacteriaceae bacterium 9_2_54FAA 9_2_54FAA BEI HM-46 Unknown Gi02884 Genome targeted Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 469613 003612_GCAT 864 0 DNA Received 0 0 0 USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Mesophile gram- Free living Host Bacteria Firmicutes Bacilli Bacillales Bacillaceae Anoxybacillus Anoxybacillus flavithermus BACTERIAL Anoxybacillus flavithermus WK1, DSM 2641 WK1, DSM 2641 Anoxybacillus flavithermus WK1 IFO 15317, NBRC 15317, DSM 2641 Yes Gc00883 Gi02887 Genome Complete and Published Public Univ of Hawaii at Manoa Alam M alam@hawaii.edu 2008-11-13 Genome Biol 9, R161 Biotechnological 491915 28245 003615_GCAT 14518 643348508 NC_011567 Complete 3Kb, 6Kb 55975 pUC118 Phred/Phrap/Consed, CAP3, Seqman II Glimmer 2846 2863 1 0 41.8 USA waste water drain at the Wairakei geothermal power station in New Zealand New Zealand waste water drain at the Wairakei geothermal power station in New Zealand -38.626686 176.103491 Facultative Rod-shaped Sporulating Thermophile 5.5 - 10 Yellow gram+ Free living None Fresh water, Hot spring 60 - 65 Motile Eukaryota Apicomplexa Gregarinia Eugregarinida Lecudinidae Ascogregarina Ascogregarina taiwanensis EUKARYAL Ascogregarina taiwanensis Taoyuan-1 Taoyuan-1 Ascogregarina taiwanensis Taoyuan-1 Gi02890 Genome incomplete Public Univ of Minnesota 158379 27765 003618_GCAT 0 0 0 0 USA Oocysts were obtained and purified from ground matter of Aedes albopictus adults maintained in a mosquito colony at the Chang Gung University Oocysts were obtained and purified from ground matter of Aedes albopictus adults maintained in a mosquito colony at the Chang Gung University Parasite Eukaryota Arthropoda Insecta Lepidoptera Nymphalidae Melitaea EUKARYAL Melitaea cinxia Glanville fritillary Melitaea cinxia Ge00287 EST incomplete Public Penn State Univ Marden J jhm10@psu.edu http://www.bio.psu.edu/people/faculty/Marden/ 113334 20761 003619_GCAT 0 0 0 0 454 USA normalized cDNA from whole larvae, pupae, and adults collected in Aland, Finland Finland normalized cDNA from whole larvae, pupae, and adults collected in Aland, Finland 60.228695 20.352796 Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium Plasmodium falciparum EUKARYAL Plasmodium falciparum 7G8 7G8 Plasmodium falciparum 7G8 Gi02891 Genome incomplete Public Broad Institute Wirth DF dfwirth@hsph.harvard.edu 57266 20851 003620_GCAT 0 ABGZ01000000 Draft 0 0 0 USA Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium Plasmodium falciparum EUKARYAL Plasmodium falciparum D10 D10 Plasmodium falciparum D10 Gi02892 Genome incomplete Public Broad Institute Wirth DF dfwirth@hsph.harvard.edu 478861 20857 003621_GCAT 0 ABGX01000000 Draft 0 0 0 USA Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium Plasmodium falciparum EUKARYAL Plasmodium falciparum D6 D6 Plasmodium falciparum D6 Gi02893 Genome incomplete Public Broad Institute Wirth DF dfwirth@hsph.harvard.edu 478860 20853 003622_GCAT 0 ABGY01000000 Draft 0 0 0 USA Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium Plasmodium falciparum EUKARYAL Plasmodium falciparum FCC-2/Hainan FCC-2/Hainan Plasmodium falciparum FCC-2/Hainan Gi02894 Genome incomplete Public Broad Institute Wirth DF dfwirth@hsph.harvard.edu 478862 20859 003623_GCAT 0 ABGW01000000 Draft 0 0 0 USA Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium Plasmodium falciparum EUKARYAL Plasmodium falciparum K1 K1 Plasmodium falciparum K1 Gi02895 Genome incomplete Public Broad Institute Wirth DF dfwirth@hsph.harvard.edu 5839 20861 003624_GCAT 0 ABGV01000000 Draft 0 0 0 USA Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium Plasmodium falciparum EUKARYAL Plasmodium falciparum RO-33 RO-33 Plasmodium falciparum RO-33 Gi02896 Genome incomplete Public Broad Institute Wirth DF dfwirth@hsph.harvard.edu 5834 20863 003625_GCAT 0 ABGU01000000 Draft 0 0 0 USA Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium Plasmodium falciparum EUKARYAL Plasmodium falciparum Santa Lucia Santa Lucia Plasmodium falciparum Santa Lucia Gi02897 Genome incomplete Public Broad Institute Wirth DF dfwirth@hsph.harvard.edu 478859 20849 003626_GCAT 0 ABHA01000000 Draft 0 0 0 USA Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium Plasmodium falciparum EUKARYAL Plasmodium falciparum Senegal_V34.04 Senegal_V34.04 Plasmodium falciparum Senegal_V34.04 Gi02898 Genome incomplete Public Broad Institute Wirth DF dfwirth@hsph.harvard.edu 478863 20865 003627_GCAT 0 ABGT01000000 Draft 0 0 0 USA Eukaryota Apicomplexa Aconoidasida Haemosporida Plasmodium Plasmodium falciparum EUKARYAL Plasmodium falciparum VS/1 VS/1 Plasmodium falciparum VS/1 Gi02899 Genome incomplete Public Broad Institute Wirth DF dfwirth@hsph.harvard.edu 478864 20867 003628_GCAT 0 ABGS01000000 Draft 0 0 0 USA Bacteria Firmicutes Clostridia Halanaerobiales Halobacteroidaceae Acetohalobium Acetohalobium arabaticum BACTERIAL Acetohalobium arabaticum Z-7288, DSM 5501 Z-7288, DSM 5501 Acetohalobium arabaticum DSM 5501 ATCC 49924, DSM 5501 Yes Gi02906 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 574087 32769 003635_GCAT 14306 0 0 0 0 USA "Lagoons from East Crimea, Arabat spit, USSR" Russia East Crimea, Arabat spit, USSR Anaerobe Mesophile Halophile gram+ Free living None Fresh water 37 Acetogenic Organotroph, Methylotroph, Chemolithotroph Archaea Crenarchaeota Thermoprotei Desulfurococcales Desulfurococcaceae Acidilobus ARCHAEAL Acidilobus aceticus 1904, DSM 11585 1904, DSM 11585 JCM 11320, ATCC BAA-268, DSM 11585 Yes Gi02907 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Biotechnological, Tree of Life, GEBA 105851 003636_GCAT 112056 0 0 0 53.8 USA Acidic hot spring from Moutnovski volcano in Kamchatka, Russia Russia Moutnovski volcano in Kamchatka, Russia "5,512,380" "9,086,146" Obligate anaerobe Coccus-shaped Hyperthermophile 2.0 - 6.0 gram- Free living None Hot spring, Fresh water 85 Nonmotile Thermoacidophile, Acidophile Bacteria Synergistetes [Clostridiales] Family XV. Incertae Sedis Aminobacterium Aminobacterium colombiense BACTERIAL Aminobacterium colombiense ALA-1, DSM 12261 ALA-1, DSM 12261 Aminobacterium colombiense DSM 12261 DSM 12261 Yes Gi02908 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org GEBA, Wastewater treatment, Tree of Life 572547 32587 003637_GCAT 1649 0 Draft 0 0 46 USA Anaerobic lagoon of dairy wastewater treatment plant in Colombia Colombia 16887649 Anaerobic lagoon of dairy wastewater treatment plant in Colombia Obligate anaerobe Curved-shaped Nonsporulating Mesophile 7.3 0.2 - 03 um 3 - 4 um gram- Free living Pairs, Singles None Fresh water, Wastewater 37 Archaea Euryarchaeota Archaeoglobi Archaeoglobales Archaeoglobaceae Archaeoglobus Archaeoglobus profundus ARCHAEAL Archaeoglobus profundus Av18, DSM 5631 Av18, DSM 5631 Archaeoglobus profundus DSM 5631 DSM 5631, NBRC 100127, JCM 9629 Yes Gi02909 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Tree of Life, GEBA 572546 32583 003638_GCAT 71597 0 0 0 41 USA "Deep sea hydrothermal vents; Mexico, Gulf of California, Guaymas Basin" Mexico Deep sea hydrothermal vents; Mexico, Gulf of California, Guaymas Basin Anaerobe Hyperthermophile gram- Free living None Deep sea, Marine, Hydrothermal vent 85 Motile Chemolithoautotroph Archaea Euryarchaeota Archaeoglobi Archaeoglobales Archaeoglobaceae Archaeoglobus ARCHAEAL Archaeoglobus veneficus SNP6, DSM 11195 SNP6, DSM 11195 DSM 11195 Yes Gi02910 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Tree of Life, GEBA 58290 003639_GCAT 740 0 0 0 46 USA "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Black smoker wall, 3500m depth; Mid-Atlantic Ridge Anaerobe Hyperthermophile gram- Free living Marine, Deep sea 75 Motile Barophile Chemolithoautotroph Archaea Crenarchaeota Thermoprotei Caldisphaerales Caldisphaeraceae Caldisphaera ARCHAEAL Caldisphaera lagunensis IC-154, DSM 15908 IC-154, DSM 15908 JCM 11604, MCC-UPLB 1331, ANMR 0165, DSM 15908 Yes Gi02911 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 200415 003640_GCAT 78319 0 0 0 31 USA An acidic hot spring; Philippines Phillipines An acidic hot spring; Philippines Anaerobe Coccus-shaped Hyperthermophile gram- Free living Singles, Pairs Hot spring, Fresh water 75 Acidophile Heterotroph Bacteria Caldithrix BACTERIAL Caldithrix abyssi LF13, DSM 13497 LF13, DSM 13497 VKM B-2286, DSM 13497 Yes Gi02912 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 187145 003641_GCAT 24135 0 0 0 42.5 USA "Deep-sea hydrothermal chimney sample collected at a vent site at 14 degrees 45' N, 44 degrees 59' W on the Mid-Atlantic Ridge" Deep-sea hydrothermal chimney sample collected at a vent site at 14 degrees 45' N, 44 degrees 59' W on the Mid-Atlantic Ridge 14.75 -44.983333 Anaerobe Rod-shaped Thermophile 6.8 - 7.0 gram- Free living Marine, Deep sea, Hydrothermal vent 60 Nonmotile Mixotroph Bacteria Aquificae Aquificae (class) Aquificales Desulfurobacteriaceae Desulfurobacterium BACTERIAL Desulfurobacterium thermolithotrophum BSA, DSM 11699 BSA, DSM 11699 DSM 11699 Yes Gi02913 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Biotechnological, GEBA, Tree of Life 64160 003642_GCAT 1260 0 0 0 35 USA Deep-sea hydrothermal vent chimney; Mid-Atlantic Ridge 23022'N-44056'W Mid-Atlantic Ridge 23.366667 -44.933333 Anaerobe Rod-shaped Nonsporulating Thermophile 6.0 gram- Free living Pairs, Singles 70 Motile Sulfur reducer Autotroph Archaea Crenarchaeota Thermoprotei Desulfurococcales Desulfurococcaceae Desulfurococcus ARCHAEAL Desulfurococcus mucosus DSM 2162 DSM 2162 DSM 2162, ATCC 35584 Yes Gi02914 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA, Biotechnological 2275 003643_GCAT 0 0 0 51 USA Hot solfataric spring; Iceland Iceland Hot solfataric spring; Iceland Anaerobe Coccus-shaped Hyperthermophile gram- Free living None Fresh water, Sulfur spring 85 Motile Sulfur respiration Organotroph Bacteria Cyanobacteria Chroococcales Microcystis Microcystis aeruginosa BACTERIAL Microcystis aeruginosa NIES-843 NIES-843 Blue-green alga Microcystis aeruginosa NIES-843 NIES-843 Gc00706 Genome Complete and Published Public Kazusa DNA Research Institute, Univ of Tsukuba KDRI, NIES Kaneko T kaneko@kazusa.or.jp MAE 2007-12-31 DNA Research 14, 247-56 Animal Pathogen, Medical, Human Pathogen, Environmental 449447 27835 003644_GCAT 641522640 NC_010296 Complete 2.6 Kb, 34 Kb Phrap 6.5x Glimmer 3.02 5842 6366 1 0 42.3 Sanger Japan Lake Kasumigaura Ibaraki Japan from Otsuka, Shigeto Isolated by Otsuka, Shigeto 29-August-1997 Japan Lake Kasumigaura Ibaraki Japan 36.040278 140.394167 Aerobe Coccus-shaped Mesophile gram- Free living Singles Gastroenteritis, Skin irritation, Hepatic inflammation Fresh water, Fresh water Nonmotile Toxic, Bloom forming Bacteria Deferribacteres Deferribacteres (class) Deferribacterales Deferribacteraceae Flexistipes BACTERIAL Flexistipes sinusarabici MAS10, DSM 4947 MAS10, DSM 4947 DSM 4947 Gi02915 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org GEBA, Tree of Life 2352 003645_GCAT 1874 0 0 0 39 USA Brine water; Atlantis II Deep, Red Sea Brine water; Atlantis II Deep, Red Sea Anaerobe Mesophile gram- Free living None Marine 45 - 50 Bacteria Firmicutes Clostridia Halanaerobiales Halobacteroidaceae Halanaerobacter BACTERIAL Halanaerobacter chitinivorans W5C8, DSM 09569 W5C8, DSM 09569 DSM 09569, OCM 229 Gi02916 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org GEBA, Tree of Life 42419 003646_GCAT 200257 0 0 0 35 USA Anaerobe Mesophile gram+ Free living 37 Bacteria Firmicutes Clostridia Halanaerobiales Halanaerobiaceae Halanaerobium Halanaerobium praevalens BACTERIAL Halanaerobium praevalens DSM 2228 DSM 2228 Halanaerobium praevalens DSM 2228 DSM 2228, ATCC 33744 Yes Gi02917 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org GEBA, Tree of Life 572479 32591 003647_GCAT 14319 0 0 0 27 USA Great Salt Lake sediment USA Great Salt Lake sediment 41.153066 -112.66754 Anaerobe Rod-shaped Sporulating Mesophile Halophile 6.3 - 7.4 gram+ Free living Pairs, Singles None Fresh water, Sediment 34 - 42 Nonmotile Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanohalophilus Methanohalophilus mahii ARCHAEAL Methanohalophilus mahii DSM 05219 DSM 05219 Methanohalophilus mahii DSM 5219 DSM 05219, OCM 68, ATCC 35705 Yes Gi02918 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org GEBA, Tree of Life 547558 30711 003648_GCAT 0 Draft 2000 2178 49 USA "Anaerobic sediment from Great Salt Lake, USA" USA Anaerobic sediment from Great Salt Lake, USA 41.177342 -112.50211 Anaerobe Coccus-shaped Mesophile Halophile 6.5 - 7.5 gram- Free living None Fresh water, Sediment 37 Nonmotile Methanogen Methylotroph Archaea Euryarchaeota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanolacinia ARCHAEAL Methanolacinia paynteri G-2000, DSM 2545 G-2000, DSM 2545 OCM 124, ATCC 33997, DSM 2545 Yes Gi02919 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org GEBA, Tree of Life 230356 003649_GCAT 98537 0 0 0 0 Sanger, 454 USA "Marine sediment from Cayman Islands, USA" USA Marine sediment from Cayman Islands, USA 19.513469 -80.566956 Anaerobe Mesophile 7.0 gram- Free living None Fresh water, Marine, Sediment 37 Nonmotile Methanogen Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanolobus ARCHAEAL Methanolobus tindarius DSM 2278 DSM 2278 DSM 2278, OCM 150, ATCC 35996 Yes Gi02920 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 2221 003650_GCAT 423 0 0 0 46 Sanger, 454 USA "Sediment from Lakes of Marinello, Italy" Italy Sediment from Lakes of Marinello, Italy 38.132591 15.05422 Anaerobe Coccus-shaped Mesophile gram- Free living None Fresh water, Sediment 25 Methanogen Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanomethylovorans ARCHAEAL Methanomethylovorans hollandica DSM 15978 DSM 15978 DSM 15978 Yes Gi02921 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 101192 003651_GCAT 431 0 0 0 38 USA "Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands" Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Obligate anaerobe Disc-shaped Mesophile 6.5 - 7.0 gram- Free living Clusters None Fresh water, Fresh water, Sediment 37 Nonmotile Methanogen Methylotroph Archaea Euryarchaeota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanomicrobium ARCHAEAL Methanomicrobium mobile DSM 1539 DSM 1539 ATCC 35094, DSM 1539, JCM 10551 Yes Gi02922 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 2205 003652_GCAT 95411 0 0 0 0 USA Bovine rumen Bovine rumen Bovine Gastrointestinal tract Rumen Anaerobe Rod-shaped Nonsporulating Mesophile 6.1 gram- Free living Rumen 37 Motile Methanogen Archaea Euryarchaeota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoplanus ARCHAEAL Methanoplanus limicola M3, DSM 02279 M3, DSM 02279 DSM 02279, OCM 101, ATCC 35062 Yes Gi02923 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 2315 003653_GCAT 252 0 0 0 48 USA Mud of drilling swamp from Italy Italy Mud of drilling swamp from Italy Anaerobe Mesophile gram- Free living None Mud 30 - 35 Methanogen Archaea Euryarchaeota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoplanus ARCHAEAL Methanoplanus petrolearius SEBR 4847, DSM 11571 SEBR 4847, DSM 11571 OCM 486, DSM 11571 Yes Gi02924 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Tree of Life, GEBA 54120 003654_GCAT 260 0 0 0 50 USA Offshore oil field from Gulf of Guinea Guinea Offshore oil field from Gulf of Guinea Anaerobe Mesophile 7.0 gram- Free living None Oil fields 37 Nonmotile Methanogen Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosalsum ARCHAEAL Methanosalsum zhilinae WeN5, DSM 4017 WeN5, DSM 4017 DSM 4017, OCM 62 Yes Gi02925 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 39669 003655_GCAT 333115 0 0 0 38 USA "Sediment of alkaline lake in Wadi el Natrun, Egypt" Egypt Sediment of alkaline lake in Wadi el Natrun, Egypt 30.437189 30.334396 Anaerobe Mesophile Halophile gram- Free living None Fresh water, Sediment Nonmotile Methanogen, Alkaliphile Methylotroph Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Rhodospirillaceae Azospirillum BACTERIAL Azospirillum lipoferum 4B 4B Gi02926 Genome incomplete Public Genoscope Barbe V vbarbe@genoscope.cns.fr Biotechnological 193 003656_GCAT 101185 0 0 0 0 France Rice field of Camargue (South of France) in 1982 1982 France Rice field of Camargue (South of France) in 1982 43.533333 4.5 Facultative Rod-shaped Mesophile gram- Free living None Rhizosphere, Soil Motile Nitrogen fixation, Organic fertilizer Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus BACTERIAL Enterococcus lactis CK1114 CK1114 Gi02927 Genome incomplete Public Genoscope Barbe V vbarbe@genoscope.cns.fr Food industry 357441 003657_GCAT 141248 0 0 0 0 France Cheese in Stavropol region of Russia Russia Cheese in Stavropol region of Russia Facultative Coccus-shaped Mesophile gram+ Free living Singles, Pairs Food Nonmotile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila BACTERIAL Legionella pneumophila #1 #1 serogroup 1 Gi02928 Genome incomplete Public Genoscope Barbe V vbarbe@genoscope.cns.fr Medical, Human Pathogen 66976 003658_GCAT 0 15x 3500 0 0 Sanger, 454 France newly emerging epidemic strain in France France newly emerging epidemic strain in France Homo sapiens Patient Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Biofilm, Fresh water, Soil, Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila BACTERIAL Legionella pneumophila #2 #2 serogroup 1 Gi02929 Genome incomplete Public Genoscope Bruce D microbes@cuba.jgi-psf.org Medical 66976 003659_GCAT 0 15x 3500 0 0 454, Sanger France water system of a French hospital France water system of a French hospital Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Biofilm, Fresh water, Soil, Fresh meat, Host Motile Chemoorganotroph Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanothermaceae Methanothermus Methanothermus fervidus ARCHAEAL Methanothermus fervidus DSM 2088 DSM 2088 Methanothermus fervidus DSM 2088 DSM 2088, ATCC 43054, JCM 10308 Yes Gi02930 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Tree of Life, GEBA 523846 33689 003660_GCAT 46 0 In progress 0 0 0 USA Hot solfataric spring from Iceland Iceland Hot solfataric spring from Iceland Anaerobe Rod-shaped Hyperthermophile gram- Free living Singles, Chains None Hot spring, Fresh water 83 Motile Methanogen Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Natronococcus ARCHAEAL Natronococcus occultus SP4, DSM 3396 SP4, DSM 3396 ATCC 43101, CCM 3871, DSM 3396, NCMB 2192 Yes Gi02931 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Tree of Life, GEBA 29288 003661_GCAT 674 0 0 0 64 USA Soda lake Lake Magadi Kenya Soda lake Lake Magadi -1.944676 36.252237 Aerobe Coccus-shaped Mesophile Halophile 9.5 gram- Free living Clusters, Pairs, Singles Fresh water 37 Nonmotile Alkaliphile Heterotroph Bacteria Deinococcus-Thermus Deinococci Thermales Thermaceae Oceanithermus Oceanithermus profundus BACTERIAL Oceanithermus profundus 506, DSM 14977 506, DSM 14977 Oceanithermus profundus DSM 14977 DSM 14977, VKM B-2274 Yes Gi02932 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Tree of Life, GEBA 670487 40223 003662_GCAT 20463 0 Awaiting DNA 0 0 63 USA Deep-sea hot vent; 13?N, East Pacific Rise Deep-sea hot vent; 130N, East Pacific Rise Microaerophilic Rod-shaped Thermophile 7.5 Free living Marine, Deep sea, Hydrothermal vent 60 Nonmotile Organotroph, Lithoheterotroph, Chemoorganoheterotroph Archaea Euryarchaeota Thermococci Thermococcales Thermococcaceae Palaeococcus Palaeococcus ferrophilus ARCHAEAL Palaeococcus ferrophilus DSM 13482 DSM 13482 Palaeococcus ferrophilus DSM 13482 DSM 13482, JCM 10417 Yes Gi02933 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Tree of Life, GEBA 588319 33583 003663_GCAT 807 0 0 0 53.5 USA "deep-sea hydrothermal vent chimney at the Myojin Knoll in the Ogasawara-Bonin Arc, Japan" Japan deep-sea hydrothermal vent chimney at the Myojin Knoll in the Ogasawara-Bonin Arc, Japan 1338 meters Anaerobe Coccus-shaped Hyperthermophile 6.0 gram- Free living Pairs, Singles None Marine, Hydrothermal vent, Deep sea 83 Motile Barophile Chemoorganotroph Archaea Crenarchaeota Thermoprotei Desulfurococcales Pyrodictiaceae Pyrolobus ARCHAEAL Pyrolobus fumarii DSM 11204 DSM 11204 DSM 11204 Yes Gi02934 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Tree of Life, GEBA 54252 003664_GCAT 878 0 0 0 53 USA Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Aerobe Coccus-shaped Hyperthermophile 5.5 gram- Free living None Deep sea, Hydrothermal vent, Marine 106 Barophile Chemolithoautotroph Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Propionigenium BACTERIAL Propionigenium modestum Succ2, DSM 2376 Succ2, DSM 2376 DSM 2376 Yes Gi02935 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org GEBA, Tree of Life 2333 003665_GCAT 11301 0 0 0 34 USA "Black, anaerobic mud of Canale Grande, Venice, Italy" Italy Black, anaerobic mud of Canale Grande, Venice, Italy 45.440229 12.310864 Saliva Anaerobe Coccus-shaped Nonsporulating Mesophile 7.1 - 7.7 gram- Free living Chains, Pairs, Singles None Fresh water, Mud, Marine, Human saliva 32 Nonmotile Chemoorganotroph Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Spirochaeta BACTERIAL Spirochaeta africana Z-7692, DSM 8902 Z-7692, DSM 8902 DSM 8902 Yes Gi02936 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 46355 003666_GCAT 3802 0 0 0 56 USA Bacterial bloom in the brine under trona from alkaline equatorial Lake Magadi in Kenya Kenya Bacterial bloom in the brine under trona from alkaline equatorial Lake Magadi in Kenya -1.944676 36.252237 Anaerobe Spiral-shaped Mesophile Halophile 8.8 - 9.7 gram- Free living None Fresh water 35 Motile Saccharolytic, Utilize carbohydrates, Orange-colored Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Spirochaeta BACTERIAL Spirochaeta aurantia J1, DSM 1902 J1, DSM 1902 ATCC 25082, DSM 1902 Yes Gi02937 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 147 003667_GCAT 4145 0 0 0 66 USA Fresh water mud Fresh water mud Anaerobe Spiral-shaped Mesophile gram- Free living None Fresh water, Mud 30 Motile Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Spirochaeta Spirochaeta smaragdinae BACTERIAL Spirochaeta smaragdinae SEBR 4228, DSM 11293 SEBR 4228, DSM 11293 Spirochaeta smaragdinae DSM 11293 DSM 11293 Yes Gi02938 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 573413 32637 003668_GCAT 3810 0 0 0 50 USA "Oil field of Congo, Africa" Congo Oil field of Congo, Africa Anaerobe Spiral-shaped Nonsporulating Mesophile 7.0 - 7.2 gram- Free living None Oil fields 35 Motile Utilize carbohydrates Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Spirochaeta Spirochaeta thermophila BACTERIAL Spirochaeta thermophila DSM 6192 DSM 6192 ATCC 49972, DSM 6192 No Gi02939 Genome incomplete Public Goettingen Genomics Laboratory Biotechnological 665571 39877 003669_GCAT 3812 0 Complete 0 0 52 Germany Brackish hot spring on Raoul Island, New Zealand New Zealand -29.266667 -177.916667 Anaerobe Spiral-shaped Hyperthermophile gram- Free living None Hot spring, Marine 65 Motile Utilize carbohydrates Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Stygiolobus ARCHAEAL Stygiolobus azoricus FC6, DSM 6296 FC6, DSM 6296 DSM 6296 Yes Gi02940 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Tree of Life, GEBA 41675 003670_GCAT 956 0 0 0 0 USA "Hot spring from Sao Miguel island, Azores" Azores Hot spring from Sao Miguel island, Azores Anaerobe Hyperthermophile gram- Free living None Hot spring, Marine 80 Sulfur reducer, Acidophile Chemolithoautotroph Archaea Crenarchaeota Thermoprotei Desulfurococcales Desulfurococcaceae Sulfophobococcus ARCHAEAL Sulfophobococcus zilligii K1, DSM 11193 K1, DSM 11193 DSM 11193, JCM 10309 Yes Gi02941 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 53426 003671_GCAT 936 0 0 0 0 USA "Hot alkaline spring, from Hveragerdi, Iceland" Iceland Hot alkaline spring, from Hveragerdi, Iceland Anaerobe Coccus-shaped Hyperthermophile 6.5 - 8.5 gram- Free living None Hot spring, Fresh water 85 Bacteria Firmicutes Clostridia Thermoanaerobacterales Thermoanaerobacterales Family III. Incertae Sedis Thermoanaerobacterium BACTERIAL Thermoanaerobacterium polysaccharolyticum KMTHCJ, DSM 13641 KMTHCJ, DSM 13641 ATCC BAA-17, DSM 13641 Yes Gi02942 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Tree of Life, GEBA 44256 003672_GCAT 13759 0 0 0 46 USA "Organic waste leachate, from a canning factory in Hoopeston, East Central Illinois" USA Organic waste leachate, from a canning factory in Hoopeston, East Central Illinois Anaerobe Rod-shaped Nonsporulating Thermophile 6.8 gram+ Free living Pairs, Singles None 65 Motile Saccharolytic Bacteria Aquificae Aquificae (class) Aquificales Aquificaceae Thermocrinis Thermocrinis albus BACTERIAL Thermocrinis albus HI 11/12, DSM 14484 HI 11/12, DSM 14484 DSM 14484, JCM 11386 Yes Gi02943 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Biotechnological, Tree of Life, GEBA 638303 37275 003673_GCAT 22567 0 0 0 0 USA whitisch steamers of the Hveragerthi area whitisch steamers of the Hveragerthi area Anaerobe Rod-shaped Hyperthermophile gram- Free living Clusters, Filaments, Singles Hot spring, Fresh water 80 Motile Pink-colored Chemolithoautotroph Bacteria Thermodesulfobacteria Thermodesulfobacteria (class) Thermodesulfobacteriales Thermodesulfobacteriaceae Thermodesulfatator Thermodesulfatator indicus BACTERIAL Thermodesulfatator indicus CIR 29812, DSM 15286 CIR 29812, DSM 15286 JCM 11887, DSM 15286 Yes Gi02944 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Tree of Life, GEBA 667014 40057 003674_GCAT 52699 0 In progress 2300 0 42 454-Titanium, Illumina USA Deep-sea hydrothermal vent site at the Kairei vent field on the Central Indian Ridge Indian Ocean Deep-sea hydrothermal vent site at the Kairei vent field on the Central Indian Ridge Indian Ocean Anaerobe Rod-shaped Nonsporulating Thermophile 6.25 gram- Free living None Marine, Hydrothermal vent, Deep sea 70 Motile Sulfate reducer Chemolithoautotroph Bacteria Firmicutes Clostridia Thermoanaerobacterales Thermodesulfobiaceae Thermodesulfobium BACTERIAL Thermodesulfobium narugense Na82, DSM 14796 Na82, DSM 14796 DSM 14796, JCM 11510 Yes Gi02945 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Biotechnological, Tree of Life, GEBA 184064 003675_GCAT 27351 0 0 0 35 USA Narugo hot spring; Japan Japan Narugo hot spring; Japan 38.743434 140.71658 Anaerobe Curved-shaped Nonsporulating Thermophile gram+ Free living None Hot spring 50 Motile Sulfate reducer Archaea Crenarchaeota Thermoprotei Desulfurococcales Desulfurococcaceae Thermosphaera Thermosphaera aggregans ARCHAEAL Thermosphaera aggregans M11TL, DSM 11486 M11TL, DSM 11486 DSM 11486 Yes Gi02946 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 633148 36571 003676_GCAT 923 0 In progress 0 0 46 USA Hot spring from Obsidian Pool at Yellowstone Natl. Park USA Hot spring from Obsidian Pool at Yellowstone Natl. Park Anaerobe Coccus-shaped Nonsporulating Hyperthermophile 6.5 gram- Free living Chains, Pairs, Singles None Hot spring, Solfataric field 85 Motile Heterotroph Bacteria Synergistetes Thermovirga Thermovirga lienii BACTERIAL Thermovirga lienii Cas60314, DSM 17291 Cas60314, DSM 17291 Thermovirga lienii DSM 17291 DSM 17291, ATCC BAA-1197 Yes Gi02948 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Biotechnological, Tree of Life, GEBA 580340 33163 003678_GCAT 143575 0 Draft 116 1923 1966 47 USA Production water from an oil well, Norway Norway 16825627 Production water from an oil well, Norway Obligate anaerobe Rod-shaped Nonsporulating Thermophile 6.5 - 7.0 0.4 - 0.8 um 2 - 3 um gram- Free living Chains, Singles None Fresh water, Oil fields 58 Motile Chemoorganotroph Bacteria Deinococcus-Thermus Deinococci Deinococcales Trueperaceae Truepera Truepera radiovictrix BACTERIAL Truepera radiovictrix RQ-24, DSM 17093 RQ-24, DSM 17093 DSM 17093, CIP 108686, LMG 22925 Yes Gi02949 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 649638 38371 003679_GCAT 131852 0 0 0 68 USA "Water sample from a hot spring runoffs on the Island of Sco Miguel in the Azores, Portugal" Portugal Water sample from a hot spring runoffs on the Island of Sco Miguel in the Azores, Portugal 37.946797 -25.490113 Aerobe Sphere-shaped Thermophile 7.5 - 7.9 Free living None Hot spring, Fresh water 50 Radiation resistant Chemoorganotroph Archaea Crenarchaeota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta distributa ARCHAEAL Vulcanisaeta distributa IC-017, DSM 14429 IC-017, DSM 14429 Vulcanisaeta distributa DSM 14429 JCM 11212, DSM 14429 Yes Gi02950 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 572478 32589 003680_GCAT 19003 0 0 0 45.4 USA "Hot spring from Kanagawa, Ohwakudani, Japan on 9/1993" September 1993 Japan Hot spring from Kanagawa, Ohwakudani, Japan on 9/1993 Anaerobe Rod-shaped Hyperthermophile 4.0 - 4.5 gram- Free living None Hot spring, Fresh water 90 Nonmotile Heterotroph Bacteria Deinococcus-Thermus Deinococci Thermales Thermaceae Vulcanithermus BACTERIAL Vulcanithermus mediatlanticus TR, DSM 14978 TR, DSM 14978 VKM B-2292, DSM 14978, JCM 11956 Yes Gi02951 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 206045 003681_GCAT 60062 0 0 0 68.4 USA "Deep-sea hydrothermal vent, collected at the Rainbow vent field on the Mid-Atlantic Ridge (36016'N, 33054'W)." Deep-sea hydrothermal vent, collected at the Rainbow vent field on the Mid-Atlantic Ridge (36016'N, 33054'W). 36.266667 -33.9 Microaerophilic Rod-shaped Nonsporulating Thermophile 6.7 Free living None Deep sea, Marine, Hydrothermal vent 65 Nonmotile Lithotroph, Heterotroph, Chemotroph Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae BACTERIAL Sphingobium sp. SYK-6 SYK-6 Gi02952 Genome targeted Public NITE Fujita N fujita-nobuyuki@nite.go.jp 165695 003682_GCAT 0 0 0 0 Japan Mesophile gram- Free living Soil Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Ruegeria Silicibacter sp. TrichCH4B BACTERIAL Silicibacter sp. TrichCH4B TrichCH4B Gi02953 Genome incomplete Public J. Craig Venter Institute Moore Foundation Mann E liz.mann@skio.usg.edu http://www.skio.peachnet.edu/people/mann/ Marine Microbial Initiative (MMI) 644076 37909 003683_GCAT 0 NZ_ACNZ00000000 Draft 7.2x 129 4670 4749 58 USA Trichodesmium colonies collected in the Caribbean Sea Trichodesmium colonies collected in the Caribbean Sea Surface Aerobe Rod-shaped Mesophile gram- Free living Marine Motile Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Ruegeria Ruegeria lacuscaerulensis BACTERIAL Silicibacter lacuscaerulensis ITI-1157 ITI-1157 DSM 11314 Yes Gi02954 Genome incomplete Public J. Craig Venter Institute Moore Foundation JCVI http://www.jcvi.org/cms/contact/ Marine Microbial Initiative (MMI) 644107 37681 003684_GCAT 5719 0 NZ_ACNX00000000 Draft 7.3x 47 3515 3349 63 USA Blue Lagoon, geothermal lake in Reykjanes peninsula, Iceland Iceland Blue Lagoon, Iceland 63.879 -22.434 20 cm Aerobe Rod-shaped Nonsporulating Mesophile Halophile 7.0 gram- Free living Marine 45 Nonmotile Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales BACTERIAL Rhodobacterales sp. KLH11 KLH11 Gi02955 Genome incomplete Public J. Craig Venter Institute Moore Foundation Hill R hillr@umbi.umd.edu http://www.jcvi.org/cms/contact/ Marine Microbial Initiative (MMI), Environmental 285892 003685_GCAT 0 0 0 0 USA "20m depth from Key Largo, Florida" USA 20m depth from Key Largo, Florida 25.119109 -80.417838 20 meters Mesophile gram- Free living Marine Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus sp. BACTERIAL Prochlorococcus sp. UH18301 UH18301 Gi02956 Genome incomplete Public J. Craig Venter Institute Moore Foundation Marine Microbial Initiative (MMI), Environmental 1220 003686_GCAT 0 0 0 0 USA 2007-07-14 USA 22.75 -158 125 meters Oval-shaped Mesophile gram- Free living Marine Nonmotile Photosynthetic Bacteria Proteobacteria Gammaproteobacteria gamma proteobacterium NOR5-3 BACTERIAL Gamma proteobacterium sp. NOR5-3 NOR5-3 gamma proteobacterium NOR5-3 Gi02957 Genome incomplete Public J. Craig Venter Institute Moore Foundation Amann R ramann@mpi-bremen.de http://www.mpi-bremen.de/en/Rudolf_Amann.html Marine Microbial Initiative (MMI), Environmental 566466 31353 003687_GCAT 0 NZ_ACCX00000000 Draft 7.73x 4203 0 56.3 USA "top oxic layer of a sandy sediment core, List, Sylt (55001'N, 8026'E) Germany, 19.10.2005" 19.10.2005 Germany top oxic layer of a sandy sediment core, List, Sylt, Germany 54.9725 8.3398 Mesophile gram- Free living None Sediment, Marine Bacteria Proteobacteria Gammaproteobacteria BACTERIAL Gamma proteobacterium sp. NOR5-1B NOR5-1B gamma proteobacterium NOR51-B Gi02958 Genome incomplete Public J. Craig Venter Institute Moore Foundation Amann R ramann@mpi-bremen.de http://www.mpi-bremen.de/en/Rudolf_Amann.html Marine Microbial Initiative (MMI), Environmental 565045 31355 003688_GCAT 0 NZ_ACCY00000000 Draft 8.2x 3247 0 56 USA "top oxic layer of a muddy sediment core, List, Sylt (55002'N, 8024'E) Germany, 19.10.2005" 19.10.2005 Germany top oxic layer of a muddy sediment core, List, Sylt, Germany 54.9725 8.3398 Mesophile gram- Free living None Surface water, Marine Bacteria Proteobacteria Gammaproteobacteria marine gamma proteobacterium HTCC2148 BACTERIAL Gamma proteobacterium sp. HTCC2148 HTCC2148 marine gamma proteobacterium HTCC2148 HTCC2148 Gi02959 Genome incomplete Public J. Craig Venter Institute Moore Foundation Amann R ramann@mpi-bremen.de http://www.mpi-bremen.de/en/Rudolf_Amann.html Marine Microbial Initiative (MMI), Environmental 247634 30725 003689_GCAT 0 NZ_ABXQ00000000 Draft 7.58x 4310 3831 52 USA 10 m water depth from station NH15, Oregon Coast, USA USA 10 m water depth from station NH15, Oregon Coast, USA 44.65167 -124.41167 10 meters Mesophile gram- Free living None Marine Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Citreicella Citreicella sp. SE45 BACTERIAL Citreicella sp. SE45 SE45 Gi02960 Genome incomplete Public J. Craig Venter Institute Moore Foundation Buchan A abuchan@utk.edu http://www.bio.utk.edu/micro/faculty/buchan.html Marine Microbial Initiative (MMI), Environmental 501479 37679 003690_GCAT 0 NZ_ACNW00000000 Draft 122 5523 5439 67 USA Spartina alterniflora (smooth cordgrass) detritus collected from the southeastern US salt marshes off Skidaway Island, GA USA Salt marshes of southeastern US coast Spartina alterniflora Mesophile gram- Free living None Marine Bacteria Cyanobacteria Chroococcales Synechococcus Synechococcus sp. UW69 BACTERIAL Synechococcus sp. UW69 UW69 Gi02961 Genome incomplete Public J. Craig Venter Institute Moore Foundation Rocap G rocap@ocean.washington.edu http://rocaplab.ocean.washington.edu/people/gabrielle Marine Microbial Initiative (MMI), Environmental 368493 003691_GCAT 0 0 0 0 USA Sargasso Sea 3/23/2002 Sargasso Sea 34.183333 -70.208333 5 meters Facultative Coccus-shaped Mesophile gram- Free living None Marine Motile Photoautotroph, Photosynthetic Bacteria Cyanobacteria Chroococcales Synechococcus BACTERIAL Synechococcus sp. WH8109 WH8109 Gi02962 Genome incomplete Public J. Craig Venter Institute Moore Foundation Marine Microbial Initiative (MMI), Environmental 166314 37911 003692_GCAT 85276 0 NZ_ACNY00000000 Draft 5 2118 0 60 USA Sargasso Sea Sargasso Sea 39.643333 -70.462 Facultative Coccus-shaped Mesophile gram- Free living None Marine Motile Photosynthetic, Photoautotroph Eukaryota Ascomycota Sordariomycetes Hypocreales Clavicipitaceae Epichloe Epichloe festucae EUKARYAL Epichloe festucae Ge00288 EST complete Public Univ of Kentucky NSF Schardl C schardl@uky.edu http://www.ca.uky.edu/agcollege/plantpathology/schardl/schardl.htm Agricultural 35717 003693_GCAT 0 Complete 108497 0 0 USA normalized cDNA libraries from asymptomatic inflorescences and stromata normalized cDNA libraries from asymptomatic inflorescences and stromata Grass plants None Host, Plant symbiont Symbiont Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis L2b/UCH-1 L2b/UCH-1 L2 Chlamydia trachomatis L2b/UCH-1/proctitis Gc00713 Genome Complete and Published Public Sanger Institute Wellcome Trust Parkhill J parkhill@sanger.ac.uk CTLon 2008-01-19 Genome Res. 18, 161-71 Animal Pathogen, Medical, Human Pathogen 471473 28585 003694_GCAT 641522615 NC_010280 Complete 304953 30.8x 1038 923 1 1 41.3 Sanger, 454-GS20 United Kingdom rectal swab of a 49-yr-old MSM who was HIV positive and Hepatitis C negative London Genital and Urinary Medicine (GUM) clinic in January 2006 January 2006 United Kingdom outbreak of proctitis in Europe Homo sapiens Male 49 years HIV positive and Hepatitis C negative Urogenital tract Rectal swab Rectal Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Respiratory infection, Proctitis, Bronchitis, Pharyngitis, Pneumonia Host Nonmotile Pathogen Eukaryota Basidiomycota Agaricomycetes Cantharellales Ceratobasidiaceae Thanatephorus Thanatephorus cucumeris EUKARYAL Thanatephorus cucumeris AG-3 AG-3 Gi02963 Genome incomplete Public J. Craig Venter Institute USDA Plant Pathogen, Agricultural 456999 003695_GCAT 0 0 0 0 Sanger, 454 USA Soil Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Thalassobium BACTERIAL Thalassiobium sp. R2A62 R2A62 Thalassiobium sp. R2A62 Gi02964 Genome incomplete Public J. Craig Venter Institute Moore Foundation Suzuki M suzuki@cbl.umces.edu http://www.cbl.umces.edu/cms108/View-user-profile.html?user=80 Marine Microbial Initiative (MMI) 633131 37677 003696_GCAT 0 NZ_ACOA00000000 Draft 8 3487 0 55 USA Subsurface water samples from 8 km west of the mouth of Yaquina Bay, Oregon USA Subsurface water samples from 8 km west of the mouth of Yaquina Bay, Oregon 44.65 -124.167 10 meters Mesophile gram- Free living None Marine Eukaryota Nematoda Chromadorea Tylenchida Heteroderidae Globodera Globodera pallida EUKARYAL Globodera pallida Gi02965 Genome incomplete Public Sanger Institute, Univ of Leeds BBSRC Agricultural 36090 003697_GCAT 0 0 0 0 United Kingdom Eukaryota Chordata Mammalia Primates Hominidae Pan EUKARYAL Pan paniscus bonobo Gi02966 Genome incomplete Public Max Planck Institute Paabo S paaboeva.mpg.de http://email.eva.mpg.de/~paabo/ 9597 003698_GCAT 0 0 0 0 454 Germany Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Rhizobium Rhizobium etli BACTERIAL Rhizobium etli CIAT 652 CIAT 652 Rhizobium etli CIAT 652 Gc00823 Gi02968 Genome Complete and Published Public UNAM Gonzalez V vgonzal@cifn.unam.mx RHECIAT 2008-06-19 Unpublished Biotechnological, Agricultural 491916 28021 003700_GCAT 348107 642555152 NC_010994 Complete 4513 6116 1 3 61.7 Mexico Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Mutualistic Singles None Host, Root nodule Motile Nitrogen fixation Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica 404ty 404ty Typhi Salmonella enterica subsp. enterica serovar Typhi str. 404ty Gi02969 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J parkhill@sanger.ac.uk Medical, Human Pathogen 497977 28289 003701_GCAT 367442 642979345 NZ_CAAQ00000000 Draft 8.5x 454, 24.6 Solexa 5600 0 52 454-GS20, Solexa United Kingdom Case of typhoid fever in Indonesia Indonesia Case of typhoid fever in Indonesia Homo sapiens Patient with typhoid fever Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Typhoid fever Host 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica AG3 AG3 Typhi Salmonella enterica subsp. enterica serovar Typhi str. AG3 Gi02970 Genome complete Public Sanger Institute Wellcome Trust Parkhill J parkhill@sanger.ac.uk Medical, Human Pathogen 496065 28307 003702_GCAT 369315 642979347 NZ_CAAY00000000 Draft 10.1x 454, 13.1x Solexa 4751 0 51 454-GS20, Solexa United Kingdom Case of typhoid fever in Vietnam in 2004 2004 Vietnam Case of typhoid fever in Vietnam in 2004 Homo sapiens Patient with typhoid fever Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs Typhoid fever Host 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica E00-7866 E00-7866 Typhi Salmonella enterica subsp. enterica serovar Typhi str. E00-7866 Gi02971 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J parkhill@sanger.ac.uk Medical, Human Pathogen 497976 28291 003703_GCAT 362506 642979344 NZ_CAAR00000000 Draft 10.5x 454 4800 0 52 454-GS20 United Kingdom Case of typhoid fever in Morocco in 2000 2000 Morocco Case of typhoid fever in Morocco in 2000 Homo sapiens Patient with typhoid fever Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs Typhoid fever Host 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica E01-6750 E01-6750 Typhi Salmonella enterica subsp. enterica serovar Typhi str. E01-6750 Gi02972 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J parkhill@sanger.ac.uk Medical, Human Pathogen 497975 28293 003704_GCAT 365543 642979343 NZ_CAAS00000000 Draft 8.2x 454 4584 7453 51 454-GS20 United Kingdom Case of typhoid fever in Senegal in 2001 2001 Senegal Case of typhoid fever in Senegal in 2001 Homo sapiens Patient with typhoid fever Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Typhoid fever Host 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica E02-1180 E02-1180 Typhi Salmonella enterica subsp. enterica serovar Typhi str. E02-1180 Gi02973 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J parkhill@sanger.ac.uk Medical, Human Pathogen 497974 28295 003705_GCAT 361069 642979342 NZ_CAAT00000000 Draft 13.1x 454 4740 0 51 454-GS20 United Kingdom Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Typhoid fever Host 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica E98-2068 E98-2068 Typhi Salmonella enterica subsp. enterica serovar Typhi str. E98-2068 Gi02975 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J parkhill@sanger.ac.uk Medical, Human Pathogen 496068 28301 003707_GCAT 364921 642979340 NZ_CAAV00000000 Draft 10.9x 454 4760 0 51 454-GS20 United Kingdom Case of typhoid fever in Bangladesh in 1998 1998 India Case of typhoid fever in Bangladesh in 1998 Homo sapiens Patient with typhoid fever Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Typhoid fever Host 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica E98-3139 E98-3139 Typhi Salmonella enterica subsp. enterica serovar Typhi str. E98-3139 Gi02976 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J parkhill@sanger.ac.uk Medical, Human Pathogen 496064 28309 003708_GCAT 364930 642979346 NZ_CAAZ00000000 Draft 11.1x FLX, 5.4x Solexa 4600 0 52 Solexa, 454-FLX USA Case of typhoid fever in Mexico in 1998 1998 Mexico Case of typhoid fever in Mexico in 1998 Homo sapiens Patient with typhoid fever Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Typhoid fever Host 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica J185 J185 Typhi Salmonella enterica subsp. enterica serovar Typhi str. J185 Gi02977 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J parkhill@sanger.ac.uk Medical, Human Pathogen 496067 28303 003709_GCAT 370187 642979339 NZ_CAAW00000000 Draft 13.5x 454 4743 0 52 454-GS20 United Kingdom Case of typhoid fever in Indonesia Indonesia Case of typhoid fever in Indonesia Homo sapiens Patient with typhoid fever Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Typhoid fever Host 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica M223 M223 Typhi Salmonella enterica subsp. enterica serovar Typhi str. M223 Gi02978 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J parkhill@sanger.ac.uk Medical, Human Pathogen 496066 28305 003710_GCAT 359026 642979348 NZ_CAAX00000000 Draft 11.1x 454 5029 0 52 454-FLX United Kingdom Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Typhoid fever Host 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica 150(98)S 150(98)S Typhi Gi02979 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J parkhill@sanger.ac.uk Medical, Human Pathogen 90370 003711_GCAT 20481 0 8.6x Solexa 0 0 0 Solexa United Kingdom Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs Typhoid fever Host 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica E02-2759 E02-2759 Typhi Gi02980 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J parkhill@sanger.ac.uk Medical, Human Pathogen 90370 003712_GCAT 20481 0 65.x Solexa 0 0 0 Solexa United Kingdom Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Typhoid fever Host 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica E03-4983 E03-4983 Typhi Gi02981 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J parkhill@sanger.ac.uk Medical, Human Pathogen 90370 003713_GCAT 20481 0 7.4x Solexa 0 0 0 Solexa United Kingdom Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Typhoid fever Host 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica E03-9804 E03-9804 Typhi Gi02982 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J parkhill@sanger.ac.uk Medical, Human Pathogen 90370 003714_GCAT 20481 0 8.2x Solexa 0 0 0 Solexa United Kingdom Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Typhoid fever Host 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica ISP-03-07467 ISP-03-07467 Typhi Gi02983 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J parkhill@sanger.ac.uk Medical, Human Pathogen 90370 003715_GCAT 20481 0 7.9x Solexa 0 0 0 Solexa United Kingdom Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Typhoid fever Host 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica ISP-04-06979 ISP-04-06979 Typhi Gi02984 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J parkhill@sanger.ac.uk Human Pathogen, Medical 90370 003716_GCAT 20481 0 72.9x Solexa 0 0 0 Solexa United Kingdom Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Typhoid fever Host 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica Ty2 Ty2 Typhi Gi02985 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J parkhill@sanger.ac.uk Human Pathogen, Medical 209261 003717_GCAT 148451 0 8.6x Solexa 0 0 0 Solexa United Kingdom Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Typhoid fever Host 37 Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae 459-2 459-2 Streptococcus pneumoniae 459-2 Gi02986 Genome incomplete Public Allegheny-Singer Research Institute Medical, Human Pathogen 497981 28523 003718_GCAT 0 0 0 0 USA Child in Lisbon, Portugal Portugal Child in Lisbon, Portugal 38.707163 -9.135517 Homo sapiens Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Human nasopharyngeal microflora, Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus enterica enterica 459-5 459-5 Streptococcus pneumoniae 459-5 Gi02987 Genome incomplete Public Allegheny-Singer Research Institute Medical, Human Pathogen 497980 28525 003719_GCAT 0 0 0 0 USA Child in Lisbon, Portugal Portugal Child in Lisbon, Portugal 38.707163 -9.135517 Homo sapiens Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Human nasopharyngeal microflora, Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Cellvibrio Cellvibrio japonicus BACTERIAL Cellvibrio japonicus Ueda107 Ueda107 Cellvibrio japonicus Ueda107 NCIMB 10462 Gc00821 Gi02988 Genome Complete and Published Public J. Craig Venter Institute CJA 2008-06-20 J. Bacteriology 190, 5455-63 Bioenergy, Biofuels, Biotechnological 498211 28329 003720_GCAT 350895 642555119 NC_010995 Complete 4576 3811 1 0 51 USA Field soil in Japan Japan Field soil in Japan Aerobe Rod-shaped Mesophile gram- Free living None Soil Motile Cellulose degrader, Biomass degrader Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum BoNT/A3 Loch Maree BoNT/A3 Loch Maree Clostridium botulinum A3 str. Loch Maree Gc00741 Gi02989 Genome Complete and Published Public Los Alamos National Laboratory, DOE Joint Genome Institute DOE, NIH-NIAD, DoD Smith T theresa.smith@amedd.army.mil CLK 2008-03-05 PLoS ONE 2, E1271 Medical, Human Pathogen 498214 28507 003721_GCAT 267358 641522617 NC_010520 Complete Phrap Critica, Glimmer 2.0 3992 4200 1 1 28.3 Sanger USA Duck liver paste during a botulism outbreak at a hotel in the Scottish highlands in 1922. 1922 UK Scottish highlands Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains, Pairs, Singles Botulism Soil, Host, Fresh water 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa OPPA8 OPPA8 Pseudomonas aeruginosa OPPA8 Gi02990 Genome incomplete Public West Penn Allegheny Health System Medical, Human Pathogen 497979 28527 003722_GCAT 0 0 0 0 USA tumor in the middle ear (cholesteatoma) tumor in the middle ear (cholesteatoma) Homo sapiens Patient with tumor in the middle ear Ear Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Host Motile Pathogen Heterotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces clavuligerus BACTERIAL Streptomyces clavuligerus ATCC 27064 ATCC 27064 Streptomyces clavuligerus ATCC 27064 NRRL 3585, MGI0006, ATCC 27064 Yes Gi02991 Genome incomplete Public KRIBB Biotechnological, Antibiotic production 443255 19249 003723_GCAT 0 20x GS20, 5x Sanger 9000 0 1 3 0 454-GS20, Sanger Korea Aerobe Filament-shaped Sporulating Mesophile gram+ Free living Filaments Salmonellosis Soil 25 - 35 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces sp. Mg1 BACTERIAL Streptomyces sp. Mg1 Mg1 Streptomyces sp. Mg1 Gi02992 Genome incomplete Public Broad Institute StMg1 465541 28547 003724_GCAT 312716 642791623 NZ_ABJF00000000 Draft 7105 6715 71 USA Aerobe Filament-shaped Sporulating Mesophile gram+ Free living Filaments None Soil Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces sp. SPB74 BACTERIAL Streptomyces sp. SPB74 SPB74 Streptomyces sp. SPB74 Gi02993 Genome incomplete Public Broad Institute SSPB7 465543 28549 003725_GCAT 324540 642791622 NZ_ABJG00000000 Draft 5064 4714 71 USA Aerobe Filament-shaped Sporulating Mesophile gram+ Free living Filaments None Soil Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces sviceus BACTERIAL Streptomyces sviceus ATCC 29083 ATCC 29083 Streptomyces sviceus ATCC 29083 ATCC 29083 Gi02994 Genome incomplete Public Broad Institute 463191 28555 003726_GCAT 323766 642979326 NZ_ABJJ00000000 Draft 8472 0 70 USA Soil Soil Aerobe Filament-shaped Sporulating Mesophile gram+ Free living Filaments None Soil Nonmotile unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Hot spring microbial communities from Yellowstone National Park Hot Springs from Yellowstone National Park Hot Springs Octopus/Mushroom Yellowstone National Park Octopus/Mushroom Hot Springs Metagenome Gm00125 Metagenome incomplete Public J. Craig Venter Institute 433727 20953 003727_GCAT 0 0 0 0 USA microbial mat core taken from two different hot springs in Yellowstone National Park USA microbial mat core taken from two different hot springs in Yellowstone National Park 44.376262 -110.690383 Hot spring, Fresh water MICROBIAL Marine microbial communities from the equatorial Atlantic and tropical South Pacific from the equatorial Atlantic and tropical South Pacific Pelagic Microbial Assemblages in the Oligotrophic Ocean Gm00126 Metagenome complete Public UCSD Hewson I hewson@ucsc.edu 408172 21117 003728_GCAT 0 Complete 315 0 0 USA surface waters of several open ocean locations in the equatorial Atlantic and tropical South Pacific surface waters of several open ocean locations in the equatorial Atlantic and tropical South Pacific unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine Bacterioplankton communities from Sapelo Island from Sapelo Island Sapelo Island Bacterioplankton Metagenome Gm00127 Metagenome incomplete Public Univ of Georgia Mou X xiaozhen@uga.edu Environmental 408172 19145 SRA000235 003729_GCAT 0 Genbank Complete 0 0 0 454 USA coastal bacterioplankton community from SIMO Dean Creek sampling site on Sapelo Island, Georgia (81.26990W, 31.39290N) in November 2005 November 2005 USA Sapelo Island, Georgia 31.39290 -81.26990 surface water None Marine, Coastal Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus casei BACTERIAL Lactobacillus casei Zhang Zhang Lactobacillus casei str. Zhang Gi02995 Genome incomplete Public Beijing Institute of Genomics Biotechnological, Food industry 498216 28537 003730_GCAT 219489 0 0 0 0 China "home-made koumiss (fermented mare's milk) in Inner Mongolia, China" China home-made koumiss (fermented mare's milk) in Inner Mongolia, China Facultative Rod-shaped Mesophile gram+ Free living Chains None Host 30 - 40 Nonmotile Probiotic Bacteria Chloroflexi Chloroflexi (class) Chloroflexales Chloroflexaceae BACTERIAL Chloroflexus sp. Y-396-1 Y-396-1 Gi02996 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 1107 003731_GCAT 0 0 0 0 USA Filament-shaped Mesophile Free living Filaments None Motile Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobulbaceae Desulfurivibrio Desulfurivibrio alkaliphilus BACTERIAL Desulfurivibrio alkaliphilus AHT2 AHT2 Desulfurivibrio alkaliphilus AHT2 DSM 19089 Yes Gi02998 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 589865 33629 003733_GCAT 0 NZ_ACYL00000000 Draft 6100 2688 0 USA Sediments from a highly alkaline saline soda lake in Egypt Egypt Wadi Natrun, Egypt 30.418502 30.333323 Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Motile Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfohalobiaceae Desulfonatronospira Desulfonatronospira thiodismutans BACTERIAL Desulfonatronospira thiodismutans ASO3-1 ASO3-1 Desulfonatronospira thiodismutans ASO3-1 DSM 19093, UNIQEM U234 Yes Gi02999 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 555779 31051 003734_GCAT 643886196 NZ_ACJN00000000 Draft 53 3971 3790 51 USA "sediment from a highly alkaline saline soda lake on the Kulunda Steppe, Altai, Russia" Russia sediment from a highly alkaline saline soda lake on the Kulunda Steppe, Altai, Russia 52.504582 82.999935 Anaerobe Rod-shaped Nonsporulating Mesophile Halophile gram- Free living Singles None Soda lakes, Sediment Motile Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium BACTERIAL Clostridium difficile VPI 10463, ATCC 43255 VPI 10463, ATCC 43255 Clostridium difficile ATCC 43255 ATCC 43255 Gi03000 Genome incomplete Public McGill Univ Dewar K ken.dewar@mcgill.ca CdifA Human Pathogen, Medical 1496 28559 003735_GCAT 14216 642791605 NZ_ABKJ00000000 Draft 28x 4194 3977 28 454-FLX Canada Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Diarrhea Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPKX_438_CA4C1 HPKX_438_CA4C1 Helicobacter pylori HPKX_438_CA4C1 Gi03001 Genome incomplete Public Washington Univ Human Pathogen, Medical 499172 28545 003736_GCAT 325881 642979332 NZ_ABJP00000000 Draft 15x 1566 0 0 USA Patient with H. pylori-associated gastric carcinoma Patient with H. pylori-associated gastric carcinoma Homo sapiens Patient with H. pylori-associated gastric carcinoma Gastrointestinal tract Stomach Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Human stomach, Host 37 Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPKX_438_AG0C1 HPKX_438_AG0C1 Helicobacter pylori HPKX_438_AG0C1 Gi03002 Genome incomplete Public Washington Univ Medical, Human Pathogen 499171 28543 003737_GCAT 312651 642979325 NZ_ABJO00000000 Draft 25x 1819 0 39 USA Patient with H. pylori-associated atrophic gastritis which later progressed to gastric carcinoma Patient with H. pylori-associated atrophic gastritis which later progressed to gastric carcinoma Homo sapiens Patient with H. pylori-associated atrophic gastritis Gastrointestinal tract Stomach Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Human stomach, Host 37 Motile Pathogen Eukaryota Ascomycota Sordariomycetes Phyllachorales Verticillium Verticillium dahliae EUKARYAL Verticillium dahliae VdLs.17 VdLs.17 Verticillium dahliae VdLs.17 Gi03003 Genome incomplete Public Broad Institute Plant Pathogen, Agricultural 498257 28529 003738_GCAT 0 7.4x 28400 0 7 0 USA Lettuce isolate Lettuce isolate Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi 64b 64b Borrelia burgdorferi 64b Gi03004 Genome incomplete Public J. Craig Venter Institute Bbur6 Medical 498740 28633 003739_GCAT 331312 642791611 NZ_ABKA00000000 Draft 8x 1652 1980 28 USA Human skin Human skin Homo sapiens Skin Microaerophilic Spiral-shaped Mesophile gram- Free living Lyme disease Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia sp. SV1 BACTERIAL Borrelia sp. SV1 SV1 Borrelia sp. SV1 Gi03005 Genome incomplete Public J. Craig Venter Institute Fraser-Liggett C cmfraser@som.umaryland.edu http://medschool.umaryland.edu/FACULTYRESEARCHPROFILE/viewprofile.aspx?id=20004 BoSV1 Medical 498741 28631 003740_GCAT 350167 642791624 NZ_ABJZ00000000 Draft 8x 1274 1311 28 USA tick Ixodes ricinus in France France tick Ixodes ricinus in France Microaerophilic Spiral-shaped Mesophile gram- Free living Ixodes ricinus Lyme disease Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia spielmanii BACTERIAL Borrelia spielmanii A14S A14S Borrelia spielmanii A14S Gi03006 Genome incomplete Public J. Craig Venter Institute Fraser-Liggett C cmfraser@som.umaryland.edu http://medschool.umaryland.edu/FACULTYRESEARCHPROFILE/viewprofile.aspx?id=20004 BspiA Human Pathogen, Medical 498742 28635 003741_GCAT 303807 642791612 NZ_ABKB00000000 Draft 8x 1260 1284 27 USA Person with erythema migrans France, Germany, The Netherlands, and the Czech Republic Homo sapiens Patient with erythema migrans Microaerophilic Spiral-shaped Mesophile gram- Free living Lyme disease Host Motile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydophila BACTERIAL Chlamydophila psittaci Mat116 Mat116 Chlamydophila psittaci Mat116 Gi03007 Genome incomplete Public Gifu Univ Human Pathogen, Medical 83554 28637 003742_GCAT 2981 0 0 0 0 Japan outbreak of psittacosis in Japan in 2001 2001 Japan outbreak of psittacosis in Japan in 2001 Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Psittacosis Host Nonmotile Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum BoNT/B1 Okra BoNT/B1 Okra Clostridium botulinum B1 str. Okra Gc00740 Gi03008 Genome Complete and Published Public Los Alamos National Laboratory, DOE Joint Genome Institute DOE, NIH-NIAD, DoD Smith T theresa.smith@amedd.army.mil CLD 2008-02-28 PLoS ONE 2, E1271 Human Pathogen, Medical 498213 28505 003743_GCAT 262373 641522619 NC_010516 Complete Phrap Critica, Glimmer 2.0 3958 4070 1 2 28.3 Sanger USA Foodborne botulism incident in the US USA Foodborne botulism incident in the US Homo sapiens Patient with Foodborne botulism Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains, Pairs, Singles Botulism 37 Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium difficile BACTERIAL Clostridium difficile QCD-23m63 QCD-23m63 Clostridium difficile QCD-23m63 Gi03009 Genome incomplete Public McGill Univ Dewar K ken.dewar@mcgill.ca CdifQCD-2 Medical, Human Pathogen 499174 28557 003744_GCAT 321100 642791631 NZ_ABKL00000000 Draft 28x 3915 3614 28 454-FLX Canada "Quebec, Montreal from a patient with severe Clostridium Difficile Associated Disease" Canada Quebec, Montreal Homo sapiens Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains, Pairs, Singles Colitis, Diarrhea Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium difficile BACTERIAL Clostridium difficile CIP 107932 CIP 107932 Clostridium difficile CIP 107932 Gi03010 Genome incomplete Public McGill Univ Dewar K ken.dewar@mcgill.ca CdifC Human Pathogen, Medical 499176 28561 003745_GCAT 349804 642791606 NZ_ABKK00000000 Draft 28x 4009 3688 28 454-FLX Canada case of pseudomembraneous colitis in Marne, France France Marne, France 49.128754 4.147545 Homo sapiens Patient with pseudomembraneous colitis Urogenital tract Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains, Pairs, Singles Colitis, Diarrhea Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli F18+ F18+ Escherichia coli F18+ Gi03011 Genome incomplete Public Goettingen Genomics Laboratory Human Pathogen, Medical 488477 28061 003746_GCAT 0 0 0 0 Germany Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea Host Motile Pathogen, Enterotoxigenic Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces pristinaespiralis BACTERIAL Streptomyces pristinaespiralis ATCC 25486 ATCC 25486 Streptomyces pristinaespiralis ATCC 25486 ATCC 25486 No Gi03012 Genome incomplete Public Broad Institute Antibiotic production, Biotechnological 457429 28553 003747_GCAT 354490 642979327 NZ_ABJI00000000 Draft 6152 0 70 USA Aerobe Filament-shaped Sporulating Mesophile gram- Free living Filaments None Soil Nonmotile Pristinamycin producer Bacteria Candidatus Cloacamonas BACTERIAL Candidatus Cloacamonas acidaminovorans Candidatus Cloacamonas acidaminovorans Gc00715 Metagenome Complete and Published Public Genoscope European Union Le Paslier D denis@genoscope.cns.fr 2008-02-12 J. Bacteriology 190, 2572-2579 Biotechnological, Wastewater treatment 456827 28717 003748_GCAT 0 CU466930 Complete 10.9x AMIGene 2246 1820 1 0 37.9 France Sludge sample from anaerobic mesophilic digester (7000m3) at the Evry wastewater treatment plant, 35Km south of Paris, France France 35Km south of Paris, France 48.616667 2.464817 Anaerobe Mesophile 7.2 Free living None Wastewater treatment plant, Sludge 33 Aminoacids fermentor, Sugars fermentor Syntrophic Eukaryota Chordata Actinopterygii Perciformes Cichlidae Maylandia EUKARYAL Maylandia zebra zebra mbuna Gi03072 Genome-Survey incomplete Public DOE Joint Genome Institute DOE Kocher TD 106582 003822_GCAT 0 Draft 0 0 0 USA Eukaryota Chordata Mammalia Rodentia Cricetidae Peromyscus EUKARYAL Peromyscus polionotus California mouse Gi03079 Genome targeted Public NIH-NHGRI 42413 003829_GCAT 0 2x 0 0 0 USA Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae CGSP14 CGSP14 Streptococcus pneumoniae CGSP14 Gc00765 Genome Complete and Published Public Beijing Institute of Genomics Chiu CH chchiu@adm.cgmh.org.tw SPCG 2008-04-11 Unpublished Medical, Human Pathogen 516950 29179 003837_GCAT 260561 641522651 NC_010582 Complete 2209 2346 1 0 39.5 USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis holarctica OR96-0463 OR96-0463 Francisella tularensis subsp. holartica OR96-0463 Gi03086 Genome incomplete Public Los Alamos National Laboratory, DOE Joint Genome Institute Brettin T brettin@lanl.gov Animal Pathogen, Medical, Human Pathogen, Biothreat 517535 003838_GCAT 0 0 0 32 Sanger USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Tularemia Host, Fresh water Nonmotile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Anaplasmataceae Anaplasma Anaplasma marginale BACTERIAL Anaplasma marginale Virginia Virginia Anaplasma marginale str. Virginia Gi03088 Genome incomplete Public Washington State Univ Palmer GH gpalmer@vetmed.wsu.edu Animal Pathogen, Medical, Human Pathogen, Cattle Pathogen 403779 29209 003840_GCAT 28040 0 NZ_ABOR00000000 Draft 70 1153 0 49.8 USA Aerobe Coccus-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Singles Anaplasmosis, Bovine anaplasmosis Host Pathogen Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Anaplasmataceae Anaplasma Anaplasma marginale BACTERIAL Anaplasma marginale Puerto Rico Puerto Rico Anaplasma marginale str. Puerto Rico Gi03090 Genome incomplete Public Washington State Univ Palmer GH gpalmer@vetmed.wsu.edu Animal Pathogen, Medical, Human Pathogen, Cattle Pathogen 517437 29207 003841_GCAT 0 NZ_ABOQ00000000 Draft 1158 0 49 USA cattle in Puerto Rico in 1985 1985 Puerto Rico Aerobe Coccus-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Singles Anaplasmosis, Bovine anaplasmosis Host Pathogen Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Anaplasmataceae Anaplasma Anaplasma marginale BACTERIAL Anaplasma marginale Mississippi Mississippi Anaplasma marginale str. Mississippi Gi03091 Genome incomplete Public Washington State Univ Palmer GH gpalmer@vetmed.wsu.edu Animal Pathogen, Medical, Human Pathogen, Cattle Pathogen 517436 29205 003842_GCAT 0 NZ_ABOP00000000 Draft 1100 0 49.8 454 USA cattle with an acute clinical case of anaplasmosis Cow Aerobe Coccus-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Singles Anaplasmosis, Bovine anaplasmosis Host Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Providencia Providencia alcalifaciens BACTERIAL Providencia alcalifaciens DSM 30120 DSM 30120 019:H2 Providencia alcalifaciens DSM 30120 ATCC 9886, DSM 30120, CIP 82.90, NCTC 10286 Yes Gi03092 Genome incomplete Public Washington Univ NIH-NHGRI Weinstock G gweinsto@watson.wustl.edu http://www.genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 520999 29297 003843_GCAT 699 370222 642979317 NZ_ABXW00000000, ABXW00000000 Complete Newbler 2.0.00.20 28.8X GeneMark v3.3, Glimmer2 v2.134089 79 4029 4089 41 454-FLX USA Human feces DSM 30120 Human feces Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Gastroenteritis Host, Human intestinal microflora Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Providencia Providencia rettgeri BACTERIAL Providencia rettgeri DSM 1131 DSM 1131 Providencia rettgeri DSM 1131 NCTC 7481, DSM 1131 No Gi03093 Genome incomplete Public Washington Univ NIH-NHGRI Gordon J jgordon@wustl.edu http://www.genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 521000 29299 003844_GCAT 700 643886041 ACCI00000000, NZ_ACCI00000000 Draft Newbler 2.0.00.20 17.2X GeneMark v3.3, Glimmer2 v2.13 283 4657 4791 40 454-FLX USA Human feces DSM 1131 Human feces Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Gastroenteritis Host, Human intestinal microflora Motile Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae 6P18H1 6P18H1 Haemophilus influenzae 6P18H1 Gi03096 Genome incomplete Public Allegheny-Singer Research Institute Medical, Human Pathogen 521004 29317 003845_GCAT 0 NZ_ABWW00000000 Draft 28 181219 61 37.9 USA Adult with chronic obstructive pulmonary disease (COPD) Adult with chronic obstructive pulmonary disease (COPD) Homo sapiens Adult Patient with chronic obstructive pulmonary disease Airways Facultative Rod-shaped Mesophile gram- Free living Sinusitis, Septicemia, Chronic bronchitis, Meningitis, Otitis media Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi 7P49H1 7P49H1 Haemophilus influenzae 7P49H1 Gi03097 Genome incomplete Public Allegheny-Singer Research Institute Medical, Human Pathogen 521005 29319 003846_GCAT 0 NZ_ABWV00000000 Draft 19 1827 1818 37.9 USA Adult with chronic obstructive pulmonary disease (COPD) Adult with chronic obstructive pulmonary disease (COPD) Homo sapiens Adult Patient with chronic obstructive pulmonary disease Airways Facultative Rod-shaped Mesophile gram- Free living Sinusitis, Septicemia, Chronic bronchitis, Meningitis, Otitis media Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi 22.1-24 22.1-24 Haemophilus influenzae 22.1-24 Gi03098 Genome incomplete Public Allegheny-Singer Research Institute Medical, Human Pathogen 520729 29373 003847_GCAT 0 0 0 0 454 USA Nasopharynx of a healthy child Nasopharynx of a healthy child Homo sapiens Child Healthy Airways Nasopharynx Facultative Rod-shaped Mesophile gram- Free living Sinusitis, Septicemia, Chronic bronchitis, Meningitis, Otitis media Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi R1838 R1838 Haemophilus influenzae R1838 Gi03099 Genome incomplete Public Allegheny-Singer Research Institute Human Pathogen, Medical 520727 29377 003848_GCAT 0 0 0 0 454 USA clinical blood culture isolate recovered from a patient in Papua New Guinea New Guinea clinical blood culture isolate recovered from a patient in Papua New Guinea -6.314993 143.95555 Homo sapiens Patient Blood Facultative Rod-shaped Mesophile gram- Free living Sinusitis, Septicemia, Chronic bronchitis, Meningitis, Otitis media Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi NML-20 NML-20 Haemophilus influenzae NML-20 Gi03100 Genome incomplete Public Allegheny-Singer Research Institute Medical, Human Pathogen 520726 29375 003849_GCAT 0 0 0 0 454 USA clinical blood culture isolate (biotype III) recovered from a patient in Winnipeg, Canada Canada clinical blood culture isolate (biotype III) recovered from a patient in Winnipeg, Canada 49.895452 -97.138273 Homo sapiens Patient Blood Facultative Rod-shaped Mesophile gram- Free living Sinusitis, Septicemia, Chronic bronchitis, Meningitis, Otitis media Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi R393 R393 Haemophilus influenzae R393 Gi03101 Genome incomplete Public Allegheny-Singer Research Institute Medical, Human Pathogen 520728 29379 003850_GCAT 0 0 0 0 454 USA clinical sputum culture isolate from a patient in Malaysia Malaysia clinical sputum culture isolate from a patient in Malaysia Homo sapiens Patient Airways Facultative Rod-shaped Mesophile gram- Free living Sinusitis, Septicemia, Chronic bronchitis, Meningitis, Otitis media Host Nonmotile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi DN127 DN127 Borrelia burgdorferi DN127 Gi03102 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Fraser-Liggett C cmfraser@som.umaryland.edu http://medschool.umaryland.edu/FACULTYRESEARCHPROFILE/viewprofile.aspx?id=20004 Medical, Human Pathogen 521010 29363 003851_GCAT 641736265 0 0 0 USA "western blackleg tick, Ixodes pacificus, in California" USA California Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Ixodes pacificus Lyme disease Host, Human skin Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi 297 297 Borrelia burgdorferi 297 Gi03122 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Fraser-Liggett C cmfraser@som.umaryland.edu http://medschool.umaryland.edu/FACULTYRESEARCHPROFILE/viewprofile.aspx?id=20004 Medical, Human Pathogen 521009 29361 003874_GCAT 4265 0 0 0 0 USA Human cerebrospinal fluid Human cerebrospinal fluid Homo sapiens Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Lyme disease Host, Human skin Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae BACTERIAL Neisseria gonorrhoeae NCCP11945 NCCP11945 Neisseria gonorrhoeae NCCP11945 Gc00830 Gi03103 Genome Complete and Published Public Genotech corp. Yoo CK ckyoo@nih.go.kr NGK 2008-07-09 J. Bacteriology 190, 6035-6 Medical, Human Pathogen 521006 29335 003852_GCAT 312804 642555143 NC_011035 Complete 2232 2741 1 1 52 Korea Vaginal smear of a Korean patient Korea Vaginal smear of a Korean patient Homo sapiens Female Patient Urogenital tract Vaginal secretions Vaginal Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Gonorrhea Host 35 - 37 Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium amycolatum DSM 6922 DSM 6922 DSM 6922, ATCC 49368, NCFB 2768 Yes Gi03104 Genome incomplete Public IGS, Bielefeld Univ Bielefeld Univ Tauch, A Andreas.Tauch@genetik.uni-bielefeld.de http://www.cebitec.uni-bielefeld.de/~tauch Medical 43765 003853_GCAT 13352 0 0 0 0 Germany Human skin Human skin Homo sapiens Patient Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host, Skin microflora 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium atypicum DSM 44849 DSM 44849 CIP 107431, JCM 12368, DSM 44849, CCUG 45804 Yes Gi03105 Genome incomplete Public IGS, Bielefeld Univ Bielefeld Univ Tauch, A Andreas.Tauch@genetik.uni-bielefeld.de http://www.cebitec.uni-bielefeld.de/~tauch Medical 191610 003854_GCAT 90728 0 0 0 0 Germany Human clinical specimen Human clinical specimen Homo sapiens Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium coyleae DSM 44184 DSM 44184 CCUG 35014, DSM 44184 Yes Gi03106 Genome incomplete Public IGS, Bielefeld Univ Bielefeld Univ Tauch, A Andreas.Tauch@genetik.uni-bielefeld.de http://www.cebitec.uni-bielefeld.de/~tauch Medical 53374 003855_GCAT 73330 0 0 0 0 Germany Human blood culture Human blood culture Homo sapiens Blood Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host, Blood 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium resistens BACTERIAL Corynebacterium resistens DSM 45100 DSM 45100 DSM 45100, CCUG 50093, JCM 12819 Yes Gi03107 Genome incomplete Public IGS, Bielefeld Univ Bielefeld Univ Tauch, A Andreas.Tauch@genetik.uni-bielefeld.de http://www.cebitec.uni-bielefeld.de/~tauch Medical 662755 39683 003856_GCAT 109529 0 In progress 0 0 0 Germany Human blood, myelocytic leukemia Human blood, myelocytic leukemia Homo sapiens Patient with myelocytic leukemia Blood Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host, Blood 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Thermotogae Thermotogae (class) Thermotogales Thermotogaceae Kosmotoga Kosmotoga olearia BACTERIAL Kosmotoga olearia TBF 19.5.1 TBF 19.5.1 Kosmotoga olearia TBF 19.5.1 Gc01029 Gi03108 Genome Complete and Published Public DOE Joint Genome Institute DOE Noll K kenneth.noll@uconn.edu Kole 2009-06-12 Unpublished Biotechnological 521045 29419 003857_GCAT 359964 642979307 NC_012785 Complete Level 6: Finished 2302 2224 1 0 41 USA oil deposit Rod-shaped gram- Free living None Fresh water Motile Eukaryota Arthropoda Insecta Hemiptera Psyllidae Diaphorina EUKARYAL Diaphorina citri Asian citrus psyllid Diaphorina citri Gi03109 Genome incomplete Public International Psyllid Genome Consortium USDA Agricultural 121845 29447 003858_GCAT 0 0 0 0 USA Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus paracasei BACTERIAL Lactobacillus paracasei paracasei F19 F19 Lactobacillus paracasei subsp. paracasei Gi03110 Genome incomplete Proprietary Arlafoods, Integrated Genomics Inc Hakansson J janet.hakansson@arlafoods.com Food industry, Biotechnological 47714 003860_GCAT 320383 0 0 0 0 USA Facultative Rod-shaped Mesophile gram+ Free living Chains None Host 30 - 40 Nonmotile Probiotic MICROBIAL Marine viral communities from Tampa Bay from Tampa Bay induced with mitomycin C Tampa Bay Induced Viral Metagenome Gm00137 Metagenome complete Public SDSU Dinsdale EA elizabeth_dinsdale@hotmail.com 2008-03-12 Nature 452, 629-32 408172 28619 003861_GCAT 0 Complete 0 0 0 USA Tampa Bay, CA USA Tampa Bay, CA Marine Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli LW1655F+ LW1655F+ Escherichia coli LW1655F+ Gi03111 Genome incomplete Public Leibniz Institute Medical 527799 29609 003862_GCAT 158317 0 0 0 0 Germany K-12 cell wall less deficient mutant K-12 cell wall less deficient mutant Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host 37 Motile Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia garinii BACTERIAL Borrelia garinii Far04 Far04 Borrelia garinii Far04 Gi03113 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Fraser-Liggett C cmfraser@som.umaryland.edu http://medschool.umaryland.edu/FACULTYRESEARCHPROFILE/viewprofile.aspx?id=20004 Medical, Human Pathogen 519049 29573 003864_GCAT 365945 642979365 NZ_ABPZ00000000 Draft 12x 1100 0 28 Sanger USA Puffin (Fratercula arctica) blood from the Faeroe Islands Faeroe Islands Faeroe Islands Homo sapiens Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Lyme disease Host Motile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Rhizobium Rhizobium etli BACTERIAL Rhizobium etli CIAT 894 CIAT 894 Rhizobium etli CIAT 894 Gi03114 Genome incomplete Public UNAM Gonzalez V vgonzal@cifn.unam.mx Biotechnological, Agricultural 526945 29565 003865_GCAT 642979300 NZ_ABRD00000000 Draft 1x 3687 0 60 Mexico Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Mutualistic Singles None Host, Root nodule Motile Nitrogen fixation Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Rhizobium Rhizobium etli BACTERIAL Rhizobium etli GR56 GR56 Rhizobium etli GR56 Gi03115 Genome incomplete Public UNAM Gonzalez V vgonzal@cifn.unam.mx Biotechnological, Agricultural 526947 29561 003866_GCAT 642979302 NZ_ABRB00000000 Draft 1x 4164 0 61 Mexico Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Mutualistic Singles None Host, Root nodule Motile Nitrogen fixation Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Rhizobium Rhizobium etli BACTERIAL Rhizobium etli IE4771 IE4771 Rhizobium etli IE4771 Gi03116 Genome incomplete Public UNAM Gonzalez V vgonzal@cifn.unam.mx Biotechnological, Agricultural 526946 29563 003867_GCAT 642979301 NZ_ABRC00000000 Draft 1x 3989 0 60 Mexico Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Mutualistic Singles None Host, Root nodule Motile Nitrogen fixation Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Rhizobium Rhizobium etli BACTERIAL Rhizobium etli Kim 5 Kim 5 Rhizobium etli Kim 5 Gi03117 Genome incomplete Public UNAM Gonzalez V vgonzal@cifn.unam.mx Biotechnological, Agricultural 526950 29555 003868_GCAT 642979353 , NZ_ABQY00000000 Draft 1x 4140 0 61 Mexico Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Mutualistic Singles None Host, Root nodule Motile Nitrogen fixation Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Rhizobium BACTERIAL Rhizobium etli S20 S20 Gi03118 Genome incomplete Public UNAM Gonzalez V vgonzal@cifn.unam.mx Biotechnological, Agricultural 29449 003869_GCAT 80573 0 0 0 0 Mexico Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Mutualistic Singles None Host, Root nodule Motile Nitrogen fixation Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Rhizobium Rhizobium etli BACTERIAL Rhizobium etli Brasil 5 Brasil 5 Rhizobium etli Brasil 5 Gi03119 Genome incomplete Public UNAM Gonzalez V vgonzal@cifn.unam.mx Agricultural, Biotechnological 526949 29557 003870_GCAT 642979352 NZ_ABQZ00000000 Draft 1x 3425 0 61 Mexico Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Mutualistic Singles None Host, Root nodule Motile Nitrogen fixation Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio salexigens BACTERIAL Desulfovibrio salexigens DSM 2638 DSM 2638 Desulfovibrio salexigens DSM 2638 ATCC 14822, DSM 2638 Yes Gc01109 Gi03120 Genome Complete and Published Public DOE Joint Genome Institute DOE Hazen TC TCHazen@lbl.gov Desal 2009-06-26 Unpublished Bioremediation, Environmental, Biotechnological 526222 29541 003871_GCAT 642979335 NC_012881 Complete Level 6: Finished Prodigal, GenePRIMP 4289 3941 1 0 47 USA mud in British Guyana mud in British Guyana Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Mud 37 Motile Sulfate reducer unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Wastewater treatment plant microbial communities of a North Carolina aerobic basin of a North Carolina aerobic basin Wastewater Metagenome MallardCreek032007AerobicBasin Gm00138 Metagenome incomplete Public Univ North Carolina Charlote Environmental, Biotechnological 527639 29421 003872_GCAT 0 0 0 0 454-FLX USA Activated sludge from the aerobic basin of a North Carolina Wastewater Treatment Plant in Charlotte, NC March 20 2007 USA Charlotte, NC 35.231402 -80.845841 Aerobe None Fresh water, Wastewater treatment plant, Sludge Bacteria Firmicutes Clostridia Clostridiales Anaerocellum Anaerocellum thermophilum BACTERIAL Anaerocellum thermophilum Z-1320, DSM 6725 Z-1320, DSM 6725 Anaerocellum thermophilum DSM 6725 DSM 6725 Yes Gc00954 Gi03121 Genome Complete and Published Public DOE Joint Genome Institute DOE Adams M adams@bmb.uga.edu Athe 2009-02-04 J. Bacteriology 191, 3760-1 Biotechnological 521460 29407 003873_GCAT 367376 643692002 NC_012034 Complete Level 6: Finished 8Kb 41706 Phred/Phrap/Consed 13.4x 2919 2662 1 2 35 Sanger, 454 USA Hot spring on the Kamchatka peninsula in Russia Russia Hot spring on the Kamchatka peninsula in Russia Obligate anaerobe Thermophile 3 - 4 gram+ Free living None Fresh water, Hot spring 75 Thermoacidophile, Cellulose degrader Archaea Crenarchaeota Thermoprotei Desulfurococcales Desulfurococcaceae Desulfurococcus Desulfurococcus kamchatkensis ARCHAEAL Desulfurococcus kamchatkensis 1221n 1221n Desulfurococcus kamchatkensis 1221n DSM 18924, VKM B-2413 Yes Gc00873 Gi03124 Genome Complete and Published Public Center of Bioengineering, INMI-RAS Bonch-Osmolovskaya EA elizaveta.bo@gmail.com 2008-12-24 J. Bacteriology 191, 2371-9 Biotechnological 490899 28141 003876_GCAT 237710 643348540 NC_011766 Complete 1.2-3Kb 1365 1471 1 0 45 Russia "Sediments of Treshchinny Spring (Uzon Caldera, Kamchatka, Russia)" Russia Kamchatka, Russia 54.593 160.273 Obligate anaerobe Coccus-shaped Hyperthermophile 5.5 - 7.5 1um gram- Free living None Hot spring, Fresh water, Sediment 85 Nonmotile Organotroph Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma crocodyli BACTERIAL Mycoplasma crocodyli MP145 MP145 Mycoplasma crocodyli MP145 ATCC 51981 Yes Gi03125 Genome incomplete Public J. Craig Venter Institute Medical, Animal Pathogen 512564 29021 003877_GCAT 0 0 0 0 USA joint of a crocodile with exudative polyarthritis joint of a crocodile with exudative polyarthritis Crocodile Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Arthritis Host 37 Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica ATCC BAA-1577 ATCC BAA-1577 ATCC BAA-1577 Gi03128 Genome incomplete Public Washington Univ NIH-NIAID Animal Pathogen, Reptile Pathogen, Medical, Human Pathogen 523833 28771 003880_GCAT 0 0 0 0 USA Homo sapiens Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Food poisoning, Salmonellosis Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica diarizonae ATCC BAA-1579 ATCC BAA-1579 Salmonella enterica subsp. diarizonae str. ATCC BAA-1579 ATCC BAA-1579 Gi03129 Genome incomplete Public Washington Univ NIH-NIAID Human Pathogen, Medical, Reptile Pathogen, Animal Pathogen 523839 28783 003881_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Food poisoning, Salmonellosis Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica ATCC BAA-1586 ATCC BAA-1586 Miami Salmonella enterica subsp. enterica serovar Miami str. ATCC BAA-1586 ATCC BAA-1586 Gi03130 Genome incomplete Public Washington Univ NIH-NIAID Animal Pathogen, Reptile Pathogen, Medical, Human Pathogen 523836 28775 003882_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Food poisoning, Salmonellosis Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica ATCC BAA-1575 ATCC BAA-1575 Muenster Salmonella enterica subsp. enterica serovar Muenster str. ATCC BAA-1575 ATCC BAA-1575 Gi03131 Genome incomplete Public Washington Univ NIH-NIAID Animal Pathogen, Reptile Pathogen, Medical, Human Pathogen 523828 28787 003883_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Food poisoning, Salmonellosis Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica ATCC BAA-1585 ATCC BAA-1585 Paratyphi B Salmonella enterica subsp. enterica serovar Paratyphi B str. ATCC BAA-1585 ATCC BAA-1585 Gi03132 Genome incomplete Public Washington Univ NIH-NIAID Animal Pathogen, Reptile Pathogen, Medical, Human Pathogen 523829 28765 003884_GCAT 0 0 0 0 USA Human in Africa in 1981 1981 Human in Africa in 1981 Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Food poisoning, Salmonellosis Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica houtenae ATCC BAA-1580 ATCC BAA-1580 Salmonella enterica subsp. houtenae str. ATCC BAA-1580 ATCC BAA-1580 Gi03133 Genome incomplete Public Washington Univ NIH-NIAID Animal Pathogen, Reptile Pathogen, Medical, Human Pathogen 523832 28769 003885_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Food poisoning, Salmonellosis Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica houtenae ATCC BAA-1581 ATCC BAA-1581 Salmonella enterica subsp. houtenae str. ATCC BAA-1581 ATCC BAA-1581 Gi03134 Genome incomplete Public Washington Univ NIH-NIAID Animal Pathogen, Reptile Pathogen, Medical, Human Pathogen 523831 28767 003886_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Food poisoning, Salmonellosis Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica indica ATCC BAA-1576 ATCC BAA-1576 Salmonella enterica subsp. indica str. ATCC BAA-1576 ATCC BAA-1576 Gi03135 Genome incomplete Public Washington Univ NIH-NIAID Animal Pathogen, Reptile Pathogen, Medical, Human Pathogen 523835 28785 003887_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Food poisoning, Salmonellosis Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica indica ATCC BAA-1578 ATCC BAA-1578 ATCC BAA-1578 Gi03136 Genome incomplete Public Washington Univ NIH-NIAID Animal Pathogen, Reptile Pathogen, Medical, Human Pathogen 523834 28773 003888_GCAT 0 0 0 0 USA India Homo sapiens Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs Food poisoning, Salmonellosis Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica salamae ATCC BAA-1583 ATCC BAA-1583 Salmonella enterica subsp. salamae str. ATCC BAA-1583 ATCC BAA-1583 Gi03137 Genome incomplete Public Washington Univ NIH-NIAID Animal Pathogen, Reptile Pathogen, Medical, Human Pathogen 523837 28779 003889_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Food poisoning, Salmonellosis Host Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae G54 (MLST ST63) G54 (MLST ST63) 19F Streptococcus pneumoniae G54 Gc00837 Gi03138 Genome Complete and Published Public J. Craig Venter Institute JCVI http://www.jcvi.org/cms/contact/locations/ SPG 2008-07-24 Unpublished Medical, Human Pathogen 512566 29047 003890_GCAT 318252 642555164 NC_011072 Complete 2078 2185 1 0 39.6 USA Genova Italy by G. Schito from a respiratory sample in 1997 1997 Italy Genova Italy by G. Schito from a respiratory sample in 1997 44.407062 8.933989 Homo sapiens Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Host, Human nasopharyngeal microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae SP9v-BS293 SP9v-BS293 Streptococcus pneumoniae SP9v-BS293 Gi03139 Genome incomplete Public West Penn Allegheny Health System Medical, Human Pathogen 497963 28513 003891_GCAT 640963054 In progress 2100 2429 39.6 USA Low-passage isolate from the nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh USA Low-passage isolate from the nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh Homo sapiens Child Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Host, Nasopharyngeal microflora Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces clavuligerus BACTERIAL Streptomyces clavuligerus ATCC 27064 ATCC 27064 Streptomyces clavuligerus ATCC 27064 NRRL 3585, ATCC 27064 Yes Gi03336 Genome incomplete Public Broad Institute Biotechnological, Antibiotic production 443255 28551 004104_GCAT 642979328 NZ_ABJH00000000 Draft 6729 0 1 3 71 454-GS20, Sanger USA Aerobe Filament-shaped Sporulating Mesophile gram+ Free living Filaments Salmonellosis Soil 25 - 35 Nonmotile Eukaryota Ascomycota Sordariomycetes Hypocreales Nectriaceae Gibberella Gibberella zeae EUKARYAL Gibberella zeae GZ3639 GZ3639 Gibberella zeae GZ3639 Gi03140 Genome incomplete Public Syngenta Agricultural, Plant Pathogen, Fungal Genome Initiative (FGI) 449239 19849 003892_GCAT 0 0.4x 46000 0 12 0 0 Sanger USA Ear rot, Kernel Pathogen, Fumonisin producer Eukaryota Nematoda Chromadorea Tylenchida Heteroderidae Heterodera EUKARYAL Heterodera glycines OP25 OP25 soybean cyst nematode Heterodera glycines OP25 Gi03335 Genome incomplete Public Monsanto Agricultural 51029 28939 004103_GCAT 0 ABLA01000000 Draft 3x 0 0 0 USA None Eukaryota Apicomplexa Coccidia Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii EUKARYAL Toxoplasma gondii ME49 ME49 Toxoplasma gondii ME49 Gc01076 Gi03142 Genome Complete and Published Public J. Craig Venter Institute NIH-NIAID 2008-11-05 Unpublished 508771 28893 003894_GCAT 0 NZ_ABPA00000000 Complete Level 1: Standard Draft 10x 705 62966 8155 9 0 52 Sanger USA clonal isolate of the type II parasites most commonly associated with AIDS clonal isolate of the type II parasites most commonly associated with AIDS Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas campestris BACTERIAL Xanthomonas oryzae pv. armoraciae pv. armoraciae Gi03144 Genome incomplete Public J. Craig Venter Institute, Univ of Maryland - CDCB Salzberg S salzberg@umd.edu Plant Pathogen, Agricultural 329463 003896_GCAT 0 0 0 0 Sanger USA Aerobe Rod-shaped Mesophile gram- Free living Bacterial streak disease Host Motile Pathogen Eukaryota Chordata Mammalia Primates Hominidae Homo EUKARYAL Homo sapiens Pilot 1: Low coverage of 180 individuals Pilot 1: Low coverage of 180 individuals Homo sapiens Gi03145 Genome complete Public 1000 Genomes 1000 Genomes 9606 28911 003897_GCAT 0 0 0 0 Illumina International 180 individuals. 180 individuals. Aerobe Mesophile 36 Eukaryota Chordata Mammalia Primates Hominidae Homo EUKARYAL Homo sapiens Pilot 2: High coverage of two trios. Pilot 2: High coverage of two trios. Homo sapiens Gi03146 Genome complete Public 1000 Genomes 1000 Genomes 9606 28919 003898_GCAT 0 0 0 0 Illumina International two trios. two trios. Aerobe Mesophile 36 Eukaryota Chordata Mammalia Primates Hominidae Homo EUKARYAL Homo sapiens Pilot 3: 1000 individuals Pilot 3: 1000 individuals Homo sapiens (1000 Genomes Project Pilot 3) Gi03147 Genome complete Public 1000 Genomes 1000 Genomes 9606 28917 003899_GCAT 0 0 0 0 Illumina International 1000 genes in 1000 individuals 1000 genes in 1000 individuals Aerobe Mesophile 36 Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori Shi470 Shi470 Helicobacter pylori Shi470 Gc00796 Genome Complete and Published Public Washington Univ Berg B berg@borcim.wustl.edu HPSH 2008-05-14 Unpublished Medical, Human Pathogen 512562 29045 003900_GCAT 642555131 NC_010698 Complete 1608 1609 1 42 USA clinical isolate from gastric antrum from Amerindian resident of remote Amazonian village of Shimaa, Peru Peru Shimaa (Amazonian region), Peru -12.211258 -76.908227 Homo sapiens Patient Gastrointestinal tract Stomach Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Ulcer, Gastric inflammation Human stomach, Host 37 Motile Pathogen Eukaryota Streptophyta Liliopsida Arecales Arecaceae Elaeis EUKARYAL Elaeis guineensis var. dura var. dura African oil palm Gi03149 Genome complete Proprietary Synthetic Genomics Inc., ACGT 51953 003902_GCAT 0 Complete 1800000 0 0 International Eukaryota Streptophyta Malpighiales Euphorbiaceae Jatropha EUKARYAL Jatropha sp. Gi03150 Genome incomplete Proprietary Synthetic Genomics Inc., ACGT 3995 003903_GCAT 0 0 0 0 International Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia BACTERIAL Ralstonia solanacearum IVIA 1602 IVIA 1602 race 3, biovar 2 Gi03151 Genome-Survey incomplete Public Plant Pathogen, Agricultural 305 003904_GCAT 254703 0 0 0 0 Aerobe Rod-shaped Mesophile gram- Free living Wilting disease, Plant rot Soil Motile Pathogen Heterotroph Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus helveticus CM4 CM4 Gi03152 Genome complete Proprietary Kitasato Univ, Calpis Food industry 1587 003905_GCAT 139964 0 Complete 2028 2174 0 Japan Facultative Rod-shaped Mesophile gram+ Free living Chains None Host Nonmotile Probiotic MICROBIAL Marine Roseobacter communities Gm00139 Metagenome incomplete Public Macrogen, Israel Institute of technology Israel Institute of technology Beja O beja@tx.technion.ac.il 003906_GCAT 0 BAC 0 0 0 Sanger Israel Marine unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil microbial communities from USA from USA Terragenomics Gm00140 Metagenome incomplete Public Argonne National Laboratory Environmental 410658 003907_GCAT 0 0 0 0 USA approx. 50 different soil types across the U.S USA approx. 50 different soil types across the U.S Soil unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Salinewater microbial communities from Dead Sea from Dead Sea Community genomics of Dead Sea microbial inoculum Gm00141 Metagenome incomplete Public Macrogen, Israel Institute of technology Israel Institute of technology Beja O beja@tx.technion.ac.il 003908_GCAT 0 0 0 0 Sanger Israel Dead Sea, Israel Israel Dead Sea, Israel 31.500653 35.490986 Fresh water Eukaryota Streptophyta Liliopsida Poales Poaceae Avena EUKARYAL Avena barbata barbed oat Ge00292 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 146530 003909_GCAT 0 Complete 0 0 0 USA Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia BACTERIAL Burkholderia cenocepacia Bu72 Bu72 Gi03153 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@lbl.gov Medical, Human Pathogen 95486 003910_GCAT 74106 0 0 0 3 0 0 Sanger USA Facultative Rod-shaped Mesophile gram- Free living Pneumonia Host Motile Pathogen unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Sediment microbial community from Etolicon Lagoon in Greece from Etolicon Lagoon in Greece Etolico Lagoon Microbiota Gm00142 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov 003911_GCAT 0 0 0 0 USA Greece 38.25 21.10 None Fresh water Bacteria Deinococcus-Thermus Deinococci Thermales Thermaceae Thermus BACTERIAL Thermus scotoductus SA-01, ATCC 700910 SA-01, ATCC 700910 ATCC 700910 Gi03154 Genome incomplete Public Inqaba Biotec Univ of the Free State, National Research Foundation, Biopad Litthauer D LitthaD.SCI@ufs.ac.za Biotechnological 37636 003912_GCAT 249792 0 2300 0 64.9 South Africa groundwater sampled at a 3.2-km depth in a South African gold mine South Africa South African Anaerobe Thermophile 6.5 - 7 Free living None Groundwater, Fresh water 65 Iron reducer, Sulfur oxidizer Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Orientia Orientia tsutsugamushi BACTERIAL Orientia tsutsugamushi Ikeda Ikeda Orientia tsutsugamushi str. Ikeda Gc00813 Genome Complete and Published Public Univ of Tokyo, Kitasato Univ JSPS Hayashi T thayash@med.miyazaki-u.ac.jp OTT 2008-05-30 DNA Research 15, 185-199 Medical, Animal Pathogen 334380 18983 003913_GCAT 299949 642555145 NC_010793 Complete Level 6: Finished 11.5Kb, 45Kb, 1115Kb 46000 pUC18 Phred/Phrap 13x GenomeGambler v1.5 2008 2004 1 0 30 Sanger Korea patient in Niigata Prefecture, Japan Japanese Gilliam serotype and is highly virulent in mice 1979 Japan Niigata Prefecture, Japan 37.953511 139.031525 Homo sapiens Patient Aerobe Rod-shaped Mesophile gram- Free living Scrub typhus Host Motile Intracellular, Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus pleuropneumoniae BACTERIAL Actinobacillus pleuropneumoniae sv 7 AP76 sv 7 AP76 7 Actinobacillus pleuropneumoniae serovar 7 str. AP76 Gc00819 Gi03155 Genome Complete and Published Public Univ of Veterinary Medicine, Hannover Gerlach GF gfgerlach@gmx.de APP7 2008-06-10 Unpublished Animal Pathogen, Swine Pathogen, Medical 537457 29909 003914_GCAT 350634 642555103 NC_010939 Complete 2331 2220 1 3 41 Germany Respiratory tract Facultative Rod-shaped Mesophile gram- Symbiotic Parasitic Chains, Pairs, Singles Necrotizing pleuropneumonia Host, Respiratory tract Nonmotile Virulent, Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli NC-7 NC-7 Escherichia coli NC-7 Gi03156 Genome incomplete Public Leibniz Institute Medical 531853 29837 003915_GCAT 0 0 0 0 Germany Cell wall-less L-form Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host 37 Motile Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis F/IC-Cal3 F/IC-Cal3 F Chlamydia trachomatis F/IC-Cal3 Gi03157 Genome incomplete Public Naval Medical Research Center DOE Animal Pathogen, Medical, Human Pathogen 527018 29787 003916_GCAT 128281 0 0 0 0 USA Persistent urogenital infection Persistent urogenital infection Homo sapiens Urogenital tract Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Urogenital infection Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia ruckeri BACTERIAL Yersinia ruckeri ATCC 29473 ATCC 29473 Yersinia ruckeri ATCC 29473 ATCC 29473 Yes Gi03158 Genome incomplete Public Naval Medical Research Center DOD Medical, Fish Pathogen 527005 29769 003917_GCAT 50988 0 NZ_ACCC00000000 Draft 37.5x 174 3739 2318 47 Sanger USA "rainbow trout, Onchorhynchus mykiss with enteric red mouth disease" rainbow trout, Onchorhynchus mykiss with enteric red mouth disease Onchorhynchus mykiss Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Onchorhynchus mykiss 8022 Enteric Red Mouth Disease Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia rohdei BACTERIAL Yersinia rohdei ATCC 43380 ATCC 43380 Yersinia rohdei ATCC 43380 ATCC 43380 Yes Gi03159 Genome incomplete Public Naval Medical Research Center DOD 527004 29767 003918_GCAT 34461 0 NZ_ACCD00000000 Draft 23.6x 141 4317 3912 46 Sanger USA dog feces Germany dog feces Dog Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living None Host, Feces Motile Non-Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia kristensenii BACTERIAL Yersinia kristensenii WE 180/98 WE 180/98 Yersinia kristensenii WE 180/98 Gi03160 Genome incomplete Public Naval Medical Research Center DOD Medical, Human Pathogen 527016 29765 003919_GCAT 0 0 0 0 Sanger USA human isolate from Belgium Belgium human isolate from Belgium Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Gastroenteritis Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia kristensenii BACTERIAL Yersinia kristensenii WA 948 WA 948 Yersinia kristensenii WA 948 Gi03161 Genome incomplete Public Naval Medical Research Center DOD Medical, Human Pathogen 527015 29763 003920_GCAT 0 0 0 0 Sanger USA human isolate from Finland Finland human isolate from Finland Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Gastroenteritis Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia kristensenii BACTERIAL Yersinia kristensenii 490 490 Yersinia kristensenii 490 Gi03162 Genome incomplete Public Naval Medical Research Center DOD Medical, Human Pathogen 527014 29761 003921_GCAT 490 0 0 0 0 Sanger USA hare in France France hare in France Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Gastroenteritis Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia kristensenii BACTERIAL Yersinia kristensenii 105 105 Yersinia kristensenii 105 Gi03163 Genome incomplete Public Naval Medical Research Center DOD Medical, Human Pathogen 527013 29759 003922_GCAT 105 0 0 0 0 Sanger USA from Denmark Denmark from Denmark Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Gastroenteritis Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia kristensenii BACTERIAL Yersinia kristensenii ATCC 33638 ATCC 33638 Yersinia kristensenii ATCC 33638 ATCC 33638 Yes Gi03164 Genome incomplete Public Naval Medical Research Center DOD Medical, Human Pathogen 527012 29757 003923_GCAT 17733 0 NZ_ACCA00000000 Draft 30.7x 153 5042 4611 47 Sanger USA Human urine Human urine Homo sapiens Urogenital tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Gastroenteritis Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia frederiksenii BACTERIAL Yersinia frederiksenii 867 867 Yersinia frederiksenii 867 Gi03166 Genome incomplete Public Naval Medical Research Center DOD Medical 527011 29753 003925_GCAT 867 0 0 0 0 Sanger USA human isolate from Belgium Belgium human isolate from Belgium Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Host Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia frederiksenii BACTERIAL Yersinia frederiksenii 7175 7175 Yersinia frederiksenii 7175 Gi03167 Genome incomplete Public Naval Medical Research Center DOD Medical 527010 29751 003926_GCAT 7175 0 0 0 0 Sanger USA pig isolate from Belgium Belgium pig isolate from Belgium Sus scrofa Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Host Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia frederiksenii BACTERIAL Yersinia frederiksenii CNY 867 CNY 867 Yersinia frederiksenii CNY 867 Gi03168 Genome incomplete Public Naval Medical Research Center DOD Medical 527009 29749 003927_GCAT 0 0 0 0 Sanger USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Host Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia frederiksenii BACTERIAL Yersinia frederiksenii WE 83/02 WE 83/02 Yersinia frederiksenii WE 83/02 Gi03169 Genome incomplete Public Naval Medical Research Center DOD Medical 527008 29747 003928_GCAT 0 0 0 0 Sanger USA human isolate from Belgium Belgium human isolate from Belgium Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Host Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia frederiksenii BACTERIAL Yersinia frederiksenii WA 933 WA 933 Yersinia frederiksenii WA 933 Gi03170 Genome incomplete Public Naval Medical Research Center DOD Medical 527007 29745 003929_GCAT 0 0 0 0 Sanger USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Host Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia aldovae BACTERIAL Yersinia aldovae ATCC 35236 ATCC 35236 Yersinia aldovae ATCC 35236 ATCC 35236 Yes Gi03171 Genome incomplete Public Naval Medical Research Center DOD Medical 527002 29741 003930_GCAT 39860 0 NZ_ACCB00000000 Draft 27x 210 4304 4033 47 Sanger USA Drinking water in Czechoslovakia Czech republic Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Fresh water Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica Typhi Ty21a Typhi Ty21a Typhi Salmonella enterica subsp. enterica serovar Typhi str. Ty21a Gi03172 Genome incomplete Public Naval Medical Research Center NIH-NIAID Animal Pathogen, Medical, Human Pathogen 527001 29739 003931_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Typhoid fever Host Motile Pathogen Chemoorganotroph Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis F1 F1 Chlamydia trachomatis F1 Gi03173 Genome incomplete Public Naval Medical Research Center DOE Animal Pathogen, Medical, Human Pathogen 527017 29737 003932_GCAT 0 0 0 0 USA Persistent urogenital infection Persistent urogenital infection Homo sapiens Urogenital tract Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Urogenital infection Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis BACTERIAL Bacillus thuringiensis IBL4222 Bacillus thuringiensis IBL4222 Gi03174 Genome incomplete Public Naval Medical Research Center Read TD Agricultural, Insect Pathogen, Biotechnological 527020 29735 003933_GCAT 223527 643886092 NZ_ACNL00000000 Draft 8.4x 383 6574 6758 34 454 USA from a cat from a cat Cat Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains Sotto disease Soil, Plant surface Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis BACTERIAL Bacillus thuringiensis IBL200 Bacillus thuringiensis IBL200 Gi03175 Genome incomplete Public Naval Medical Research Center Read TD Agricultural, Insect Pathogen, Biotechnological 527019 29733 003934_GCAT 223527 643886094 NZ_ACNK00000000 Draft 10.3x 244 6707 6768 34 454 USA Human isolate Human isolate Homo sapiens Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains Sotto disease Plant surface, Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis BACTERIAL Bacillus thuringiensis sv huazhongensis BGSC 4BD1 sv huazhongensis BGSC 4BD1 huazhongensis Bacillus thuringiensis serovar huazhongensis BGSC 4BD1 Gi03176 Genome incomplete Public Naval Medical Research Center Read TD Agricultural, Insect Pathogen, Biotechnological 527030 29729 003935_GCAT 643886096 NZ_ACNI00000000 Draft 20x 278 6203 6117 34 454 USA China Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains Sotto disease Soil, Plant surface Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis BACTERIAL Bacillus thuringiensis sv pondicheriensis BGSC 4BA1 sv pondicheriensis BGSC 4BA1 pondicheriensis Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1 Gi03177 Genome incomplete Public NMRC Read TD Agricultural, Insect Pathogen, Biotechnological 527029 29727 003936_GCAT 643886126 NZ_ACNH00000000 Draft 16.9x 185 6012 6147 34 454 USA soil in India India soil in India Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains Sotto disease Plant surface, Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis BACTERIAL Bacillus thuringiensis sv berliner ATCC 10792 sv berliner ATCC 10792 berliner DSM 2046, ATCC 10792 Yes Gi03178 Genome incomplete Public Naval Medical Research Center Read TD Agricultural, Insect Pathogen, Biotechnological 527031 29723 003937_GCAT 643886085 NZ_ACNF00000000 Draft 12.2x 253 6234 6338 34 454 USA Mediterranean flour moth, Ephestia kuhniella Mediterranean flour moth, Ephestia kuhniella Ephestia kuhniella Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains Sotto disease Plant surface, Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis BACTERIAL Bacillus thuringiensis sv pakistani t13001 sv pakistani t13001 pakistani Bacillus thuringiensis serovar pakistani str. t13001 Gi03180 Genome incomplete Public Naval Medical Research Center Read TD Agricultural, Insect Pathogen, Biotechnological 527027 29721 003939_GCAT 643886090 NZ_ACNC00000000 Draft 36.8x 617 5975 6117 34 454 USA member of the order Lepidoptera which includes moths and butterflies member of the order Lepidoptera which includes moths and butterflies Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains Sotto disease Plant surface, Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis BACTERIAL Bacillus thuringiensis sv thuringiensis T01001 sv thuringiensis T01001 thuringiensis Bacillus thuringiensis serovar thuringiensis str. T01001 Gi03181 Genome incomplete Public Naval Medical Research Center Read TD Agricultural, Insect Pathogen, Biotechnological 527025 29719 003940_GCAT 643886091 NZ_ACNA00000000 Draft 9.2x 246 6298 6414 34 USA Mediterranean flour moth, Ephestia kuhniella Mediterranean flour moth, Ephestia kuhniella Ephestia kuhniella Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains Sotto disease Plant surface, Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis BACTERIAL Bacillus thuringiensis Bt407 Bt407 Bacillus thuringiensis Bt407 Gi03182 Genome incomplete Public Naval Medical Research Center Read TD Agricultural, Insect Pathogen, Biotechnological 527021 29717 003941_GCAT 643886171 NZ_ACMZ00000000 Draft 13.6x 187 6008 6425 34 USA isolate that has been cured of the plasmid that encodes the insecticidal crystalline toxin isolate that has been cured of the plasmid that encodes the insecticidal crystalline toxin Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains Sotto disease Soil, Plant surface Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis BACTERIAL Bacillus thuringiensis sv sotto T04001 sv sotto T04001 sotto Bacillus thuringiensis serovar sotto str. T04001 Gi03183 Genome incomplete Public Naval Medical Research Center Read TD Agricultural, Biotechnological, Insect Pathogen 527026 29715 003942_GCAT 643886089 NZ_ACNB00000000 Draft 31.8x 481 6059 6615 34 454 USA Canada Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains Sotto disease Plant surface, Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis BACTERIAL Bacillus thuringiensis sv tochigiensis BGSC 4Y1 sv tochigiensis BGSC 4Y1 tochigiensis Bacillus thuringiensis serovar tochigiensis BGSC 4Y1 Gi03184 Genome incomplete Public Naval Medical Research Center Read TD Agricultural, Insect Pathogen, Biotechnological 527024 29713 003943_GCAT 643886071 NZ_ACMY00000000 Draft 30.7x 219 5604 5820 34 454 USA soil in Japan Japan soil in Japan Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains Sotto disease Soil, Plant surface Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis BACTERIAL Bacillus thuringiensis sv kurstaki T03a001 sv kurstaki T03a001 kurstaki Bacillus thuringiensis serovar kurstaki str. T03a001 Gi03185 Genome incomplete Public Naval Medical Research Center Read TD Agricultural, Insect Pathogen, Biotechnological 527023 29711 003944_GCAT 643886087 NZ_ACND00000000 Draft 28.2x 337 5493 5648 34 454 USA Mediterranean flour moth, Ephestia kuhniella Mediterranean flour moth, Ephestia kuhniella Ephestia kuhniella Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains Sotto disease Soil, Plant surface Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis BACTERIAL Bacillus thuringiensis sv monterrey BGSC 4AJ1 sv monterrey BGSC 4AJ1 monterrey Bacillus thuringiensis serovar monterrey BGSC 4AJ1 Gi03186 Genome incomplete Public Naval Medical Research Center Read TD Agricultural, Insect Pathogen, Biotechnological 527022 29709 003945_GCAT 643886088 NZ_ACNE00000000 Draft 13.8x 250 6464 6563 34 454 USA Mexico Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains Sotto disease Soil, Plant surface Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas macleodii BACTERIAL Alteromonas macleodii ATCC 27126 ATCC 27126 Alteromonas macleodii ATCC 27126 ATCC 27126 Yes Gi03187 Genome incomplete Public Univ Miguel Hernandez Rodrmguez-Valera F frvalera@umh.es http://egg.umh.es/frvalera/ Environmental 529120 29793 003946_GCAT 638341007 NZ_ABQB00000000 Draft 12x 716 4607 0 44 454 Spain seawater seawater Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Marine Motile Heterotroph Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus mycoides BACTERIAL Bacillus mycoides Rock3-17 Rock3-17 Bacillus mycoides Rock3-17 Gi03189 Genome incomplete Public Naval Medical Research Center Read TD Medical 526999 29705 003948_GCAT 643886173 NZ_ACMW00000000 Draft 9.0x 311 5682 5903 35 USA soil in Maryland USA soil in Maryland Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains None Soil Nonmotile Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus mycoides BACTERIAL Bacillus mycoides Rock1-4 Rock1-4 Bacillus mycoides Rock1-4 Gi03190 Genome incomplete Public Naval Medical Research Center Read TD 526998 29703 003949_GCAT 643886174 NZ_ACMV00000000 Draft 13.4x 611 5780 5938 35 USA soil in Maryland USA soil in Maryland Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains None Soil Nonmotile Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus mycoides BACTERIAL Bacillus mycoides DSM 2048 DSM 2048 Bacillus mycoides DSM 2048 DSM 2048, ATCC 6462 Yes Gi03191 Genome incomplete Public Naval Medical Research Center Read TD 526997 29701 003950_GCAT 643886175 NZ_ACMU00000000 Draft 8.1x 200 5541 5747 35 USA Soil Soil Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains None Soil Nonmotile Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus AH1273 AH1273 Bacillus cereus AH1273 Gi03192 Genome incomplete Public Naval Medical Research Center Read TD Medical, Human Pathogen 526994 29699 003951_GCAT 643886176 NZ_ACMT00000000 Draft 20.9x 412 5749 5897 35 Sanger USA human blood in Iceland Iceland human blood in Iceland Homo sapiens Blood Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Host, Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus AH1272 AH1272 Bacillus cereus AH1272 Gi03193 Genome incomplete Public Naval Medical Research Center Read TD Medical, Human Pathogen 526993 29697 003952_GCAT 643886177 NZ_ACMS00000000 Draft 14.1x 416 5747 5898 35 Sanger USA amniotic fluid in Iceland Iceland amniotic fluid in Iceland Homo sapiens Female Urogenital tract Amniotic fluid Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Host, Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus AH1271 AH1271 Bacillus cereus AH1271 Gi03194 Genome incomplete Public Naval Medical Research Center Read TD Medical, Human Pathogen 526992 29695 003953_GCAT 643886178 NZ_ACMR00000000 Draft 15.2X 367 5620 5742 35.3 454 USA lamp in a hospital in Iceland Iceland lamp in a hospital in Iceland Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Host, Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus AH676 AH676 Bacillus cereus AH676 Gi03195 Genome incomplete Public Naval Medical Research Center Read Medical, Human Pathogen 526991 29693 003954_GCAT 643886179 NZ_ACMQ00000000 Draft 12.9X 315 5563 5696 35 Sanger USA Soil in Norway Norway Soil in Norway Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Host, Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus AH603 AH603 Bacillus cereus AH603 Gi03196 Genome incomplete Public Naval Medical Research Center Read TD Medical, Human Pathogen 526990 29691 003955_GCAT 643886180 NZ_ACMP00000000 Draft 16.4X 251 5774 5896 35 454 USA isolated from a dairy isolated from a dairy Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Host, Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus F65185 F65185 Bacillus cereus F65185 Gi03197 Genome incomplete Public Naval Medical Research Center Read TD Medical, Human Pathogen 526989 29689 003956_GCAT 643886101 NZ_ACMO00000000 Draft 9.1X 267 6106 6125 34.7 454 USA open fracture in New York USA New York 40.756054 -73.986951 Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Soil, Host Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus Rock4-18 Rock4-18 Bacillus cereus Rock4-18 Gi03198 Genome incomplete Public Naval Medical Research Center Read TD Medical, Human Pathogen 526988 29687 003957_GCAT 643886105 NZ_ACMN00000000 Draft 9x 176 5906 2876 35 454 USA "soil in Rockville, Maryland" USA Rockville, Maryland 39.083916 -77.156823 Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Host, Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus Rock4-2 Rock4-2 Bacillus cereus Rock4-2 Gi03199 Genome incomplete Public Naval Medical Research Center Read TD Medical, Human Pathogen 526987 29685 003958_GCAT 643886156 NZ_ACMM00000000 Draft 16.2x 323 5737 5756 34 Sanger USA "soil in Rockville, Maryland" USA Rockville, Maryland Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Host, Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus Rock3-44 Rock3-44 Bacillus cereus Rock3-44 Gi03200 Genome incomplete Public Naval Medical Research Center Read TD Medical, Human Pathogen 526986 29683 003959_GCAT 643886026 NZ_ACML00000000 Draft 15.9x 1055 4894 4827 36 Sanger USA "soil in Rockville, Maryland" USA Rockville, Maryland 39.083916 -77.156823 Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Soil, Host Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus Rock3-42 Rock3-42 Bacillus cereus Rock3-42 Gi03201 Genome incomplete Public Naval Medical Research Center Read TD Medical, Human Pathogen 526985 29681 003960_GCAT 643886157 NZ_ACMK00000000 Draft 192 5183 5396 35 Sanger USA "soil in Rockville, Maryland" USA Rockville, Maryland 39.083916 -77.156823 Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Soil, Host Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus Rock3-29 Rock3-29 Bacillus cereus Rock3-29 Gi03202 Genome incomplete Public Naval Medical Research Center Read TD Medical, Human Pathogen 526984 29679 003961_GCAT 643886158 NZ_ACMJ00000000 Draft 19.1x 187 5859 5945 34 Sanger USA Soil in Rockville, Maryland USA Rockville, Maryland 39.083916 -77.156823 Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Soil, Host Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus Rock3-28 Rock3-28 Bacillus cereus Rock3-28 Gi03203 Genome incomplete Public Naval Medical Research Center Read TD Medical, Human Pathogen 526983 29677 003962_GCAT 643886159 NZ_ACMI00000000 Draft 15.1x 1149 5926 5783 35 Sanger USA "soil in Rockville, Maryland" USA Rockville, Maryland 39.083916 -77.156823 Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Soil, Host Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus Rock1-3 Rock1-3 Bacillus cereus Rock1-3 Gi03205 Genome incomplete Public Naval Medical Research Center Read TD Medical, Human Pathogen 526981 29673 003964_GCAT 643886160 NZ_ACMG00000000 Draft 7.5x 171 5842 5893 34 Sanger USA "soil in Rockville, Maryland" USA Rockville, Maryland 39.083916 -77.156823 Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Soil, Host Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus ATCC 10876 ATCC 10876 Bacillus cereus ATCC 10876 DSM 9378, ATCC 10876 Gi03206 Genome incomplete Public Naval Medical Research Center Read TD Medical, Human Pathogen 526980 29671 003965_GCAT 10876 643886035 NZ_ACLT00000000 Draft 32.5x 245 5914 5949 34 Sanger USA Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Host, Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus 95/8201 95/8201 Bacillus cereus 95/8201 Gi03207 Genome incomplete Public Naval Medical Research Center Read TD Medical, Human Pathogen 526979 29669 003966_GCAT 643886161 NZ_ACMF00000000 Draft 9.2x 228 5561 5714 35 Sanger USA case of endocarditis in the United Kingdom case of endocarditis in the United Kingdom Homo sapiens Patient with endocarditis Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Host, Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus BDRD-Cer4 BDRD-Cer4 Bacillus cereus BDRD-Cer4 Gi03208 Genome incomplete Public Naval Medical Research Center Read TD Medical, Human Pathogen 526978 29667 003967_GCAT 643886162 NZ_ACME00000000 Draft 7.4x 117 5385 5472 35 Sanger USA Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Host, Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus ATCC 4342 ATCC 4342 Bacillus cereus ATCC 4342 ATCC 4342, DSM 6151 Yes Gi03209 Genome incomplete Public Naval Medical Research Center Read TM Medical, Human Pathogen 526977 29665 003968_GCAT 4342 643886033 NZ_ACLZ00000000 Draft 8.2x 105 5224 5382 35 Sanger USA Rice paddy soil gamma phage sensitive strain Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Host, Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus BDRD-ST196 BDRD-ST196 Bacillus cereus BDRD-ST196 Gi03210 Genome incomplete Public Naval Medical Research Center Read TM Medical, Human Pathogen 526976 29663 003969_GCAT 643886163 NZ_ACMD00000000 Draft 37.3x 284 5548 5629 35 Sanger USA Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Host, Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus BDRD-ST26 BDRD-ST26 Bacillus cereus BDRD-ST26 Gi03211 Genome incomplete Public Naval Medical Research Center Read TM Medical, Human Pathogen 526975 29661 003970_GCAT 643886164 NZ_ACMC00000000 Draft 10.4x 182 5549 5868 35 Sanger USA Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Host, Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus BDRD-ST24 BDRD-ST24 Bacillus cereus BDRD-ST24 Gi03212 Genome incomplete Public Naval Medical Research Center NCBI Read TM Medical, Human Pathogen 526974 29659 003971_GCAT 643886165 NZ_ACMB00000000 Draft 33.6x 185 5417 5508 35 Sanger USA Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Host, Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus m1293 m1293 Bacillus cereus m1293 Gi03213 Genome incomplete Public Naval Medical Research Center Read TD Medical, Human Pathogen 526973 29657 003972_GCAT 643886042 NZ_ACLS00000000 Draft 40.9x 241 5245 5356 35 Sanger USA cream cheese cream cheese Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Host, Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus AH621 AH621 Bacillus cereus AH621 Gi03214 Genome incomplete Public Naval Medical Research Center Read TD Medical, Human Pathogen 526972 29655 003973_GCAT 643886031 NZ_ACLX00000000 Draft 8.5x 190 5655 5758 35 Sanger USA soil in Norway Norway soil in Norway Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Host, Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus MM3 MM3 Bacillus cereus MM3 Gi03215 Genome incomplete Public Naval Medical Research Center Read TD Medical, Human Pathogen 526971 29653 003974_GCAT 643886038 NZ_ACLW00000000 Draft 30.8x 197 5527 5636 35 Sanger USA food food Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Host, Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus BGSC 6E1 BGSC 6E1 Bacillus cereus BGSC 6E1 Gi03216 Genome incomplete Public Naval Medical Research Center Read TD Medical, Human Pathogen 526970 29651 003975_GCAT 643886036 NZ_ACLU00000000 Draft 30.1x 202 5709 5766 34 Sanger USA produces chitinase Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Host, Soil Motile Pathogen, Chitinase producer Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus mm1550 mm1550 Bacillus cereus mm1550 Gi03217 Genome incomplete Public Naval Medical Research Center Read TD Medical, Human Pathogen 526969 29649 003976_GCAT 643886166 NZ_ACMA00000000 Draft 33.7x 124 5234 5234 35 Sanger USA uncooked chicken in Brazil Brazil uncooked chicken in Brazil Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Host, Soil Motile Pathogen, Chitinase producer Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus R309803 R309803 Bacillus cereus R309803 Gi03218 Genome incomplete Public Naval Medical Research Center Read TD Medical, Human Pathogen 526968 29647 003977_GCAT 643886032 NZ_ACLY00000000 Draft 43.8x 227 5563 5670 35 454 USA case of septicemia in the United Kingdom United Kingdom case of septicemia in the United Kingdom Homo sapiens Blood Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Host, Soil Motile Chitinase producer, Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus 172560W 172560W Bacillus cereus 172560W Gi03219 Genome incomplete Public Naval Medical Research Center Read TD Medical, Human Pathogen 526967 29645 003978_GCAT 643886037 NZ_ACLV00000000 Draft 34.1x 152 5684 5720 34 454 USA burn wound burn wound Homo sapiens Skin Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Host, Soil Motile Pathogen, Chitinase producer Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis 34F2 (NMRC) 34F2 (NMRC) Bacillus anthracis '34F2 (NMRC)' Gi03220 Genome incomplete Public Naval Medical Research Center Read TD http://www.tigr.org/~tread/ Medical, Biothreat 526966 29643 003979_GCAT 0 0 0 0 WGS USA Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains, Pairs, Singles None Soil Motile Non-Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis 34F2 delta gerH 34F2 delta gerH Bacillus anthracis '34F2 delta gerH' Gi03221 Genome incomplete Public Naval Medical Research Center Read TD http://www.tigr.org/~tread/ Medical, Biothreat 526965 29641 003980_GCAT 0 0 0 0 WGS USA Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains, Pairs, Singles None Soil Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter baumannii BACTERIAL Acinetobacter baumannii WBA9388 WBA9388 Gi03222 Genome incomplete Public Naval Medical Research Center Medical, Human Pathogen 526964 29639 003981_GCAT 0 0 0 0 USA case of ventilator-associated pneumonia case of ventilator-associated pneumonia Homo sapiens Patient with pneumonia Airways Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Nosocomial infection, Pneumonia Host, Fresh water Nonmotile Pathogen Heterotroph, Chemoheterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter baumannii BACTERIAL Acinetobacter baumannii WBL7215 WBL7215 Acinetobacter baumannii WBL7215 Gi03223 Genome incomplete Public Naval Medical Research Center Medical, Human Pathogen 526963 29635 003982_GCAT 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Nosocomial infection, Pneumonia Host, Fresh water Nonmotile Pathogen Heterotroph, Chemoheterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter baumannii BACTERIAL Acinetobacter baumannii WBL7355 WBL7355 Acinetobacter baumannii WBL7355 Gi03224 Genome incomplete Public Naval Medical Research Center Medical, Human Pathogen 526962 29633 003983_GCAT 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Nosocomial infection, Pneumonia Host, Fresh water Nonmotile Pathogen Chemoheterotroph, Heterotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium BACTERIAL Enterococcus faecium E980 E980 Enterococcus faecium E980 Gi03225 Genome incomplete Public Univ Medical Center Utrecht Medical, Human Pathogen 529885 29607 003984_GCAT 0 0 0 0 Netherlands healthy human volunteer in 1998 in the Netherlands 1998 Netherlands healthy human volunteer in 1998 in the Netherlands Homo sapiens Healthy Facultative Coccus-shaped Mesophile Halotolerant gram+ Free living Opportunistic infection Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides cellulosilyticus BACTERIAL Bacteroides cellulosilyticus CRE21, DSM 14838 CRE21, DSM 14838 Bacteroides cellulosilyticus DSM 14838 CCUG 44979, DSM 14838 Yes Gi03226 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Microbiome Project (HMP), Medical, Human Gut Microbiome Initiative (HGMI) 537012 30027 003985_GCAT 111 643886111 NZ_ACCH00000000, ACCH00000000 Draft 466253 Newbler 2.0.00.20 16.3X GeneMark v3.3, Glimmer2 v2.13 525 6726 5773 42 454-FLX USA Human fecal sample DSM 14838 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host, Human fecal, Human intestinal microflora 37 Nonmotile Cellulose degrader Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella copri BACTERIAL Prevotella copri CB7, DSM 18205 CB7, DSM 18205 Prevotella copri DSM 18205 JCM 13464, DSM 18205 Yes Gi03227 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 537011 30025 003986_GCAT 651 177465 643886200 NZ_ACBX00000000, ACBX00000000 Draft Newbler 2.0.00.20 23.9X GeneMark v3.3, Glimmer2 v2.13 266 3347 3356 44 454-FLX USA Human feces in Japan DSM 18205 Japan Human feces in Japan Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Human intestinal microflora, Human fecal, Host Nonmotile Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Desulfitobacterium Desulfitobacterium hafniense BACTERIAL Desulfitobacterium hafniense SP7, DSM 13498 SP7, DSM 13498 Desulfitobacterium hafniense DSM 13498 DSM 13498 No Gi03228 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 537010 30023 003987_GCAT 322 0 In progress 0 0 0 Sanger USA Human feces DSM 13498 Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram- Free living Pairs, Singles, Chains None Human intestinal microflora, Human fecal, Host Motile Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus subtilis BACTERIAL Bacillus subtilis subtilis L170 L170 Bacillus subtilis subsp. subtilis str. L170 Gi03229 Genome incomplete Public Fritz Lipmann Institute Biotechnological 536088 30019 003988_GCAT 0 0 0 0 Germany Facultative Rod-shaped Sporulating Mesophile gram+ Free living None Soil Motile Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus subtilis BACTERIAL Bacillus subtilis subtilis N170 N170 Bacillus subtilis subsp. subtilis str. N170 Gi03230 Genome incomplete Public Fritz Lipmann Institute Biotechnological 536089 30013 003989_GCAT 0 0 0 0 Germany Facultative Rod-shaped Sporulating Mesophile gram+ Free living None Soil Motile Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Parabacteroides Parabacteroides johnsonii BACTERIAL Parabacteroides johnsonii M-165, DSM 18315 M-165, DSM 18315 Parabacteroides johnsonii DSM 18315 JCM 13406, DSM 18315, CIP 109537 Yes Gi03231 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 537006 30007 003990_GCAT 618 642979358 ABYH00000000, NZ_ABYH00000000 Draft Newbler 2.0.00.20 16.4X GeneMark v3.3, Glimmer2 v2.13 527 4612 4579 45.3 Sanger, 454-FLX USA Human feces DSM 18315 Japan Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Human intestinal microflora, Human fecal, Host Nonmotile Non-Pathogen Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium BACTERIAL Enterococcus faecium E1162 E1162 Enterococcus faecium E1162 Gi03232 Genome incomplete Public Univ Medical Center Utrecht Medical, Human Pathogen 535206 29921 003991_GCAT 0 0 0 0 Netherlands bloodstream infection of a hospitalized patient in 1997 in France 1997 France bloodstream infection of a hospitalized patient in 1997 in France Homo sapiens Patient with bloodstream infection Blood Facultative Coccus-shaped Mesophile Halotolerant gram+ Free living Chains, Pairs Opportunistic infection Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus subtilis BACTERIAL Bacillus subtilis NCIB3 610 NCIB3 610 Bacillus subtilis subsp. subtilis str. NCIB 3610 NCIB3610, BGSC 3A1T Gi03233 Genome incomplete Public BCM-HGSC Highlander, SK sarahh@bcm.tmc.edu Biotechnological 535026 29891 003992_GCAT 643886130 NZ_ABQL00000000 Draft 49x 4292 0 43 USA Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains, Singles None Soil Motile Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus subtilis BACTERIAL Bacillus subtilis subtilis 168 168 Bacillus subtilis subsp. subtilis str. 168 NCIB3610, BGSC 1A700 Gi03234 Genome incomplete Public BCM-HGSC Chen R ruichen@bcm.tmc.edu Biotechnological 224308 29889 003993_GCAT 52408 643886132 NZ_ABQK00000000 Draft 38.2x 4214 0 43 USA Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains, Singles None Soil Motile Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium BACTERIAL Enterococcus faecium E1071 E1071 Enterococcus faecium E1071 Gi03235 Genome incomplete Public Univ Medical Center Utrecht Medical, Human Pathogen 535205 29887 003994_GCAT 0 0 0 0 Netherlands feces of a hospitalized patient in 2000 in the Netherlands 2000 Netherlands feces of a hospitalized patient in 2000 in the Netherlands Homo sapiens Patient Gastrointestinal tract Feces Facultative Coccus-shaped Mesophile Halotolerant gram+ Free living Chains, Pairs Opportunistic infection Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum E1 BoNT E Beluga BoNT E Beluga Clostridium botulinum E1 str. 'BoNT E Beluga' Gi03236 Genome incomplete Public Los Alamos National Laboratory, DOE Joint Genome Institute Brettin T brettin@lanl.gov Medical, Human Pathogen 536233 29861 003995_GCAT 0 0 0 0 USA Foodborne botulism outbreak in Canada Canada Foodborne botulism outbreak in Canada Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains, Pairs, Singles Botulism Food, Marine 37 Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum A2 Kyoto-F Kyoto-F Clostridium botulinum A2 str. Kyoto Gc00983 Gi03237 Genome Complete and Published Public Los Alamos National Laboratory, DOE Joint Genome Institute Brettin T brettin@lanl.gov CLM 2009-04-15 Unpublished Medical, Human Pathogen 536232 29859 003996_GCAT 643692016 NC_012563 Complete Level 6: Finished 4155 4035 1 0 28 USA infant botulism in Kyoto, Japan in 1978 1978 Japan infant botulism in Kyoto, Japan in 1978 35.011636 135.768029 Homo sapiens Infant Patient with botulism Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains, Pairs, Singles Botulism Marine, Food 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei MSHR346 MSHR346 Burkholderia pseudomallei MSHR346 Gi03238 Genome incomplete Public Los Alamos National Laboratory, DOE Joint Genome Institute Brettin T brettin@lanl.gov Animal Pathogen, Medical, Human Pathogen 536230 29855 003997_GCAT 0 NZ_ACOJ00000000 Draft 10x 1 3250 3391 68 Sanger USA sputum of a melioidosis patient who was admitted to the Royal Darwin Hospital, Northern Territory, Australia in 1995 Australia sputum of a melioidosis patient who was admitted to the Royal Darwin Hospital, Northern Territory, Australia in 1995 -12.353811 130.882602 Homo sapiens Airways Aerobe Rod-shaped Mesophile gram- Free living Melioidosis Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus subtilis BACTERIAL Bacillus subtilis subtilis SMY SMY Bacillus subtilis subsp. subtilis str. SMY NCIB3610 Gi03239 Genome incomplete Public BCM-HGSC Chen R ruichen@bcm.tmc.edu Biotechnological 535024 29851 003998_GCAT 643886129 NZ_ABQN00000000 Draft 39.5x 4214 0 43 USA Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains, Singles None Soil Motile Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus subtilis BACTERIAL Bacillus subtilis subtilis JH642 JH642 BGSC 1A96 Gi03274 Genome incomplete Public BCM-HGSC Chen R ruichen@bcm.tmc.edu Biotechnological 535025 29817 004036_GCAT 643886131 NZ_ABQM00000000 Draft 33x 4187 0 43 USA one of the most commonly used laboratory strains Facultative Rod-shaped Sporulating Mesophile gram+ Free living Singles, Chains None Soil 25 - 35 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia frederiksenii BACTERIAL Yersinia frederiksenii WA 935 WA 935 Yersinia frederiksenii WA 935 Gi03240 Genome incomplete Public Naval Medical Research Center DOD Medical, Human Pathogen 527006 29789 003999_GCAT 0 0 0 0 Sanger USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Gastroenteritis Host Motile Pathogen Heterotroph Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus pumilus BACTERIAL Bacillus pumilus ATCC 7061 ATCC 7061 Bacillus pumilus ATCC 7061 ATCC 7061 Yes Gi03241 Genome incomplete Public J. Craig Venter Institute Brettin T brettin@lanl.gov BAT Medical 536229 29785 004000_GCAT 319639 642791616 NZ_ABRX00000000 Draft 3833 3966 41 USA Aerobe Rod-shaped Sporulating Mesophile gram+ Free living None Soil Motile Non-Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Rhizobium Rhizobium etli BACTERIAL Rhizobium etli 8C-3 8C-3 Rhizobium etli 8C-3 Gi03242 Genome incomplete Public UNAM Gonzalez V vgonzal@cifn.unam.mx Biotechnological, Agricultural 538025 29559 004001_GCAT 642979303 NZ_ABRA00000000 Draft 1x 3469 0 61 Mexico Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Mutualistic Singles None Host, Root nodule Motile Nitrogen fixation Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Wolbachia Wolbachia endosymbiont of Culex quinquefasciatus BACTERIAL Wolbachia pipientis (Culex quinquefasciatus) Pel wPip (Culex quinquefasciatus) Pel wPip Wolbachia endosymbiont of Culex quinquefasciatus Pel Gc00820 Genome Complete and Published Public Sanger Institute Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ WP 2008-06-13 Mol. Biol. Evol. 25, 1877-87 Biotechnological 570417 30313 004002_GCAT 308581 642555168 NC_010981 Complete 1482 1312 34.2 United Kingdom preblastoderm embryos of the Pel strain of Culex pipiens mosquitoes Culex quinquefasciatus Aerobe Coccus-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Culex quinquefasciatus None Host, Insect endosymbiont Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus casei BACTERIAL Lactobacillus casei BL23 BL23 Lactobacillus casei BL23 Gc00822 Genome Complete and Published Public CNRS Deutscher J josef.deutscher@grignon.inra.fr LCABL 2008-06-24 Unpublished Biotechnological, Medical, Lactic acid production, Food industry 543734 30359 004003_GCAT 27334 642555134 NC_010999 Complete 3079 3044 1 0 46 Sanger France Homo sapiens Gastrointestinal tract Intestinal tract Facultative Rod-shaped Mesophile gram+ Free living Chains None Host, Intestinal microflora Nonmotile Probiotic Bacteria Proteobacteria Deltaproteobacteria Myxococcales Polyangiaceae Byssovorax BACTERIAL Byssovorax cruenta By c2, DSM 14553 By c2, DSM 14553 JCM 12614, DSM 14553 Yes Gi03243 Genome incomplete Public DOE Joint Genome Institute DOE Anderson I IJAnderson@lbl.gov Biotechnological, Bioenergy 293647 004004_GCAT 108677 0 Awaiting DNA 0 0 69.9 454, Sanger USA Soil with rotting plant material; USA, Arizona USA 17012562 Anaerobe Mesophile gram- Free living None Soil Cellulose degrader Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium BACTERIAL Eubacterium cellulosolvens Gi03244 Genome incomplete Public DOE Joint Genome Institute DOE Anderson I IJAnderson@lbl.gov Biotechnological, Bioenergy 29322 004005_GCAT 13987 0 GeneMark 0 0 50 454, Sanger USA Sheep rumen Sheep rumen Sheep Gastrointestinal tract Rumen Anaerobe Rod-shaped Mesophile gram+ Free living None Rumen Motile Cellulose degrader Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium BACTERIAL Clostridium alkalicellulosi Z-7026, DSM 17461 Z-7026, DSM 17461 DSM 17461 Yes Gi03245 Genome incomplete Public DOE Joint Genome Institute DOE Anderson I IJAnderson@lbl.gov Bioenergy, Cellulase production, Biotechnological 320502 33853 004006_GCAT 0 In progress 0 0 52.6 454, Sanger USA Deposits of soda lake; Russia, Buryatiya, Beloe soda lake Russia 53.998709 112.891865 Anaerobe Rod-shaped Sporulating Mesophile Halophile 8 - 10.2 gram+ Free living None Soil 35 Alkaliphile, Cellulose degrader Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Sinorhizobium BACTERIAL Sinorhizobium medicae AK83 AK83 Gi03246 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 382 004007_GCAT 261616 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Mutualistic None Soil 28 Motile Nitrogen fixation Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Sinorhizobium BACTERIAL Sinorhizobium medicae BL225C BL225C Gi03247 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 382 004008_GCAT 261616 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Mutualistic None Soil 28 Motile Nitrogen fixation Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bradyrhizobiaceae Rhodopseudomonas Rhodopseudomonas palustris BACTERIAL Rhodopseudomonas palustris DX-1 DX-1 Gi03248 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Hydrogen production, Energy production 652103 38503 004009_GCAT 246026 0 0 0 0 USA Facultative Rod-shaped Mesophile gram- Free living Singles None Fresh water, Soil Motile Phototroph Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Piscirickettsiaceae Cycloclasticus Cycloclasticus pugetii BACTERIAL Cycloclasticus pugetii PS-1 PS-1 Gi03249 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Bioremediation 655438 38693 004010_GCAT 7714 0 0 0 0 USA Aerobe Rod-shaped Mesophile gram- Free living None Sediment, Marine Motile PAH-degrading Bacteria Tenericutes Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma BACTERIAL Candidatus Phytoplasma mali AT AT Candidatus Phytoplasma mali Gc00828 Genome Complete and Published Public Max Planck Institute Kube M kube@molgen.mpg.de ATP 2008-07-05 BMC Genomics 9, 306 Plant Pathogen, Agricultural 37692 25335 004011_GCAT 345429 642555118 NC_011047 Complete PHRAP, Consed 20x 601 518 1 0 21 Germany Heidelberg, Germany from a symptomatic apple tree Germany Heidelberg, Germany from a symptomatic apple tree 49.401929 8.680239 Aerobe Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Apple proliferation disease Host Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Pestoides A Pestoides A Gi03250 Genome incomplete Public Los Alamos National Laboratory, DOE Joint Genome Institute Brettin T brettin@lanl.gov Animal Pathogen, Medical, Human Pathogen, Biothreat 545431 30511 004013_GCAT 0 NZ_ACNT00000000 Draft 2 Kb, 6 Kb Phred/Phrap/Consed 30x (5x Sanger; 25x 454) 37 4750 4844 47 Sanger, 454 USA USSR in the 1960s 1960's Russia USSR in the 1960s Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic and Pneumonic plague Host Motile Pathogen Heterotroph Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum BACTERIAL Fusobacterium periodonticum ATCC 33693 ATCC 33693 Fusobacterium periodonticum ATCC 33693 ATCC 33693 Yes Gi03251 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu http://www.genome.wustl.edu/info/contact_info.cgi Human Microbiome Project (HMP), Medical, Human Pathogen 546275 30495 004014_GCAT 398 0 NZ_ACJY00000000, ACJY00000000 Draft 28.3x 143 2567 0 27 454-FLX USA Human oral isolate ATCC 33693 Homo sapiens Oral Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Periodontitis Host Nonmotile Pathogen Chemoorganotroph Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Eikenella Eikenella corrodens BACTERIAL Eikenella corrodens ATCC 23834 ATCC 23834 Eikenella corrodens ATCC 23834 ATCC 23834, BCRC 14415, CCUG 2138, DSM 8340 Yes Gi03252 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu http://www.genome.wustl.edu/info/contact_info.cgi Human Microbiome Project (HMP), Medical, Human Pathogen 546274 30493 004015_GCAT 335 643886208 NZ_ACEA00000000, ACEA00000000 Complete Newbler 2.0.00.20 36.1X 65 2135 2679 0 454 USA Sputum, South Carolina ATCC 23834 USA sputum 34.021575 -81.037104 Homo sapiens Oral Sputum Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Periodontitis Host Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Veillonella Veillonella dispar BACTERIAL Veillonella dispar ATCC 17748 ATCC 17748 Veillonella dispar ATCC 17748 ATCC 17748 Yes Gi03253 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu http://www.genome.wustl.edu/info/contact_info.cgi Medical, Human Microbiome Project (HMP) 546273 30491 004016_GCAT 871 126984 643886074 ACIK00000000, NZ_ACIK00000000 Complete 41.6x 25 2116 2017 38 454 USA Human mouth ATCC 17748 Homo sapiens Oral Mouth Anaerobe Coccus-shaped Mesophile gram- Free living Host, Human oral microflora Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Selenomonas Selenomonas sputigena BACTERIAL Selenomonas sputigena ATCC 35185 ATCC 35185 Selenomonas sputigena ATCC 35185 ATCC 35185, VPI D19B-28 Yes Gi03254 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu http://www.genome.wustl.edu/info/contact_info.cgi Medical, Human Microbiome Project (HMP) 546271 30489 004017_GCAT 755 31951 0 NZ_ACKP00000000, ACKP00000000 Draft 26.6x 72 2551 0 57 454-FLX USA Gingival sulcus ATCC 35185 Homo sapiens Oral Gingival crevices Anaerobe Rod-shaped Mesophile gram- Free living None Host, Human oral microflora Motile Bacteria Firmicutes Clostridia Clostridiales Peptostreptococcaceae Filifactor Filifactor alocis BACTERIAL Filifactor alocis ATCC 35896 ATCC 35896 Filifactor alocis ATCC 35896 ATCC 35896 Yes Gi03256 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 546269 30485 004019_GCAT 389 14178 0 In progress 0 0 0 USA Human gingival sulcus, Virginia ATCC 35896 USA Human gingival sulcus, Virginia Homo sapiens Oral Gingival crevices Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host, Human oral microflora Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria subflava BACTERIAL Neisseria subflava NJ9703 NJ9703 Neisseria subflava NJ9703 Unknown Gi03257 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu http://www.genome.wustl.edu/info/contact_info.cgi Human Microbiome Project (HMP), Medical 546268 30483 004020_GCAT 610 16823 643886194 NZ_ACEO00000000, ACEO00000000 Complete Newbler 2.0.00.20 14.3X 74 2268 2696 48 454 USA Oral cavity of a healthy individual Oral cavity of a healthy individual Homo sapiens Healthy Oral Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Tetrads, Pairs Endocarditis, Meningitis, Septicemia Host, Human oral microflora Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria polysaccharea BACTERIAL Neisseria polysaccharea ATCC 43768 ATCC 43768 Neisseria polysaccharea ATCC 43768 NGC 11858, NCTC 11858, ATCC 43768, LNP N462, CIP 100.113 Unknown Gi03258 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu http://www.genome.wustl.edu/info/contact_info.cgi Medical, Human Microbiome Project (HMP) 546267 30479 004021_GCAT 606 0 In progress 0 0 0 USA throat of a healthy child ATCC 43768 throat of a healthy child Homo sapiens Child Healthy Airways Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs, Tetrads None Host, Human oral microflora Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria mucosa BACTERIAL Neisseria mucosa C102 C102 Unknown Gi03259 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 435832 38747 004022_GCAT 604 0 In progress 0 0 0 USA Michael Surette, U. of Calgary, Canada Homo sapiens Airways Throat swab Upper respiratory tract Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs None Host, Human oral microflora Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria lactamica BACTERIAL Neisseria lactamica ATCC 23970 ATCC 23970 Neisseria lactamica ATCC 23970 NCDC A7515, ATCC 23970, NCTC 10617 Yes Gi03260 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu http://www.genome.wustl.edu/info/contact_info.cgi Medical, Human Microbiome Project (HMP) 546265 30475 004023_GCAT 601 643886202 NZ_ACEQ00000000, ACEQ01000000 Complete Newbler 2.0.00.20 28.4X 142 2107 2639 52.3 454 USA nasopharyngeal isolate ATCC 23970 nasopharyngeal isolate Homo sapiens Airways Nasopharynx Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs None Host, Human oral microflora Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria flavescens BACTERIAL Neisseria flavescens NRL30031/H210 NRL30031/H210 Neisseria flavescens NRL30031/H210 NRL30031/H210 Unknown Gi03261 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu http://www.genome.wustl.edu/info/contact_info.cgi Medical, Human Microbiome Project (HMP) 546264 30473 004024_GCAT 599 643886198 NZ_ACEN00000000, ACEN00000000 Complete Newbler 2.0.00.20 31.4X 117 2205 2595 49.2 454 USA Homo sapiens Airways Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs None Host, Human oral microflora Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria elongata BACTERIAL Neisseria elongata glycolytica ATCC 29315 ATCC 29315 Neisseria elongata subsp. glycolytica ATCC 29315 NCTC 11050, ATCC 29315 Yes Gi03262 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu http://www.genome.wustl.edu/info/contact_info.cgi Medical, Human Microbiome Project (HMP) 546263 30471 004025_GCAT 596 0 In progress 0 0 0 USA throat swab ATCC 29315 throat swab Homo sapiens Airways Nasopharynx Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs None Host, Human oral microflora Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria cinerea BACTERIAL Neisseria cinerea ATCC 14685 ATCC 14685 Neisseria cinerea ATCC 14685 ATCC 14685 Yes Gi03263 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu http://www.genome.wustl.edu/info/contact_info.cgi Medical, Human Microbiome Project (HMP) 546262 30469 004026_GCAT 595 643886151 NZ_ACDY00000000, ACDY00000000 Complete Newbler 2.0.00.20 42.6X 47 1862 2198 50.8 454 USA German from the nasopharyngeal mucosa of a healthy human ATCC 14685 Germany German from the nasopharyngeal mucosa of a healthy human Homo sapiens Male Healthy Airways Nasopharynx Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs None Host, Human oral microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Nocardiaceae Rhodococcus Rhodococcus opacus BACTERIAL Rhodococcus opacus B4 PD630 B4 PD630 Rhodococcus opacus PD630 Gi03264 Genome incomplete Public Broad Institute NIH-NIAID MSC msc@broad.mit.edu Biotechnological, Bioenergy 632772 30413 004027_GCAT 0 0 0 0 USA gas works plant soil sample in Germany Germany gas works plant soil sample in Germany Aerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Filaments Soil Nonmotile Lipid accumulating, Hydrocarbon degrading Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium BACTERIAL Enterococcus faecium E1636 E1636 Enterococcus faecium E1636 Gi03265 Genome incomplete Public Univ Medical Center Utrecht Medical, Human Pathogen 544875 30403 004028_GCAT 0 0 0 0 Netherlands Facultative Coccus-shaped Mesophile Halotolerant gram+ Free living Chains, Pairs Opportunistic infection Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori B128 B128 Helicobacter pylori B128 Gi03266 Genome incomplete Public Vanderbilt Univ Medical, Human Pathogen 544406 30397 004029_GCAT 642979331 NZ_ABSY00000000 Draft 20x 73 1649 1731 38 USA gastric ulcer gastric ulcer Homo sapiens Patient with gastric ulcer Gastrointestinal tract Stomach Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Ulcer, Gastric inflammation Host, Human stomach 37 Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori 98-10 98-10 Helicobacter pylori 98-10 Gi03267 Genome incomplete Public Vanderbilt Univ Medical, Human Pathogen 544405 30395 004030_GCAT 642979330 NZ_ABSX00000000 Draft 20x 51 1571 1527 38 USA gastric cancer Homo sapiens Patient with cancer Gastrointestinal tract Stomach Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Ulcer, Gastric inflammation Host, Human stomach 37 Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema Treponema primitia BACTERIAL Treponema primitia ZAS-2 ZAS-2 Treponema primitia ZAS-2 Gi03268 Genome incomplete Public J. Craig Venter Institute, CalTech NSF Leadbetter J http://www.its.caltech.edu/~jaredl/ Energy production, Biotechnological 545694 30189 004031_GCAT 4114 0 0 0 60 USA hindgut of the Pacific dampwood termite Zootermopsis angusticollis hindgut of the Pacific dampwood termite Zootermopsis angusticollis Termite Gastrointestinal tract Gut Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Symbiotic Zootermopsis angusticollis Singles None Host, Termite gut Motile Dinitrogen-fixing, Hydrogen metabolizer, Symbiotic, Acetogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 W14359 W14359 Escherichia coli O157:H7 str. TW14359 Gi03269 Genome incomplete Public Washington Univ WashU http://genome.wustl.edu/info/contact_info.cgi Medical, Human Pathogen 544404 30045 004032_GCAT 0 0 0 0 Sanger, 454 USA spinach during the E. coli outbreak in 2006 2006 spinach during the E. coli outbreak in 2006 Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Hemorrhagic colitis Host, Food Motile Archaea Crenarchaeota Thermoprotei Desulfurococcales Desulfurococcaceae Acidilobus Acidilobus saccharovorans ARCHAEAL Acidilobus saccharovorans 345-15 345-15 Yes Gi03271 Genome incomplete Public Center of Bioengineering Bonch-Osmolovskaya EA elizaveta.bo@gmail.com Biotechnological 666510 39927 004033_GCAT 244608 0 0 0 0 Russia acidic hot springs of Kamchatka Peninsula Russia acidic hot springs of Kamchatka Peninsula Anaerobe Coccus-shaped Hyperthermophile 3.5 - 4.0 gram- Free living None Hot spring, Fresh water Nonmotile Acidophile Archaea Crenarchaeota Thermoprotei Desulfurococcales Desulfurococcaceae Fervidococcus ARCHAEAL Fervidococcus fontis Gi03272 Genome incomplete Public Center of Bioengineering Bonch-Osmolovskaya EA elizaveta.bo@gmail.com Biotechnological 441208 004034_GCAT 223945 0 0 0 0 Russia acidic hot springs of Kamchatka Peninsula Russia acidic hot springs of Kamchatka Peninsula Anaerobe Hyperthermophile gram- Free living None Hot spring Archaea Euryarchaeota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus sibiricus ARCHAEAL Thermococcus sibiricus MM 739 MM 739 DSM 12597 Yes Gc01009 Gi03273 Genome Complete and Published Public Center of Bioengineering Bonch-Osmolovskaya EA elizaveta.bo@gmail.com TSIB 2009-06-29 Appl Environ Microbiology 75, 4580-4588 Biotechnological 604354 34531 004035_GCAT 46577 0 NC_012883 Complete Level 6: Finished 1845 2107 1 0 38.4 Russia well of the never flooded oil-bearing Jurassic horizon of a high temperature Samoltor oil reservoir; Russia, Western Siberia Russia oil wells of the Samotlor oil reservoir Anaerobe Coccus-shaped Nonsporulating Hyperthermophile 5.8 - 9.0 gram- Free living None Hot spring 78 Motile Organotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. Ch1-1 BACTERIAL Burkholderia sp. Ch1-1 Ch1-1 Gi03275 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 243261 004037_GCAT 93571 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Soil Motile PAH-degrading Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. Cs1-4 BACTERIAL Burkholderia sp. Cs1-4 Cs1-4 Gi03276 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 243259 004038_GCAT 93743 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Host, Rhizosphere, Rhizosphere-colonizing Motile PAH-degrading Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium ciceri BACTERIAL Mesorhizobium ciceri bv biserrulae WSM1271 WSM1271 biserrulae HAMBI 2942, LMG 23838 Yes Gi03277 Genome incomplete Public DOE Joint Genome Institute DOE, Isolation Bruce D microbes@cuba.jgi-psf.org 278148 004039_GCAT 101371 0 In progress 0 0 62.7 USA 5 km before Bottida, Sardinia Howieson growth in 96 hrs on 0.5LA April 29 1993 Italy 5 km before Bottida, Sardinia 40.382709 9.012008 Biserrula pelecinus L 47093 Aerobe Rod-shaped Mesophile 5.5-8.0 0.5um 1um gram- Symbiotic Endosymbiotic intracellular Mutualistic Biserrula pelecinus L 47093 None Rhizosphere, Host, Root nodule, Soil Motile Nitrogen fixation Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Phyllobacteriaceae Mesorhizobium BACTERIAL Mesorhizobium australicum WSM2073 WSM2073 Yes Gi03278 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 536018 004040_GCAT 101371 0 0 0 0 USA Antonio's farm, Antonio Rd, Northam, Western Australia Nandasena has symbiosis island from WSM1271 August 2000 Australia Antonio's farm, Antonio Rd, Northam, Western Australia -31.530408 116.947875 Biserrula pelecinus L 47093 Aerobe Rod-shaped Mesophile 5-8 0.5um 1um gram- Symbiotic Endosymbiotic intracellular Mutualistic Biserrula pelecinus L 47093 None Host, Rhizosphere, Root nodule Motile Nitrogen fixation Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium opportunistum BACTERIAL Mesorhizobium opportunistum WSM2075 WSM2075 LMG 24607 Gi03279 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 536019 33861 004041_GCAT 101371 0 0 0 0 USA Antonio's farm, Antonio Rd, Northam, Western Australia Nandasena has symbiosis island from WSM1271, but ineffective for N fixation August 2000 Australia Antonio's farm, Antonio Rd, Northam, Western Australia -31.530408 116.947875 Biserrula pelecinus L Aerobe Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Biserrula pelecinus L None Root nodule, Rhizosphere, Host Motile Nitrogen fixation Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Alicycliphilus BACTERIAL Alicycliphilus denitrificans BC BC Gi03280 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 179636 004042_GCAT 39244 0 0 0 0 USA Facultative Mesophile gram- Free living None Archaea Crenarchaeota Thermoprotei Desulfurococcales Desulfurococcaceae Desulfurococcus ARCHAEAL Desulfurococcus fermentans DSM 16532 DSM 16532 VKM V-2316, JCM 13383, DSM 16532 Yes Gi03281 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 228748 004043_GCAT 84894 0 Awaiting DNA 0 0 0 USA Freshwater hot spring; Russia, Kamchatka Peninsula, Uzon caldera Russia 15879224 Uzon caldera, Kamchatka, Russia 54.520524 159.968948 Anaerobe Coccus-shaped Hyperthermophile 6 1-4u gram- Free living None Fresh water Motile Organotroph Archaea Crenarchaeota Thermoprotei Desulfurococcales Desulfurococcaceae Desulfurococcus ARCHAEAL Desulfurococcus mobilis DSM 2161 DSM 2161 ATCC 35582, DSM 2161 Yes Gi03282 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 2274 004044_GCAT 930 0 Awaiting DNA 0 0 0 USA Acidic water from solfataric field; Iceland Iceland Anaerobe Coccus-shaped Hyperthermophile gram- Free living None Fresh water 85 Motile Organotroph Archaea Crenarchaeota Thermoprotei Desulfurococcales Desulfurococcaceae Desulfurococcus ARCHAEAL Desulfurococcus amylolyticus DSM 3822 DSM 3822 DSM 3822 Yes Gi03283 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 94694 004045_GCAT 73260 0 Awaiting DNA 0 0 0 USA Hot spring; USSR, Kamchatka Russia thermal springs of Kamchatka Anaerobe Coccus-shaped Hyperthermophile gram- Free living None Fresh water 90 Motile Organotroph Bacteria Spirochaetes Spirochaetes (class) Spirochaetales BACTERIAL Sphaerochaeta pleomorpha Grapes Grapes Gi03284 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 399320 004046_GCAT 0 In progress 0 0 0 USA "anaerobic, dechlorinating enrichment cultures" anaerobic, dechlorinating enrichment cultures Anaerobe Mesophile gram- Free living None Bacteria Spirochaetes Spirochaetes (class) Spirochaetales BACTERIAL Sphaerochaeta globus Buddy Buddy Gi03285 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 399320 004047_GCAT 0 In progress 0 0 0 USA "anaerobic, dechlorinating enrichment cultures" anaerobic, dechlorinating enrichment cultures Anaerobe Mesophile gram- Free living None Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Hyphomonadaceae Hirschia Hirschia baltica BACTERIAL Hirschia baltica ATCC 49814 ATCC 49814 Hirschia baltica ATCC 49814 ATCC 49814, DSM 5838, IFAM 1418 Yes Gc01064 Gi03286 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 2009-07-17 Unpublished Biotechnological, Bioremediation 582402 33191 004048_GCAT 43442 0 NC_012982 Complete Level 6: Finished 3455 3201 1 1 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Marine Motile Archaea Crenarchaeota Thermoprotei Desulfurococcales Desulfurococcaceae Stetteria ARCHAEAL Stetteria hydrogenophila Gi03287 Genome incomplete Public DOE Joint Genome Institute DOE Anderson I IJAnderson@lbl.gov Tree of Life, Biotechnological 52001 004049_GCAT 914 0 0 0 0 USA "Shallow hydrothermal vents off Palaeochori Bay, Milos, Greece" Greece Shallow hydrothermal vents off Palaeochori Bay, Milos, Greece 36.674912 24.51367 Anaerobe Coccus-shaped Hyperthermophile 6 gram- Free living None Fresh water, Hydrothermal vent 85 Heterotroph Bacteria Proteobacteria Gammaproteobacteria Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus ferrooxidans BACTERIAL Acidithiobacillus ferrooxidans ATCC 53993 ATCC 53993 Acidithiobacillus ferrooxidans ATCC 53993 ATCC 53993 Gc00855 Gi03288 Genome Complete and Published Public DOE Joint Genome Institute DOE Borole AP borolea@ornl.gov Lferr 2008-09-05 Unpublished Bioleaching, Environmental, Bioremediation 380394 16689 004050_GCAT 346428 642555101 NC_011206 Complete 2885 2951 1 0 58.9 USA derived from the type strain DSM 2705 derived from the type strain DSM 2705 Obligate anaerobe Spiral-shaped Nonsporulating Mesophile 1.3 - 4.0 gram- Free living None Acid mine drainage Motile Iron oxidizer, Acidophile Obligate chemoautolithotroph Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio fructosovorans BACTERIAL Desulfovibrio fructosovorans JJ JJ Gi03289 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bioremediation, Environmental, Biotechnological 596151 004051_GCAT 10476 0 0 0 0 USA Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Mud 37 Motile Sulfate reducer Eukaryota Basidiomycota Agaricomycetes Boletales Rhizopogonaceae Rhizopogon Rhizopogon salebrosus EUKARYAL Rhizopogon salebrosus TDB-379 TDB-379 Gi03290 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 176626 004052_GCAT 0 In progress 0 0 0 Sanger USA Eukaryota Basidiomycota Agaricomycetes Polyporales Coriolaceae Ceriporiopsis EUKARYAL Ceriporiopsis subvermispora B B Gi03291 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bioenergy, Biotechnological, Biofuels 42742 004053_GCAT 0 In progress 0 0 0 Sanger USA Lignin degrader Eukaryota Annelida Polychaeta Terebellida Alvinellidae Paralvinella EUKARYAL Paralvinella sulfincola polychaete worm Ge00293 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 36109 004054_GCAT 0 0 0 0 USA Thermophile Hydrothermal vent Eukaryota Bacillariophyta Coscinodiscophyceae Thalassiosiraceae Thalassiosira Thalassiosira rotula EUKARYAL Thalassiosira rotula polychaete worm Gi03292 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Environmental, Carbon cycle 49265 004055_GCAT 0 0 0 0 USA Eukaryota Arthropoda Insecta Coleoptera Curculionidae Dendroctonus EUKARYAL Dendroctonus frontalis southern pine beetle Ge00294 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 77161 004056_GCAT 0 0 0 0 USA Eukaryota Chlorophyta Trebouxiophyceae Botryococcaceae Botryococcus Botryococcus braunii EUKARYAL Botryococcus braunii Ge00295 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Bioenergy 38881 004057_GCAT 0 0 0 0 USA Eukaryota Streptophyta Liliopsida Alismatales Araceae Spirodela EUKARYAL Spirodela polyrrhiza great duckweed Gi03293 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural, Bioenergy, Environmental, Carbon cycle, Biotechnological 29656 004058_GCAT 0 0 0 0 USA Eukaryota Streptophyta Liliopsida Alismatales Zosteraceae Zostera Zostera marina EUKARYAL Zostera marina seagrass Gi03294 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 29655 004059_GCAT 0 0 0 0 USA Eukaryota Streptophyta Coniferopsida Coniferales Pinaceae Pinus EUKARYAL Pinus taeda Gi03295 Genome-Regions incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural, Ethanol production, Energy production, Biotechnological 3352 004060_GCAT 0 2100000 0 0 BAC clones USA Eukaryota Streptophyta Coniferopsida Coniferales Pinaceae Pinus EUKARYAL Pinus taeda Ge00296 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural, Ethanol production, Energy production, Biotechnological 3352 004061_GCAT 0 0 0 0 USA Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Pichia EUKARYAL Pichia angusta NCYC 495 leu1.1 NCYC 495 leu1.1 ATCC MYA-335 Gi03296 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bioenergy, Ethanol production, Energy production, Biotechnological 4905 004062_GCAT 0 0 0 0 BAC clones USA Thermophile Sugars fermentor Xylose fermenting, Cellobiose-degrading Eukaryota Chrysophyceae Chromulinales Paraphysomonadaceae Paraphysomonas Paraphysomonas imperforata EUKARYAL Paraphysomonas imperforata Gi03297 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 37642 004063_GCAT 0 0 0 0 BAC clones USA Eukaryota Synurophyceae Ochromonadales Ochromonadaceae Ochromonas EUKARYAL Ochromonas Gi03298 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 2985 004064_GCAT 0 0 0 0 BAC clones USA Eukaryota Synurophyceae Ochromonadales Ochromonadaceae Spumella EUKARYAL Spumella Gi03299 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 89043 004065_GCAT 0 0 0 0 BAC clones USA Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium confusum DSM 44384 DSM 44384 DSM 44384 Yes Gi03300 Genome incomplete Public IGS, Bielefeld Univ Bielefeld Univ Tauch, A Andreas.Tauch@genetik.uni-bielefeld.de http://www.cebitec.uni-bielefeld.de/~tauch Medical 71254 004066_GCAT 13499 0 0 0 0 Germany human clinical specimens human clinical specimens Homo sapiens Blood Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Blood, Host 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium confusum BL 8171, DSM 44353 BL 8171, DSM 44353 CCUG 33651, DSM 44353 Yes Gi03313 Genome incomplete Public IGS, Bielefeld Univ Bielefeld Univ Tauch, A Andreas.Tauch@genetik.uni-bielefeld.de http://www.cebitec.uni-bielefeld.de/~tauch Medical 108486 004080_GCAT 71101 0 0 0 0 Germany Blood culture from 4-yr-old boy with acute lymphatic leukaemia, in Karlstad, Sweden Sweden Blood culture from 4-yr-old boy with acute lymphatic leukaemia, in Karlstad, Sweden 59.378217 13.504219 Homo sapiens Male 4 years old Patient with acute lymphatic leukaemia Blood Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Blood, Host 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella novicida BACTERIAL Francisella tularensis novicida FTE FTE Gi03301 Genome incomplete Public Los Alamos National Laboratory, BioHealthBase Brettin T brettin@lanl.gov Biothreat, Medical, Human Pathogen 545422 30717 004067_GCAT 303616 642791609 NZ_ABSS00000000 Draft 13x 1543 1423 32 USA nonvirulent strain Aerobe Rod-shaped Nonsporulating Mesophile Halophile gram- Free living Singles Tularemia Fresh water, Host Nonmotile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema Treponema pallidum BACTERIAL Treponema pallidum pallidum Nichols Nichols Treponema pallidum subsp. pallidum str. Nichols Gi03302 Genome incomplete Public BCM-HGSC NIH-NIAID Weinstock G gweinsto@watson.wustl.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Medical, Human Pathogen 243276 30655 004068_GCAT 147951 0 0 0 0 USA Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Host Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis B-SA B-SA Francisella tularensis B-SA Gi03303 Genome incomplete Public BCM-HGSC Petrosino J jpetrosi@bcm.tmc.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Animal Pathogen, Medical, Human Pathogen, Biothreat 545771 30631 004069_GCAT 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Septicemia, Pneumonia Host, Fresh water Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia multivorans BACTERIAL Burkholderia multivorans CGD2 CGD2 Burkholderia multivorans CGD2 Gi03304 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Nelson K Kenelson@jcvi.org Medical, Human Pathogen 513052 30581 004070_GCAT 643886021 NZ_ACFC00000000 Draft JCVI-gbv2-v1.0 14.5x 37 6554 6653 66 Sanger, 454 USA chronic granulomatous disease patient at the NIH clinical center Dr. Steven Holland, NIAID Bethesda USA chronic granulomatous disease patient at the NIH clinical center Homo sapiens Patient with Chronic granulomatous disease Oral Aerobe Rod-shaped Mesophile gram- Free living Opportunistic infection Host Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia multivorans BACTERIAL Burkholderia multivorans CGD1 CGD1 Burkholderia multivorans CGD1 Gi03305 Genome incomplete Public J. Craig Venter Institute NIH-NIAID JCVI Medical, Human Pathogen 513051 30579 004071_GCAT 643886020 NZ_ACFB00000000 Draft JCVI-gbv1-v1.0 14x 34 6621 6572 66 Sanger, 454 USA chronic granulomatous disease patient at the NIH clinical center in Bethesda, MD Dr. Steven Holland, NIAID Bethesda USA Bethesda, MD 38.989977 -77.121382 Homo sapiens Patient with Chronic granulomatous disease Aerobe Rod-shaped Mesophile gram- Free living Opportunistic infection Host Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia multivorans BACTERIAL Burkholderia multivorans ATCC 17616 ATCC 17616 Burkholderia multivorans ATCC 17616 ATCC 17616 Gc00840 Genome Complete and Published Public Tohoku Univ DOE BMULJ 2008-06-03 Unpublished Medical, Human Pathogen 395019 19401 004072_GCAT 300050 642555111 NC_010804, NC_010801, NC_010805 Complete 6820 6193 3 1 66.7 454, Sanger Japan Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Cepacia syndrome Host 37 Motile Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium BACTERIAL Enterococcus faecium E1679 E1679 Enterococcus faecium E1679 Gi03306 Genome incomplete Public Univ Medical Center Utrecht Medical, Human Pathogen 546340 30569 004073_GCAT 0 0 0 0 Netherlands vascular catheter tip in 1998 in Brazil 1998 Brazil vascular catheter tip in 1998 in Brazil Facultative Coccus-shaped Mesophile Halotolerant gram+ Free living Chains, Pairs Opportunistic infection Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella melitensis BACTERIAL Brucella melitensis ATCC 23457 ATCC 23457 ATCC 23457 Gc00968 Gi03307 Genome Complete and Published Public Virginia Bioinformatics Institute, Los Alamos National Laboratory Brettin T brettin@lanl.gov BMEA 2009-03-25 Unpublished Animal Pathogen, Medical, Human Pathogen, Biothreat 546272 30561 004074_GCAT 643692012 NC_012441, NC_012442 Complete Level 6: Finished 1185 1166 2 0 57 USA human blood and bone marrow samples Homo sapiens Blood Aerobe Nonsporulating Mesophile gram- Free living Chains, Pairs, Singles Brucellosis Host Nonmotile Facultative intracellular, Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12- MG1655 K12- MG1655 Gr00001 Gi03308 Resequencing incomplete Public Illumina Inc. Medical 511145 30551 SRS000537 004075_GCAT 0 0 0 50.8 Illumina USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora 37 Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Orientalis PEXU2 PEXU2 Orientalis Yersinia pestis biovar Orientalis str. PEXU2 Gi03309 Genome incomplete Public Los Alamos National Laboratory Brettin T brettin@lanl.gov Animal Pathogen, Medical, Human Pathogen, Biothreat 547046 30509 004076_GCAT 638341243 NZ_ACNS00000000 Draft 13x 5 4770 4780 47 Sanger USA lacks the Low-Calcium-Response plasmid (pLcr/pCD) Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic and Pneumonic plague Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Orientalis India 195 India 195 Orientalis Gi03310 Genome incomplete Public Los Alamos National Laboratory, ERIC Brettin T brettin@lanl.gov Animal Pathogen, Medical, Human Pathogen, Biothreat 547047 30507 004077_GCAT 0 NZ_ACNR00000000 Draft 11x 33 4719 4792 47 Sanger USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic and Pneumonic plague Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Medievalis Harbin 35 Harbin 35 Medievalis Gi03311 Genome incomplete Public Los Alamos National Laboratory, ERIC Animal Pathogen, Medical, Human Pathogen, Biothreat 547048 30505 004078_GCAT 0 0 0 0 Sanger USA human isolate from China China Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic and Pneumonic plague Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Nepal516 Nepal516 Gi03312 Genome incomplete Public Los Alamos National Laboratory, ERIC Animal Pathogen, Biothreat, Human Pathogen, Medical 377628 30503 004079_GCAT 160633 0 NZ_ACNQ00000000 Draft 16x 23 4629 4626 47 Sanger USA soil sample from Nepal soil sample from Nepal Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic and Pneumonic plague Host Motile Pathogen Heterotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium hansenii C-138, DSM 45109 C-138, DSM 45109 DSM 45109, CCUG 53252, CIP 108444 Yes Gi03314 Genome incomplete Public IGS, Bielefeld Univ Bielefeld Univ Tauch, A Andreas.Tauch@genetik.uni-bielefeld.de http://www.cebitec.uni-bielefeld.de/~tauch Medical 394964 004081_GCAT 259065 0 0 0 0 Germany a 77-year-old patient with human liposarcoma a 77-year-old patient with human liposarcoma Homo sapiens 77 years old Patient with human liposarcoma Blood Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Blood, Host 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium imitans DSM 44264 DSM 44264 CCUG 36877, NBRC 100416, IFO 16163, NCTC 13015, NBRC 16163, DSM 44264 Yes Gi03315 Genome incomplete Public IGS, Bielefeld Univ Bielefeld Univ Tauch, A Andreas.Tauch@genetik.uni-bielefeld.de http://www.cebitec.uni-bielefeld.de/~tauch Medical 156978 004082_GCAT 0 0 0 0 Germany Human throat from a 5-month-old boy of a Romanian family traveling via Ukraine to Poland Poland Human throat from a 5-month-old boy of a Romanian family traveling via Ukraine to Poland Homo sapiens Male 5-month-old Blood Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Blood, Host 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium macginleyi JCL-2,.DSM 44284 JCL-2,.DSM 44284 CCUG 32361, CIP 104099, ATCC 51787, DSM 44284 Yes Gi03316 Genome incomplete Public IGS, Bielefeld Univ Bielefeld Univ Tauch, A Andreas.Tauch@genetik.uni-bielefeld.de http://www.cebitec.uni-bielefeld.de/~tauch Medical 38290 004083_GCAT 238791 0 0 0 0 Germany Human corneal ulcer Human corneal ulcer Homo sapiens Blood Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host, Blood 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium mucifaciens DSM 44265 DSM 44265 DSM 44265, CCUG 36878, CIP 105129 Yes Gi03317 Genome incomplete Public IGS, Bielefeld Univ Bielefeld Univ Tauch, A Andreas.Tauch@genetik.uni-bielefeld.de http://www.cebitec.uni-bielefeld.de/~tauch Medical 57171 004084_GCAT 72264 0 0 0 0 Germany Human blood culture Human blood culture Homo sapiens Blood Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Blood, Host 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium riegelii DSM 44326 DSM 44326 DSM 44326 Yes Gi03318 Genome incomplete Public IGS, Bielefeld Univ Bielefeld Univ Tauch, A Andreas.Tauch@genetik.uni-bielefeld.de http://www.cebitec.uni-bielefeld.de/~tauch Medical 156976 004085_GCAT 69866 0 0 0 0 Germany Urine of 43 year-old female from Switzerland Switzerland Urine of 43 year-old female from Switzerland Homo sapiens Female 43 years old Blood Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host, Blood 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium singulare DSM 44357 DSM 44357 IBS B52218, DSM 44357, CCUG 37330, IFO 16162, CIP 105491, NBRC 1616 Yes Gi03319 Genome incomplete Public IGS, Bielefeld Univ Bielefeld Univ Tauch, A Andreas.Tauch@genetik.uni-bielefeld.de http://www.cebitec.uni-bielefeld.de/~tauch Medical 161899 004086_GCAT 13476 0 0 0 0 Germany Human semen from Strasbourg, France France Human semen from Strasbourg, France 48.582933 7.743749 Homo sapiens Male Blood Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host, Blood 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium tuscaniense DSM 45101 DSM 45101 CIP 109389, CCUG 51321, DSM 45101, ATCC BAA-1141 Yes Gi03320 Genome incomplete Public IGS, Bielefeld Univ Bielefeld Univ Tauch, A Andreas.Tauch@genetik.uni-bielefeld.de http://www.cebitec.uni-bielefeld.de/~tauch Medical 302449 004087_GCAT 109452 0 0 0 0 Germany Human blood of a 85 year old woman affected by endocarditis, Italy Italy Human blood of a 85 year old woman affected by endocarditis, Italy Homo sapiens Female 85 years old Patient with endocarditis Blood Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host, Blood 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium ureicelerivorans DSM 45051 DSM 45051 CCUG 53377, DSM 45051 Yes Gi03321 Genome incomplete Public IGS, Bielefeld Univ Bielefeld Univ Tauch, A Andreas.Tauch@genetik.uni-bielefeld.de http://www.cebitec.uni-bielefeld.de/~tauch Medical 401472 004088_GCAT 357432 0 0 0 0 Germany Blood culture of a patient with septicemia in Germany Germany Blood culture of a patient with septicemia in Germany Homo sapiens Patient with septicemia Blood Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host, Blood 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Tenericutes Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma BACTERIAL Acholeplasma brassicae 0502, ATCC 49388 0502, ATCC 49388 ATCC 49388 Yes Gi03322 Genome incomplete Public Max Planck Institute Kube M kube@molgen.mpg.de Biotechnological 61635 004089_GCAT 103238 641522601 1215 0 35.5 Germany surfaces of broccoli 7981098 surfaces of broccoli Facultative Coccus-shaped Mesophile gram- Free living None Soil, Host, Wastewater 30 Nonmotile Bacteria Tenericutes Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma BACTERIAL Acholeplasma palmae J233, ATCC 49389 J233, ATCC 49389 ATCC 49389 Yes Gi03323 Genome incomplete Public Max Planck Institute Kube M kube@molgen.mpg.de Biotechnological 38986 004090_GCAT 15688 641522601 1610 0 30 Germany crown tissues of the coconut palm 7981098 crown tissues of the coconut palm Facultative Coccus-shaped Mesophile gram- Free living None Soil, Host, Wastewater 30 Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria sicca BACTERIAL Neisseria sicca ATCC 29256 ATCC 29256 Neisseria sicca ATCC 29256 NRL 30016, CDN 16, ATCC 49276, ATCC 29256 Yes Gi03324 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu http://www.genome.wustl.edu/info/contact_info.cgi Medical, Human Microbiome Project (HMP) 547045 30481 004091_GCAT 607 0 ACKO00000000, NZ_ACKO00000000 Complete 18.5x 61 2830 3718 0 454-FLX USA pharyngeal mucosa of a healthy man ATCC 29256 pharyngeal mucosa of a healthy man Homo sapiens Male Healthy Airways Nasopharynx Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs None Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides coprophilus BACTERIAL Bacteroides coprophilus DSM 18228 DSM 18228 Bacteroides coprophilus DSM 18228 DSM 18228, JCM 18818 Yes Gi03325 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi BACCOPRO Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 547042 30371 004092_GCAT 114 643886197 NZ_ACBW00000000, ACBW00000000 Draft 270351 Newbler 2.0.00.20 16.4X 284 3855 3906 45 454-FLX USA normal human gut microbial flora DSM 18228 normal human gut microbial flora Homo sapiens Healthy Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Human intestinal microflora, Human fecal, Host Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis BACTERIAL Bacillus thuringiensis sv pulsiensis BGSC 4CC1 sv pulsiensis BGSC 4CC1 pulsiensis Bacillus thuringiensis serovar pulsiensis BGSC 4CC1 Gi03326 Genome incomplete Public Naval Medical Research Center Read TD Agricultural, Insect Pathogen, Biotechnological 527028 29731 004093_GCAT 643886093 NZ_ACNJ00000000 Draft 19.5x 258 5976 6030 34 USA grain field in Pakistan Pakistan grain field in Pakistan Facultative Rod-shaped Sporulating Mesophile gram+ Free living Chains Sotto disease Soil, Plant surface Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei BACTERIAL Burkholderia mallei PRL7 PRL7 Gi03327 Genome incomplete Public J. Craig Venter Institute NIH-NIAID Animal Pathogen, Medical, Human Pathogen, Biothreat 536228 29575 004094_GCAT 0 0 0 0 USA Aerobe Rod-shaped Mesophile gram- Free living Singles Glanders, Pneumonia Host Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Candidatus Accumulibacter Candidatus Accumulibacter phosphatis BACTERIAL Candidatus Accumulibacter phosphatis Type IIA UW-1 UW-1 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 Gc01096 Gi03328 Metagenome Complete and Published Public DOE Joint Genome Institute DOE Hugenholtz P PHugenholtz@lbl.gov 2009-09-01 Unpublished Bioremediation, Wastewater treatment, Biotechnological 522306 29435 004095_GCAT 0 NC_013194 Complete Level 6: Finished Prodigal, GenePRIMP 5058 4532 1 3 64 Sanger, 454 USA enhanced biological phosphorus removal (EBPR) wastewater treatment bioreactor 6/30/2004 USA enhanced biological phosphorus removal (EBPR) wastewater treatment bioreactor 43.078418 -89.386482 elevation: 263m Aerobe Rod-shaped Mesophile gram- Free living None Sludge, Sediment Acetate oxidizer Polyphosphate-accumulating, EBPR Chemoheterotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas testosteroni BACTERIAL Comamonas testosteroni CNB1 CNB1 Comamonas testosteroni CNB1 Gi03330 Genome incomplete Public The Institute of Microbiology Biotechnological 543891 29203 004097_GCAT 87769 0 0 0 0 Sanger China activated sludge from a chemical plant activated sludge from a chemical plant Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Sludge Motile Surfactant-degrading Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 TW14359 TW14359 Gc01066 Gi03331 Genome Complete and Published Public Univ of Washington Miller SI millersi@u.washington.edu ECSP 2009-07-23 Infect. Immun. 77, 3713-21 Medical, Human Pathogen 544404 30045 004098_GCAT 0 NC_013008 Complete Level 6: Finished 5528 5485 1 1 50 USA spinach in the western United States in 2006 2006 USA spinach in the western United States in 2006 Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea, Hemorrhagic colitis Host, Human intestinal microflora 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12 DH10B K12 DH10B Gi03332 Genome incomplete Public J. Craig Venter Institute JCVI Medical 316385 30003 004099_GCAT 270795 0 0 0 0 USA derived from DH10 (which was derived from MC1061 which in turn was derived from M182) Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora 37 Motile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micrococcaceae Micrococcus Micrococcus luteus BACTERIAL Micrococcus luteus NCTC 2665 NCTC 2665 Micrococcus luteus NCTC 2665 NCTC 2665, CN 3475, DSM 20030, ATCC 15307 Yes Gi03333 Genome incomplete Public Genoscope Bioremediation, Environmental, Biotechnological 465515 30571 004100_GCAT 641736168 0 0 72.9 France Aerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Tetrads None Soil Nonmotile Metal resistant Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Wolbachia Wolbachia endosymbiont of Diaphorina citri BACTERIAL Wolbachia sp (Diaphorina citri) (Diaphorina citri) Wolbachia endosymbiont of Diaphorina citri Gi03334 Genome incomplete Public Univ of Florida, BCM-HGSC Weinstock G gweinsto@watson.wustl.edu Biotechnological 116598 29451 004101_GCAT 171927 0 In progress 1063 760 35 Sanger USA Aerobe Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Diaphorina citri None Host, Endosymbiont Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pullorum BACTERIAL Helicobacter pullorum NCTC 12824 NCTC 12824 Helicobacter pullorum NCTC 12824 ATCC 51801, NCTC 12824, CCUG 33837 Gi03337 Genome incomplete Public Univ of Birmingham, BCM-HGSC Weinstock G gweinsto@watson.wustl.edu Medical, Human Pathogen 552535 30721 004105_GCAT 10982 0 0 0 0 United Kingdom Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastroenteritis Host Motile Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium BACTERIAL Enterococcus faecium U0317 U0317 Enterococcus faecium U0317 Gi03362 Genome incomplete Public Univ Medical Center Utrecht Medical, Human Pathogen 547468 30675 004131_GCAT 0 0 0 0 Netherlands urinary tract infection of a hospitalized patient in 2005 in Utrecht, the Netherlands. 2005 Netherlands urinary tract infection of a hospitalized patient in 2005 in Utrecht, the Netherlands. 52.091262 5.122748 Homo sapiens Urogenital tract Urine Urinary tract Facultative Coccus-shaped Mesophile Halotolerant gram+ Free living Chains, Pairs Opportunistic infection Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus equi BACTERIAL Streptococcus equi zooepidemicus MGCS10565 MGCS10565 Streptococcus equi subsp. zooepidemicus MGCS10565 MGCS10565, ATCC BAA1716, CDC 5058 Gc00845 Genome Complete and Published Public TMHS Musser JM Sez 2008-08-11 PLoS ONE 3(8):e3026 Animal Pathogen, Swine Pathogen, Medical, Cattle Pathogen 552526 30781 004106_GCAT 323569 642555163 NC_011134 Complete 2024 1965 1 0 41 USA throat of a patient with nephritis iagnosed during an epidemic in the state of Minas Gerais, Brazil Brazil Homo sapiens Airways Throat swab Upper respiratory tract Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Opportunistic infection Host 37 Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium avium BACTERIAL Mycobacterium avium avium ATCC 25291 ATCC 25291 Mycobacterium avium subsp. avium ATCC 25291 ATCC 25291 Yes Gi03338 Genome incomplete Public Univ of Minnesota, McGill Univ Kapur V http://www.cvm.umn.edu/departments/vpb/faculty/kapur.htm Animal Pathogen, Medical, Human Pathogen 553481 30909 004107_GCAT 0 NZ_ACFI00000000 Draft 4857 0 68 Canada liver of a hen liver of a hen Hen Liver Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host 37 Nonmotile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Erwinia Erwinia aphidicola BACTERIAL Erwinia aphidicola DSM 19347 DSM 19347 Erwinia aphidicola DSM 19347 IAM 14479, GTC 1688, DSM 19347 Yes Gi03339 Genome incomplete Public Univ of Almeria 553484 30779 004108_GCAT 0 0 0 0 Spain hindgut of the pea aphid hindgut of the pea aphid pea aphid Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Motile Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia multivorans BACTERIAL Burkholderia multivorans CGD2M CGD2M Burkholderia multivorans CGD2M Gi03341 Genome incomplete Public J. Craig Venter Institute NIH-NIAID JCVI Medical, Human Pathogen 513053 30745 004110_GCAT 643886018 NZ_ACFD00000000 Draft JCVI-gbv2-v1.0 17.3x 27 6564 6646 66 Sanger, 454 USA Chronic granulomatous disease patient at the NIH clinical center Dr. Steven Holland, NIAID Bethesda USA Chronic granulomatous disease patient at the NIH clinical center Homo sapiens Patient with Chronic granulomatous disease Aerobe Rod-shaped Mesophile gram- Free living Opportunistic infection Host Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis H37Ra H37Ra Mycobacterium tuberculosis H37Ra ATCC 25177 Gi03342 Genome incomplete Public Beijing Genomics Institute MtubH Medical, Human Pathogen 419947 18649 004111_GCAT 103703 231446 641736240 NZ_AAYK00000000 Draft 4326 4540 1 0 65.6 China derived from the original human-lung H37 isolate in 1934 1934 derived from the original human-lung H37 isolate in 1934 Homo sapiens Airways Lung Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host 37 Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium glucuronolyticum BACTERIAL Corynebacterium glucuronolyticum ATCC 51867 ATCC 51867 Corynebacterium glucuronalyticum ATCC 51867 ATCC 51867 Unknown Gi03343 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 548477 30957 SRS000862 004112_GCAT 294 643886147 NZ_ABYP00000000, ABYP01000000 Draft Newbler/1.1.03.24 31.89X 106 2784 2704 59 454-FLX, Illumina USA Healthy human ATCC Healthy human Homo sapiens Healthy Urogenital tract Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host, Urogenital tract 37 Nonmotile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus parasuis BACTERIAL Haemophilus parasuis SH0165 SH0165 5 Haemophilus parasuis SH0165 Gc00908 Gi03346 Genome Complete and Published Public Huazhong Agricultural Univ Chen H chenhch@mail.hzau.edu.cn 2009-01-07 J Bacteriology 181, 1359-1360 Animal Pathogen, Swine Pathogen, Medical 557723 31099 004115_GCAT 643348556 NC_011852 Complete 20102 Consed 6x 2269 2021 1 0 40 454-FLX, Sanger China isolated from a Glasser's disease outbreak farm China Swine Airways Facultative Rod-shaped Mesophile gram- Free living Glasser's disease Host, Swine upper respiratory tract Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 576 576 Burkholderia pseudomallei 576 Gi03347 Genome incomplete Public Los Alamos National Laboratory, J. Craig Venter Institute Brettin T brettin@lanl.gov Animal Pathogen, Medical, Human Pathogen 557724 31091 004116_GCAT 576 642979333 NZ_ACCE00000000 Draft 11.9x 21 7246 7399 68 Sanger USA "49 year old woman suffering from melioidosis, Wellcome Trust Unit in Bangkok, Thailand" Thailand 49 year old woman suffering from melioidosis, Wellcome Trust Unit in Bangkok, Thailand 13.723419 100.476232 Homo sapiens Female 49 years old Patient with melioidosis Aerobe Rod-shaped Mesophile gram- Free living Melioidosis Soil Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter gracilis BACTERIAL Campylobacter gracilis RM3268, ATCC 33236 RM3268, ATCC 33236 Campylobacter gracilis RM3268 ATCC 33236 Yes Gi03348 Genome incomplete Public J. Craig Venter Institute JCVI hmpstrainsjcvi@jcvi.org CAMGR0001 Medical, Human Microbiome Project (HMP) 553220 31021 SRS001043 004117_GCAT 191 151146 0 NZ_ACYG00000000, ACYG00000000 Draft 171901 Newbler 1.1.03.24-64-7 21x 33 2255 2891 46 454 USA human gingival sulcus, USA Mandrell USA Human oral flora Homo sapiens Oral Gingival crevices Obligate anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Chains, Singles None Gingival crevices, Human oral microflora, Host Nonmotile Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter rectus BACTERIAL Campylobacter rectus RM3267, CCUG 20446 RM3267, CCUG 20446 Campylobacter rectus RM3267 CCUG 20446, ATCC 33238 Yes Gi03349 Genome incomplete Public J. Craig Venter Institute JCVI hmpstrainsjcvi@jcvi.org CAMRE Medical, Human Microbiome Project (HMP) 553218 31017 SRS001044 004118_GCAT 192 HOMD: tax_748 643886009 NZ_ACFU00000000, ACFU01000000 Complete 219864 Newbler 1.1.03.24-64-7 26X 33 2500 2971 44.8 USA Human oral flora Mandrell Human oral flora Homo sapiens Oral Gingival crevices Microaerophilic Rod-shaped Nonsporulating Mesophile gram- Free living Chains, Singles Periodontitis Human oral microflora, Host, Gingival crevices Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Gemella Gemella haemolysans BACTERIAL Gemella haemolysans ATCC 10379 ATCC 10379 Gemella haemolysans ATCC 10379 CCUG 37985, ATCC 10379, LMG 18984, NCTC 5414, CIP 101126 Yes Gi03350 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 546270 30487 SRS001049 004119_GCAT 427 0 ACDZ00000000, NZ_ACDZ00000000 Draft Newbler 1.1.03.24-64-7 33X 15 1916 1768 0 454 USA Human oral flora Dewhirst Human oral flora Homo sapiens Oral Facultative Coccus-shaped Mesophile gram+ Free living Pairs, Chains Dental plaque, Opportunistic infection Host, Human oral microflora Motile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium amycolatum BACTERIAL Corynebacterium amycolatum SK46 SK46 Corynebacterium amycolatum SK46 BEI HM-109 Unknown Gi03352 Genome incomplete Public J. Craig Venter Institute JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 553204 31007 SRS001042 004121_GCAT 282 357438 642979306 ABZU01000000, NZ_ABZU00000000 Draft 212647 CA 5.1 20X 48 2513 2241 58 454-FLX USA Human skin Blaser Human skin Homo sapiens Skin Right arm Aerobe Nonsporulating Mesophile gram+ Free living Singles Endocarditis, Sepsis Skin microflora, Host 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Propionibacterium Propionibacterium sp. oral taxon 191 BACTERIAL Propionibacterium sp. Oral Taxon 191 F0233 F0233 Propionibacterium sp. F0233 BEI HM-8 Unknown Gi03353 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 553198 31003 SRS001050 004122_GCAT 682 HOMD: tax_191 0 NZ_ACVN00000000, ACVN00000000 Draft 34x 36 2064 2000 47 454 USA Human oral isolate Blaser Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Opportunistic infection Host, Human skin Nonmotile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis BACTERIAL Gardnerella vaginalis 409-05 409-05 Gardnerella vaginalis 409-05 BEI HM-133 Unknown Gi03354 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 553190 31001 004123_GCAT 424 0 In progress CA 5.1 32X 412 0 0 0 USA Human vaginal flora Wilson/White Human vaginal flora Homo sapiens Female Urogenital tract Vaginal Obligate anaerobe Rod-shaped Mesophile gram+ Free living Bacterial vaginosis Vagina microflora, Host Fastidious Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Atopobium Atopobium rimae BACTERIAL Atopobium rimae ATCC 49626 ATCC 49626 Atopobium rimae ATCC 49626 VPI D140H-11A, ATCC 49626 Yes Gi03355 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Human Microbiome Project (HMP), Medical, Human Pathogen 553184 30999 SRS001045 004124_GCAT 86 643886019 NZ_ACFE00000000, ACFE01000000 Draft 294398 Newbler 1.1.03.24-64-7 43X 9 1626 1600 89 USA human gingival crevice Dewhirst Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Peritonitis Host, Human oral microflora Nonmotile Pathogen Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga sputigena BACTERIAL Capnocytophaga sputigena Capno, ATCC 33612 Capno, ATCC 33612 Capnocytophaga sputigena ATCC 33612 ATCC 33612 Yes Gi03356 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Human Microbiome Project (HMP), Medical, Human Pathogen 553177 30997 SRS000995 004125_GCAT 197 362663 642979305 NZ_ABZV00000000, ABZV01000000 Complete 229445 Newbler 1.1.03.24-64-7 19X 65 2997 2842 38 454-FLX USA periodontal lesion Dewhirst periodontal lesion Homo sapiens Oral Gingival crevices Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Periodontitis Human oral microflora, Host, Gingival crevices Motile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis 98-R604 INH-RIF-EM 98-R604 INH-RIF-EM Mycobacterium tuberculosis '98-R604 INH-RIF-EM' Gi03359 Genome incomplete Public Broad Institute NIH-NIAID Birren B bwb@BROAD.MIT.EDU Human Pathogen, Medical 555461 30979 004128_GCAT 0 NZ_ABVM00000000 Draft 6.9x 136 4331 0 65 USA Patient in KwaZulu-Natal, South Africa South Africa KwaZulu-Natal, South Africa -28.5305539 30.8958242 Homo sapiens Patient Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host 37 Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium hylemonae BACTERIAL Clostridium hylemonae TN-271, DSM 15053 TN-271, DSM 15053 Clostridium hylemonae DSM 15053 CCUG 45367, CIP 106689, DSM 15053, JCM 10539 Yes Gi03361 Genome incomplete Public Washington Univ Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 553973 30369 004130_GCAT 225 35150 642979359 NZ_ABYI00000000, ABYI00000000 Draft 292155 Newbler 2.0.00.20 18.9X GeneMark v3.3, Glimmer2 v2.13 118 3802 3816 48 454-FLX USA human feces collected in Japan DSM 15053S Japan human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Host, Human intestinal microflora Motile Non-Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes HCC23 HCC23 4a Listeria monocytogenes HCC23 Gc00899 Gi03364 Genome Complete and Published Public Mississippi State Univ Lawrence M lawrence@cvm.msstate.edu LMHCC 2008-12-12 Unpublished Animal Pathogen, Cattle Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 552536 29409 004133_GCAT 643348561 NC_011660 Complete 2972 2974 1 0 38 USA channel catfish channel catfish Cattfish Gastrointestinal tract Intestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Chains, Singles Food poisoning, Listeriosis Intestinal microflora, Fresh water, Food, Soil 30 - 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica sv Tennessee CDC07-0191 sv Tennessee CDC07-0191 Tennessee I 6,7,14:z29:- Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191 Gi03366 Genome incomplete Public CDC CDC email-Salmonella@cdc.gov Medical, Human Pathogen 573395 30831 004135_GCAT 0 NZ_ACBF00000000 Draft implicated in a 2006-7 multi-state outbreak associated with peanut butter 20x 4785 0 52 454-GS20 USA epidemiologically-linked patient with a positive urine culture 2006-7 multi-state outbreak associated with peanut butter Homo sapiens Patient with Salmonellosis Urogenital tract Urine Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs Salmonellosis Host 37 Motile Pathogen Chemoorganotroph Eukaryota Chordata Mammalia Primates Hominidae Pongo EUKARYAL Pongo pygmaeus abelii Sumatran orangutan Gi03368 Genome incomplete Public IMB 9601 004137_GCAT 0 AAGM00000000 Draft 0.08x 0 0 0 Sanger Germany Male, cell culture Male, cell culture Eukaryota Chordata Actinopterygii Perciformes Cichlidae Mchenga EUKARYAL Mchenga conophoros Gi03370 Genome incomplete Public DOE Joint Genome Institute DOE 35575 004139_GCAT 0 Draft 0 0 0 USA Eukaryota Chordata Actinopterygii Perciformes Cichlidae Labeotropheus Labeotropheus fuelleborni EUKARYAL Labeotropheus fuelleborni Gi03371 Genome-Survey incomplete Public DOE Joint Genome Institute DOE 57307 004140_GCAT 0 Draft 0 0 0 USA Eukaryota Streptophyta Brassicales Brassicaceae Arabidopsis EUKARYAL Arabidopsis thaliana Gi03373 Genome incomplete Public MPI Weigel D weigel@weigelworld.org 3702 004142_GCAT 0 0 0 0 Germany Eukaryota Ascomycota Eurotiomycetes Onygenales Arthrodermataceae Arthroderma Arthroderma benhamiae EUKARYAL Arthroderma benhamiae Gi03374 Genome incomplete Public HKI-Jena Fungal Genome Initiative (FGI), Medical, Human Pathogen 63400 004143_GCAT 0 Draft 8x 0 0 0 Sanger Germany Soil Skin infection Soil Dermatophyte Eukaryota Arthropoda Insecta Diptera Muscidae Haematobia EUKARYAL Haematobia irritans L. L. horn fly Haematobia irritans Gi03376 Genome incomplete Public Univ of Oklahoma USDA 7368 30973 004145_GCAT 0 0 0 0 USA Eukaryota Microsporidia Nosematidae Nosema Nosema bombycis EUKARYAL Nosema bombycis CQ1 CQ1 Gi03377 Genome incomplete Public Southwest Univ 27978 004146_GCAT 0 0 0 0 Sanger China Parasite, Intracellular Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae AWRI1631 AWRI1631 Saccharomyces cerevisiae AWRI1631 Gi03378 Genome incomplete Public AWRI Saccharomyces Genome Resequencing Project (SGRP) 545124 30553 004147_GCAT 643280123 ABSV00000000 7x 0 0 0 Sanger Australia Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Leptospiraceae Leptospira Leptospira biflexa BACTERIAL Leptospira biflexa Patoc 1 (Paris) Patoc 1 (Paris) Patoc Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' ATCC 23582 Yes Gc00858 Genome Complete and Published Public Monash Univ, Institut Pasteur Adler B Ben.Adler@med.monash.edu.au LEPBI 2008-04-14 PLoSs ONE 3 (2), E1607 Animal Pathogen, Medical 456481 20133 004150_GCAT 266646 642555137 NC_010602 Complete 8x 3880 3770 2 1 39 France "stream water and maintained in the collection of the National Reference Center of Leptospira (Institut Pasteur, Paris, France)" France stream water and maintained in the collection of the National Reference Center of Leptospira (Institut Pasteur, Paris, France) Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Leptospirosis Fresh water, Host, Soil Motile Pathogen Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio piger BACTERIAL Desulfovibrio piger GOR1 GOR1 Desulfovibrio piger GOR1 Unknown Gi03381 Genome targeted Public Human Gut Microbiome Initiative (HGMI), Human Microbiome Project (HMP), Medical 613189 30377 004151_GCAT 325 51535 0 In progress 0 0 0 USA human feces human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Human intestinal microflora, Host Motile Non-Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sp. BACTERIAL Clostridium sp. GM2/1 GM2/1 Unknown Gi03382 Genome targeted Public NIH Human Gut Microbiome Initiative (HGMI), Human Microbiome Project (HMP), Medical 1506 004152_GCAT 905 14269 0 Targeted 0 0 0 454, Sanger USA human feces human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Singles, Pairs None Human intestinal microflora, Host Motile Non-Pathogen Chemoorganotroph Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae UC5 (UCD 612) UC5 (UCD 612) UCD 612 Gi03384 Genome incomplete Public Washington Univ WashU 4932 004154_GCAT 0 6x 0 0 0 USA Sene sake in Kurashi, Japan pre-1974 Japan Sene sake in Kurashi, Japan 34.585013 133.772084 Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae I14 I14 Gi03385 Genome incomplete Public Washington Univ WashU 4932 004155_GCAT 0 6x 0 0 0 USA soil sample in Petrina, Italy in 2002 2002 Italy soil sample in Petrina, Italy in 2002 38.096557 13.407033 Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae I14 I14 Gi03386 Genome incomplete Public Washington Univ WashU 4932 004156_GCAT 0 6x 0 0 0 USA soil sample in Cahokia, Illinois in 2003 2003 USA soil sample in Cahokia, Illinois in 2003 38.564626 -90.178571 Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae Y9 (NRRL y5997) Y9 (NRRL y5997) NRRL y5997 Gi03387 Genome incomplete Public Washington Univ WashU 4932 004157_GCAT 0 6x 0 0 0 USA Ragi (African or finger millet) in Java, Indonesia, pre-1962 pre-1962 Indonesia Ragi (African or finger millet) in Java, Indonesia, pre-1962 Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae PW5 PW5 Gi03388 Genome incomplete Public Washington Univ WashU 4932 004158_GCAT 0 6x 0 0 0 USA Raphia palm wine in Aba, Abia state, Nigeria in 2002 2002 Nigeria Raphia palm wine in Aba, Abia state, Nigeria in 2002 5.116667 7.366667 Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae Y12 Y12 NRRL y12633 Gi03389 Genome incomplete Public Washington Univ WashU 4932 004159_GCAT 0 6x 0 0 0 USA Palm wine in Ivory Coast, Africa, pre-1981. pre-1981 Ivory Coast Palm wine in Ivory Coast, Africa, pre-1981. Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae CLIB324 CLIB324 Gi03390 Genome incomplete Public Washington Univ WashU 4932 004160_GCAT 0 6x 0 0 0 USA baker's yeast used in Saigon, Vietnam and collected in 1996 1996 Vietnam baker's yeast used in Saigon, Vietnam and collected in 1996 10.75918 106.662498 Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae YJM326 YJM326 Gi03391 Genome incomplete Public Washington Univ WashU 4932 004161_GCAT 0 6x 0 0 0 USA clinical sample isolated in the United States, pre-1994 pre-1994 USA clinical sample isolated in the United States, pre-1994 Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae YJM269 YJM269 Gi03393 Genome incomplete Public Washington Univ WashU 4932 004163_GCAT 0 6x 0 0 0 USA Blauer Portugieser grapes in 1954 1954 Blauer Portugieser grapes in 1954 Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae CBS7960 CBS7960 DBVPG7960 Gi03394 Genome incomplete Public Washington Univ WashU 4932 004164_GCAT 0 6x 0 0 0 USA factory in Sao Paulo, Brazil, which produces ethanol from cane-sugar syrup Brazil factory in Sao Paulo, Brazil, which produces ethanol from cane-sugar syrup -23.548943 -46.638818 Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae YJM421 YJM421 Gi03395 Genome incomplete Public Washington Univ WashU 4932 004165_GCAT 0 6x 0 0 0 USA clinical sample from ascites fluid in the United States, pre-1994 pre-1994 USA clinical sample from ascites fluid in the United States, pre-1994 Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae T73 T73 ATCC28383 Gi03396 Genome incomplete Public Washington Univ WashU 4932 004166_GCAT 0 6x 0 0 0 USA red wine prepared from a Monastrel grape in fermentation stage in Alicante, Spain in 1987 1987 Spain red wine prepared from a Monastrel grape in fermentation stage in Alicante, Spain in 1987 38.345203 -0.481006 Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae YJM451 YJM451 Gi03397 Genome incomplete Public Washington Univ WashU 4932 004167_GCAT 0 6x 0 0 0 USA clinical sample isolated in Europe, pre-1994 pre-1994 clinical sample isolated in Europe, pre-1994 Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae YJM653 YJM653 Gi03398 Genome incomplete Public Washington Univ WashU 4932 004168_GCAT 0 6x 0 0 0 USA clinical sample isolated from broncho-alveolar lavage clinical sample isolated from broncho-alveolar lavage Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae YPS1009 YPS1009 Gi03399 Genome incomplete Public Washington Univ WashU 4932 004169_GCAT 0 6x 0 0 0 USA oak tree exudates in Mettler Woods, New Jersey in 2000 2000 USA oak tree exudates in Mettler Woods, New Jersey in 2000 40.737164 -74.563065 Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae NC-02 NC-02 Gi03400 Genome incomplete Public Washington Univ WashU 4932 004170_GCAT 0 2x 0 0 0 USA oak tree exudates in the Smoky Mountains of North Caroline in 2003 2003 USA oak tree exudates in the Smoky Mountains of North Caroline in 2003 Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae Y10 Y10 Gi03401 Genome incomplete Public Washington Univ WashU 4932 004171_GCAT 0 2x 0 0 0 USA coconut in the Phillipines, pre-1973 pre-1973 Phillipines coconut in the Phillipines, pre-1973 Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae T7 T7 Gi03402 Genome incomplete Public Washington Univ WashU 4932 004172_GCAT 0 2x 0 0 0 USA red wine prepared from a Monastrel grape in fermentation stage in Alicante, Spain in 1987 1987 Spain red wine prepared from a Monastrel grape in fermentation stage in Alicante, Spain in 1987 38.345203 -0.481006 Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae YJM428 YJM428 Gi03403 Genome incomplete Public Washington Univ WashU 4932 004173_GCAT 0 2x 0 0 0 USA clinical sample of paracentesis fluid collected in the United States, pre-1994 pre-1994 USA clinical sample of paracentesis fluid collected in the United States, pre-1994 Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae YJM320 YJM320 Gi03404 Genome incomplete Public Washington Univ WashU 4932 004174_GCAT 0 2x 0 0 0 USA clinical sample of blood collected in the United States, pre-1994 pre-1994 USA clinical sample of blood collected in the United States, pre-1994 Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae YJM280 YJM280 Gi03405 Genome incomplete Public Washington Univ WashU 4932 004175_GCAT 0 2x 0 0 0 USA clinical sample from peritoneal fluid collected in the United States, pre-1994 pre-1994 USA clinical sample from peritoneal fluid collected in the United States, pre-1994 Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae CLIB215 CLIB215 Gi03406 Genome incomplete Public Washington Univ WashU 4932 004176_GCAT 0 2x 0 0 0 USA baker's yeast from New Zealand collected in 1994 1994 New Zealand baker's yeast from New Zealand collected in 1994 Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae CLIB382 CLIB382 DBVPG6175, NRRL YB4238, CBS1782, NCYC361 Gi03407 Genome incomplete Public Washington Univ WashU 4932 004177_GCAT 0 2x 0 0 0 USA super-attenuated beer prepared in an Irish brewery pre-1952 pre-1952 Japan super-attenuated beer prepared in an Irish brewery pre-1952 Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae FL100 FL100 ATCC28383 Gi03408 Genome incomplete Public Washington Univ WashU 4932 004178_GCAT 0 2x 0 0 0 USA laboratory strain collected pre-1968 pre-1968 laboratory strain collected pre-1968 Soil Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae WE372 WE372 Gi03409 Genome incomplete Public Washington Univ WashU 4932 004179_GCAT 0 2x 0 0 0 USA wine in Cape Town, South Africa South Africa wine in Cape Town, South Africa -33.922461 18.416619 Soil Eukaryota Ascomycota Eurotiomycetes Onygenales Ajellomycetaceae Ajellomyces EUKARYAL Ajellomyces dermatitidis Gi03410 Genome incomplete Public Washington Univ Clifton S Pathogen 5039 004180_GCAT 0 Draft 3.7x 0 0 0 USA Blastomycosis Eukaryota Chordata Actinopterygii Cyprinodontiformes Poeciliidae Xiphophorus EUKARYAL Xiphophorus maculatus southern platyfish Gi03411 Genome incomplete Public Washington Univ NIH-NHGRI Warren W 8083 004181_GCAT 0 0 0 0 USA Eukaryota Streptophyta Liliopsida Poales Poaceae Zea Zea mays EUKARYAL Zea mays cv. B73 cv. B73 maize Gi03412 Genome incomplete Public Washington Univ DOE, NSF, USDA Clifton S Agricultural 381124 004182_GCAT 0 6x 0 0 0 BAC clones USA Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Pseudonocardiaceae Pseudonocardia BACTERIAL Pseudonocardia sp. CC011120-04 CC011120-04 Gi03413 Genome incomplete Public Washington Univ Clifton S Antibiotic production, Biotechnological 60912 004183_GCAT 0 0 0 0 USA Mesophile gram+ None Host Symbiotic Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus gasseri BACTERIAL Lactobacillus gasseri MV-22 MV-22 Lactobacillus gasseri MV-22 Unknown Gi03414 Genome incomplete Public Broad Institute Broad hmpstrainsbroad@broad.mit.edu Human Microbiome Project (HMP), Medical 559301 31203 004184_GCAT 515 35597 643886189 NZ_ABWH00000000, ABWH00000000 Complete 16.5x 93 1888 1956 34 USA Human vaginal isolate Qiang Xu, Osel Inc. Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus jensenii BACTERIAL Lactobacillus jensenii 1153 1153 Lactobacillus jensenii 1153 Unknown Gi03415 Genome complete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Human Microbiome Project (HMP), Medical 440497 31205 004185_GCAT 524 47914 643886217 ABWG00000000, NZ_ABWG00000000 Complete 23.3x 57 1712 1631 34 USA Human vaginal isolate Qiang Xu, Osel Inc. Human vaginal isolate Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Host, Human vaginal microflora Nonmotile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Pectobacterium Pectobacterium carotovorum BACTERIAL Pectobacterium carotovorum PBR1692 PBR1692 Pectobacterium carotovorum subsp. brasiliensis PBR1692 Gi03416 Genome incomplete Public Univ of Wisconsin Charkowski A amyc@plantpath.wisc.edu Agricultural, Plant Pathogen 558269 31121 004186_GCAT 643886152 NZ_ABVX00000000 Draft 17x 4918 0 51 USA cases of blackleg disease in potatoes in Brazil Brazil cases of blackleg disease in potatoes in Brazil Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Soft rot Host Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter radioresistens BACTERIAL Acinetobacter radioresistens SH164 SH164 DSM 20098, ATCC 27535 Yes Gi03417 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Human Microbiome Project (HMP), Medical 575589 38345 004187_GCAT 18 200859 0 In progress 283499 Newbler 2.0.00.20 27.9X 40 2000 0 0 454-FLX USA Human feces Harald Seifert, University of Cologne, Germany Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Mesophile gram- Free living Pairs Human skin, Host, Skin microflora Nonmotile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter lwoffii BACTERIAL Acinetobacter lwoffii SH145 SH145 Unknown Gi03418 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Human Microbiome Project (HMP), Medical 575588 38343 SRS001967 004188_GCAT 17 272921 0 In progress 0 0 0 454-FLX, Sanger USA Human skin Harald Seifert, University of Cologne, Germany Human skin Homo sapiens Skin Anaerobe Rod-shaped Mesophile gram- Free living Human skin, Host, Skin microflora Nonmotile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter junii BACTERIAL Acinetobacter junii SH205 SH205 Acinetobacter junii SH205 ATCC 29521, DSM 20456 Yes Gi03419 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Human Microbiome Project (HMP), Medical 575587 38341 004189_GCAT 26 161553 0 In progress 0 0 0 USA Stool of breast-fed infant Harald Seifert, University of Cologne, Germany Homo sapiens Infant Gastrointestinal tract Feces Anaerobe Rod-shaped Mesophile gram- Free living Pairs Human skin, Human fecal, Host Nonmotile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter johnsonii BACTERIAL Acinetobacter johnsonii SH046 SH046 Unknown Gi03420 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Human Microbiome Project (HMP), Medical 575586 38339 004190_GCAT 16 115340 0 In progress 0 0 0 USA Human skin Harald Seifert, University of Cologne, Germany Human skin Homo sapiens Skin Anaerobe Rod-shaped Mesophile gram- Free living Pairs Human skin, Host, Skin microflora Nonmotile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter calcoaceticus BACTERIAL Acinetobacter calcoaceticus RUH2202 RUH2202 LMG 10517 Unknown Gi03421 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Human Microbiome Project (HMP), Medical 575585 38337 004191_GCAT 12 319962 0 In progress 0 0 0 USA Human wound Lenie Dijkshoom, Leiden University Medical Center, The Netherlands Sweden Malmv Sweden 55.603331 13.001303 Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Nosocomial infection Human skin, Host, Skin microflora Nonmotile Pathogen Heterotroph, Chemoheterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter baumannii BACTERIAL Acinetobacter baumannii ATCC 19606 ATCC 19606 ATCC 19606, DSM 6974 Yes Gi03422 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Human Microbiome Project (HMP), Medical 575584 38509 SRS001964 004192_GCAT 10 321159 0 In progress 0 0 0 Sanger, 454-FLX USA Human urine Anton Peleg, MGH, Boston Human urine Homo sapiens Urogenital tract Urine Urinary tract Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Pneumonia, Nosocomial infection Human skin, Host, Fresh water, Skin microflora Nonmotile Pathogen Heterotroph, Chemoheterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter genomosp. 13TU BACTERIAL Acinetobacter genomosp. 13TU RUH2624 RUH2624 Acinetobacter sp. RUH2624 LMG 10617 Unknown Gi03423 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Human Microbiome Project (HMP), Medical 575564 38511 004193_GCAT 14 0 In progress 0 0 0 USA Human skin front Lenie Dijkshoom, Leiden University Medical Center, The Netherlands Netherlands Human skin Homo sapiens Skin Anaerobe Rod-shaped Mesophile gram- Free living Human skin, Host, Skin microflora Nonmotile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter genomosp. 3 BACTERIAL Acinetobacter sp. SH024 SH024 Unknown Gi03424 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Human Microbiome Project (HMP), Medical 575565 004194_GCAT 13 249682 0 DNA Received 0 0 0 USA Human skin Harald Seifert, University of Cologne, Germany Human skin Homo sapiens Skin Anaerobe Rod-shaped Mesophile gram- Free living Human skin, Host, Skin microflora Nonmotile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Veillonella Veillonella atypica BACTERIAL Veillonella atypica D15 D15 BEI Shipping Unknown Gi03426 Genome targeted Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Human Microbiome Project (HMP), Medical 575616 004196_GCAT 870 HOMD: tax_524 119118 0 DNA Received 0 0 0 USA Human oral flora Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Oral Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. oral taxon 299 BACTERIAL Prevotella sp. Oral Taxon 299 F0039 F0039 Prevotella sp. oral taxon 299 str. F0039 BEI HM-3 Unknown Gi03427 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu ACWZ Human Microbiome Project (HMP), Medical 575614 40047 004197_GCAT 669 HOMD: tax_299 2085 0 DNA Received 0 0 0 USA Human oral isolate Izard/Dewhirst Human oral isolate Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. oral taxon 317 BACTERIAL Prevotella sp. F0108 F0108 BEI HM-5 Unknown Gi03428 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Human Microbiome Project (HMP), Medical 575615 38521 004198_GCAT 670 HOMD: tax_317 2085 0 In progress 0 0 0 USA Human oral isolate Izard/Dewhirst Human oral isolate Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host, Human oral microflora Nonmotile Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Peptoniphilus Peptoniphilus sp. oral taxon 386 BACTERIAL Peptoniphilus sp. Oral Taxon 386 F0131 F0131 Peptoniphilus sp. oral taxon 386 str. F0131 BEI HM-6 Unknown Gi03429 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Human Microbiome Project (HMP), Medical 575609 004199_GCAT 629 HOMD: tax_386 0 DNA Received 0 0 0 USA Human oral isolate Izard/Dewhirst Human oral isolate Homo sapiens Oral Anaerobe Mesophile gram+ Free living None Host, Human oral microflora 37 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella melaninogenica BACTERIAL Prevotella melaninogenica D18 D18 BEI HM-80 Unknown Gi03430 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu ACWY Human Microbiome Project (HMP), Medical 575612 40045 004200_GCAT 660 HOMD: tax_469 90223 0 DNA Received 0 0 0 USA Human oral isolate Emma Allen-Vercoe, U. Guelph, Canada Human oral isolate Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Human oral microflora, Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella buccae BACTERIAL Prevotella buccae D17 D17 BEI HM-45 Unknown Gi03431 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Human Microbiome Project (HMP), Medical 575611 38737 004201_GCAT 649 HOMD: tax_560 2178 0 In progress 0 0 0 USA Human oral isolate Emma Allen-Vercoe, U. Guelph, Canada Human oral isolate Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host, Human oral microflora Nonmotile Bacteria Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Paenibacillus sp. oral taxon 786 BACTERIAL Paenibacillus sp. Oral Taxon 786 D14 D14 Paenibacillus sp. oral taxon 786 str. D14 BEI HM-78 Unknown Gi03433 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Human Microbiome Project (HMP), Medical 621372 34703 004203_GCAT 617 HOMD: tax_786 14391 0 ACIH00000000, NZ_ACIH00000000 Complete 19.48x 300 4872 4529 52 454 USA Human oral isolate Emma Allen-Vercoe, U. Guelph, Canada Human oral isolate Homo sapiens Oral Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Host, Human oral microflora Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum BACTERIAL Fusobacterium periodonticum D10 D10 BEI HM-41 Unknown Gi03434 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Human Microbiome Project (HMP), Medical 620833 34699 004204_GCAT 399 HOMD: tax_201 11315 0 In progress 0 0 0 USA Human oral isolate Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Oral Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora Nonmotile Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus BACTERIAL Lactobacillus crispatus CTV-05 CTV-05 Unknown Gi03435 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Human Microbiome Project (HMP), Medical 440496 36325 004205_GCAT 505 0 In progress 0 0 0 USA Human vaginal normal flora Qiang Xu, Osel Inc. Homo sapiens Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus BACTERIAL Lactobacillus crispatus MV-3A-US MV-3A-US Lactobacillus crispatus MV-3A-US Unknown Gi03436 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Human Microbiome Project (HMP), Medical 575597 38513 004206_GCAT 508 148557 0 In progress 0 0 0 USA Human vaginal isolate Qiang Xu, Osel Inc. Human vaginal isolate Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Host, Human vaginal microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus BACTERIAL Lactobacillus crispatus SJ-3C-US SJ-3C-US Lactobacillus crispatus SJ-3C-US Unknown Gi03437 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Human Microbiome Project (HMP), Medical 575598 004207_GCAT 509 148557 0 DNA Received 0 0 0 USA Human vaginal isolate Qiang Xu, Osel Inc. Human vaginal isolate Homo sapiens Female Urogenital tract Vaginal Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Host, Human vaginal microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus jensenii BACTERIAL Lactobacillus jensenii SJ-7A-US SJ-7A-US Lactobacillus jensenii SJ-7A-US Unknown Gi03439 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Human Microbiome Project (HMP), Medical 575607 38515 004209_GCAT 527 47914 0 In progress 0 0 0 USA Human vaginal isolate Qiang Xu, Osel Inc. Human vaginal isolate Homo sapiens Female Urogenital tract Vaginal Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Host, Human vaginal microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus jensenii BACTERIAL Lactobacillus jensenii 27-2-CHN 27-2-CHN Unknown Gi03440 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Human Microbiome Project (HMP), Medical 575606 37953 004210_GCAT 525 47914 0 ACOF00000000, NZ_ACOF00000000 Draft 28.90x 56 1614 0 34 454 USA Human vaginal isolate Qiang Xu, Osel Inc. Human vaginal isolate Homo sapiens Female Healthy Urogenital tract Vaginal Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Host, Human vaginal microflora Nonmotile Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae ARCHAEAL Natronomonas moolapensis 8.8.11, DSM 18674 8.8.11, DSM 18674 DSM 18674, JCM 14361 Gi03444 Genome incomplete Public Max-Planck Institute Max Planck Society Pfeiffer F fpf@biochem.mpg.de Biotechnological 63743 004214_GCAT 0 3000 0 63 Germany "Saltern crystallizer pond, Australia on March 2002" March 2002 Australia Saltern crystallizer pond, Australia on March 2002 -38.009841 144.025274 Aerobe Mesophile Halophile gram- Free living None Fresh water, Solar saltern Phototroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Shigella Shigella sp. D8 BACTERIAL Shigella sp. D8 D8 Shigella sp. D8 BEI HM-86 Unknown Gi03446 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Human Microbiome Project (HMP), Medical 556265 32505 004216_GCAT 759 0 In progress 0 0 0 USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Host Motile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Shigella Shigella sp. D9 BACTERIAL Shigella sp. D9 D9 Shigella sp. D9 BEI HM-87 Unknown Gi03447 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Human Microbiome Project (HMP), Medical 556266 32507 004217_GCAT 760 0 NZ_ACDL00000000, ACDL00000000 Draft 16.95x 98 4717 4463 50 454 USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Host Motile Chemoorganotroph Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae Coprobacillus Coprobacillus sp. D6 BACTERIAL Coprobacillus sp. D6 D6 Coprobacillus sp. D6 BEI HM-85 Unknown Gi03448 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 556262 32461 004218_GCAT 273 0 In progress 0 0 0 USA Human feces Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Anaerobe Sporulating Mesophile gram+ Free living Host Bacteria Proteobacteria Betaproteobacteria Burkholderiales Oxalobacteraceae Oxalobacter Oxalobacter formigenes BACTERIAL Oxalobacter formigenes OXCC13 OXCC13 Oxalobacter formigenes OXCC13 BEI HM-1 Unknown Gi03449 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Human Microbiome Project (HMP), Medical 556269 32499 004219_GCAT 615 7369 0 NZ_ACDQ00000000, ACDQ00000000 Complete 49.10x 27 2417 2121 49 USA Mixed culture from feces from an unidentified human in Germany Milt Allison, Iowa State University, Ames 1995 Germany Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Mesophile gram- Free living Host, Intestinal microflora Oxalic acid degrader Bacteria Proteobacteria Betaproteobacteria Burkholderiales Oxalobacteraceae Oxalobacter Oxalobacter formigenes BACTERIAL Oxalobacter formigenes HOxBLS HOxBLS Oxalobacter formigenes HOxBLS BEI HM-2 Unknown Gi03450 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Human Microbiome Project (HMP), Medical 556268 32497 004220_GCAT 614 7369 0 ACDP00000000, NZ_ACDP00000000 Complete 45.80x 73 2465 2168 52 USA mixed culture from feces from an adult male Michael Surette, U. of Calgary, Canada 1985 USA 3994481 Homo sapiens Male Adult Gastrointestinal tract Feces Anaerobe Rod-shaped Mesophile gram- Free living Host, Intestinal microflora Oxalic acid degrader Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. D1 BACTERIAL Bacteroides sp. D1 D1 Bacteroides sp. D1 BEI HM-74 Unknown Gi03451 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Human Microbiome Project (HMP), Medical 556258 32447 004221_GCAT 134 0 ACAB00000000, NZ_ACAB00000000 Complete 209 5897 4846 41 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Human fecal sample Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Human intestinal microflora, Human fecal, Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. D2 BACTERIAL Bacteroides sp. D2 D2 Bacteroides sp. D2 BEI HM-28 Unknown Gi03452 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Human Microbiome Project (HMP), Medical 556259 32449 004222_GCAT 135 0 NZ_ACGA00000000, ACGA00000000 Draft 14.23x 88 6901 0 41 454 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Human fecal sample Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Human intestinal microflora, Human fecal, Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. D4 BACTERIAL Bacteroides sp. D4 D4 Bacteroides sp. D4 BEI HM-29 Unknown Gi03453 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Human Microbiome Project (HMP), Medical 556260 32451 004223_GCAT 136 0 ACDI00000000, NZ_ACDI00000000 Complete 25.32x 111 5501 4489 41 454 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Human fecal sample Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Human intestinal microflora, Human fecal, Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. D22 BACTERIAL Bacteroides sp. D22 D22 BEI HM-82 Unknown Gi03454 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Human Microbiome Project (HMP), Medical 585544 004224_GCAT 106 1973 0 DNA Received 0 0 0 USA Human gastrointestinal tract sample Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Eukaryota Basidiomycota Microbotryales Microbotryaceae Microbotryum EUKARYAL Microbotryum violaceum Ge00297 EST incomplete Public Genoscope Agricultural, Plant Pathogen 5272 004225_GCAT 0 0 0 0 France Host Parasite, Pathogen Eukaryota Streptophyta Fagales Betulaceae Alnus EUKARYAL Alnus glutinosa Ge00298 EST incomplete Public Genoscope Agricultural 3517 004226_GCAT 0 0 0 0 France Eukaryota Saprolegniales Saprolegniaceae Aphanomyces Aphanomyces euteiches EUKARYAL Aphanomyces euteiches Ge00299 EST incomplete Public Genoscope Agricultural 100861 004227_GCAT 0 0 0 0 France Eukaryota Streptophyta Fagales Casuarinaceae Casuarina EUKARYAL Casuarina glauca swamp oak Ge00300 EST incomplete Public Genoscope Agricultural 3522 004228_GCAT 0 0 0 0 France Eukaryota Streptophyta Sapindales Rutaceae Citrus EUKARYAL Citrus clementina Ge00301 EST incomplete Public Genoscope Agricultural 85681 004229_GCAT 0 0 0 0 France Eukaryota Streptophyta Fagales Juglandaceae Juglans EUKARYAL Juglans regia Ge00302 EST incomplete Public Genoscope Agricultural 51240 004230_GCAT 0 0 0 0 France Eukaryota Streptophyta Coniferopsida Coniferales Pinaceae Pinus EUKARYAL Pinus pinaster maritime pine Ge00303 EST incomplete Public Genoscope Agricultural 71647 004231_GCAT 0 0 0 0 France Eukaryota Streptophyta Fagales Fagaceae Quercus EUKARYAL Quercus robur English oak Ge00304 EST incomplete Public Genoscope Wincker P pwincker@genoscope.cns.fr Agricultural 38942 004232_GCAT 0 35803 0 0 France Roots, leaves, differentiating xylem Roots, leaves, differentiating xylem Eukaryota Streptophyta Fagales Fagaceae Quercus EUKARYAL Quercus petraea durmast oak Ge00305 EST incomplete Public Genoscope Wincker P pwincker@genoscope.cns.fr Agricultural 38865 004233_GCAT 0 9990 0 0 France Buds Buds Eukaryota Chordata Petromyzontiformes Petromyzontidae Lampetra EUKARYAL Lampetra fluviatilis European river lamprey Ge00306 EST incomplete Public Genoscope Wincker P pwincker@genoscope.cns.fr Agricultural 7748 004234_GCAT 0 0 0 0 France embryo, larva and adult stages (brain, eye, pineal gland) embryo, larva and adult stages (brain, eye, pineal gland) Eukaryota Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus EUKARYAL Scyliorhinus canicula spotted dogfish Ge00307 EST incomplete Public Genoscope Wincker P pwincker@genoscope.cns.fr Agricultural 7830 004235_GCAT 0 0 0 0 France gastrulation, beginning of organogenesis, postnatal stage, adult brain gastrulation, beginning of organogenesis, postnatal stage, adult brain Eukaryota Mollusca Bivalvia Ostreoida Ostreidae Crassostrea EUKARYAL Crassostrea gigas Pacific oyster Ge00308 EST incomplete Public Genoscope Wincker P pwincker@genoscope.cns.fr Agricultural 29159 004236_GCAT 0 30000 0 0 France Gonad, Haemocyte and all developmental stages Gonad, Haemocyte and all developmental stages Eukaryota Annelida Hirudinida Arhynchobdellida Hirudinidae Hirudo EUKARYAL Hirudo medicinalis medicinal leech Ge00309 EST incomplete Public Genoscope Wincker P pwincker@genoscope.cns.fr Agricultural 6421 004237_GCAT 0 0 0 0 France neurons neurons Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Aspergillus EUKARYAL Aspergillus awamori NBRC 4314 NBRC 4314 Gi03455 Genome incomplete Public NITE Animal Pathogen, Human Pathogen, Medical 105351 004238_GCAT 0 0 0 0 Sanger Japan Animal manure, Soil Allergenic, Pathogen Bacteria Chloroflexi Caldilineae Caldilineales Caldilineaceae Caldilinea BACTERIAL Caldilinea aerophila STL-6-O1 STL-6-O1 DSM 14525, JCM 11388 Gi03456 Genome incomplete Public NITE 133453 004239_GCAT 26613 0 0 0 59 Sanger Japan Hot spring sulfur-turf in Japan Japan Hot spring sulfur-turf in Japan Facultative Nonsporulating Thermophile 7.5 - 8.0 0.7 - 0.8 um Free living Hot spring, Fresh water 55 Chemoorganotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia BACTERIAL Burkholderia plantarii MAFF301723 MAFF301723 Gi03457 Genome incomplete Public NITE 41899 004240_GCAT 110590 0 0 0 0 Sanger Japan Facultative Nonsporulating Thermophile 7.5 - 8.0 0.7 - 0.8 um gram- Free living Hot spring, Fresh water 55 Chemoorganotroph Bacteria Aquificae Aquificae (class) Aquificales Thermosulfidibacter BACTERIAL Thermosulfidibacter takaii ABI70S6 ABI70S6 DSM 17441, JCM 13301 Yes Gi03458 Genome incomplete Public NITE Biotechnological 412593 004241_GCAT 230931 0 0 0 44.2 Sanger Japan "Deep-sea hydrothermal field at the Yonaguni Knoll IV, Southern Okinawa Trough" Japan Southern Okinawa Trough Obligate anaerobe Rod-shaped Thermophile 5.0 - 7.5 0.4 - 0.8 um 0.9 - 2.0 um gram- Free living None Hot spring, Fresh water 70 Motile Sulfur reducer Chemolithoautotroph Archaea Euryarchaeota Methanomicrobia methanogenic archaeon SANAE ARCHAEAL Methanocella paludicola SANAE SANAE methanogenic archaeon SANAE Gi03459 Genome incomplete Public NITE Biotechnological 304371 004242_GCAT 111156 0 0 0 0 Sanger Japan gram- Free living None Sulfur reducer Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Stella BACTERIAL Stella humosa ATCC 43930 ATCC 43930 VKM B-1137, DSM 3698, ATCC 43930 Yes Gi03461 Genome incomplete Public Indiana Univ NSF Brun Y ybrun@indiana.edu 94 004244_GCAT 100274 0 0 0 73 454-FLX USA "Virgin chernozem, A1 layer, Krassnoder region, Russia" Russia Virgin chernozem, A1 layer, Krassnoder region, Russia 45.067022 38.97789 Aerobe Star-shaped Nonsporulating 0.7 - 3.0 um gram- Free living Pairs, Singles None Fresh water, Soil, Fresh water Chemoorganotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae BACTERIAL Prosthecomicrobium hirschii ATCC 27832 ATCC 27832 ATCC 27832 Yes Gi03462 Genome incomplete Public Indiana Univ NIH Brun Y ybrun@indiana.edu 81894 004245_GCAT 0 Draft 16.5x 0 0 69 454-FLX USA "Muskrat Pond, Chapel Hill, N.C." USA Muskrat Pond, Chapel Hill, N.C. Facultative Rod-shaped Mesophile gram- Free living None Soil, Fresh water, Fresh water Motile Bacteria Verrucomicrobia Verrucomicrobiae Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter BACTERIAL Prosthecobacter vanneervenii ATCC 700199 ATCC 700199 ATCC 700199, DSM 12252 Yes Gi03463 Genome incomplete Public Indiana Univ NSF Brun Y ybrun@indiana.edu 48466 004246_GCAT 1593 0 0 0 60 454-FLX USA "Fresh water from Chapel Hill, N.C" USA Fresh water from Chapel Hill, N.C 35.929681 -79.034165 Aerobe Mesophile gram- Free living None Fresh water, Fresh water Heterotroph Eukaryota Chordata Squamata Iguanidae Anolis EUKARYAL Anolis carolinensis green anole Ge00310 EST incomplete Public Indiana Univ 28377 004248_GCAT 0 Draft 0 0 0 Sanger USA Mixed organs Mixed organs Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori G27 G27 Helicobacter pylori G27 Gc00866 Genome Complete and Published Public Univ of Oregon, Washington Univ Salama N nsalama@fhcrc.org 2008-10-03 J Bacteriology 191, 447-8 Human Pathogen, Medical 563041 31341 004251_GCAT 330405 643348558 NC_011333 Complete 1652 1493 1 1 38 USA Homo sapiens Gastrointestinal tract Stomach Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Ulcer, Gastric inflammation, Gastric Ulcerations Host, Human stomach 37 Motile Pathogen Bacteria Proteobacteria Deltaproteobacteria Bdellovibrionales Bdellovibrionaceae Bdellovibrio BACTERIAL Bdellovibrio sp. JCVIHMP045 JCVIHMP045 Bdellovibrio sp. JCVIHMP045 Unknown Gi03466 Genome incomplete Public J. Craig Venter Institute JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Human Microbiome Project (HMP), Medical 553215 31333 004252_GCAT 892 0 In progress 0 0 0 USA Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Soil, Host, Fresh water Motile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium bifidum BACTERIAL Bifidobacterium bifidum BGN4 BGN4 Bifidobacterium bifidum BGN4 Gi03467 Genome incomplete Public KRIBB Anticancer agent, Biotechnological, Food industry 484020 21077 004253_GCAT 0 0 0 0 Korea human feces in Korea Korea human feces in Korea Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host, Intestinal microflora 39 - 40 Nonmotile Non-Pathogen, Probiotic Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Brachyspiraceae Brachyspira Brachyspira hyodysenteriae BACTERIAL Brachyspira hyodysenteriae WA1, ATCC 49526 WA1, ATCC 49526 Brachyspira hyodysenteriae WA1 ATCC 49526 Gc00965 Gi03468 Genome Complete and Published Public Centre for Comparative Genomics Hampson DJ d.hampson@murdoch.edu.au BHWA1 2009-03-18 PLoS ONE 4, e4641 Food industry, Swine Pathogen 565034 31263 004254_GCAT 643692010 NC_012225 Complete Phred/Phrap 5x Glimmer 3.02 3000 2649 1 1 27 454, Sanger Australia Pig with swine dysentery in Western Australia Australia Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Dysenteria Host Motile Chemoorganotroph Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Brachyspiraceae Brachyspira BACTERIAL Brachyspira pilosicoli 95/1000 95/1000 Gi03469 Genome incomplete Public Centre for Comparative Genomics Food industry, Swine Pathogen 52584 004255_GCAT 150799 0 Draft Phred/Phrap 5x Glimmer 2.1 3200 0 0 Sanger, 454 Australia Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Dysenteria Host Motile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Buchnera Buchnera aphidicola BACTERIAL Buchnera aphidicola 5A 5A Buchnera aphidicola str. 5A (Acyrthosiphon pisum) Gc00919 Gi03470 Genome Complete and Published Public Univ of Arizona, DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org BUAP5A 2009-01-06 Unpublished Biotechnological, Evolutionary 563178 31225 004256_GCAT 643348520 NC_011833 Complete 642 599 1 0 26 USA Acyrthosiphon pisum Acyrthosiphon pisum Acyrthosiphon pisum Mesophile 3 um gram- Symbiotic Acyrthosiphon pisum 7029 Singles None Insect endosymbiont, Host, Endosymbiont Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Buchnera Buchnera aphidicola BACTERIAL Buchnera aphidicola Tuc7 Tuc7 Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum) Gc00920 Gi03471 Genome Complete and Published Public Univ of Arizona, DOE Joint Genome Institute DOE Moran NA 2009-01-06 Unpublished Biotechnological, Evolutionary 561501 31223 004257_GCAT 643348522 NC_011834 Complete 641 553 1 0 26.3 USA Acyrthosiphon pisum Acyrthosiphon pisum Mesophile 3 um gram- Symbiotic Acyrthosiphon pisum 7029 Singles None Insect endosymbiont, Host, Endosymbiont Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Leptotrichia Leptotrichia goodfellowii BACTERIAL Leptotrichia goodfellowii F0264 F0264 Leptotrichia goodfellowii F0264 BEI HM-12 Unknown Gi03472 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Human Microbiome Project (HMP), Medical 596323 34093 004258_GCAT 554 HOMD: tax_845 0 In progress 0 0 0 USA Oral cavity of a healthy person Izard/Dewhirst Oral cavity of a healthy person Homo sapiens 9606 Healthy Oral Anaerobe Rod-shaped Mesophile gram- Free living Chains, Filaments Host, Oral microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Mobiluncus Mobiluncus mulieris BACTERIAL Mobiluncus mulieris JCVIHMP025 JCVIHMP025 Mobiluncus mulieris JCVIHMP025 Unknown Gi03473 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 553195 32045 004259_GCAT 580 94392 0 In progress 0 0 0 USA Human vagina Wilson/White Human vagina Homo sapiens Female Urogenital tract Vaginal Anaerobe Mesophile gram+ Free living Bacterial vaginosis Vagina microflora, Host Motile Bacteria Cyanobacteria Nostocales Nostocaceae Anabaena Anabaena azollae BACTERIAL Anabaena azollae 0708 0708 'Nostoc azollae' 0708 Gi03474 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Evolutionary 551115 30807 004260_GCAT 708 643886069 NZ_ACIR00000000 Draft 216 5033 6501 38 USA water fern Azolla commonly known as duckweed water fern Azolla commonly known as duckweed Aerobe Nonsporulating Mesophile gram- Free living Filaments None Host Motile Nitrogen fixation Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens BACTERIAL Pseudomonas fluorescens NZ011 NZ011 Pseudomonas fluorescens NZ011 Gi03475 Genome incomplete Public The Sainsbury Laboratory Medical, Human Pathogen 564420 32035 004261_GCAT 0 0 0 0 United Kingdom Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Host, Soil, Fresh water Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens BACTERIAL Pseudomonas fluorescens NZ052 NZ052 Pseudomonas fluorescens NZ052 Gi03476 Genome incomplete Public The Sainsbury Laboratory Medical, Human Pathogen 564421 32037 004262_GCAT 0 0 0 0 United Kingdom Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Soil, Fresh water, Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens BACTERIAL Pseudomonas fluorescens NZ17 NZ17 Pseudomonas fluorescens NZ17 Gi03477 Genome incomplete Public The Sainsbury Laboratory Medical, Human Pathogen 564422 32039 004263_GCAT 0 0 0 0 United Kingdom Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Fresh water, Host, Soil Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas coronafaciens BACTERIAL Pseudomonas syringae pv. oryzae 1_6 1_6 oryzae Pseudomonas syringae pv. oryzae str. 1_6 Gi03478 Genome incomplete Public The Sainsbury Laboratory Dangl JL dangl@email.unc.edu Plant Pathogen, Agricultural 563797 31357 004264_GCAT 0 NZ_ABZR00000000 Draft 6704 0 57 USA MAFF311107 minimally passaged isolate Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Fresh water, Soil, Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas tolaasii BACTERIAL Pseudomonas tolaasii NCPPB 2192 NCPPB 2192 Pseudomonas tolaasii NCPPB 2192 Gi03479 Genome incomplete Public The Sainsbury Laboratory Medical, Human Pathogen 564423 32041 004265_GCAT 74047 0 0 0 0 United Kingdom Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Host, Soil, Fresh water Motile Pathogen Heterotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia solanacearum BACTERIAL Ralstonia solanacearum IPO1609 IPO1609 Ralstonia solanacearum IPO1609 Gi03480 Genome incomplete Public Genoscope Plant Pathogen, Agricultural 564066 32087 004266_GCAT 350022 0 0 0 0 France "cooking banana (Cultivar Saba) in Mindanao Island, Phillipines" Phillipines Mindanao Island, Phillipines 13.116227, 121.079371 Aerobe Rod-shaped Mesophile gram- Free living Wilting disease, Plant rot Soil Motile Pathogen Heterotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia solanacearum BACTERIAL Ralstonia solanacearum MolK2 MolK2 Ralstonia solanacearum MolK2 ATCC BAA-1115 No Gi03481 Genome incomplete Public Genoscope Genoscope seqref@genoscope.cns.fr Plant Pathogen, Agricultural 564065 32085 004267_GCAT 341686 0 NS_000197 Draft 40 5964 5018 62 France cooking banana (Cultivar Saba) in Mindanao Island, Phillipines June, 1996 Phillipines Mindanao Island, Phillipines 13.116227 121.079371 Aerobe Rod-shaped Mesophile gram- Free living Plant rot, Wilting disease Soil Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica sv Enteritidis 48-0811 48-0811 Enteritidis Salmonella enterica subsp. enterica serovar Enteritidis str. 48-0811 Gi03482 Genome incomplete Public Washington Univ WASHU webmaster@genome.wustl.edu Medical, Human Pathogen 565035 31061 004268_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Gastroenteritis, Food poisoning Soil, Host, Fresh water, Food Motile Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus CGS00 CGS00 Staphylococcus aureus subsp. aureus CGS00 Gi03483 Genome incomplete Public Center for Genomic Sciences Medical 543538 30107 004269_GCAT 0 0 0 0 USA nasal specimen from an asymptomatic person nasal specimen from an asymptomatic person Homo sapiens Healthy Airways Nasal Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Host Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus CGS01 CGS01 Staphylococcus aureus subsp. aureus CGS01 Gi03484 Genome incomplete Public Center for Genomic Sciences Medical, Human Pathogen 543539 30103 004270_GCAT 0 0 0 0 USA Infected human elbow arthroplasty from a patient in Pittsburgh USA Infected human elbow arthroplasty from a patient in Pittsburgh 40.438423 -80.001933 Homo sapiens Patient Skin Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Septicemia, Pneumonia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus CGS03 CGS03 Staphylococcus aureus subsp. aureus CGS03 Gi03485 Genome incomplete Public Center for Genomic Sciences Medical, Human Pathogen 543540 30105 004271_GCAT 0 0 0 0 USA chronic abdominal mesh implant infection from a patient in Pittsburgh who had undergone an abdominalplasty USA chronic abdominal mesh implant infection from a patient in Pittsburgh who had undergone an abdominalplasty 40.438423 -80.001933 Homo sapiens Patient with chronic abdominal mesh implant infection Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Septicemia, Pneumonia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus JKD6008 JKD6008 Staphylococcus aureus subsp. aureus str. JKD6008 Gi03486 Genome incomplete Public Monash Univ Howden B benjamin.howden@austin.org.au Medical, Human Pathogen 546342 29567 004272_GCAT 643886080 NZ_ABRZ00000000 Draft 2818 0 32 Australia clinical isolate resistant to methicillin clinical isolate resistant to methicillin Homo sapiens Patient Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Septicemia, Pneumonia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus JKD6009 JKD6009 Staphylococcus aureus subsp. aureus str. JKD6009 Gi03487 Genome incomplete Public Monash Univ Howden B benjamin.howden@austin.org.au Medical, Human Pathogen 546343 29569 004273_GCAT 643886192 NZ_ABSA00000000 Draft 2819 0 32 Australia clinical isolate resistant to methicillin and sensitive to vancomycin clinical isolate resistant to methicillin and sensitive to vancomycin Homo sapiens Patient Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae 158 158 Streptococcus pneumoniae 158 Gi03488 Genome incomplete Public Allegheny-Singer Research Institute Medical, Human Pathogen 543541 30405 004274_GCAT 158 0 0 0 0 USA low-passage isolate from the nasopharynx of a child who came down with pneumoniae after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh USA low-passage isolate from the nasopharynx of a child who came down with pneumoniae after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh Homo sapiens Child Patient with pneumonia Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Host, Human nasopharyngeal microflora Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium matruchotii BACTERIAL Corynebacterium matruchotii ATCC 14266 ATCC 14266 Corynebacterium matruchotii ATCC 14266 IFO 15360, NCTC 10254, PCM 2414, ATCC 14266 Yes Gi03489 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 553207 31011 004275_GCAT 299 13399 0 NZ_ACSH00000000, ACSH00000000 Draft Newbler 1.1.03.24-64-7 22X 28 2845 2865 57 454 USA Human oral flora Dewhirst Human oral flora Homo sapiens Oral Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Oral infection Host, Oral microflora 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Enhydrobacter Enhydrobacter aerosaccus BACTERIAL Enhydrobacter aerosaccus SK60 SK60 Enhydrobacter aerosaccus SK60 BEI HM-113 Unknown Gi03490 Genome incomplete Public J. Craig Venter Institute JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 553217 31335 SRS001876 004276_GCAT 337 86658 0 NZ_ACYI00000000, ACYI00000000 Draft 45x 88 2702 2619 43 454-FLX USA Human skin flora Blaser Human skin flora Homo sapiens Skin Left arm Facultative Rod-shaped Mesophile gram- Free living Human skin, Host Nonmotile Chemoorganotroph Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas endodontalis BACTERIAL Porphyromonas endodontalis ATCC 35406 ATCC 35406 Porphyromonas endodontalis ATCC 35406 ATCC 35406 Yes Gi03491 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 553175 31385 004277_GCAT 637 84092 643886148 ACNN00000000, NZ_ACNN00000000 Complete 94x 2064 2018 47 454 USA Human oral flora Dewhirst 3926818 Human oral flora Homo sapiens Oral Obligate anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Endocarditis Human oral microflora, Host Nonmotile Saccharolytic Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella melaninogenica BACTERIAL Prevotella melaninogenica ATCC 25845 ATCC 25845 Prevotella melaninogenica ATCC 25845 ATCC 25845 Yes Gi03492 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 553174 31383 004278_GCAT 659 90223 0 ACSI00000000, NZ_ACSI00000000 Draft 136x 32 3170 2573 40 454 USA Human oral flora Dewhirst Human oral flora Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Oral infection, Periodontal infection Human oral microflora, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micrococcaceae Rothia Rothia mucilaginosa BACTERIAL Rothia mucilaginosa ATCC 25296 ATCC 25296 Rothia mucilaginosa ATCC 25296 NCTC 10663, PCM 2415, DSM 20746, CCM 2417, ATCC 25296 Yes Gi03493 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 553201 31405 SRS001213 004279_GCAT 736 12497 0 NZ_ACVO00000000, ACVO00000000 Draft 28x 25 2255 1794 59 454 USA Human oral flora Dewhirst Human oral flora Homo sapiens Oral Pharyngeal mucosa Coccus-shaped Mesophile gram+ Free living Periodontitis, Endocarditis, Meningitis, Opportunistic infection Human oral microflora, Host Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter sp. 6013113 BACTERIAL Acinetobacter sp. 6013113 6013113 Unknown Gi03494 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 592014 33017 004280_GCAT 20 6013113 0 In progress 0 0 0 USA Human skin Loman,Nick Human skin Homo sapiens Skin Aerobe Coccus-shaped Mesophile gram- Free living Pairs Human skin, Host Nonmotile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter sp. 6013150 BACTERIAL Acinetobacter sp. 6013150 6013150 Unknown Gi03495 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 525243 33071 004281_GCAT 21 6013150 0 In progress 0 0 0 USA Human skin Loman,Nick Human skin Homo sapiens Skin Aerobe Mesophile gram- Free living Pairs Human skin, Host Nonmotile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter sp. 6014059 BACTERIAL Acinetobacter sp. 6014059 6014059 Unknown Gi03496 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 525242 33073 004282_GCAT 22 6014059 0 In progress 0 0 0 USA Human skin Human skin Homo sapiens Skin Aerobe Coccus-shaped Mesophile gram- Free living Pairs Host, Human skin Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Aerococcaceae Aerococcus Aerococcus christensenii BACTERIAL Anaerococcus christensenii DSM 15819 DSM 15819 Aerococcus christensenii DSM 15819 DSM 15819 Yes Gi03497 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525247 31431 004283_GCAT 62 15075 0 In progress 0 0 0 USA Human vaginal flora DSM Human vaginal flora Homo sapiens Female Urogenital tract Vaginal Microaerophilic Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs Human vaginal microflora, Host Nonmotile Bacteria Proteobacteria Betaproteobacteria Burkholderiales Alcaligenaceae Alcaligenes Alcaligenes faecalis BACTERIAL Alcaligenes faecalis ATCC 15554 ATCC 15554 NCTC 10416, DSM 30033, CIP 71.8, CCEB 554, ATCC 15554 No Gi03498 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 32001 004284_GCAT 64 324361 0 0 0 0 USA Human fecal sample Human fecal sample Homo sapiens Gastrointestinal tract Feces Mesophile gram- Free living Human fecal, Human intestinal microflora, Host Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus BACTERIAL Bacillus alcalophilus Unknown Gi03502 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 1445 004288_GCAT 94 199812 0 0 0 0 USA Human fecal sample Human fecal sample Homo sapiens Gastrointestinal tract Feces Aerobe Rod-shaped Sporulating Mesophile gram+ Free living None Human fecal, Host, Human intestinal microflora Alkalophile Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus BACTERIAL Bacillus halodurans Unknown Gi03503 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 86665 004289_GCAT 95 115157 0 0 0 0 USA Human fecal sample Human fecal sample Homo sapiens Gastrointestinal tract Feces Aerobe Rod-shaped Sporulating Mesophile gram+ Free living None Human fecal, Host, Human intestinal microflora Bacteria Bacteroidetes Bacteroidetes oral taxon 274 BACTERIAL Bacteroides sp. Oral Taxon 274 F0058 F0058 Bacteroidetes oral taxon 274 str. F0058 BEI HM-4 Unknown Gi03510 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 575590 004296_GCAT 156 HOMD: tax_274 0 DNA Received 0 0 0 USA Human oral microflora Izard/Dewhirst Human oral microflora Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile Free living Human oral microflora, Human airways, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum BACTERIAL Bifidobacterium longum infantis ATCC 55813 ATCC 55813 Bifidobacterium longum subsp. infantis ATCC 55813 ATCC 55813 Unknown Gi03513 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 548480 31437 SRS001940 004299_GCAT 175 51788 643886140 NZ_ACHI00000000, ACHI00000000 Complete 552936 Newbler/1.1.03.24 53.04X 180 2372 2171 60.3 Illumina, 454-FLX USA Human feces ATCC Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs, Singles None Human fecal, Host, Human intestinal microflora Nonmotile Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Bilophila Bilophila wadsworthia BACTERIAL Bilophila wadsworthia 3_1_6 3_1_6 BEI HM-32 Unknown Gi03514 Genome incomplete Public Broad Institute Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 563192 004300_GCAT 179 0 DNA Received 0 0 0 USA Human feces Emma Allen-Vercoe, U. Guelph, Canada Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Mesophile gram- Free living Human fecal, Host, Human intestinal microflora Catalase positive Bacteria Cyanobacteria Nostocales Nostocaceae Anabaena BACTERIAL Anabaena sp. 90 90 Anabaena sp. 90 Gi03515 Genome incomplete Public Univ of Helsinki Evolutionary 46234 30803 004301_GCAT 69813 0 0 0 0 Finland Lake Vesijdrvi in Finland Finland Lake Vesijdrvi in Finland 61.525676 24.134639 Aerobe Nonsporulating Mesophile gram- Free living Filaments None Fresh water Motile Nitrogen fixation Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus subtilis BACTERIAL Bacillus subtilis subtilis AUSI98 AUSI98 Bacillus subtilis subsp. subtilis str. AUSI98 Gi03516 Genome incomplete Public Univ of Maryland, IGS Ravel J http://www.tigr.org/faculty/Ravel_Jacques/index.shtml Biotechnological 565143 32097 004302_GCAT 0 0 0 0 USA "Soil collected from Salzburg, Austria" Austria Salzburg, Austria 47.800499 13.04441 Facultative Rod-shaped Sporulating Mesophile gram+ Free living None Soil Motile Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus vallismortis BACTERIAL Bacillus vallismortis DV1-F-3, NRRL B-14890 DV1-F-3, NRRL B-14890 Bacillus vallismortis NRRL B-14890 NRRL B-14890 Gi03517 Genome incomplete Public Univ of Maryland, IGS Ravel J http://www.tigr.org/faculty/Ravel_Jacques/index.shtml Agricultural, Vitamin production, Biotechnological 564287 31297 004303_GCAT 0 0 0 0 USA "soil in Death Valley, California" USA Death Valley, California 36.455556 -116.866667 Aerobe Rod-shaped Sporulating Mesophile gram+ Free living None Soil Motile Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis sv J, 6276 sv J, 6276 J Chlamydia trachomatis 6276 Gi03518 Genome incomplete Public Oregon State Univ Animal Pathogen, Medical, Human Pathogen 564416 32183 004304_GCAT 0 NZ_ABYD00000000 Draft 200x 1 1043 0 41 Solexa, Illumina USA Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Urogenital infection Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis sv J, 6276s sv J, 6276s J Chlamydia trachomatis 6276s Gi03519 Genome incomplete Public Oregon State Univ Animal Pathogen, Medical, Human Pathogen 564417 32185 004305_GCAT 0 NZ_ABYE00000000 Draft 200x 1 1043 0 41.3 Illumina, Solexa USA Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Urogenital infection Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis sv F, 70 sv F, 70 F Chlamydia trachomatis 70 Gi03520 Genome incomplete Public Oregon State Univ Animal Pathogen, Medical, Human Pathogen 564418 32187 004306_GCAT 0 NZ_ABYF00000000 Draft 200x 1 1048 0 41.3 Solexa, Illumina USA Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Urogenital infection Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis sv F, 70s sv F, 70s F Chlamydia trachomatis 70s Gi03521 Genome incomplete Public Oregon State Univ Animal Pathogen, Medical, Human Pathogen 564419 32189 004307_GCAT 0 NZ_ABYG00000000 Draft 200x 1 1046 0 41 Solexa, Illumina USA Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Urogenital infection Host Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium matruchotii BACTERIAL Corynebacterium matruchotii ATCC 33806 ATCC 33806 Corynebacterium matruchotii ATCC 33806 ATCC 33806, CCUG 47160 No Gi03522 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 566549 30771 004308_GCAT 300 643886207 NZ_ACEB00000000, ACEB00000000 Draft Newbler 2.0.00.20 24.6X 58 2967 3197 57 454 USA Supragingival plaque in healthy periodontium ATCC 33806 Supragingival plaque in healthy periodontium Homo sapiens Healthy Oral Gingival crevices Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Eye infection Host 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium BACTERIAL Enterococcus faecium C68 C68 Enterococcus faecium C68 Gi03524 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 565664 34867 004310_GCAT 0 0 0 0 USA vancomycin-resistant isolate Facultative Coccus-shaped Mesophile Halotolerant gram+ Free living Chains, Pairs Nocosomial infection, Opportunistic infection Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium BACTERIAL Enterococcus faecium D344SRF D344SRF Enterococcus faecium D344SRF Gi03525 Genome incomplete Public Broad Institute Medical, Human Pathogen 565665 32079 004311_GCAT 0 0 0 0 USA "derived from the ampicillin resistant, Tn916-containing strain D344R" derived from the ampicillin resistant, Tn916-containing strain D344R Facultative Coccus-shaped Mesophile Halotolerant gram+ Free living Chains, Pairs Nocosomial infection, Opportunistic infection Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium BACTERIAL Enterococcus faecium TC 6 TC 6 Enterococcus faecium TC 6 Gi03526 Genome incomplete Public Broad Institute Human Pathogen, Medical 565666 32161 004312_GCAT 0 0 0 0 USA "derived from the ampicillin resistant, Tn916-containing strain D344R" derived from the ampicillin resistant, Tn916-containing strain D344R Facultative Coccus-shaped Mesophile Halotolerant gram+ Free living Chains, Pairs Nocosomial infection, Opportunistic infection Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella BACTERIAL Francisella tularensis TI0902 (TI) TI0902 (TI) Type A Gi04347 Genome incomplete Public Virginia Polytechnic Institute NIH Crasta OR ocrasta@vbi.vt.edu http://ci.vbi.vt.edu/Crasta/ Biothreat, Medical, Human Pathogen 263 005199_GCAT 0 Draft 306033 29x 100 1892 0 32 454-FLX USA respiratory tract of a diseased cat highly virulent Felis catus Diseased Airways Respiratory tract Aerobe Coccus-shaped Nonsporulating Mesophile Halophile gram- Free living Singles Tularemia Host, Fresh water Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium bovis BACTERIAL Mycobacterium bovis BCG Tokyo 172 Tokyo 172 Mycobacterium bovis BCG str. Tokyo 172 Gc00957 Gi03527 Genome Complete and Published Public BCG Laboratory, Agencourt Bioscience Seki M seki@bcg.gr.jp JTY 2009-03-10 Vaccine 27, 1710-1716 Animal Pathogen, Medical, Human Pathogen, Cattle Pathogen 561275 31211 004313_GCAT 643692028 NC_012207 Complete Level 6: Finished 0.8Kb, 4Kb Paracel 4371 4031 1 0 65 Japan Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes MGAS2111 MGAS2111 Streptococcus pyogenes MGAS2111 Gi03528 Genome incomplete Public Univ of Maryland, IGS Medical, Human Pathogen 561522 31303 004314_GCAT 638341208 0 0 0 Sanger USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Rheumatic fever Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Serratia Serratia sp. PRGB11 BACTERIAL Serratia sp. PRGB11 PRGB11 Serratia sp. PRGB11 Gi03529 Genome incomplete Public Beijing Univ 438448 20239 004315_GCAT 222906 0 0 0 0 China Facultative Rod-shaped Mesophile gram- Free living Host Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica sv Paratyphi C SARB 49 SARB 49 Paratyphi C Salmonella enterica subsp. enterica serovar Paratyphi C str. SARB 49 Gi03530 Genome incomplete Public Washington Univ WASHU webmaster@genome.wustl.edu Medical, Human Pathogen 566547 31063 004316_GCAT 0 0 0 0 USA blood of a patient in Santiago, Chile Chile Santiago, Chile -33.42536 -70.566466 Homo sapiens 9606 Blood Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis, Paratyphoid fever Food, Soil, Host, Fresh water Motile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica sv Panama KMR64 KMR64 Panama Salmonella enterica subsp. enterica serovar Panama str. KMR64 Gi03531 Genome incomplete Public Medical, Human Pathogen 565038 31187 004317_GCAT 0 0 0 0 Korea diarrheal patients during 2001-2004 in Gwangju area, Korea Korea Gwangju area, Korea 35.159545 126.852601 Homo sapiens 9606 Patient with diarrhea Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Food, Soil, Host, Fresh water Motile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica sv Indiana KMR53 KMR53 Indiana Salmonella enterica subsp. enterica serovar Indiana str. KMR53 Gi03532 Genome incomplete Public Medical, Human Pathogen 565037 31185 004318_GCAT 0 0 0 0 Korea diarrheal patients during 2001-2004 in Gwangju area, Korea Korea Gwangju area, Korea 35.159545 126.852601 Homo sapiens 9606 Patient with diarrhea Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Food, Soil, Host, Fresh water Motile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica sv Brandenburg KMR12 KMR12 Brandenburg Salmonella enterica subsp. enterica serovar Brandenburg str. KMR12 Gi03533 Genome incomplete Public Medical, Human Pathogen 565036 31183 004319_GCAT 0 0 0 0 Korea diarrheal patients during 2001-2004 in Gwangju area, Korea Korea Gwangju area, Korea 35.159545 126.852601 Homo sapiens 9606 Patient with diarrhea Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Food, Soil, Host, Fresh water Motile Chemoorganotroph Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae BACTERIAL Campylobacter showae RM3277, CCUG 30254 RM3277, CCUG 30254 Campylobacter showae RM3277 CCUG 30254, ATCC 51146 Yes Gi03534 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 553219 31019 SRS001051 004320_GCAT 193 HOMD: tax_763 0 NZ_ACVQ00000000, ACVQ00000000 Draft 207666 Newbler 1.1.03.24-64-7 21X 33 2255 2405 45 454-FLX USA Human gingival crevice, Tokyo, Japan Mandrell Japan Human oral flora from Tokyo, Japan 35.689488 139.691706 Homo sapiens Oral Gingival crevices Microaerophilic Rod-shaped Nonsporulating Mesophile gram- Free living Chains, Singles Periodontitis Gingival crevices, Human oral microflora, Host Motile Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium difficile BACTERIAL Clostridium difficile NAP07 NAP07 Clostridium difficile NAP07 BEI HM-88 Unknown Gi03537 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525258 31439 SRS001930 004323_GCAT 219 14215 0 In progress 577340 Newbler/1.1.03.24 37.71X 172 0 0 0 USA Human feces Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Human fecal, Host, Human intestinal microflora Motile Non-Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium difficile BACTERIAL Clostridium difficile NAP08 NAP08 Clostridium difficile NAP08 BEI HM-89 Unknown Gi03538 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525259 31441 SRS001931 004324_GCAT 220 14215 0 In progress 492128 Newbler/1.1.03.24 26.94X 267 0 0 0 USA Human feces Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Human fecal, Host, Human intestinal microflora Motile Non-Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium BACTERIAL Clostridium glycyrrhizinilyticum Unknown Gi03539 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 342942 004325_GCAT 222 168711 0 Awaiting DNA 0 0 0 454, Sanger USA human feces 16858139 human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Human fecal, Host, Human intestinal microflora Motile Non-Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sp. BACTERIAL Clostridium sp. A1-86 A1-86 Unknown Gi03540 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 1506 004326_GCAT 237 14269 0 0 0 0 Sanger, 454 USA Human feces Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Singles, Pairs None Human fecal, Host, Human intestinal microflora Motile Non-Pathogen Chemoorganotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Candidatus Liberibacter Candidatus Liberibacter asiaticus BACTERIAL Candidatus Liberibacter asiaticus psy62 psy62 Candidatus Liberibacter asiaticus str. psy62 Gc01081 Gi03541 Genome Complete and Published Public Univ of Florida, BCM-HGSC USDA Highlander, SK sarahh@bcm.tmc.edu CLIBASIA 2009-08-12 Mol. Plant Microbe Interact. 22, 1011-1020 Plant Pathogen, Agricultural 537021 29835 004327_GCAT 360001 642979354 NC_012985 Complete Level 6: Finished Libasi_1.0 17x 1226 1162 1 0 36 USA Diaphorina citri strain Kuwayama (Asia citrus psyllid) Diaphorina citri 121845 adult Mesophile gram- Huanglongbing Host Pathogen Eukaryota Streptophyta Brassicales Brassicaceae Brassica EUKARYAL Brassica napus Tapidor Tapidor Brassica napus Tapidor Gi03542 Genome incomplete Public John Innes Centre, Beijing Genomics Institute 3708 30677 004328_GCAT 0 0 0 0 International unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Coral viriome from Healthy and Bleached corals from Healthy and Bleached corals Viral Metagenome from Healthy and Bleached Coral Gm00144 Metagenome complete Public SDSU Marhaver, KL kmarhaver@ucsd.edu 2008-08-29 Environ Microbiol 10, 2277-86 496922 28723 004329_GCAT 0 ABVT01000000, ABVU01000000 Complete 0 0 0 454 USA viral particles from the pooled tissue blastate of three healthy coral specimens collected at 3.7 m depth on the fringing reef at Mount Irvine Bay, Buccoo, Tobago 15-Mar-2005 Tobago viral particles from the pooled tissue blastate of three healthy coral specimens collected at 3.7 m depth on the fringing reef at Mount Irvine Bay, Buccoo, Tobago 11.1958 60.7983 3.7 m Diploria strigosa 89254 Symbiont unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial communities Sampling of Marine Metagenomes Gm00145 Metagenome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Environmental 408172 30501 004330_GCAT 0 0 0 0 454-FLX USA None Marine unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine Synechococcus communities from Coastal surface water at La Jolla CA from Coastal surface water at La Jolla CA Marine Synechococcus Metagenome Gm00146 Metagenome incomplete Public J. Craig Venter Institute Palenik B 408172 30445 004331_GCAT 0 SRA001124., ABVN01000000 In progress A concentrated marine picoplankton sample was by filtration between a size range of 0.45-2.0 .M, and Synechococcus cells were concentrated by flow cytometry 0 0 0 454 USA Coastal surface water was collected from the end of the pier located at the Scripps Institution of Oceanography, La Jolla, CA October 10, 2006 USA Coastal surface water was collected from the end of the pier located at the Scripps Institution of Oceanography, La Jolla, CA 32.868324 -117.252917 Mesophile None Marine unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Biogas-producing microbial community from a production-scale plant fermenter from a production-scale plant fermenter Gm00147 Metagenome complete Public Bielefeld Univ BMBF Schl|ter A Andreas.Schlueter@Genetik.Uni-Bielefeld.DE 2008-05-27 J Biotechnol 136, 77-90 Biotechnological 004332_GCAT 0 Complete 616072 Reganor, Gismo 57108 141664 0 0 454-FLX Germany Mesophile 7.7 None unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Wastewater treatment plant Plasmid pool from bacteria with reduced susceptibility to selected antimicrobial drugs from bacteria with reduced susceptibility to selected antimicrobial drugs Gm00148 Metagenome complete Public Bielefeld Univ Schl|ter A Andreas.Schlueter@Genetik.Uni-Bielefeld.DE 2008-04-08 J Biotechnol 136, 65-76 Environmental, Biotechnological 004333_GCAT 0 Complete 346427 36071 0 0 454-FLX Germany None Fresh water, Wastewater treatment plant unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil viral communities from Rice paddy at Daejon City from Rice paddy at Daejon City Rice Paddy Soil Viral Metagenome Gm00149 Metagenome complete Public KRIBB Bae JW 2008-08-20 Appl Environ Microbiology 74, 5975-85 Environmental, Biotechnological 410658 20811 004334_GCAT 0 ABQX01000000 Complete pUC118 0 0 0 454-FLX Korea Rice paddy soil at Daejon City, South Korea Jun-2007 Korea Rice paddy soil at Daejon City, South Korea 36.3875 127.3392 None Soil, Rice paddies Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori P12 P12 Helicobacter pylori P12 Gc00879 Genome Complete and Published Public Ludwig-Maximilians-Univ Fischer W fischer@mvp.uni-muenchen.de 2008-10-30 Unpublished Medical, Human Pathogen 570508 32291 004335_GCAT 361917 643348559 NC_011498 Complete 1673 1567 1 1 38.8 Germany clinical isolate obtained from a patient with duodenal ulcer clinical isolate obtained from a patient with duodenal ulcer Homo sapiens patient with duodenal ulcer Gastrointestinal tract Stomach Aerobe Spiral-shaped Nonsporulating Mesophile gram- Singles Gastric inflammation, Ulcer Host, Human stomach 37 Motile Pathogen Bacteria Tenericutes Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma melliferum BACTERIAL Spiroplasma melliferum KC3 KC3 Spiroplasma melliferum KC3 Gi03543 Genome incomplete Public RIPCM Agricultural 570509 32299 004336_GCAT 0 0 0 0 Russia Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Host 32 - 35 Motile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces filamentosus BACTERIAL Streptomyces roseosporus NRRL 11379 NRRL 11379 Streptomyces roseosporus NRRL 11379 NRRL 11379 Gi03544 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biotechnological, Antibiotic production 457430 32281 SRS001030) 004337_GCAT 0 NZ_ABYX00000000 Draft 7763 0 71.4 454-GS20, Sanger USA Aerobe Filament-shaped Sporulating Mesophile gram+ Filaments Soil Nonmotile Daptomycin producer Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae CCRI 1974 CCRI 1974 Streptococcus pneumoniae CCRI 1974 Gi03545 Genome incomplete Public McGill Univ Ouellette M Marc.Ouellette@crchul.ulaval.ca Medical, Human Pathogen 570507 32279 004338_GCAT 0 NZ_ABZC00000000 Draft 21x 2000 0 39 454-FLX Canada Marc Ouellette Homo sapiens Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram+ Chains, Pairs, Singles Pneumonia Host, Human nasopharyngeal microflora Nonmotile Pathogen Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Acidaminococcus Acidaminococcus intestini BACTERIAL Acidaminococcus intestini RYC-MR95 RYC-MR95 Acidaminococcus intestinalis RYC-MR95 Gi03548 Genome incomplete Public Ramsn y Cajal Univ Medical 568816 32215 004341_GCAT 0 0 0 0 Spain clinical strain isolated from material of a perianal abscess clinical strain isolated from material of a perianal abscess Homo sapiens Gastrointestinal tract Anaerobe Coccus-shaped Mesophile gram- Opportunistic infection Host, Human intestinal microflora Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus rhamnosus BACTERIAL Lactobacillus rhamnosus GG GG Lactobacillus rhamnosus GG ATCC 53103 No Gc01104 Gi03549 Genome Complete and Published Public Univ of Helsinki LGG 2009-09-02 PNAS in press Medical 568703 32195 004342_GCAT 0 NC_013198 Complete Level 6: Finished 3010 2944 1 0 46 Finland Human feces Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Mesophile gram+ Free living None Host Nonmotile Probiotic Bacteria Firmicutes Bacilli Lactobacillales Aerococcaceae Abiotrophia BACTERIAL Abiotrophia para-adiacens Unknown Gi03552 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 191553 004345_GCAT 2 15058 0 Targeted 0 0 0 USA Human airways sample Human airways sample Homo sapiens Airways Mesophile gram+ Free living Human airways, Host Bacteria Firmicutes Bacilli Lactobacillales Aerococcaceae BACTERIAL Abiotrophia sp. Unknown Gi03553 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 46123 004346_GCAT 3 0 Targeted 0 0 0 USA Human airways sample Human airways sample Homo sapiens Airways gram+ Free living Human airways, Host Bacteria Proteobacteria Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter BACTERIAL Achromobacter piechaudii ATCC 43553 ATCC 43553 ATCC 43553, LMG 6100, CIP 55774 Unknown Gi03555 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 72556 004348_GCAT 4 253191 0 0 0 0 USA Nose wound, France ATCC France Nose wound, France Homo sapiens Airways Nasal Mesophile gram- Host, Human airways Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Acidaminococcus Acidaminococcus sp. D21 BACTERIAL Acidaminococcus sp. D21 D21 Acidaminococcus sp. D21 BEI HM-81 Unknown Gi03556 Genome incomplete Public Broad Institute Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/seq/msc/ Medical, Human Microbiome Project (HMP) 563191 34117 004349_GCAT 8 643886056 ACGB00000000, NZ_ACGB00000000 Draft 13.02x 79 2238 2055 50 454 USA Human GI tract Emma Allen-Vercoe, U. Guelph, Canada Human GI tract Homo sapiens Gastrointestinal tract Intestinal tract Anaerobe Coccus-shaped Mesophile gram+ Free living None Host, Human intestinal microflora Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus BACTERIAL Actinobacillus ureae ATCC 25976 ATCC 25976 NCTC 10219, ATCC 25976 Yes Gi03558 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 723 004351_GCAT 27 106038 0 0 0 0 USA Human nasal sample ATCC Human nasal sample Homo sapiens Airways Nasal Facultative Rod-shaped Mesophile gram- Free living Pairs, Chains, Singles Human airways, Host, Respiratory tract Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinobaculum BACTERIAL Actinobaculum massiliae Unknown Gi03559 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 202789 004352_GCAT 42 71888 0 Targeted 0 0 0 USA Human skin sample with chronic wounds Human skin sample with chronic wounds Homo sapiens Chronic wounds Skin Mesophile gram+ Free living Chains, Pairs, Singles Host, Human skin Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae BACTERIAL Actinobaculum sp. W4079 W4079 Unknown Gi03560 Genome targeted Public Medical, Human Microbiome Project (HMP) 76833 004353_GCAT 43 0 0 0 0 USA Human oral sample Human oral sample Homo sapiens Oral Mesophile gram+ Chains, Pairs, Singles Host, Human oral microflora Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces BACTERIAL Actinomyces israelii BEI HM-98 Unknown Gi03562 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1659 004355_GCAT 46 HOMD: tax_id 645 26061 0 Targeted 0 0 0 USA Human oral sample Human oral sample Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Host, Human oral microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces BACTERIAL Actinomyces neuii Unknown Gi03563 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 33007 004356_GCAT 49 139969 0 Targeted 0 0 0 USA Human skin sample Blaser Human skin sample Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Periodontal infection, Actinomycosis, Gingivitis Host, Human skin Nonmotile Bacteria Proteobacteria Alphaproteobacteria alpha proteobacterium R2A130 BACTERIAL Ahrensia sp. R2A130 R2A130 alpha proteobacterium R2A130 Gi03564 Genome incomplete Public J. Craig Venter Institute Moore Foundation Suzuki M http://www.cbl.umces.edu/cms108/View-user-profile.html?user=80 Marine Microbial Initiative (MMI), Environmental 167025 004357_GCAT 638341070 0 0 0 Sanger USA ubsurface (10-m) water samples from station located 8 km west of the mouth of Yaquina Bay samples were collected in Niskin bottles USA 8 km west of the mouth of Yaquina Bay 44.653167 -124.178167 10 meters Mesophile gram- Free living None Marine Bacteria Proteobacteria Gammaproteobacteria marine gamma proteobacterium BB2AT2 BACTERIAL marine gamma proteobacterium BB2AT2 BB2AT2 Gi03565 Genome incomplete Public J. Craig Venter Institute Moore Foundation Bidle K bidle@imcs.rutgers.edu http://marine.rutgers.edu/ebme/html_docs/staff/Dr.%20Kay%20Bidle.htm Marine Microbial Initiative (MMI), Environmental 175918 004358_GCAT 0 0 0 0 USA Scripps Pier, California coast; attached to diatoms USA Scripps Pier, California coast; attached to diatoms 32.866667 -117.251389 Mesophile gram- Free living None Marine Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas sp. EZ55 BACTERIAL Alteromonas sp. EZ55 EZ55 Gi03566 Genome incomplete Public J. Craig Venter Institute Moore Foundation Zinser E ezinser@utk.edu http://www.bio.utk.edu/micro/faculty/zinser.html Marine Microbial Initiative (MMI), Environmental 537751 004359_GCAT 0 0 0 0 USA Equatorial Pacific co-cultured with Prochlorococcus strain from equatorial Pacific; also a "helper" strain for low density Prochlorococcus cultures Equatorial Pacific 0 -140 Surface Mesophile gram- Free living None Marine Bacteria Cyanobacteria Chroococcales Gloeothece Gloeothece membranacea BACTERIAL Gloeothece sp. PCC 6909/1 PCC 6909/1 PCC 6909/1 Gi03567 Genome incomplete Public J. Craig Venter Institute Moore Foundation van Keulen G g.van.keulen@swansea.ac.uk http://www.swan.ac.uk/staff/academic/EnvironmentSociety/BiologicalSciences/keuleng/ Environmental, Marine Microbial Initiative (MMI) 508746 004360_GCAT 269339 0 0 0 0 USA sheathless mutant of Gloeothece PCC6909 Aerobe Rod-shaped Mesophile gram- Free living None Marine Nitrogen fixation Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae marine bacterium SE62 BACTERIAL marine bacterium SE62 SE62 Gi03568 Genome incomplete Public Moore Foundation Buchan A abuchan@utk.edu http://www.bio.utk.edu/micro/faculty/buchan.html Marine Microbial Initiative (MMI), Environmental 164354 004361_GCAT 0 0 0 0 USA decaying salt marsh grass (Spartina), Sapelo Island, GA, USA USA decaying salt marsh grass (Spartina), Sapelo Island, GA, USA 31.39 -81.27 Anaerobe Mesophile gram- Free living None Marine Phototroph Bacteria Proteobacteria Epsilonproteobacteria Nautiliales Nautiliaceae Nautilia BACTERIAL Nautilia lithotrophica 525 525 Gi03569 Genome incomplete Public J. Craig Venter Institute Moore Foundation Campbell B bjc@udel.edu http://www.ocean.udel.edu/people/profile.aspx?bjc Marine Microbial Initiative (MMI), Environmental 128945 004362_GCAT 47236 0 0 0 0 USA 13oN, East Pacfic Rise 13oN, East Pacfic Rise Mesophile gram- Free living None Marine Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas sp. BG20 BACTERIAL Alteromonas sp. BG20 BG20 Gi03570 Genome incomplete Public J. Craig Venter Institute Moore Foundation Francis C http://pangea.stanford.edu/~caf/ Environmental, Marine Microbial Initiative (MMI) 535910 004363_GCAT 332103 638341172 0 0 0 Sanger USA Coastal/estuarine sediments (California) Surficial sediments beneath a 12-ft water column USA Coastal/estuarine sediments (California) Mesophile gram- Free living None Marine Bacteria Proteobacteria BACTERIAL Gammaproteobacteria sp. HIMB30 HIMB30 Gi03571 Genome incomplete Public J. Craig Venter Institute Moore Foundation Rappi M rappe@hawaii.edu http://www.soest.hawaii.edu/oceanography/faculty/rappe/RappeLab/Home.html Marine Microbial Initiative (MMI), Environmental 1236 004364_GCAT 0 0 0 0 Sanger USA South Kaneohe Bay, near MCBH, Oahu, Hawai USA South Kaneohe Bay, near MCBH, Oahu, Hawai 21.460467 -157.787657 Mesophile gram- Free living None Marine Bacteria Proteobacteria BACTERIAL Gammaproteobacteria sp. HIMB55 HIMB55 Gi03572 Genome incomplete Public J. Craig Venter Institute Moore Foundation Rappi M rappe@hawaii.edu http://www.soest.hawaii.edu/oceanography/faculty/rappe/RappeLab/Home.html Marine Microbial Initiative (MMI), Environmental 1236 004365_GCAT 0 0 0 0 Sanger USA Kaneohe Bay, Oahu, Hawaii USA Kaneohe Bay, Oahu, Hawaii 21.460467 -157.787657 Mesophile gram- Free living None Marine Bacteria Proteobacteria BACTERIAL Alphaproteobacteria sp. HIMB37 HIMB37 Gi03573 Genome incomplete Public J. Craig Venter Institute Moore Foundation Rappe M rappe@hawaii.edu http://www.soest.hawaii.edu/oceanography/faculty/rappe/RappeLab/Home.html Marine Microbial Initiative (MMI), Environmental 28211 004366_GCAT 0 0 0 0 Sanger USA Kaneohe Bay, Oahu, Hawai USA Kaneohe Bay, Oahu, Hawai 21.460467 -157.787657 Mesophile gram- Free living None Marine Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas marine bacterium Tw-2 BACTERIAL Pseudoalteromonas sp. Tw-2 Tw-2 Gi03574 Genome incomplete Public J. Craig Venter Institute Moore Foundation Bidle K bidle@imcs.rutgers.edu http://marine.rutgers.edu/ebme/html_docs/staff/Dr.%20Kay%20Bidle.htm Ecological, Marine Microbial Initiative (MMI), Environmental 156585 004367_GCAT 0 0 0 0 USA Scripps Pier, California coast; attached to diatoms USA Scripps Pier, California coast; attached to diatoms 32.866667 -117.251389 Mesophile gram- Free living None Coastal, Marine Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas BACTERIAL Pseudoalteromonas flavipulchra 2ta6 2ta6 Gi03575 Genome incomplete Public J. Craig Venter Institute Moore Foundation Allen E eallen@ucsd dot edu http://microbialoceans.ucsd.edu/ Ecological, Marine Microbial Initiative (MMI), Environmental 137779 004368_GCAT 26328 0 0 0 0 USA cleractinian corals (Montastrea annularis) in Floridian reef waters USA cleractinian corals (Montastrea annularis) in Floridian reef waters Mesophile gram- Free living None Coastal, Marine Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas BACTERIAL Pseudoalteromonas luteoviolacea 2ta16 2ta16 Gi03576 Genome incomplete Public J. Craig Venter Institute Moore Foundation Allen E eallen@ucsd dot edu http://microbialoceans.ucsd.edu/ Ecological, Marine Microbial Initiative (MMI), Environmental 43657 004369_GCAT 319852 0 0 0 0 USA cleractinian corals (Montastrea annularis) in Floridian reef waters USA cleractinian corals (Montastrea annularis) in Floridian reef waters Mesophile gram- Free living None Coastal, Marine Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae BACTERIAL Roseibium sp. TrichSKD4 TrichSKD4 Gi03577 Genome incomplete Public J. Craig Venter Institute Moore Foundation Mann E liz.mann@skio.usg.edu http://www.skio.peachnet.edu/people/mann/ Marine Microbial Initiative (MMI), Environmental 150830 004370_GCAT 0 0 0 0 USA Trichodesmium colonies from 30.33N, 78.53W USA Trichodesmium colonies 30.33 -78.53 Mesophile gram- None Host, Marine Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae BACTERIAL Roseobacter sp. R2A57 R2A57 Gi03578 Genome incomplete Public J. Craig Venter Institute Moore Foundation Suzuki M http://www.cbl.umces.edu/cms108/View-user-profile.html?user=80 Marine Microbial Initiative (MMI), Environmental 2433 004371_GCAT 0 0 0 0 USA Subsurface (10-m) water samples were collected in Niskinbottles at a station located 8 km west of the mouth of Yaquina Bay, Oreg. USA Subsurface (10-m) water samples were collected in Niskinbottles at a station located 8 km west of the mouth of Yaquina Bay, Oreg. 44.653167 -124.178167 10 meters Mesophile gram- None Host, Marine Bacteria Proteobacteria BACTERIAL Alphaproteobacteria sp. SAR11 HIMB64 HIMB64 Gi03579 Genome incomplete Public Moore Foundation Rappe M rappe@hawaii.edu http://www.soest.hawaii.edu/oceanography/faculty/rappe/RappeLab/Home.html Marine Microbial Initiative (MMI), Environmental 28211 004372_GCAT 0 0 0 0 USA Kaneohe Bay, Hawaii USA Kaneohe Bay, Hawaii 21.460467 -157.787657 Mesophile gram- Free living None Host, Marine Bacteria Proteobacteria BACTERIAL Alphaproteobacteria sp. SAR11 HIMB5 HIMB5 Gi03580 Genome incomplete Public J. Craig Venter Institute Moore Foundation Rappe M rappe@hawaii.edu http://www.soest.hawaii.edu/oceanography/faculty/rappe/RappeLab/Home.html Marine Microbial Initiative (MMI), Environmental 28211 004373_GCAT 0 0 0 0 USA Outside north channel, Kaneohe Bay, Oahu, Hawai USA Kaneohe Bay, Oahu, Hawai 21.460467 -157.787657 Mesophile gram- Free living None Host, Marine Bacteria Proteobacteria BACTERIAL Alphaproteobacteria sp. SAR11 HIMB58 HIMB58 Gi03581 Genome incomplete Public J. Craig Venter Institute Moore Foundation Rappe M rappe@hawaii.edu http://www.soest.hawaii.edu/oceanography/faculty/rappe/RappeLab/Home.html Marine Microbial Initiative (MMI), Environmental 28211 004374_GCAT 0 0 0 0 USA Kaneohe Bay, Oahu, Hawaii USA Kaneohe Bay, Oahu, Hawaii 21.460467 -157.787657 Mesophile gram- Free living None Host, Marine Bacteria Proteobacteria BACTERIAL Alphaproteobacteria sp. SAR11 HIMB114 HIMB114 Gi03582 Genome incomplete Public Moore Foundation Rappe M rappe@hawaii.edu http://www.soest.hawaii.edu/oceanography/faculty/rappe/RappeLab/Home.html Marine Microbial Initiative (MMI), Environmental 28211 004375_GCAT 0 0 0 0 USA Kaneohe Bay, Oahu, Hawaii USA Kaneohe Bay, Oahu, Hawaii 21.460467 -157.787657 Mesophile gram- Free living None Host, Marine Bacteria Proteobacteria BACTERIAL Alphaproteobacteria sp. SAR11 HIMB90 HIMB90 Gi03583 Genome incomplete Public Moore Foundation Rappe M rappe@hawaii.edu http://www.soest.hawaii.edu/oceanography/faculty/rappe/RappeLab/Home.html Marine Microbial Initiative (MMI), Environmental 28211 004376_GCAT 0 0 0 0 USA Kaneohe Bay, Oahu, Hawaii USA Kaneohe Bay, Oahu, Hawaii 21.460467 -157.787657 Mesophile gram- Free living None Host, Marine Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Sulfurospirillum Sulfurospirillum sp. Am-N BACTERIAL Sulfurospirillum sp. Am-N Am-N Gi03584 Genome incomplete Public J. Craig Venter Institute Moore Foundation Campbell B bjc@udel.edu http://www.ocean.udel.edu/people/profile.aspx?bjc Marine Microbial Initiative (MMI), Environmental 160628 004377_GCAT 19883 0 0 0 0 USA 13oN, East Pacfic Rise 13oN, East Pacfic Rise Mesophile gram- Free living None Host, Marine Bacteria Cyanobacteria Chroococcales Synechococcus Synechococcus sp. CB0205 BACTERIAL Synechococcus sp. CB0205 CB0205 Gi03585 Genome incomplete Public J. Craig Venter Institute Moore Foundation Chen F chenf@umbi.umd.edu http://www.umbi.umd.edu/comb/faculty-directory/chen/index.php Marine Microbial Initiative (MMI), Environmental 232363 004378_GCAT 0 0 0 0 USA Chesapeake Bay USA Chesapeake Bay 37.464527 -76.145368 Mesophile gram- Free living None Host, Marine Bacteria Cyanobacteria Chroococcales Synechococcus Synechococcus sp. CB0101 BACTERIAL Synechococcus sp. CB0101 CB0101 Gi03586 Genome incomplete Public J. Craig Venter Institute Moore Foundation Chen F chenf@umbi.umd.edu http://www.umbi.umd.edu/comb/faculty-directory/chen/index.php Marine Microbial Initiative (MMI), Environmental 232348 004379_GCAT 0 0 0 0 USA Chesapeake Bay USA Chesapeake Bay 37.464527 -76.145368 Mesophile gram- Free living None Host, Marine Bacteria Cyanobacteria Chroococcales Synechococcus Synechococcus sp. BACTERIAL Synechococcus sp. RCC1020 RCC1020 Gi03587 Genome incomplete Public J. Craig Venter Institute Moore Foundation Scanlan D d.j.scanlan@warwick.ac.uk http://www.bio.warwick.ac.uk/res/frame.asp?ID=60 Marine Microbial Initiative (MMI), Environmental 1131 004380_GCAT 0 0 0 0 USA South East Pacific, 136 059 'W 9 04 'S, station: HNL3 South East Pacific, station: HNL3 / 100m -9.06667 -136.98333 100 meters Mesophile gram- Free living None Host, Marine Bacteria Cyanobacteria Chroococcales Synechococcus Synechococcus sp. BACTERIAL Synechococcus sp. UW1 UW1 Gi03588 Genome incomplete Public J. Craig Venter Institute Moore Foundation Rocap G rocap@ocean.washington.edu http://rocaplab.ocean.washington.edu/people/gabrielle Marine Microbial Initiative (MMI), Environmental 1131 004381_GCAT 0 0 0 0 USA Hood Canal, Puget Sound, Washington USA Hood Canal, Puget Sound, Washington 47.644772 -122.861292 Mesophile gram- Free living None Host, Marine Bacteria Cyanobacteria Chroococcales Synechococcus Synechococcus sp. UW92 BACTERIAL Synechococcus sp. UW92 UW92 Gi03589 Genome incomplete Public J. Craig Venter Institute Moore Foundation Rocap G rocap@ocean.washington.edu http://rocaplab.ocean.washington.edu/people/gabrielle Marine Microbial Initiative (MMI), Environmental 337589 004382_GCAT 0 0 0 0 USA Sargasso Sea Sargasso Sea Mesophile gram- Free living None Host, Marine Bacteria Cyanobacteria Chroococcales Synechococcus Synechococcus sp. UW90 BACTERIAL Synechococcus sp. UW90 UW90 Gi03590 Genome incomplete Public J. Craig Venter Institute Moore Foundation Rocap G rocap@ocean.washington.edu http://rocaplab.ocean.washington.edu/people/gabrielle Marine Microbial Initiative (MMI), Environmental 368487 004383_GCAT 0 0 0 0 USA Sargasso Sea Sargasso Sea Mesophile gram- Free living None Host, Marine Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Rhodospirillaceae BACTERIAL Thalassospira sp. TrichSKD10 TrichSKD10 Gi03591 Genome incomplete Public J. Craig Venter Institute Moore Foundation Mann E liz.mann@skio.usg.edu http://www.skio.peachnet.edu/people/mann/ Marine Microbial Initiative (MMI), Environmental 168934 004384_GCAT 0 0 0 0 USA Trichodesmium colonies from 31.32N, 80.14W USA Trichodesmium colonies from 31.32N, 80.14W 31.32 -80.14 Mesophile gram- Free living None Host, Marine Bacteria Proteobacteria Betaproteobacteria Rhodocyclales Rhodocyclaceae Thauera BACTERIAL Thauera aromatica 3CB2 3CB2 Gi03593 Gi03592 Genome incomplete Public J. Craig Venter Institute Moore Foundation Song B http://people.uncw.edu/songb/ Marine Microbial Initiative (MMI), Environmental 59405 004385_GCAT 23705 0 0 0 0 USA Marine sediment, Arthur Kill, NJ USA Marine sediment, Arthur Kill, NJ 40.55515 -74.215865 Mesophile gram- Free living None Host, Marine Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales BACTERIAL Rhodobacteraceae bacterum KB2 KB2 Gi03615 Genome incomplete Public J. Craig Venter Institute Moore Foundation Song B http://people.uncw.edu/songb/ Marine Microbial Initiative (MMI), Environmental 31989 004408_GCAT 0 0 0 0 USA Karenia brevis culture Karenia brevis culture Mesophile gram- Free living None Host, Marine Phototroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae BACTERIAL Pseudomonas syringae syringae B728a B728a syringae Pseudomonas syringae pv. syringae B728a Gi03594 Genome incomplete Public The Sainsbury Laboratory Sequencing Technology Evaluation 205918 32555 004386_GCAT 637000224 Test the performance of de novo assembly methods on real 36nt Solexa data 0 0 0 United Kingdom Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plant rot Plants Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali BACTERIAL Pseudomonas syringae tabaci ATCC 11528 ATCC 11528 tabaci Pseudomonas syringae pv. tabaci ATCC 11528 ATCC 11528 Gi03595 Genome incomplete Public The Sainsbury Laboratory Plant Pathogen, Agricultural 573066 32261 004387_GCAT 637000224 NZ_ACHU00000000 Draft 12000 0 58 United Kingdom Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plant rot Plants Motile Pathogen Heterotroph Bacteria Synergistetes Synergistia Synergistales Synergistaceae Anaerobaculum Anaerobaculum hydrogeniformans BACTERIAL Anaerobaculum sp. OS1, ATCC BAA-1850 OS1, ATCC BAA-1850 Anaerobaculum hydrogeniformans ATCC BAA-1850 ATCC BAA-1850 Unknown Gi03596 Genome incomplete Public Washington Univ NIH Gordon J jgordon@wustl.edu http://genome.wustl.edu/info/contact_info.cgi Human Gut Microbiome Initiative (HGMI), Medical, Human Microbiome Project (HMP) 592015 33123 004388_GCAT 1705 0 NZ_ACJX00000000, ACJX00000000 Draft 317 2281 0 45 454, Sanger USA Human gut sample being submitted to ATCC Human gut sample Homo sapiens Gastrointestinal tract Feces Obligate anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human intestinal microflora Motile Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Anaerococcus BACTERIAL Anaerococcus prevotii Unknown Gi03597 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 33034 004389_GCAT 75 14276 0 Targeted 0 0 0 454-FLX, Illumina USA Human vaginal sample, normal flora Human vaginal sample, normal flora Homo sapiens Female Healthy Urogenital tract Vaginal Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs Host, Human vaginal microflora 37 Nonmotile Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Anaerococcus BACTERIAL Anaerococcus octavius Unknown Gi03598 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 54007 004390_GCAT 74 14290 0 Targeted 0 0 0 Illumina, 454-FLX USA Human skin sample Human skin sample Homo sapiens Skin Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs Host, Human skin 37 Nonmotile Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis BACTERIAL Anaerococcus sp. Unknown Gi03599 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 165779 004391_GCAT 76 175062 0 Targeted 0 0 0 454-FLX, Illumina USA Human skin sample with chronic wounds Human skin sample with chronic wounds Homo sapiens Chronic wounds Skin Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs Host, Human skin 37 Nonmotile Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Anaerococcus BACTERIAL Anaerococcus vaginalis ATCC 51170 ATCC 51170 ATCC 51170 Yes Gi03600 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 33037 38727 004392_GCAT 78 14288 0 ACXU00000000, NZ_ACXU00000000 Draft 35x 28 1875 1817 28 Illumina, 454-FLX USA Air sample ATCC Homo sapiens Chronic wounds Skin Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs Host 37 Nonmotile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Anaeroglobus BACTERIAL Anaeroglobus geminatus F0126 F0126 Unknown Gi03601 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 156456 004393_GCAT 80 14288 0 Targeted 0 0 0 Illumina, 454-FLX USA Human oral sample Human oral sample Homo sapiens Oral Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs Human airways, Host 37 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Atopobium Atopobium parvulum BACTERIAL Atopobium parvulum C836 C836 Unknown Gi03602 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 562979 38777 004394_GCAT 84 11383 0 In progress 0 0 0 USA Michael Surette, U. of Calgary, Canada Homo sapiens Airways Mesophile gram+ Free living Host, Human skin Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Atopobium BACTERIAL Atopobium vaginae CCUG 55226 CCUG 55226 CCUG 55226 Unknown Gi03603 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 82135 004395_GCAT 89 154739 0 0 0 0 USA Human vaginal sample associated with BV Human vaginal sample associated with BV Homo sapiens Female Patient with BV Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Bacterial vaginosis Host, Human vaginal microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae AP200 AP200 Streptococcus pneumoniae AP200 Gi03606 Genome incomplete Public Univ di Siena, Istituto di Teconologie Biomediche Medical, Human Pathogen 574093 32641 004399_GCAT 0 0 0 0 Italy clinical isolate from the cerebrospinal fluid of a patient with meningitis in Italy in 2003 2003 Italy Homo sapiens patient with meningitis Brain Cerebro-spinal fluid Facultative Coccus-shaped Nonsporulating Mesophile gram+ Chains, Pairs, Singles Pneumonia Host, Human nasopharyngeal microflora Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium animalis BACTERIAL Bifidobacterium animalis lactis V9 V9 Bifidobacterium animalis subsp. lactis V9 Gi03607 Genome incomplete Public Beijing Institute of Genomics Food industry, Biotechnological 573236 32515 004400_GCAT 0 0 0 0 China feces of healthy Mongolian infants in China China Homo sapiens Infant Healthy Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host, Intestinal microflora 39 - 40 Nonmotile Probiotic, Non-Pathogen Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Wolbachia Wolbachia endosymbiont of Culex quinquefasciatus BACTERIAL Wolbachia pipientis (Culex quinquefasciatus) JHB (Culex quinquefasciatus) JHB Wolbachia endosymbiont of Culex quinquefasciatus JHB Gc00962 Gi03608 Genome Complete and Published Public Univ of Maryland Salzberg SL salzberg@umiacs.umd.edu 2009-02-19 J. Bacteriology 191, 1725 Biotechnological 569881 32209 004401_GCAT 366564 642979308 NZ_ABZA00000000 Complete 14x 1542 1415 1 0 34 USA Trace Archive reads (+mates) that aligned to other Wolbachia finished genomes were identified and assembled them using a WGA approach Culex quinquefasciatus Aerobe Coccus-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Culex quinquefasciatus None Host, Insect endosymbiont Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Veillonella BACTERIAL Veillonella atypica PK1910 PK1910 Gi03609 Genome incomplete Public University of Oklahima Fengxia Qi felicia-qi@ouhsc.edu Medical 39777 004402_GCAT 0 Draft 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides BACTERIAL Bacteroides coagulans Unknown Gi03610 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 46507 004403_GCAT 112 160284 0 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Human fecal, Host, Human intestinal microflora Nonmotile Bacteria BACTERIAL Bacteroidetes sp. F0093 F0093 Unknown Gi03611 Genome incomplete Public NIH Medical, Human Microbiome Project (HMP) 976 004404_GCAT 155 0 0 0 0 USA Human oral sample Human oral sample Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile Free living Human airways, Host, Human oral microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium BACTERIAL Bifidobacterium dentium ATCC 27679 ATCC 27679 Bifidobacterium dentium Bd1 ATCC 27679 Unknown Gi03612 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 1689 004405_GCAT 168 12612 0 0 0 0 USA Human vaginal sample ATCC Human vaginal sample Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Host, Human vaginal microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae CCRI 1974M2 CCRI 1974M2 Streptococcus pneumoniae CCRI 1974M2 Gi03613 Genome incomplete Public McGill Univ Ouellette M Marc.Ouellette@crchul.ulaval.ca Medical, Human Pathogen 574965 32767 004406_GCAT 0 NZ_ABZT00000000 Draft 21x 1998 0 39 454-FLX Canada mutant variant Marc Ouellette mutant variant of strain CCRI 1874 Homo sapiens Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram+ Pairs, Singles, Chains Pneumonia Host, Human nasopharyngeal microflora Nonmotile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Leptospiraceae Leptospira Leptospira interrogans BACTERIAL Leptospira interrogans pomona IPAV IPAV LAI Leptospira interrogans serovar Lai str. IPAV Gi03614 Genome incomplete Public Shanghai Jiao Tong Univ Medical, Animal Pathogen 573825 32553 004407_GCAT 0 0 0 0 China high passage avirulent strain Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Leptospirosis Soil, Host, Fresh water Motile Pathogen Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae EUKARYAL Saccharomyces cerevisiae JAY291 JAY291 Saccharomyces cerevisiae JAY291 Gi03616 Genome incomplete Public Duke Univ Bioenergy, Ethanol production, Biotechnological, Biofuels 574961 32809 004409_GCAT 0 165x 0 0 0 Solexa, 454 USA haploid spore from the industrial diploid strain JAY270 Soil Cellulose degrader Eukaryota Ascomycota Sordariomycetes Sordariales Chaetomiaceae Thielavia Thielavia heterothallica EUKARYAL Myceliophthora thermophila ATCC 42464 ATCC 42464 Myceliophthora thermophila ATCC 42464 ATCC 42464 Gi03617 Genome incomplete Public DOE Joint Genome Institute DOE 573729 32775 32775 004410_GCAT 0 0 0 0 USA Thermophile Soil 25 - 55 Eukaryota Streptophyta Liliopsida Poales Poaceae Arundo EUKARYAL Arundo donax giant reed Arundo donax Gi03619 Genome incomplete Public Nandan Biomatrix Limited Koteswar K karanamkr@nandan.biz Agricultural 35708 32645 004412_GCAT 0 0 0 0 Eukaryota Streptophyta Malpighiales Euphorbiaceae Jatropha Jatropha tanjorensis EUKARYAL Jatropha tanjorensis Jatropha tanjorensis Gi03620 Genome targeted Public Nandan Biomatrix Limited Koteswar K karanamkr@nandan.biz Agricultural 454934 32639 004413_GCAT 0 0 0 0 Eukaryota Streptophyta Liliopsida Asparagales Agavaceae Chlorophytum EUKARYAL Chlorophytum borivilianum Chlorophytum borivilianum Gi03621 Genome targeted Public Nandan Biomatrix Limited Koteswar K karanamkr@nandan.biz Agricultural 503355 32619 004414_GCAT 0 0 0 0 Eukaryota Streptophyta Ericales Sapotaceae Madhuca Madhuca longifolia EUKARYAL Madhuca longifolia latifolia latifolia mahua Madhuca longifolia var. latifolia Gi03622 Genome targeted Public Nandan Biomatrix Limited Koteswar K karanamkr@nandan.biz Agricultural, Biotechnological, Biofuels 571269 32363 004415_GCAT 0 0 0 0 Eukaryota Streptophyta Malpighiales Euphorbiaceae Jatropha EUKARYAL Jatropha curcas Jatropha curcas Gi03623 Genome targeted Public Nandan Biomatrix Limited Koteswar K karanamkr@nandan.biz Agricultural, Biotechnological, Biofuels 180498 32339 004416_GCAT 0 0 0 0 Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Pichia Pichia stipitis EUKARYAL Pichia stipitis Shi21 Shi21 Pichia stipitis Shi21 Gr00008 Gi03624 Resequencing incomplete Public Boston College Marth G marth@bc.edu http://bioinformatics.bc.edu/marthlab/Main_Page Ethanol production, Bioenergy 564619 32053 004417_GCAT 0 0 0 0 Sanger USA derived from reference strain CBS 6054 Shi21 has been subjected to chemical mutagenesis, phenotypic selection, genetic engineering and adaptive evolution in order to develop strains improved for ethanol production. None Non-Pathogen Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Bilophila Bilophila sp. 4-1-30 BACTERIAL Bilophila sp. 4_1_30 4_1_30 Bilophila sp. 4-1-30 BEI HM-31 Unknown Gi03626 Genome incomplete Public Broad Institute Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 552394 004419_GCAT 178 0 DNA Received 0 0 0 USA Human feces Emma Allen-Vercoe, U. Guelph, Canada Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Mesophile gram- Free living Human fecal, Human intestinal microflora, Host Catalase positive Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiales bacterium 1_1_47 BACTERIAL Burkholderiales bacterium 1_1_47 1_1_47 Burkholderiales bacterium 1_1_47 BEI HM-33 Unknown Gi03627 Genome incomplete Public Broad Institute NIH-NIAID Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 469610 004420_GCAT 189 0 DNA Received 0 0 0 USA Human feces Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Mesophile gram- Free living Pneumonia Host Motile Pathogen Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Catonella Catonella morbi BACTERIAL Catonella morbi VPI D154F-12, ATCC 51271 VPI D154F-12, ATCC 51271 Catonella morbi ATCC 51271 ATCC 51271 Yes Gi03629 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu http://genome.wustl.edu/info/contact_info.cgi Medical, Human Microbiome Project (HMP) 592026 33121 004422_GCAT 200 14096 643886188 ACIL00000000, NZ_ACIL00000000 Complete 34.6x 20 2041 2010 46 454 USA gingival crevice of an adult patient with periodontitis Homo sapiens Patient with periodontal disease Oral Gingival crevices Mesophile gram+ Free living None Host Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Chryseobacterium Chryseobacterium sp. SK122 BACTERIAL Chryseobacterium sp. SK122, JCVIHMP086 SK122, JCVIHMP086 Chryseobacterium sp. SK122 BEI HM-108 Unknown Gi03630 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 596321 34089 004423_GCAT 205 207548 0 In progress 0 0 0 USA Human skin sample Homo sapiens Skin Left arm Aerobe Mesophile gram- Free living Human skin, Host Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sp. D5 BACTERIAL Clostridium sp. D5 D5 Clostridium sp. D5 BEI HM-84 Unknown Gi03631 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 556261 32459 004424_GCAT 240 0 In progress 0 0 0 USA Human feces Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Host Motile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micrococcaceae Arthrobacter BACTERIAL Arthrobacter arilaitensis re117, CIP108037 re117, CIP108037 Arthrobacter arilaitensis CIP108037, DSM 16368 Yes Gi03632 Genome incomplete Public Genoscope Genoscope Irlinger F. irlinger@grignon.inra.fr Food industry, Biotechnological 256701 004425_GCAT 99524 0 Complete 3800 3500 1 2 60.3 France Reblochon cheese in France in 1998 1998 France Reblochon cheese in France in 1998 Aerobe Rod-shaped Nonsporulating Mesophile Halotolerant gram+ Free living None Dairy isolate 30 Nonmotile Chlorophenol degrading Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium accolens (T) (T) Unknown Gi03633 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 38284 004426_GCAT 279 0 0 0 0 USA Human nasal sample Homo sapiens Airways Nasal Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host Nonmotile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium accolens ATCC 49726 ATCC 49726 ATCC 49726, CNCTC Th 4/63 Unknown Gi03634 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 38284 004427_GCAT 277 0 0 0 0 USA Human nasal sample from Prague, Czech Republic Czech republic Human nasal sample from Prague, Czech Republic 50.087811 14.42046 Homo sapiens Airways Nasal Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host Nonmotile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium appendicis BACTERIAL Corynebacterium appendicis JCVIHMP034 JCVIHMP034 Corynebacterium appendicis JCVIHMP034 Unknown Gi03635 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 553205 31411 004428_GCAT 283 0 In progress 0 0 0 USA Human skin sample Human skin sample Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Oral infection Oral microflora, Host 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter baumannii BACTERIAL Acinetobacter baumannii AB307-0294 AB307-0294 Acinetobacter baumannii AB307-0294 Gc00894 Genome Complete and Published Public COE SUNY-Buffalo Adams MD mda13@case.edu 2008-11-26 J Bacteriology 190, 8053-64 Medical 557600 30993 004429_GCAT 643348503 NC_011595 Complete 3760 3399 1 0 39 USA blood of a hospitalized patient in Buffalo, NY USA blood of a hospitalized patient in Buffalo, NY 42.886875 -78.877875 Homo sapiens Blood Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Nosocomial infection Host Nonmotile Pathogen Chemoheterotroph, Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter baumannii BACTERIAL Acinetobacter baumannii MDR-ZJ06 MDR-ZJ06 Acinetobacter baumannii MDR-ZJ06 Gi03636 Genome incomplete Public Zhejiang Univ Medical 497978 28333 004430_GCAT 0 0 0 0 China multidrug resistant strain Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Nosocomial infection Host Nonmotile Pathogen Heterotroph, Chemoheterotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax delafieldii BACTERIAL Acidovorax delafieldii 2AN 2AN Acidovorax delafieldii 2AN Gi03637 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Plant Pathogen, Agricultural 573060 32605 004431_GCAT 0 NZ_ACQT00000000 Draft 638 4842 4942 64 Sanger USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Soil, Fresh water Motile Iron oxidizer Eukaryota Microsporidia Nosematidae Nosema Nosema ceranae EUKARYAL Nosema ceranae BRL01 BRL01 Nosema ceranae BRL01 Gi03638 Genome incomplete Public USDA-ARS, 454 Life Sciences 578460 32971 004432_GCAT 0 ACOL00000000 Draft 25x 7680 2614 0 454 USA Spores from infected adult honey bees at the USDA-ARS Bee Research Laboratory, Beltsville, MD, USA USA Nosema Host Pathogen Eukaryota Basidiomycota Tremellomycetes Tremellales Tremellaceae Tremella Tremella mesenterica EUKARYAL Tremella mesenterica DSM 1558 DSM 1558 Tremella mesenterica DSM 1558 IFO 9311, ATCC 24925, DSM 1558, CBS 8224, NRRL Y-6157, NBRC 9311 Gi03639 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 578456 32829 32829 004433_GCAT 0 0 0 0 USA Alnus rubra Alnus rubra Eukaryota Chordata Mammalia Primates Hominidae Gorilla Gorilla gorilla EUKARYAL Gorilla gorilla Western Lowland Western Lowland gorilla Gorilla gorilla gorilla Western Lowland Gi03640 Genome-Regions incomplete Public Sanger Institute NIH-NHGRI 9595 31265 004434_GCAT 0 CABD00000000 Draft 2x 0 0 0 Sanger USA Kamillah (San Diego Zoo) Kamillah (San Diego Zoo) USA San Diego Zoo 32.736628 -117.14972 Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Veillonella BACTERIAL Veillonella parvula ATCC 17745 ATCC 17745 ATCC 17745 No Gi03641 Genome incomplete Public The Forsyth Institute Medical, Human Pathogen 29466 004435_GCAT 0 Draft 0 1898 38.4 454, Sanger USA Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs 37 Nonmotile Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Oribacterium Oribacterium sp. oral taxon 078 BACTERIAL Oribacterium sp. Oral Taxon 078 F0262 F0262 Oribacterium sp. oral taxon 078 str. F0262 BEI HM-11 Unknown Gi03642 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 608534 33167 004436_GCAT 6127 HOMD: tax_78 0 ACIQ00000000, NZ_ACIQ00000000 Draft 26.6x 107 2619 0 54 454 USA Human oral sample Izard/Dewhirst Human oral sample Homo sapiens Oral Rod-shaped Mesophile gram+ Free living Host Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Oribacterium Oribacterium sinus BACTERIAL Oribacterium sinus F0268 F0268 Oribacterium sinus F0268 BEI HM-13 Unknown Gi03643 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Medical, Human Microbiome Project (HMP) 585501 34635 004437_GCAT 6123 643886104 NZ_ACKX00000000, ACKX00000000 Complete Newbler/1.1.03.24 19.2X 254 2629 2683 43 454-FLX, Sanger USA Human oral sample BEI Human oral sample Homo sapiens Oral Rod-shaped Mesophile gram+ Free living Host Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium sp. BACTERIAL Corynebacterium sp. AY581888 AY581888 Corynebacterium appendicis Unknown Gi03646 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1720 004440_GCAT 286 0 Targeted 0 0 0 USA Human skin sample Blaser Human skin sample Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Oral infection Oral microflora, Host 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium animalis BACTERIAL Bifidobacterium animalis lactis Bl-04, ATCC SD5219 Bl-04, ATCC SD5219 Bifidobacterium animalis subsp. lactis Bl-04 ATCC SD5219 Gc00988 Gi03645 Genome Complete and Published Public Danisco, Penn State Univ 2009-04-17 J. Bacteriology 191, 4144-4151 Food industry, Biotechnological 580050 32897 004439_GCAT 0 , NC_012814 Complete Level 6: Finished 1938 1631 1 0 60 USA feces of healthy Mongolian infants in China China Homo sapiens Healthy Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host, Intestinal microflora Nonmotile Non-Pathogen, Probiotic Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Dermabacteraceae Brachybacterium BACTERIAL Brachybacterium sp. Brachybacterium muris Gi03647 Genome incomplete Public Univ of Salzburg 219301 33181 004441_GCAT 0 0 0 0 USA liver of the laboratory mouse strain C3H/He 14657129 liver of the laboratory mouse strain C3H/He Mus musculus Liver Anaerobe Coccus-shaped Mesophile gram+ Free living Host Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter baumannii BACTERIAL Acinetobacter baumannii AB900 AB900 Acinetobacter baumannii AB900 Gi03648 Genome incomplete Public COE SUNY-Buffalo Medical 557601 30995 004442_GCAT 0 NZ_ABXK00000000 Draft 18x 68 3910 0 38 454-FLX China perineal isolate from Buffalo, NY multidrug resistant strain 2003 USA perineal isolate from Buffalo, NY 42.886875 -78.877875 Homo sapiens Gastrointestinal tract Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Nosocomial infection Host Nonmotile Pathogen Heterotroph, Chemoheterotroph Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Anaplasmataceae Anaplasma Anaplasma centrale BACTERIAL Anaplasma marginale Israel Israel Anaplasma centrale str. Israel Gi03649 Genome incomplete Public Washington State Univ Animal Pathogen, Medical, Cattle Pathogen 574556 32765 004443_GCAT 0 0 0 0 USA South Africa Aerobe Coccus-shaped Mesophile gram- Singles Anaplasmosis, Bovine anaplasmosis Host Pathogen Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Atopobium Atopobium vaginae BACTERIAL Atopobium vaginae JCVIHMP018 JCVIHMP018 Atopobium vaginae JCVIHMP018 Unknown Gi03650 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Pathogen, Human Microbiome Project (HMP) 553187 31389 004444_GCAT 93 0 In progress 0 0 0 USA Human skin sample Blaser Homo sapiens Skin Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Bacterial vaginosis Host, Human vaginal microflora Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Atopobium Atopobium vaginae BACTERIAL Atopobium vaginae JCVIHMP019 JCVIHMP019 Atopobium vaginae JCVIHMP019 Unknown Gi03651 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Human Microbiome Project (HMP), Medical, Human Pathogen 553188 31391 004445_GCAT 92 0 In progress 0 0 0 USA Human vaginal sample Wilson/White Homo sapiens Urogenital tract Vaginal Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Bacterial vaginosis Human vaginal microflora, Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis CDC 684 CDC 684 Bacillus anthracis str. CDC 684 NRRL 3495, NRS 234 Gc00984 Gi03652 Genome Complete and Published Public LANL, J. Craig Venter Institute NIH-NIAID JCVI BAMEG 2009-04-20 Unpublished Biothreat, Medical, Human Pathogen 568206 31329 004446_GCAT 643692006 NC_012581 Complete Level 6: Finished 5230 5717 1 2 35 USA Karen Hill, khill@lanl.gov Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Anthrax Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus 03BB102 03BB102 Bacillus cereus 03BB102 Gc00975 Gi03653 Genome Complete and Published Public J. Craig Venter Institute JCVI BCA 2009-03-30 Unpublished Biothreat, Medical, Human Pathogen 572264 31307 004447_GCAT 643692007 NC_012472 Complete Level 6: Finished 5269 5566 1 1 35 Sanger USA blood of a 39 year old San Antonio, Texas welder who died as a result of a severe pneumonia Paul Jackson, jackson80@llnl.gov USA blood of a 39 year old San Antonio, Texas welder who died as a result of a severe pneumonia 29.425037 -98.493722 Homo sapiens 39 years old Died from pneumonia Blood Facultative Rod-shaped Sporulating Mesophile gram+ Free living Pneumonia Host, Soil Motile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella abortus BACTERIAL Brucella abortus 86/8/59 86/8/59 2 Brucella abortus bv. 2 str. 86/8/59 NCTC 10501 Gi03654 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biothreat, Medical, Mammal Pathogen, Human Pathogen 520450 33031 004448_GCAT 0 NZ_ACBJ00000000 Draft 42.43x 3255 0 57 USA bovine fetus in 1959 1959 bovine fetus in 1959 Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Spontaneous abortion Host 37 Nonmotile Pathogen, Intracellular pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella abortus BACTERIAL Brucella abortus Tulya Tulya 3 Brucella abortus bv. 3 str. Tulya ATCC 23450, BCCN R6 Gi03655 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biothreat, Medical, Mammal Pathogen, Human Pathogen 520451 33029 004449_GCAT 0 NZ_ACBI00000000 Draft 43.28x 3259 0 57 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Spontaneous abortion Host 37 Nonmotile Pathogen, Intracellular pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella abortus BACTERIAL Brucella abortus 292 292 4 Brucella abortus bv. 4 str. 292 NCTC 10503, BCCN R7, ATCC 23451 Gi03656 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biothreat, Medical, Mammal Pathogen, Human Pathogen 520452 33027 004450_GCAT 0 NZ_ACBH00000000 Draft 31.71x 3254 0 57 USA bovine fetus in 1960 1960 bovine fetus in 1960 Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Clusters, Singles Spontaneous abortion Host 37 Nonmotile Intracellular pathogen, Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella abortus BACTERIAL Brucella abortus 870 870 6 Brucella abortus bv. 6 str. 870 ATCC 23453, BCCN R9 Gi03657 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biothreat, Medical, Mammal Pathogen, Human Pathogen 520454 33025 004451_GCAT 0 NZ_ACBG00000000 Draft 40.74x 3251 0 57 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Clusters Spontaneous abortion Host 37 Nonmotile Pathogen, Intracellular pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella suis BACTERIAL Brucella suis 686 686 3 Brucella suis bv. 3 str. 686 BCCN R14, NCTC 10511, ATCC 23446 Gi03658 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biothreat, Medical, Mammal Pathogen, Human Pathogen 520487 33035 004452_GCAT 0 NZ_ACBL00000000 Draft 24.85x 3267 0 57 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Spontaneous abortion Host 37 Nonmotile Intracellular pathogen, Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella suis BACTERIAL Brucella suis 513 513 5 Brucella suis bv. 5 str. 513 BCCN R21, NCTC 11996 Gi03659 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biothreat, Medical, Mammal Pathogen, Human Pathogen 520489 33033 004453_GCAT 0 NZ_ACBK00000000 Draft 30.43x 3286 0 57 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Chains, Singles Spontaneous abortion Host 37 Nonmotile Intracellular pathogen, Pathogen Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga gingivalis BACTERIAL Capnocytophaga gingivalis ATCC 33624 ATCC 33624 Capnocytophaga gingivalis ATCC 33624 ATCC 33624 Unknown Gi03661 Genome incomplete Public J. Craig Venter Institute NIH, HMP JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 553178 31387 004455_GCAT 196 643886113 ACLQ00000000, NZ_ACLQ00000000 Complete 37x 37 2667 2644 40 454 USA Human oral flora Dewhirst Homo sapiens Oral Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Periodontitis Human oral microflora, Gingival crevices, Host Motile Pathogen Chemoorganotroph Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Chitinophaga Chitinophaga sp. JCVIHMP009 BACTERIAL Chitinophaga sp. AJ318177, JCVIHMP009 AJ318177, JCVIHMP009 Chitinophaga sp. JCVIHMP009 Unknown Gi03662 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 553170 31375 004456_GCAT 203 0 In progress 0 0 0 USA Blaser Homo sapiens Skin Mesophile gram- Free living Human skin, Host Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis A2497 A2497 Chlamydia trachomatis A2497 Gi03663 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Animal Pathogen, Medical, Human Pathogen 580047 32651 004457_GCAT 0 0 0 0 United Kingdom 2.5-year-old with intense active trachoma in Tanzania. Tanzania 2.5-year-old with intense active trachoma in Tanzania. Homo sapiens 2.5 years old Pateint with intense active trachoma Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Host Nonmotile Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium difficile BACTERIAL Clostridium difficile gs gs Clostridium difficile gs Gi03665 Genome incomplete Public Univ of Arizona Medical, Human Pathogen 566472 31207 004459_GCAT 0 0 0 0 USA Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Colitis, Diarrhea Host Motile Chemoorganotroph Bacteria Deinococcus-Thermus Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. JCVIHMP004 BACTERIAL Deinococcus sp. AJ549111, JCVIHMP004 AJ549111, JCVIHMP004 Deinococcus sp. JCVIHMP004 Unknown Gi03666 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 553164 31365 004460_GCAT 317 0 In progress 0 0 0 USA Human skin sample Blaser Homo sapiens Skin Aerobe Coccus-shaped Mesophile Free living None Host, Human skin Nonmotile Radiation resistant Bacteria Deinococcus-Thermus Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. JCVIHMP005 BACTERIAL Deinococcus sp. Y11329, JCVIHMP005 Y11329, JCVIHMP005 Deinococcus sp. JCVIHMP005 BCRC 17376, DSM 3963, CCM 3997, ATCC 43672 Yes Gi03667 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 553166 31367 004461_GCAT 318 0 In progress 0 0 0 USA Intestines of Cyprinus carpio, Tokyo, Japan Blaser Japan Tokyo, Japan 35.689488 139.691706 Homo sapiens Skin Aerobe Coccus-shaped Mesophile Free living None Host, Human skin Nonmotile Radiation resistant Bacteria Deinococcus-Thermus Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus grandis BACTERIAL Deinococcus grandis SK125 SK125 Deinococcus grandis SK125 BEI HM-111 Unknown Gi03668 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 596310 34069 004462_GCAT 315 0 In progress 0 0 0 USA Human skin sample Blaser Homo sapiens Skin Left arm Aerobe Coccus-shaped Mesophile Free living None Human skin, Host Nonmotile Radiation resistant Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae BACTERIAL Neisseria gonorrhoeae 1291 1291 Neisseria gonorrhoeae 1291 Gi03670 Genome incomplete Public Broad Institute Medical 528345 32783 004464_GCAT 0 NZ_ABZF00000000 Draft 37.90x 2033 0 52 USA Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Gonorrhea Host Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae BACTERIAL Neisseria gonorrhoeae 35/02 35/02 IB-1 Neisseria gonorrhoeae 35/02 Gi03671 Genome incomplete Public Broad Institute Medical 528346 32785 004465_GCAT 0 NZ_ABZG00000000 Draft 2043 0 52 USA reduced susceptibility to cefixime and ceftriaxone Sweden Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Gonorrhea Host Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae BACTERIAL Neisseria gonorrhoeae DGI18 DGI18 Neisseria gonorrhoeae DGI18 Gi03672 Genome incomplete Public Broad Institute Medical 528347 32789 004466_GCAT 0 NZ_ABZH00000000 Draft 2035 0 52 USA Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Gonorrhea Host Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae BACTERIAL Neisseria gonorrhoeae FA19 FA19 Neisseria gonorrhoeae FA19 Gi03673 Genome incomplete Public Broad Institute Medical 528352 32793 004467_GCAT 0 NZ_ABZJ00000000 Draft 2099 0 52 USA penicillin-sensitive strain Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Gonorrhea Host Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae BACTERIAL Neisseria gonorrhoeae FA6140 FA6140 Neisseria gonorrhoeae FA6140 Gi03674 Genome incomplete Public Broad Institute Medical 528353 32791 004468_GCAT 0 NZ_ABZI00000000 Draft 2033 0 52 USA outbreak of gonorrhea in North Carolina resistant to penicillin and tetracycline USA outbreak of gonorrhea in North Carolina Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Gonorrhea Host Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae BACTERIAL Neisseria gonorrhoeae MS11 MS11 Neisseria gonorrhoeae MS11 Gi03675 Genome incomplete Public Broad Institute Medical 528354 32795 004469_GCAT 0 NZ_ABZK00000000 Draft 2098 0 52 USA experimental strain Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Gonorrhea Host Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae BACTERIAL Neisseria gonorrhoeae PID1 PID1 Neisseria gonorrhoeae PID1 Gi03676 Genome incomplete Public Broad Institute Medical 528355 32799 004470_GCAT 0 NZ_ABZM00000000 Draft 2091 0 52 USA cervical isolate from a case of pelvic inflammatory disease Homo sapiens Female Patient with pelvic inflammatory disease Urogenital tract Cervix Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Gonorrhea Host Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae BACTERIAL Neisseria gonorrhoeae PID18 PID18 Neisseria gonorrhoeae PID18 Gi03677 Genome incomplete Public Broad Institute Medical 528356 32797 004471_GCAT 0 NZ_ABZL00000000 Draft 2083 0 52 USA cervical isolate from a case of pelvic inflammatory disease Homo sapiens Female Patient with pelvic inflammatory disease Urogenital tract Cervix Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Gonorrhea Host Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae BACTERIAL Neisseria gonorrhoeae PID24-1 PID24-1 Neisseria gonorrhoeae PID24-1 Gi03678 Genome incomplete Public Broad Institute Medical 528357 32801 004472_GCAT 0 NZ_ABZN00000000 Draft 2033 0 52 USA Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Gonorrhea Host Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae BACTERIAL Neisseria gonorrhoeae PID332 PID332 Neisseria gonorrhoeae PID332 Gi03679 Genome incomplete Public Broad Institute Medical 528358 32803 004473_GCAT 0 NZ_ABZO00000000 Draft 2101 0 52 USA cervical isolate from a case of pelvic inflammatory disease cervical isolate from a case of pelvic inflammatory disease Homo sapiens Female Patient with pelvic inflammatory disease Urogenital tract Cervix Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Gonorrhea Host Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae BACTERIAL Neisseria gonorrhoeae SK-92-679 SK-92-679 Neisseria gonorrhoeae SK-92-679 Gi03680 Genome incomplete Public Broad Institute Medical 528359 32805 004474_GCAT 0 NZ_ABZP00000000 Draft 2064 0 52 USA blood of a patient with disseminated gonococcal infection blood of a patient with disseminated gonococcal infection Homo sapiens Patient with disseminated gonococcal infection Blood Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Gonorrhea Host Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae BACTERIAL Neisseria gonorrhoeae SK-93-1035 SK-93-1035 Neisseria gonorrhoeae SK-93-1035 Gi03681 Genome incomplete Public Broad Institute Medical 528360 32807 004475_GCAT 0 NZ_ABZQ00000000 Draft 2049 0 52 USA blood of a patient with disseminated gonococcal infection blood of a patient with disseminated gonococcal infection Homo sapiens Patient with disseminated gonococcal infection Blood Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Gonorrhea Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella melaninogenica BACTERIAL Prevotella melaninogenica JCVIHMP012 JCVIHMP012 Prevotella melaninogenica JCVIHMP012 Unknown Gi03682 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 553173 31381 004476_GCAT 661 90223 0 In progress CA 5.1 16X 79 0 0 0 USA Human skin sample Blaser Human skin sample Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Oral infection, Periodontal infection Human oral microflora, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Propionibacterium Propionibacterium granulosum BACTERIAL Propionibacterium granulosum JCVIHMP029 JCVIHMP029 Propionibacterium granulosum JCVIHMP029 Unknown Gi03683 Genome incomplete Public J. Craig Venter Institute JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 553200 31403 004477_GCAT 678 0 In progress 0 0 0 USA Human skin Blaser Human skin Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Opportunistic infection Human skin, Host Nonmotile Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. D11 BACTERIAL Fusobacterium sp. D11 D11 Fusobacterium sp. D11 BEI HM-75 Unknown Gi03685 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 556264 32501 004479_GCAT 679 0 NZ_ACDS00000000, ACDS00000000 Draft 17.22x 355 2343 2446 26.9 454 USA Human gastrointestinal tract sample Emma Allen-Vercoe, U. Guelph, Canada Human gastrointestinal tract sample Homo sapiens Gastrointestinal tract Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Opportunistic infection Host, Human skin Nonmotile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas gessardii BACTERIAL Pseudomonas gessardii JCVIHMP046 JCVIHMP046 Pseudomonas gessardii JCVIHMP046 Unknown Gi03686 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 553216 31337 004480_GCAT 710 0 In progress 0 0 0 USA Human vaginal sample Wilson/White Human vaginal sample Homo sapiens Female Urogenital tract Vaginal Mesophile gram- Free living Host, Vagina microflora Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micrococcaceae Rothia Rothia dentocariosa BACTERIAL Rothia dentocariosa JCVIHMP031 JCVIHMP031 Rothia dentocariosa JCVIHMP031 Unknown Gi03687 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 553202 31407 004481_GCAT 735 0 In progress 0 0 0 USA Human skin sample Blaser Human skin sample Homo sapiens Skin Coccus-shaped Mesophile gram+ Free living Meningitis, Endocarditis, Opportunistic infection, Periodontitis Human oral microflora, Host Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micrococcaceae Rothia BACTERIAL Rothia dentocariosa ATCC 17931 ATCC 17931 ATCC 17931, CDC X599 Yes Gi03689 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 2047 004483_GCAT 733 0 0 0 0 USA Human oral sample ATCC Human oral sample Homo sapiens Oral Teeth Coccus-shaped Mesophile gram+ Free living Periodontitis, Opportunistic infection, Meningitis, Endocarditis Host, Human oral microflora Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micrococcaceae Rothia BACTERIAL Rothia aeria Unknown Gi03690 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 172042 004484_GCAT 732 0 Targeted 0 0 0 USA Human skin sample Blaser Human skin sample Homo sapiens Skin Coccus-shaped Mesophile gram+ Free living Periodontitis, Opportunistic infection, Meningitis, Endocarditis Host, Human skin Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micrococcaceae Rothia BACTERIAL Rothia mucilaginosa Unknown Gi03691 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 43675 004485_GCAT 740 0 Targeted 0 0 0 USA Human skin sample Blaser Human skin sample Homo sapiens Skin Coccus-shaped Mesophile gram+ Free living Periodontitis, Endocarditis, Meningitis, Opportunistic infection Host, Human skin Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica KMR78 KMR78 Schwarzengrund Salmonella enterica subsp. enterica serovar Schwarzengrund str. KMR78 Gi03692 Genome incomplete Public Medical, Human Pathogen 565039 31189 004486_GCAT 0 In progress 0 0 0 Sanger Korea diarrheal patients during 2001-2004 in Gwangju area, Korea 2001-2004 Korea Gwangju area, Korea 35.159545 126.852601 Homo sapiens Patient with diarrhea Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Host, Food, Fresh water, Soil Motile Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis BACTERIAL Streptococcus mitis JCVIHMP040 JCVIHMP040 Streptococcus mitis JCVIHMP040 Unknown Gi03693 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 553210 31417 004487_GCAT 829 0 In progress 0 0 0 USA Human skin sample Blaser Human skin sample Homo sapiens Skin Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Endocarditis Oral microflora, Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis BACTERIAL Staphylococcus epidermidis M23864:W1 M23864:W1 Staphylococcus epidermidis M23864:W1 BEI HM-143 Unknown Gi03694 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525378 34647 004488_GCAT 793 236219 0 ACJB00000000, NZ_ACJB00000000 Complete Newbler/2.0-011609 9.9X 78 2611 2622 33 Illumina, 454-FLX USA Human skin sample Homo sapiens Skin Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Host Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis BACTERIAL Staphylococcus epidermidis W23144 W23144 Staphylococcus epidermidis W23144 BEI HM-142 Unknown Gi03696 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525376 34655 004490_GCAT 791 236219 0 NZ_ACJC00000000, ACJC00000000 Complete Newbler/1.1.03.24 35.14X 192 2579 2622 31 Sanger, Illumina, 454 USA Human skin sample Homo sapiens Skin Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Host Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis BACTERIAL Staphylococcus epidermidis M23590 M23590 Staphylococcus epidermidis M23590 BEI HM-141 Unknown Gi03697 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525377 34653 004491_GCAT 790 236219 0 In progress Newbler/1.1.03.24 194 0 0 0 USA Human skin sample Homo sapiens Skin Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Host Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis BACTERIAL Staphylococcus epidermidis CONS, HMP0060 CONS, HMP0060 Staphylococcus epidermidis BCM-HMP0060 BEI HM-140 Unknown Gi03698 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525374 31545 SRS001957 004492_GCAT 789 HOMD: tax_601 236219 0 NZ_ACHE00000000, ACHE00000000 Complete Newbler/2.0.00.20 32.76X 115 5100 2575 0 454 USA Human skin sample Homo sapiens Skin Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Host Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus TCH130/ST-72 TCH130/ST-72 Staphylococcus aureus subsp. aureus 130/ST-72 NR-10130 Unknown Gi03700 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Human Microbiome Project (HMP), Medical, Human Pathogen 548474 31541 SRS001955 004494_GCAT 774 0 NZ_ACHD00000000, ACHD00000000 Complete 449622 Newbler/1.1.03.24 43.18X 284 2765 2923 32 454-FLX, Illumina USA Human skin sample BEI Homo sapiens Skin Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Singles, Clusters Pneumonia, Septicemia Host 30 - 37 Nonmotile Pathogen, Meticillin resistant Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus TCH70 TCH70 Staphylococcus aureus subsp. aureus TCH70 BEI HM-139 Unknown Gi03701 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Human Microbiome Project (HMP), Medical, Human Pathogen 548475 31543 SRS001954 004495_GCAT 773 0 NZ_ACHH00000000, ACHH00000000 Draft 207063 Newbler/12.0.00.20 18.37X 147 1822 2928 32 454-FLX, Illumina USA Human skin sample Homo sapiens Skin Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus TCH60 TCH60 Staphylococcus aureus subsp. aureus TCH60 NR-10129 Unknown Gi03702 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Human Microbiome Project (HMP), Medical, Human Pathogen 548473 31539 004496_GCAT 772 643886136 NZ_ACHC00000000, ACHC00000000 Draft 395462 Newbler/1.1.03.24 32.76X 65 2779 2805 32 Illumina, 454-FLX USA Human skin sample BEI Homo sapiens Skin Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 30 - 37 Nonmotile Pathogen, Meticillin resistant Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium spiritivorum BACTERIAL Sphingobacterium spiritivorum ATCC 33861 ATCC 33861 Sphingobacterium spiritivorum ATCC 33861 NCTC 11386, JCM 1277, ATCC 33861, CDC E7288 Yes Gi03705 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Medical, Human Microbiome Project (HMP) 525373 31531 SRS001953 004499_GCAT 766 0 NZ_ACHA00000000, ACHA00000000 Draft 483847 Newbler/1.1.03.24 23.09X 141 5082 4626 39.8 454-FLX, GSS USA Human vaginal sample from Kansas ATCC USA Homo sapiens Female Urogenital tract Vaginal Mesophile gram- Free living Host Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes AA216 AA216 Streptococcus pyogenes AA216 Gi03706 Genome incomplete Public Univ of Maryland, IGS Medical, Human Pathogen 562016 31299 004500_GCAT 0 0 0 0 Sanger USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Rheumatic fever Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes AA472 AA472 Streptococcus pyogenes AA216 Gi03707 Genome incomplete Public Univ of Maryland, IGS Medical, Human Pathogen 562018 31311 SRS000972 004501_GCAT 0 0 0 0 Sanger USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Rheumatic fever Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes SS1447 SS1447 Streptococcus pyogenes AA216 Gi03708 Genome incomplete Public Univ of Maryland, IGS Medical, Human Pathogen 562017 31301 SRS000948 004502_GCAT 0 In progress 0 0 0 Sanger USA Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Rheumatic fever Host Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces ghanaensis BACTERIAL Streptomyces ghanaensis ATCC 14672 ATCC 14672 Streptomyces ghanaensis ATCC 14672 ATCC 14672 Gi03710 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 566461 32145 SRS000982 004504_GCAT 0 NZ_ABYA00000000 Draft 11.6x 8223 0 72 Aerobe Sporulating Mesophile gram+ Free living None Soil Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces filamentosus BACTERIAL Streptomyces roseosporus NRRL 15998 NRRL 15998 Streptomyces roseosporus NRRL 15998 NRRL 15998 Gi03711 Genome incomplete Public Broad Institute Biotechnological, Antibiotic production 457431 32147 004505_GCAT 0 NZ_ABYB00000000 Draft 11.4x 7560 0 71.4 Sanger, 454-GS20 USA Aerobe Filament-shaped Sporulating Mesophile gram+ Free living Filaments Soil Nonmotile Daptomycin producer Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella ceti BACTERIAL Brucella ceti M13/05/1 M13/05/1 Brucella ceti M13/05/1 Gi03712 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biothreat, Medical, Mammal Pathogen, Human Pathogen 520460 33043 004506_GCAT 0 NZ_ACBP00000000 Draft 32.47x 3288 0 57 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Brucellosis Host 37 Nonmotile Pathogen, Intracellular pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella ceti BACTERIAL Brucella ceti M644/93/1 M644/93/1 Brucella ceti M644/93/1 Gi03713 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biothreat, Medical, Mammal Pathogen, Human Pathogen 520459 33041 004507_GCAT 0 NZ_ACBO00000000 Draft 38.28x 3283 0 57 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Brucellosis Host 37 Nonmotile Pathogen, Intracellular pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella pinnipedialis BACTERIAL Brucella pinnipedialis B2/94 B2/94 Brucella pinnipedialis B2/94 NCTC 12890, BCCN 94-73 Gi03714 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biothreat, Medical, Mammal Pathogen, Human Pathogen 520461 33039 004508_GCAT 0 NZ_ACBN00000000 Draft 39.43x 94 3347 0 57 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Brucellosis Host 37 Nonmotile Pathogen, Intracellular pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella pinnipedialis BACTERIAL Brucella pinnipedialis M163/99/10 M163/99/10 Brucella pinnipedialis M163/99/10 Gi03715 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biothreat, Medical, Mammal Pathogen, Human Pathogen 520463 33037 004509_GCAT 0 NZ_ACBM00000000 Draft 29.43x 418 3256 0 57 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Brucellosis Host 37 Nonmotile Intracellular pathogen, Pathogen Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. D12 BACTERIAL Fusobacterium sp. D12 D12 Fusobacterium sp. D12 BEI HM-76 Unknown Gi03716 Genome incomplete Public Broad Institute Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 556263 32485 004510_GCAT 411 0 NZ_ACDG00000000, ACDG00000000 Draft 15.34x 224 2081 0 35.2 454 USA Human gastrointestinal tract Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium coyleae Unknown Gi03718 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 53374 004512_GCAT 287 0 Targeted 0 0 0 USA Human skin sample Blaser Human skin sample Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Oral infection Oral microflora, Host 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium durum Unknown Gi03719 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 61592 004513_GCAT 289 0 Targeted 0 0 0 USA Human skin sample Blaser 9336915 Human skin sample Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Oral infection Host, Human skin 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium glaucum Unknown Gi03720 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 187491 004514_GCAT 292 0 In progress 0 0 0 USA Human skin sample Blaser 12807190 Human skin sample Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Oral infection Oral microflora, Host 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium jeikeium BACTERIAL Corynebacterium jeikeium ATCC 43734 ATCC 43734 Corynebacterium jeikeium ATCC 43734 ATCC 43734 Yes Gi03721 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525262 31445 SRS001986 004515_GCAT 297 0 In progress Newbler/2.0-011609 11.8X 967 2784 0 0 454-FLX, Illumina USA Healthy human ATCC Healthy human Homo sapiens Healthy Urogenital tract Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Urogenital tract, Host 37 Nonmotile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium mucifaciens BACTERIAL Corynebacterium mucifaciens JCVIHMP037 JCVIHMP037 Corynebacterium mucifaciens JCVIHMP037 Unknown Gi03722 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 553208 31413 004516_GCAT 302 0 0 0 0 USA Human skin sample Human skin sample Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Oral infection Oral microflora, Host 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli 83972 83972 Escherichia coli 83972 BEI HM-50 Unknown Gi03725 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525281 31467 SRS001965 004519_GCAT 358 270795 643886067 NZ_ACGN00000000, ACGN00000000 Draft Newbler/1.1.03.24 25.58X 202 5066 5380 50 USA Human urine sample Homo sapiens Urogenital tract Urine Urinary tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K-12, MG1655 K-12, MG1655 OR:H48:K- Escherichia coli str. K-12 substr. MG1655 ATCC 700926 Unknown Gi03726 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 511145 34663 004520_GCAT 359 270795 0 DNA Received 0 0 0 USA derived from parent strain W1485 by acridine orange curing of the F plasmid ATCC Homo sapiens Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs None Host, Human intestinal microflora 37 Motile Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium Eubacterium saphenum BACTERIAL Eubacterium saphenum ATCC 49989 ATCC 49989 ATCC 49989 Yes Gi03727 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu http://genome.wustl.edu/info/contact_info.cgi Medical, Human Microbiome Project (HMP) 592031 33149 004521_GCAT 377 69909 0 NZ_ACON00000000, ACON00000000 Draft 61.6x 5 1084 0 40 454 USA Human periodontal pocket ATCC 49989 Human periodontal pocket Homo sapiens Oral Periodontal Anaerobe Rod-shaped Mesophile gram+ Free living Host Bacteria Firmicutes Bacilli Bacillales Gemella Gemella sanguinis BACTERIAL Gemella sanguinis JCVIHMP043 JCVIHMP043 Gemella sanguinis JCVIHMP043 Unknown Gi03728 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 553213 31421 004522_GCAT 436 0 In progress 0 0 0 USA Human skin sample Blaser Human skin sample Homo sapiens Skin Facultative Coccus-shaped Mesophile gram+ Free living Chains, Pairs Dental plaque, Opportunistic infection Host, Human oral microflora Motile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis BACTERIAL Streptococcus mitis SK597 SK597 Streptococcus mitis SK597 Gi03729 Genome incomplete Public Univ of Maryland, IGS Medical, Human Pathogen 585204 33357 004523_GCAT 0 0 0 0 USA Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Endocarditis Host, Oral microflora Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis BACTERIAL Streptococcus mitis SK564 SK564 Streptococcus mitis SK564 Gi03730 Genome incomplete Public Univ of Maryland, IGS Medical, Human Pathogen 585203 33355 004524_GCAT 0 0 0 0 USA Mogens Kilian, Aarhus University, Denmark Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Endocarditis Host, Oral microflora Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis BACTERIAL Streptococcus mitis SK321 SK321 Streptococcus mitis SK321 Gi03731 Genome incomplete Public Univ of Maryland, IGS Medical, Human Pathogen 585202 33353 004525_GCAT 0 0 0 0 USA Mogens Kilian, Aarhus University, Denmark Congo Homo sapiens Oral Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Endocarditis Host, Oral microflora Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica CVM36720 CVM36720 Newport Salmonella enterica subsp. enterica serovar Newport str. CVM36720 Gi03732 Genome incomplete Public Univ of Maryland, IGS Medical, Human Pathogen 585201 33351 004526_GCAT 0 0 0 0 USA Tomato associated outbreak strain Patrick McDermott, National Antimicrobial Resistance Monitoring System, Center for Veterinary Medicine Homo sapiens Oral gram- Free living Host Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces sp. H668 BACTERIAL Streptomyces sp. H668 H668 Streptomyces sp. H668 Gi03733 Genome incomplete Public Univ of Maryland, IGS 585200 33349 004527_GCAT 0 0 0 71 USA Russell T. Hill, Center of Marine Biotechnology, University of Maryland Biotechnology Institute, Baltimore, MD Aerobe Filament-shaped Sporulating Mesophile gram+ Free living Filaments None Soil Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptosporangiaceae Astrosporangium BACTERIAL Astrosporangium hypotensionis K-26 K-26 Astrosporangium hypotensionis K-26 Gi03734 Genome incomplete Public Univ of Maryland, IGS 404933 33235 004528_GCAT 0 0 0 0 USA Brian O. Bachmann, Vanderbilt University Chemistry Department, Nashville, TN, USA gram+ Free living None Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae BACTERIAL Rhodobacteraceae bacterum KLH11 KLH11 Rhodobacteraceae bacterium KLH11 Gi03735 Genome incomplete Public J. Craig Venter Institute JCVI 467661 31351 004529_GCAT 0 NZ_ACCW00000000 Draft 7.99x 48 4487 4330 57 USA the sponge Mycale laxissima at a depth of 20 meters in Key Largo, Florida, USA. Russell T. Hill, Center of Marine Biotechnology, University of Maryland Biotechnology Institute, Baltimore, MD symbiont of the marine sponge Mycale laxissima USA Key Largo, Florida, USA. 25.119109 -80.417838 20 meters Mesophile gram- Symbiotic Mycale laxissima None Host, Marine Phototroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Gordoniaceae Gordonia BACTERIAL Gordonia bronchialis Unknown Gi03736 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 2054 004530_GCAT 441 0 Targeted 0 0 0 USA Human skin sample Blaser Homo sapiens Skin Aerobe Rod-shaped Mesophile gram+ Free living Filaments Human skin, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Gordoniaceae Gordonia BACTERIAL Gordonia terrae Unknown Gi03737 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 2055 004531_GCAT 443 0 Targeted 0 0 0 USA Human skin sample Blaser Homo sapiens Skin Aerobe Rod-shaped Mesophile gram+ Free living Filaments Human skin, Host Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Kingella Kingella oralis BACTERIAL Kingella oralis UB-38, ATCC 51147 UB-38, ATCC 51147 Kingella oralis ATCC 51147 ATCC 51147, CCUG 30450 Yes Gi03745 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 629741 33145 004539_GCAT 477 643886193 NZ_ACJW00000000, ACJW00000000 Complete 30x 12 2405 3222 54 454 USA Human dental plaque ATCC 51147 8347509 Homo sapiens Oral Periodontal Rod-shaped Mesophile gram- Free living None Host Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micrococcaceae Kocuria BACTERIAL Kocuria palustris Unknown Gi03746 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 71999 004540_GCAT 488 0 Targeted 0 0 0 USA Human skin Blaser 10028258 Homo sapiens Skin Aerobe Sphere-shaped Mesophile gram+ Free living Singles, Tetrads None Human skin, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micrococcaceae Kocuria BACTERIAL Kocuria rhizophila Unknown Gi03747 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 72000 004541_GCAT 489 0 Targeted 0 0 0 USA Human skin Blaser 10028258 Homo sapiens Skin Aerobe Sphere-shaped Mesophile gram+ Free living Singles, Tetrads None Human skin, Host Nonmotile Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Lachnospiraceae oral taxon 107 BACTERIAL Lachnospiraceae sp. Oral Taxon 107 F0167 F0167 Lachnospiraceae oral taxon 107 str. F0167 BEI HM-7 Unknown Gi03749 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 575593 004543_GCAT 491 HOMD: tax_107 0 DNA Received 0 0 0 USA Human oral sample Izard/Dewhirst Homo sapiens Oral Mesophile gram+ Free living Host Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus brevis BACTERIAL Lactobacillus brevis gravesensis ATCC 27305 ATCC 27305 Lactobacillus brevis subsp. gravesensis ATCC 27305 ATCC 27305 Unknown Gi03750 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525310 31481 SRS001933 004544_GCAT 496 HOMD: tax_558 643886059 ACGG00000000, NZ_ACGG00000000 Complete Newbler/1.1.03.24 29.67X 178 3077 3106 40 Illumina, 454-FLX USA fermented beverages(wine) ATCC Homo sapiens Gastrointestinal tract Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Host Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus buchneri BACTERIAL Lactobacillus buchneri ATCC 11577 ATCC 11577 Lactobacillus buchneri ATCC 11577 ATCC 11577 Unknown Gi03751 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525318 31483 SRS001934 004545_GCAT 497 643886062 ACGH00000000, NZ_ACGH00000000 Complete Newbler/1.1.03.24 51.19X 165 2858 3065 39 454-FLX, Illumina USA fermented beverages(wine) ATCC Homo sapiens Gastrointestinal tract Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Host Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus fermentum BACTERIAL Lactobacillus fermentum ATCC 14931 ATCC 14931 Lactobacillus fermentum ATCC 14931 NCIB 11840, ATCC 14931 Yes Gi03753 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525325 31485 SRS001938 004547_GCAT 511 643886061 ACGI00000000, NZ_ACGI00000000 Draft Newbler/1.1.03.24 41.32X 145 1796 1929 52.8 454-FLX, Illumina USA fermented beets ATCC Homo sapiens Gastrointestinal tract Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Host, Human vaginal microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus gasseri BACTERIAL Lactobacillus gasseri SJ-9E-US SJ-9E-US Lactobacillus gasseri SJ-9E-US Unknown Gi03752 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 575603 004546_GCAT 516 35597 0 DNA Received 0 0 0 USA Human vaginal isolate Qiang Xu, Osel Inc. Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus hilgardii BACTERIAL Lactobacillus hilgardii ATCC 8290 ATCC 8290 Lactobacillus hilgardii ATCC 8290 ATCC 8290 Yes Gi03754 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525327 31489 SRS001932 004548_GCAT 519 139964 643886044 NZ_ACGP00000000, ACGP00000000 Draft Newbler/1.1.03.24 55.29X 233 2619 2854 38 Illumina, 454-FLX USA fermented beverages(wine) ATCC Homo sapiens Gastrointestinal tract Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus paracasei BACTERIAL Lactobacillus paracasei ATCC 25302 ATCC 25302 Lactobacillus paracasei subsp. paracasei ATCC 25302 R094, ATCC 25302, NCDO 151 Yes Gi03755 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525337 31513 SRS001935 004549_GCAT 530 643886051 ACGY00000000, NZ_ACGY00000000 Complete Newbler/1.1.03.24 36.91X 174 2885 3103 46 Illumina, 454-FLX USA ATCC Homo sapiens Gastrointestinal tract Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus plantarum BACTERIAL Lactobacillus plantarum ATCC 14917 ATCC 14917 Lactobacillus plantarum subsp. plantarum ATCC 14917 IAM 12477, ATCC 14917 Yes Gi03756 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525338 31515 SRS001943 004550_GCAT 531 643886053 NZ_ACGZ00000000, ACGZ00000000 Draft Newbler/1.1.03.24 36.35X 109 3214 3277 44 454-FLX, Illumina USA Pickled cabbage ATCC Homo sapiens Gastrointestinal tract Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Host Nonmotile Bacteria BACTERIAL Tagetibacter soli Ellin 5290 Ellin 5290 Gi03757 Genome incomplete Public DOE Joint Genome Institute DOE 142182 004551_GCAT 0 0 0 0 USA Free living None Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces griseoflavus BACTERIAL Streptomyces griseoflavus Tu4000 Tu4000 Streptomyces griseoflavus Tu4000 Gi03758 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biotechnological, Medical 467200 33609 004552_GCAT 0 NZ_ACFA00000000 Draft 8.7x 927 7364 0 71 Sanger Anaerobe Filament-shaped Sporulating Mesophile gram+ Free living None Soil Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces hygroscopicus BACTERIAL Streptomyces hygroscopicus ATCC 53653 ATCC 53653 Streptomyces hygroscopicus ATCC 53653 ATCC 53653 Yes Gi03759 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Anti-tumor agent, Medical, Biotechnological 457427 33605 004553_GCAT 0 NZ_ACEX00000000 Draft 6.1x 783 10466 0 71 Sanger soil, India India Aerobe Filament-shaped Sporulating Mesophile gram+ Free living None Soil Nonmotile Himastatin producer Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces lividans BACTERIAL Streptomyces lividans TK24 TK24 Streptomyces lividans TK24 Gi03760 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biotechnological, Medical 457428 33603 004554_GCAT 0 NZ_ACEY00000000 Draft 6.1x 333 8190 0 72 Sanger USA Aerobe Filament-shaped Sporulating Mesophile gram+ Free living None Soil Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces sp. e14 BACTERIAL Streptomyces sp. e14 e14 Streptomyces sp. e14 Gi03761 Genome incomplete Public Broad Institute Biotechnological, Medical 645465 38051 004555_GCAT 0 0 0 0 USA Aerobe Sporulating Mesophile gram+ Free living None Soil Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces sp. AA4 BACTERIAL Streptomyces sp. AA4 AA4 Streptomyces sp. AA4 Gi03762 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Biotechnological 591158 33599 004556_GCAT 0 NZ_ACEV00000000 Draft 10.9x 98 9152 0 69 Sanger USA Aerobe Filament-shaped Sporulating Mesophile gram+ Free living None Soil Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces sp. SPB78 BACTERIAL Streptomyces sp. SPB78 SPB78 Streptomyces sp. SPB78 Gi03763 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Biotechnological 591157 33597 004557_GCAT 0 NZ_ACEU00000000 Draft 8.98x 694 6897 0 72 Sanger USA Aerobe Filament-shaped Sporulating Mesophile gram+ Free living None Soil Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces viridochromogenes BACTERIAL Streptomyces viridochromogenes DSM 40736 DSM 40736 Streptomyces viridochromogenes DSM 40736 DSM 40736 No Gi03764 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Biotechnological 591159 33607 004558_GCAT 0 NZ_ACEZ00000000 Draft 7.77x 226 8548 0 71 Sanger USA Aerobe Filament-shaped Sporulating Mesophile gram+ Free living None Soil Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Pseudonocardiaceae Kutzneria Kutzneria sp. 744 BACTERIAL Kutzneria sp. 744 744 Kutzneria sp. 744 Gi03765 Genome incomplete Public Broad Institute Medical, Biotechnological 345341 38053 004559_GCAT 0 0 0 0 USA mycorrhizal root tips of Norway spruce seedlings Aerobe Sporulating Mesophile gram+ Free living None Soil Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micromonosporaceae Micromonospora BACTERIAL Micromonospora carbonacea var. africana ATCC 39149 ATCC 39149 africana Micromonospora sp. ATCC 39149 ATCC 39149, SCC 1413, NRRL 15099 Gi03766 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Antibiotic production, Biotechnological, Medical 219305 33595 004560_GCAT 0 NZ_ACES00000000 Draft 7.8x 339 6505 0 72 USA soil in Kenya Kenya Aerobe Filament-shaped Sporulating Mesophile gram+ Free living Filaments None Soil Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micromonosporaceae Micromonospora Micromonospora sp. M42 BACTERIAL Micromonospora sp. M42 M42 Gi03767 Genome incomplete Public Broad Institute Biotechnological, Medical 457406 38049 004561_GCAT 0 0 0 0 USA Aerobe Sporulating Mesophile gram+ Free living None Soil Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces sp. FXJ52 BACTERIAL Streptomyces sp. FXJ52 FXJ52 Streptomyces sp. FXJ52 Gi03768 Genome incomplete Public Broad Institute Biotechnological, Medical 546894 004562_GCAT 0 0 0 0 Aerobe Sporulating Mesophile gram+ Free living None Soil Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus reuteri BACTERIAL Lactobacillus reuteri MM2-3 MM2-3 Lactobacillus reuteri MM2-3 Unknown Gi03770 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Medical, Human Microbiome Project (HMP), Biotechnological, Food industry 585517 34627 004564_GCAT 535 643886027 NZ_ACLB00000000, ACLB00000000 Complete Newbler/1.1.03.24 38.75X 167 1943 2105 38 Sanger, 454-FLX USA Homo sapiens Gastrointestinal tract Feces Microaerophilic Rod-shaped Mesophile gram+ Free living None Human intestinal microflora, Host, Birds intestinal microflora, Mammalian intestinal microflora Nonmotile Probiotic, Non-Pathogen Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus rhamnosus BACTERIAL Lactobacillus rhamnosus Lc 705 Lc 705 Gc01105 Gi03771 Genome Complete and Published Public Univ of Helsinki LC705 2009-09-02 PNAS in press Biotechnological, Food industry 568704 32197 004565_GCAT 0 NC_013199 Complete Level 6: Finished 2968 2913 1 1 46 Finland Homo sapiens Gastrointestinal tract Feces Microaerophilic Rod-shaped Mesophile gram+ Free living None Birds intestinal microflora, Mammalian intestinal microflora, Human intestinal microflora, Host Nonmotile Non-Pathogen, Probiotic Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus ruminis BACTERIAL Lactobacillus ruminis E 194e, ATCC 25644 E 194e, ATCC 25644 Lactobacillus ruminis ATCC 25644 ATCC 25644 Unknown Gi03772 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Biotechnological, Food industry, Human Microbiome Project (HMP), Medical 525362 31499 SRS001945 004566_GCAT 542 643886045 ACGS00000000, NZ_ACGS00000000 Draft Newbler/1.1.03.24 39.72x 169 2081 2332 43.7 Illumina, 454-FLX USA Human intestine ATCC Homo sapiens Gastrointestinal tract Feces Microaerophilic Rod-shaped Mesophile gram+ Free living None Birds intestinal microflora, Mammalian intestinal microflora, Human intestinal microflora, Host Nonmotile Probiotic, Non-Pathogen Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus salivarius Unknown Gi04736 Gi03774 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1624 004568_GCAT 544 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Microaerophilic Rod-shaped Mesophile gram+ Free living None Human airways, Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus vaginalis BACTERIAL Lactobacillus vaginalis ATCC 49540 ATCC 49540 Lactobacillus vaginalis ATCC 49540 ATCC 49540, NCTC 12197 Yes Gi03861 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Human Microbiome Project (HMP), Medical 525366 31507 SRS001950 004655_GCAT 549 643886050 ACGV00000000, NZ_ACGV00000000 Complete Newbler/1.1.03.24 48.03X 202 1806 1937 40.6 Illumina, 454-FLX USA Vagina of patient with trichomoniasis ATCC Homo sapiens Female Patient with trichomoniasis Urogenital tract Vaginal Microaerophilic Rod-shaped Mesophile gram+ Free living None Host Nonmotile Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Leptotrichia Leptotrichia hofstadii BACTERIAL Leptotrichia hofstadii F0254 F0254 BEI HM-9 Unknown Gi03776 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 634994 33151 004570_GCAT 5525 HOMD: tax_224 0 ACVB00000000, NZ_ACVB00000000 Draft 25.1x 67 2441 0 30 454 USA Human oral isolate Izard/Dewhirst Human oral isolate Homo sapiens Oral Anaerobe Rod-shaped Mesophile gram- Free living Chains, Filaments Human oral microflora, Host, Oral microflora Nonmotile Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria BACTERIAL Listeria innocua Unknown Gi03777 Genome incomplete Public Washington Univ NIH-NIAID WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 1642 004571_GCAT 557 100113 0 0 0 0 USA Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Chains, Singles Food poisoning, Listeriosis Intestinal microflora, Fresh water, Food, Soil Motile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Mobiluncus Mobiluncus curtisii BACTERIAL Mobiluncus curtisii curtisii ATCC 35421 ATCC 35421 Mobiluncus curtisii subsp. curtisii ATCC 35421 ATCC 35421, BV 345-16 Unknown Gi03779 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Human Microbiome Project (HMP), Medical 585198 34631 004573_GCAT 574 95111 0 In progress 0 0 0 USA Human vagina ATCC Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Mesophile gram+ Free living Host Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Mobiluncus Mobiluncus curtisii BACTERIAL Mobiluncus curtisii holmesii BEI HM-132 Unknown Gi03780 Genome targeted Public Human Microbiome Project (HMP), Medical 144178 004574_GCAT 575 0 Targeted 0 0 0 USA Human skin Blaser Homo sapiens Skin Anaerobe Rod-shaped Mesophile gram+ Free living Host, Human skin Bacteria Proteobacteria Betaproteobacteria Burkholderiales Oxalobacteraceae Oxalobacter Oxalobacter formigenes BACTERIAL Oxalobacter formigenes DSM 4420 DSM 4420 DSM 4420 No Gi03781 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Human Microbiome Project (HMP), Medical 649759 38327 004575_GCAT 613 7369 0 0 0 0 USA Human feces DSM 4420 Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Mesophile gram- Free living Host, Intestinal microflora Oxalic acid degrader Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Parabacteroides Parabacteroides sp. D13 BACTERIAL Parabacteroides sp. D13 D13 Parabacteroides sp. D13 BEI HM-77 Unknown Gi03832 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Human Microbiome Project (HMP), Medical 563193 38359 004626_GCAT 619 0 NZ_ACPW00000000, ACPW00000000 Draft 23.06x GeneMark, Glimmer, Metagene 74 5327 0 45 Sanger, 454-FLX USA Human feces Emma Allen-Vercoe, U. Guelph, Canada Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Human intestinal microflora, Human fecal, Host Nonmotile Non-Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Peptoniphilus Peptoniphilus lacrimalis BACTERIAL Peptoniphilus lacrimalis 315-B 315-B Peptoniphilus lacrimalis 315-B BEI HM-134 Unknown Gi03782 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Human Microbiome Project (HMP), Medical 596330 34107 004576_GCAT 628 0 In progress 0 0 0 USA Human vaginal isolate Homo sapiens Urogenital tract Vaginal Anaerobe Mesophile gram+ Free living None Host, Human oral microflora 37 Bacteria Firmicutes Clostridia Clostridiales Peptostreptococcaceae Peptostreptococcus Peptostreptococcus stomatis BACTERIAL Peptostreptococcus stomatis DSM 17678 DSM 17678 Peptostreptococcus stomatis DSM 17678 DSM 17678, CCUG 51858 Yes Gi03783 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 596315 34073 004577_GCAT 634 89770 0 In progress 0 0 0 USA Dento-alveolar abscess; United Kingdom Dewhirst United Kingdom Homo sapiens Oral Anaerobe Coccus-shaped Mesophile gram+ Free living Host Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella bivia BACTERIAL Prevotella bivia JCVIHMP010 JCVIHMP010 Prevotella bivia JCVIHMP010 Unknown Gi03784 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 553171 31377 004578_GCAT 648 0 In progress 0 0 0 USA Wilson/White Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Oral infection, Periodontal infection Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella bivia BACTERIAL Prevotella bivia JCVIHMP011 JCVIHMP011 Prevotella bivia JCVIHMP011 Unknown Gi03785 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 553172 31379 004579_GCAT 647 0 In progress 0 0 0 USA Human skin sample Blaser Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Oral infection, Periodontal infection Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella buccae ATCC 33574 ATCC 33574 ATCC 33574, VPI D3A-6 Yes Gi03787 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 28126 004581_GCAT 6485 0 DNA Received 0 0 0 USA human gingival crevice with moderate periodontitis ATCC human gingival crevice with moderate periodontitis Homo sapiens Oral Gingival crevices Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella buccalis ATCC 35310 ATCC 35310 BEI HM-137, ATCC 35310, DSM 20616, NCDO 2354 Yes Gi03788 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 28127 004582_GCAT 650 0 DNA Received 0 0 0 USA dental plaque Sharon Hillier Homo sapiens Female Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Periodontal infection, Oral infection Human oral microflora, Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella corporis UP3008 UP3008 Unknown Gi03789 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 28128 004583_GCAT 652 0 Targeted 0 0 0 USA Human vaginal flora Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Oral infection, Periodontal infection Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella disiens Unknown Gi03790 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 28130 004584_GCAT 654 0 Targeted 0 0 0 USA Human skin Blaser Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Oral infection, Periodontal infection Host, Human skin Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella disiens ATCC 29426 ATCC 29426 NCTC 11157, VPI 8057, EUH N-1304-72B, ATCC 29426 Yes Gi03791 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 28130 004585_GCAT 653 0 0 0 0 USA ATCC 29426 Homo sapiens Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Oral infection, Periodontal infection Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. BACTERIAL Prevotella sp. L16476 L16476 Unknown Gi03792 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 59823 004586_GCAT 657 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. BACTERIAL Prevotella sp. Genogroup 2 UP3027-1 UP3027-1 Unknown Gi03793 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 59823 004587_GCAT 655 0 Targeted 0 0 0 USA Human vaginal isolate Homo sapiens Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. BACTERIAL Prevotella sp. Genogroup 4 UP2050-3 UP2050-3 Unknown Gi03794 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 59823 004588_GCAT 656 0 Targeted 0 0 0 USA Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella oralis ATCC 33269 ATCC 33269 NCTC 11459, VPI D27B-24, ATCC 33269 Yes Gi03796 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 28134 004590_GCAT 663 0 Targeted 0 0 0 USA human periodontal pocket Homo sapiens Oral Periodontal Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae BACTERIAL Streptococcus agalactiae Camel Camel Streptococcus agalactiae str. Camel Gi03798 Genome incomplete Public Univ of Maryland, IGS Medical, Human Pathogen 588121 33547 004592_GCAT 0 0 0 0 Sanger USA camel udder abscess Richard Bishop, International Livestock Research Institute, Kenya Kenya Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Septicemia, Meningitis, Pneumonia Host 37 Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis T1 T1 Enterococcus faecalis T1 Gi03799 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 565636 32915 004593_GCAT 0 NZ_ACAD00000000 Draft 33.13x 2905 0 37 454 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Urinary infection, Bacteremia, Endocarditis Host Nonmotile Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis T2, Sapporo-603 T2, Sapporo-603 Enterococcus faecalis T2 Gi03800 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 565637 32917 004594_GCAT 0 NZ_ACAE00000000 Draft 28.36x 121 3204 0 37 454 USA urine in Sapporo, Japan Japan Sapporo, Japan 43.062096 141.354376 Homo sapiens Urogenital tract Urine Urinary tract Facultative Nonsporulating Mesophile gram+ Free living Urinary infection, Bacteremia, Endocarditis Host Nonmotile Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis T3, Sapporo-109 T3, Sapporo-109 Enterococcus faecalis T3 Gi03801 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 565638 32919 004595_GCAT 0 NZ_ACAF00000000 Draft 39.35x 2783 0 37 USA urine in Sapporo, Japan Japan Sapporo, Japan 43.062096 141.354376 Homo sapiens Urogenital tract Urine Urinary tract Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Urinary infection, Bacteremia, Endocarditis Host Nonmotile Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis ATCC 4200 ATCC 4200 Enterococcus faecalis ATCC 4200 ATCC 4200 Gi03802 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 565642 32923 004596_GCAT 0 NZ_ACAG00000000 Draft 26.51x 83 3008 0 37 454 USA blood of patient with rheumatic fever Homo sapiens Patient with rheumatic fever Blood Facultative Nonsporulating Mesophile gram+ Free living Urinary infection, Bacteremia, Endocarditis Host Nonmotile Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis AR01/DG AR01/DG Enterococcus faecalis AR01/DG Gi03803 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 565651 32929 004597_GCAT 0 NZ_ACAK00000000 Draft 37.91x 2821 0 37 454, Sanger USA dog with mastitis Canis lupus familiaris Patient with mastitis Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Urinary infection, Bacteremia, Endocarditis Host Nonmotile Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis DS5, ATCC 14508 DS5, ATCC 14508 Enterococcus faecalis DS5 NCDO 2131, ATCC 14508 Gi03804 Genome incomplete Public Broad Institute Medical 565643 32925 004598_GCAT 0 NZ_ACAI00000000 Draft 32.45x 3128 0 37 454 USA resistant to erythromycin and tetracycline Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Urinary infection, Bacteremia, Endocarditis Host Nonmotile Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis Merz96 Merz96 Enterococcus faecalis Merz96 Gi03805 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 565645 32933 004599_GCAT 0 NZ_ACAM00000000 Draft 21.49x 106 3037 0 37 454 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Urinary infection, Bacteremia, Endocarditis Host Nonmotile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium animalis BACTERIAL Bifidobacterium animalis lactis DSM 10140 DSM 10140 Bifidobacterium animalis subsp. lactis DSM 10140 JCM 10602, DSM 10140, CIP 105265 No Gc00987 Gi03806 Genome Complete and Published Public Danisco, Penn State Univ Balat 2009-04-17 J. Bacteriology 191, 4144-51 Food industry, Biotechnological 555970 32893 004600_GCAT 0 NC_012815 Complete Level 6: Finished 1938 1629 1 0 60 USA Yoghurt; Switzerland Switzerland Yoghurt; Switzerland Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host, Intestinal microflora Nonmotile Non-Pathogen, Probiotic Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae O395 O395 O1 Vibrio cholerae O395 Gc00985 Gi03807 Genome Complete and Published Public Nakai Univ VC395 2009-04-20 PLoS ONE 3 (12), E4053 Medical, Human Pathogen 345073 32853 004601_GCAT 0 NC_012582, NC_012583 Complete Level 6: Finished 4135 4100 2 0 47 China 6th pandemic isolate 1965 Homo sapiens Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Cholera, Food poisoning Host, Fresh water Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae M66-2 M66-2 O1 Vibrio cholerae M66-2 Gc00986 Gi03808 Genome Complete and Published Public Nakai Univ VCM66 2009-04-20 PLoS ONE 3 (12), E4053 Medical, Human Pathogen 579112 32851 004602_GCAT 643692053 NC_012580, NC_012578 Complete Level 6: Finished 3938 3839 2 0 47 China 1937 Cholera outbreak in the Makassar area of Indonesia pre-7th pandemic isolate 1937 Indonesia 1937 Cholera outbreak in the Makassar area of Indonesia -5.14549 119.4016 Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Cholera, Food poisoning Host, Fresh water Motile Heterotroph Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus CF-Marseille CF-Marseille Staphylococcus aureus subsp. aureus str. CF-Marseille Gi03809 Genome complete Public Geneva Univ Medical, Human Pathogen 505321 28687 004603_GCAT 0 Draft Newbler 131 2830 0 0 454 Switzerland sputum of a 14-year old female cystic fibrosis patient in France:Bouche du Rhone prototype of GS-MRSA January 2006 France:Bouche du Rhone Homo sapiens Female cystic fibrosis patient Airways Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 30 - 37 Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis BACTERIAL Gardnerella vaginalis JCVIHMP020 JCVIHMP020 Gardnerella vaginalis JCVIHMP020 Unknown Gi03810 Genome incomplete Public J. Craig Venter Institute JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 553189 31393 004604_GCAT 425 0 In progress 0 0 0 USA Blaser Homo sapiens Skin Obligate anaerobe Rod-shaped Mesophile gram+ Free living Bacterial vaginosis Host, Vagina microflora Fastidious Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Pectobacterium Pectobacterium wasabiae BACTERIAL Pectobacterium wasabiae WPP163 WPP163 Pectobacterium wasabiae WPP163 Gi03812 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Plant Pathogen, Agricultural 561231 31293 004606_GCAT 0 NZ_ACUM00000000 Draft 79 5006 4633 50 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Soft rot Host Motile Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella stercorea Unknown Gi03813 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 363265 004607_GCAT 673 0 0 0 0 USA Homo sapiens Gastrointestinal tract Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Oral infection, Periodontal infection Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella tannerae BACTERIAL Prevotella tannerae ATCC 51259 ATCC 51259 Prevotella tannerae ATCC 51259 VPI N14B-15, ATCC 51259 Yes Gi03814 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 626522 33153 004608_GCAT 674 0 ACIJ00000000, NZ_ACIJ00000000 Draft 30.2x 117 2502 0 46 454 USA gingival crevice of adult with gingivitis ATCC 51259 Homo sapiens Adult Patient with gingivitis Oral Gingival crevices Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Oral infection, Periodontal infection Host, Human oral microflora Nonmotile Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Rhodobacter Rhodobacter sphaeroides BACTERIAL Rhodobacter sphaeroides 2.4.1 2.4.1 Rhodobacter sphaeroides 2.4.1 NCIB 8253, ATCC 14690, ATCC 11167, ATCC 17023, NCIB 8287 Yes Gi03815 Genome incomplete Public BCM-HGSC NIH-NIGMS BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 272943 34639 004609_GCAT 722 0 In progress 0 0 0 USA ATCC Homo sapiens Facultative Rod-shaped Mesophile gram- Free living Chains None 25 - 35 Motile Photosynthetic Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Nocardiaceae Rhodococcus Rhodococcus erythropolis BACTERIAL Rhodococcus erythropolis SK121 SK121 Rhodococcus erythropolis SK121 BEI HM-116 Unknown Gi03816 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 596309 34067 004610_GCAT 726 643886201 NZ_ACNO00000000, ACNO00000000 Complete 38x 124 6785 6769 62 454 USA Wounds; skin microflora Blaser Homo sapiens Skin Aerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Filaments Host Nonmotile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Selenomonas Selenomonas noxia BACTERIAL Selenomonas noxia ATCC 43541 ATCC 43541 Selenomonas noxia ATCC 43541 ATCC 43541, VPI D9B-5 Yes Gi03818 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 585503 34641 004612_GCAT 7545 HOMD: tax_130 0 ACKT00000000, NZ_ACKT00000000 Draft Newbler/1.1.03.24_64 28X 195 2039 0 55 454-FLX, Sanger USA Human subgingival region ATCC Homo sapiens Oral Anaerobe Crescent-shaped Mesophile gram+ Free living Host Motile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus caprae BACTERIAL Staphylococcus caprae C87 C87 Unknown Gi03820 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 435838 38749 004614_GCAT 786 0 In progress 0 0 0 USA Human airways sample Michael Surette, U. of Calgary, Canada Homo sapiens Airways Throat swab Upper respiratory tract Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Host, Human skin Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus hominis BACTERIAL Staphylococcus hominis hominis C80 C80 Staphylococcus hominis subsp. hominis C80 Unknown Gi03821 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 435837 38759 004615_GCAT 798 0 In progress 0 0 0 USA Human airways sample Michael Surette, U. of Calgary, Canada Homo sapiens Airways Throat swab Upper respiratory tract Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Singles, Clusters Host, Human skin Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus warneri BACTERIAL Staphylococcus warneri L37603 L37603 Staphylococcus warneri L37603 DSM 20316, ATCC 27836 Yes Gi03822 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 596319 34083 004616_GCAT 808 0 ACPZ00000000, NZ_ACPZ00000000 Complete 46x 77 2425 2446 32 USA Human skin Blaser Homo sapiens Skin Right arm Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Host, Human skin Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus salivarius BACTERIAL Streptococcus salivarius SK126 SK126 Streptococcus salivarius SK126 BEI HM-121 Unknown Gi03823 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 596322 34091 004617_GCAT 845 643886022 ACLO00000000, NZ_ACLO00000000 Complete 102x 101 2128 2034 0 454 USA Blaser Homo sapiens Skin Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs None Host, Oral microflora Nonmotile Non-Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema BACTERIAL Treponema socranskii ATCC 35536 ATCC 35536 VPI DR56BR1116, ATCC 35536 Yes Gi03824 Genome incomplete Public BCM-HGSC NIH Medical, Human Microbiome Project (HMP) 53419 004618_GCAT 860 0 0 0 0 USA subgingival plaque of patient with periodontitis, Virginia USA Homo sapiens patient with periodontitis Oral Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Host Motile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Veillonella Veillonella sp. oral clone HB016 BACTERIAL Veillonella sp. oral clone HB016 F0009 F0009 Veillonella sp. oral clone HB016 Unknown Gi03825 Genome incomplete Public NIH Medical, Human Microbiome Project (HMP) 334576 004619_GCAT 876 0 0 0 0 USA Homo sapiens Oral Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs 37 Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus coleohominis DSM 14060 DSM 14060 CIP 106820, CCUG 44007, DSM 14060 Yes Gi03827 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 181675 004621_GCAT 503 0 0 0 0 USA Human vaginal isolate DSM Human vaginal isolate Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Host, Human vaginal microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces Actinomyces graevenitzii BACTERIAL Actinomyces graevenitzii C83 C83 Unknown Gi03828 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 435830 38761 004622_GCAT 45 0 In progress 0 0 0 454 USA Human airways Michael Surette, U. of Calgary, Canada Homo sapiens Airways Throat swab Upper respiratory tract Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Periodontal infection, Actinomycosis, Gingivitis Host, Human skin Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces Actinomyces odontolyticus BACTERIAL Actinomyces odontolyticus C702 C702 Unknown Gi03829 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Dental Pathogen, Human Gut Microbiome Initiative (HGMI), Medical, Human Pathogen, Human Microbiome Project (HMP) 562972 38741 004623_GCAT 51 0 In progress 0 0 0 Sanger, 454 USA Michael Surette, U. of Calgary, Canada Homo sapiens Airways Throat swab Upper respiratory tract Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Septicemia, Eye infection, Lung infection, Oral abscesses Human intestinal microflora, Host, Human oral microflora Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces Actinomyces viscosus BACTERIAL Actinomyces viscosus C505 C505 Unknown Gi03830 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 562973 38743 004624_GCAT 59 0 In progress 0 0 0 454 USA Michael Surette, U. of Calgary, Canada Homo sapiens Airways Throat swab Upper respiratory tract Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Gingivitis, Periodontal infection, Actinomycosis Host, Human skin Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium pseudodiphtheriticum Unknown Gi03833 Genome incomplete Public NISC NIH Human Microbiome Project (HMP), Medical 37637 004627_GCAT 3035 0 DNA Received 0 0 0 USA Human skin Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Oral infection Host, Human skin 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Gemella Gemella haemolysans BACTERIAL Gemella haemolysans M341 M341 Unknown Gi03835 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 562981 38763 004629_GCAT 428 0 In progress 0 0 0 USA Human airways sample Michael Surette, U. of Calgary, Canada Human airways sample Homo sapiens Airways Throat swab Upper respiratory tract Facultative Coccus-shaped Mesophile gram+ Free living Chains, Pairs Dental plaque, Opportunistic infection Host, Human oral microflora Motile Bacteria Firmicutes Bacilli Bacillales Gemella Gemella morbillorum BACTERIAL Gemella moribillum M424 M424 Unknown Gi03836 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 562982 38781 004630_GCAT 432 0 In progress 0 0 0 USA Human airways sample Michael Surette, U. of Calgary, Canada Human airways sample Homo sapiens Airways Throat swab Upper respiratory tract Facultative Coccus-shaped Mesophile gram+ Free living Pairs, Chains Dental plaque, Opportunistic infection Host, Human oral microflora Motile Bacteria Firmicutes Bacilli Bacillales Gemella Gemella sanguinis BACTERIAL Gemella sanguinis M325 M325 Unknown Gi03837 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 562983 38783 004631_GCAT 433 0 In progress 0 0 0 USA Human airways sample Michael Surette, U. of Calgary, Canada Human airways sample Homo sapiens Airways Throat swab Upper respiratory tract Facultative Coccus-shaped Mesophile gram+ Free living Chains, Pairs Dental plaque, Opportunistic infection Host, Human oral microflora Motile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus BACTERIAL Lactobacillus crispatus MV-1A-US MV-1A-US Unknown Gi03839 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 575596 37951 004633_GCAT 507 148557 0 ACOG00000000, NZ_ACOG00000000 Draft 34.03x GeneMark, Glimmer, Metagene 183 2165 0 36 454 USA Human vaginal isolate Qiang Xu, and Yang Liu Human vaginal isolate Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Chains None Host, Human vaginal microflora Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria flavescens BACTERIAL Neisseria flavescens SK114, JCVIHMP084 SK114, JCVIHMP084 Neisseria flavescens SK114 BEI HM-115 Unknown Gi03841 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 596320 34085 004635_GCAT 600 0 ACQV00000000, NZ_ACQV00000000 Draft 21.82x 31 2204 2417 49 USA Human skin sample Homo sapiens Skin Right arm Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs None Host, Human oral microflora Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria mucosa BACTERIAL Neisseria mucosa M26, ATCC 25996 M26, ATCC 25996 Neisseria mucosa ATCC 25996 ATCC 25996 No Gi03842 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 546266 30477 004636_GCAT 603 643886150 NZ_ACDX00000000, ACDX00000000 Complete Newbler 2.0.00.20 212X 212 2463 2981 51.2 454 USA Human mucosa of pharynx ATCC 25996 Homo sapiens Airways Nasopharynx Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs None Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella oris BACTERIAL Prevotella oris C735 C735 Unknown Gi03843 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 563008 004637_GCAT 665 0 DNA Received 0 0 0 USA Human airways sample Michael Surette, U. of Calgary, Canada Human airways sample Homo sapiens Airways Throat swab Upper respiratory tract Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. C561 BACTERIAL Prevotella sp. C561 C561 Prevotella sp. C561 Unknown Gi03868 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 563031 004662_GCAT 666 0 DNA Received 0 0 0 USA Human airways sample Michael Surette, U. of Calgary, Canada Human airways sample Homo sapiens Airways Throat swab Upper respiratory tract Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host, Human oral microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micrococcaceae Rothia Rothia dentocariosa BACTERIAL Rothia dentocariosa M567 M567 Unknown Gi03845 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 563032 004639_GCAT 734 0 DNA Received 0 0 0 USA Michael Surette, U. of Calgary, Canada Homo sapiens Airways Throat swab Upper respiratory tract Coccus-shaped Mesophile gram+ Free living Periodontitis, Endocarditis, Meningitis, Opportunistic infection Host, Human oral microflora Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micrococcaceae Rothia Rothia mucilaginosa BACTERIAL Rothia mucilaginosa M508 M508 Unknown Gi03846 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 563033 38789 004640_GCAT 737 0 In progress 0 0 0 USA Human airways sample Michael Surette, U. of Calgary, Canada Homo sapiens Airways Throat swab Upper respiratory tract Coccus-shaped Mesophile gram+ Free living Periodontitis, Endocarditis, Meningitis, Opportunistic infection Host, Human oral microflora Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus caprae BACTERIAL Staphylococcus caprae JCVIHMP041 JCVIHMP041 Staphylococcus caprae JCVIHMP041 Unknown Gi03847 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 553211 31419 004641_GCAT 787 0 In progress 0 0 0 USA Human skin sample Blaser Homo sapiens Skin Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Singles, Clusters Host, Human skin Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus hominis BACTERIAL Staphylococcus hominis SK119 SK119 Staphylococcus hominis SK119 BEI HM-119 Unknown Gi03848 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 629742 34087 004642_GCAT 799 643886039 NZ_ACLP00000000, ACLP00000000 Complete 39x 37 2226 2244 31 454 USA Human skin sample Blaser Homo sapiens Skin Left arm Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Singles, Clusters Host, Human skin Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. C150 BACTERIAL Streptococcus sp. C150 C150 Unknown Gi03849 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 435842 38751 004643_GCAT 848 22071 0 In progress 0 0 0 USA Human airways sample Michael Surette, U. of Calgary, Canada Homo sapiens Airways Throat swab Upper respiratory tract Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. C300 BACTERIAL Streptococcus sp. C300 C300 Unknown Gi03850 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 563036 38753 004644_GCAT 849 22071 0 In progress 0 0 0 USA Human airways sample Michael Surette, U. of Calgary, Canada Homo sapiens Airways Throat swab Upper respiratory tract Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. M143 BACTERIAL Streptococcus sp. M143 M143 Unknown Gi03851 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 563037 38755 004645_GCAT 850 22071 0 In progress 0 0 0 USA Human airways sample Michael Surette, U. of Calgary, Canada Homo sapiens Airways Throat swab Upper respiratory tract Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. M334 BACTERIAL Streptococcus sp. M334 M334 Unknown Gi03852 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 563038 38757 004646_GCAT 851 22071 0 In progress 0 0 0 USA Human airways sample Michael Surette, U. of Calgary, Canada Homo sapiens Airways Throat swab Upper respiratory tract Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales BACTERIAL Bacteroidales bacterium C941 C941 Unknown Gi03853 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 562980 38779 004647_GCAT 865 78125 0 In progress 0 0 0 USA Human airways sample Michael Surette, U. of Calgary, Canada Homo sapiens Airways Throat swab Upper respiratory tract Aerobe Rod-shaped Mesophile gram+ Free living Host Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces BACTERIAL Actinomyces naeslundii Unknown Gi03854 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1655 004648_GCAT 48 0 Targeted 0 0 0 USA Human skin Blaser Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Periodontal infection, Actinomycosis, Gingivitis Human skin, Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Carnobacteriaceae Granulicatella Granulicatella adiacens BACTERIAL Granulicatella adiacens ATCC 49175 ATCC 49175 DSM 9848, CIP 103243, ATCC 49175 Yes Gi03858 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 638301 37271 004652_GCAT 444 HOMD: tax_534 0 ACKZ00000000, NZ_ACKZ00000000 Draft Newbler/1.1.03.24 32.2X 62 1923 0 37 454-FLX, Sanger USA Throat flora, urine, and blood of patients with endocarditis ATCC Homo sapiens Patients with endocarditis Oral Mesophile gram+ Free living Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus BACTERIAL Lactobacillus crispatus 125-2-CHN 125-2-CHN Unknown Gi03862 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 575595 38361 004656_GCAT 5045 0 ACPV00000000, NZ_ACPV00000000 Draft 42.60 GeneMark, Glimmer, Metagene 171 2130 0 36 454 USA Human vaginal isolate Qiang Xu, Osel Inc. Human vaginal isolate Homo sapiens Female Urogenital tract Vaginal Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Host, Human vaginal microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus gasseri BACTERIAL Lactobacillus gasseri SV-16A-US SV-16A-US SV-16A-US Unknown Gi03864 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 575604 004658_GCAT 5175 0 DNA Received 0 0 0 USA Human vaginal isolate Qiang Xu, Osel Inc. Human vaginal isolate Homo sapiens Female Urogenital tract Vaginal Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Host, Human vaginal microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus johnsonii BACTERIAL Lactobacillus johnsonii 135-1-CHN 135-1-CHN Unknown Gi03865 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 572503 004659_GCAT 5275 0 DNA Received 0 0 0 USA Human vaginal isolate Qiang Xu, Osel Inc. Human vaginal isolate Homo sapiens Female Urogenital tract Vaginal Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Host, Human vaginal microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus delbrueckii BACTERIAL Lactobacillus delbrueckii lactis DSM 20072 DSM 20072 Lactobacillus delbrueckii subsp. lactis DSM 20072, ATCC 12315, NCDO 1438 Yes Gi03866 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 29397 004660_GCAT 5505 0 0 0 0 USA Emmental cheese DSM Homo sapiens Gastrointestinal tract Microaerophilic Rod-shaped Mesophile gram+ Free living None Host Nonmotile Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Leptotrichia Leptotrichia sp. BACTERIAL Leptotrichia sp. F0260 F0260 BEI HM-10 Unknown Gi03867 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 104608 004661_GCAT 5535 HOMD: tax_847 FJ577250 0 DNA Received 0 0 0 USA Human oral isolate BEI Human oral isolate Homo sapiens Oral Anaerobe Rod-shaped Mesophile gram- Free living Chains, Filaments Human oral microflora, Host, Oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. oral taxon 472 BACTERIAL Prevotella sp. Oral Taxon 472 F0295 F0295 Prevotella sp. oral taxon 472 str. F0295 BEI HM-16 Unknown Gi03869 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 619693 38731 004663_GCAT 6745 HOMD: tax_472 0 In progress 0 0 0 USA BEI Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host, Human oral microflora Nonmotile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Selenomonas Selenomonas flueggei BACTERIAL Selenomonas flueggei ATCC 43531 ATCC 43531 DSM 19720, ATCC 43531 Yes Gi03870 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 638302 37273 004664_GCAT 7543 HOMD: tax_125 0 NZ_ACLA00000000, ACLA00000000 Complete Level 2: High-Quality Draft Newbler/2.0-01162009 27.3X 33 2157 2181 55 Sanger, 454-FLX USA Human oral isolate ATCC Homo sapiens Oral Anaerobe Crescent-shaped Mesophile gram+ Free living Host Motile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus mitis ATCC 6249 ATCC 6249 ATCC 6249 Unknown Gi03871 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 28037 004665_GCAT 8571 HOMD: tax_58 0 0 0 0 USA blood from a patient with septicemia and endocarditis, Washington ATCC USA Homo sapiens Oral Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus sp. CIP 104985 CIP 104985 Unknown Gi03872 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 1306 004666_GCAT 8572 HOMD: tax_66 0 0 0 0 USA CABRI Homo sapiens Oral Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus sanguinis ATCC 29667 ATCC 29667 ATCC 29667 Unknown Gi03873 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 1305 004667_GCAT 8573 HOMD: tax_73 0 0 0 0 USA human throat swab ATCC Homo sapiens Oral Throat swab Upper respiratory tract Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus mitis ATCC 903 ATCC 903 ATCC 903 Unknown Gi03874 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 28037 004668_GCAT 8577 HOMD: tax_411 0 0 0 0 USA ulcerated sore throat ATCC Homo sapiens Airways Throat swab Upper respiratory tract Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus sanguinis ATCC 49296 ATCC 49296 FERM-P 8169, MCLS-2, ATCC 49296 Unknown Gi03875 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 1305 004669_GCAT 8578 HOMD: tax_677 0 0 0 0 USA oral cavity of an infant, Japan ATCC Japan Homo sapiens Infant Oral Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus oralis ATCC 35037 ATCC 35037 NCTC 11427, ATCC 35037 Yes Gi03876 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 1303 38733 004670_GCAT 8579 HOMD: tax_707 0 In progress 0 0 0 USA human mouth ATCC Homo sapiens Oral Mouth Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Host Nonmotile Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Capnocytophaga BACTERIAL Capnocytophaga ochracea F0287 F0287 BEI HM-15 Unknown Gi03877 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 1018 004671_GCAT 1977 HOMD: tax_700 0 0 0 0 Sanger, 454 USA Human oral cavity Izard Human oral cavity Homo sapiens Oral Facultative Rod-shaped Nonsporulating Mesophile 0.42 - 0.6 um 2.5 - 5.7um gram- Free living Periodontal infection, Opportunistic infection Human oral microflora, Host 35 - 37 Motile Opportunistic Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli IAI39 IAI39 Escherichia coli IAI39 Gc00923 Genome Complete and Published Public Genoscope Barbe V vbarbe@genoscope.cns.fr 2008-12-16 Unpublished Medical, Human Pathogen 585057 33411 004672_GCAT 231361 643348547 NC_011750 Complete 5154 4763 1 0 50 France Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Diarrhea Host, Human intestinal microflora Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli IAI1 IAI1 Escherichia coli IAI1 Gc00936 Genome Complete and Published Public Genoscope Barbe V vbarbe@genoscope.cns.fr 2008-12-16 Unpublished Medical, Human Pathogen 585034 33373 004736_GCAT 231361 0 NC_011741 Complete 4700 4353 1 0 50 France Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs Meningitis Human intestinal microflora, Host Motile Pathogen, Highly Virulent Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium BACTERIAL Enterococcus faecium Com12 Com12 Enterococcus faecium Com12 Gi03878 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 565662 32965 004673_GCAT 0 NZ_ACBC00000000 Draft 27.14x 67 2685 0 38 USA Homo sapiens Gastrointestinal tract Intestinal tract Facultative Coccus-shaped Nonsporulating Mesophile Halotolerant gram+ Free living Chains, Pairs Nocosomial infection, Opportunistic infection Host, Soil, Human intestinal microflora Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis HIP11704 HIP11704 Enterococcus faecalis HIP11704 Gi03879 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 565646 32937 004674_GCAT 0 NZ_ACAN00000000 Draft 35.24x 143 3129 0 37 454 USA clinical isolate vancomycin and erythromycin resistant Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Endocarditis, Bacteremia, Urinary infection Host Nonmotile Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis JH1 JH1 Enterococcus faecalis JH1 Gi03880 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 565648 32939 004675_GCAT 0 NZ_ACAP00000000 Draft 30.33x 112 2994 0 37 454 USA clinical strain isolated in the United Kingdom resistant to kanamycin, streptomycin, erythromycin and tetracycline United Kingdom Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Urinary infection, Endocarditis, Bacteremia Host Nonmotile Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis T11 (Okinawa-C1) T11 (Okinawa-C1) Enterococcus faecalis T11 Gi03881 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 565640 32949 004676_GCAT 0 NZ_ACAU00000000 Draft 49 2729 0 37 454 USA urine in Okinawa, Japan Japan Okinawa, Japan 26.212401 127.680932 Homo sapiens Urogenital tract Urine Urinary tract Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Endocarditis, Urinary infection, Bacteremia Host Nonmotile Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis X98, ATCC 27276 X98, ATCC 27276 Enterococcus faecalis X98 ATCC 27276 Gi03882 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 565641 32953 004677_GCAT 0 NZ_ACAW00000000 Draft 33.67x 77 2909 0 37 454 USA infant feces in 1934 1934 infant feces in 1934 Homo sapiens Infant Gastrointestinal tract Feces Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Bacteremia, Endocarditis, Urinary infection Host Nonmotile Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis CH188 CH188 Enterococcus faecalis CH188 Gi03883 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 565644 32951 004678_GCAT 0 NZ_ACAV00000000 Draft 30.92x 120 3158 0 37 USA liver in Boston, MA resistant to gentamycin, kanamycin, streptomycin, tetracycline, erythromycin, and penicillin USA Boston, MA 42.35892 -71.05781 Homo sapiens Liver Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Endocarditis, Urinary infection, Bacteremia Host Nonmotile Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis D6, (73-30318-4) D6, (73-30318-4) Enterococcus faecalis D6 Gi03884 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Swine Pathogen, Medical 565650 32947 004679_GCAT 0 NZ_ACAT00000000 Draft 46 2886 0 37 454, Sanger USA pig in Denmark Denmark Sus scrofa Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Bacteremia, Endocarditis, Urinary infection Host Nonmotile Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis E1Sol E1Sol Enterococcus faecalis E1Sol Gi03885 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 565647 32941 004680_GCAT 0 NZ_ACAQ00000000 Draft 41.58x 75 2853 0 37 454 USA antiobiotic-naive population on the Solomon Islands Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Bacteremia, Endocarditis, Urinary infection Host Nonmotile Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis Fly1 Fly1 Enterococcus faecalis Fly1 Gi03886 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 565649 32945 004681_GCAT 0 NZ_ACAR00000000 Draft 24.23x 105 2790 0 37 USA Drosophila in Oklahoma, U.S. USA Drosophila Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Urinary infection, Bacteremia, Endocarditis Host Nonmotile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Dickeya Dickeya dadantii BACTERIAL Dickeya dadantii Ech703 Ech703 Dickeya dadantii Ech703 Gc01043 Gi03887 Genome Complete and Published Public DOE Joint Genome Institute DOE Perna N ntperna@wisc.edu Dd703 2009-06-26 Unpublished Plant Pathogen, Agricultural 579405 33069 004682_GCAT 0 NC_012880 Complete Level 6: Finished 4679 4137 1 0 55 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs Soft rot Host Motile Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium kluyveri BACTERIAL Clostridium kluyveri NBRC 12016 NBRC 12016 Clostridium kluyveri NBRC 12016 NBRC 12016, DSM 555 Yes Gc00928 Genome Complete and Published Public RITE CKR 2009-01-06 Unpublished Biotechnological 583346 33271 004683_GCAT 643348529 NC_011837 Complete 3896 3489 1 1 31 Japan Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Fresh water, Mud Motile Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium BACTERIAL Enterococcus faecium Com15 Com15 Enterococcus faecium Com15 Gi03888 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 565663 32967 004684_GCAT 0 NZ_ACBD00000000 Draft 27.94x 70 2771 0 38 USA Homo sapiens Gastrointestinal tract Intestinal tract Facultative Coccus-shaped Nonsporulating Mesophile Halotolerant gram+ Free living Chains, Pairs Opportunistic infection, Nocosomial infection Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium BACTERIAL Enterococcus faecium 1,141,733 1,141,733 Enterococcus faecium Gi03889 Genome incomplete Public Broad Institute Medical, Human Pathogen 565659 32959 004685_GCAT 0 NZ_ACAZ00000000 Draft 24.39x 101 2865 0 38 USA Homo sapiens Gastrointestinal tract Intestinal tract Facultative Coccus-shaped Nonsporulating Mesophile Halotolerant gram+ Free living Chains, Pairs Opportunistic infection, Nocosomial infection Wastewater, Soil, Human intestinal microflora, Host Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium BACTERIAL Enterococcus faecium 1,230,933 1,230,933 Enterococcus faecium 1,230,933 Gi03890 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 565656 32943 004686_GCAT 0 NZ_ACAS00000000 Draft 18.44x 304 2951 0 37 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile Halotolerant gram+ Free living Chains, Pairs Nocosomial infection, Opportunistic infection Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium BACTERIAL Enterococcus faecium 1,231,408 1,231,408 Enterococcus faecium 1,231,408 Gi03891 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 565661 32963 004687_GCAT 0 NZ_ACBB00000000 Draft 19.83x 379 2889 0 37 454 USA Facultative Coccus-shaped Nonsporulating Mesophile Halotolerant gram+ Free living Chains, Pairs Nocosomial infection, Opportunistic infection Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium BACTERIAL Enterococcus faecium 1,231,410 1,231,410 Enterococcus faecium 1,231,410 Gi03892 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 565660 32961 004688_GCAT 0 NZ_ACBA00000000 Draft 18.30x 230 2943 0 37 USA Facultative Coccus-shaped Nonsporulating Mesophile Halotolerant gram+ Free living Pairs, Chains Opportunistic infection, Nocosomial infection Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium BACTERIAL Enterococcus faecium 1,231,501 1,231,501 Enterococcus faecium Gi03893 Genome incomplete Public Broad Institute Human Pathogen, Medical 565658 32957 004689_GCAT 0 NZ_ACAY00000000 Draft 31.11x 140 2899 0 37 USA Homo sapiens Gastrointestinal tract Intestinal tract Facultative Coccus-shaped Nonsporulating Mesophile Halotolerant gram+ Free living Chains, Pairs Opportunistic infection, Nocosomial infection Host, Human intestinal microflora, Soil, Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium BACTERIAL Enterococcus faecium 1,231,502 1,231,502 Enterococcus faecium 1,231,502 Gi03894 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 565657 32955 004690_GCAT 0 NZ_ACAX00000000 Draft 27.30x 220 2926 0 37 454 USA Facultative Coccus-shaped Nonsporulating Mesophile Halotolerant gram+ Free living Chains, Pairs Nocosomial infection, Opportunistic infection Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus gallinarum BACTERIAL Enterococcus gallinarum EG1 EG1 Enterococcus gallinarum EG1 Gi03895 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 565652 32921 004691_GCAT 0 NZ_ACAH00000000 Draft 15.74x 79 3415 0 42 454 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile Halotolerant gram+ Free living Pairs, Chains Nocosomial infection, Opportunistic infection Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus gallinarum BACTERIAL Enterococcus gallinarum EG2 EG2 Enterococcus gallinarum EG2 Gi04037 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 565653 32927 004839_GCAT 0 NZ_ACAJ00000000 Draft 24x 49 3134 0 40 454 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile Halotolerant gram+ Free living Chains, Pairs Nocosomial infection, Opportunistic infection Soil, Host, Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Proteobacteria Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas sp. AL212 BACTERIAL Nitrosomonas sp AL212 AL212 Nitrosomonas sp. AL212 Gi03896 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 153948 32989 004692_GCAT 30994 0 NZ_ACPG00000000 Draft 168 3093 3082 44 USA laboratory waste water treatment reactor Aerobe Nonsporulating Mesophile gram- Free living None Soil Motile Nitrifying Lithotroph, Oligotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter BACTERIAL Achromobacter xylosoxidans Unknown Gi03897 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 85698 004693_GCAT 6 231036 0 Targeted 0 0 0 USA Human airways sample Human airways sample Homo sapiens Airways Mesophile gram- Free living Host, Human airways Bacteria Proteobacteria Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter BACTERIAL Achromobacter xylosoxidans Achromobacter xylosoxidans Unknown Gi03898 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 85698 004694_GCAT 7 231036 0 Targeted 0 0 0 USA Human airways sample Human airways sample Homo sapiens Airways Mesophile gram- Free living Host, Human airways Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter BACTERIAL Acinetobacter baumannii Unknown Gi03899 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 470 004695_GCAT 11 0 Targeted 0 0 0 Sanger, 454-FLX USA Burn and chronic wounds Burn and chronic wounds Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Nosocomial infection, Pneumonia Skin microflora, Host, Fresh water, Human skin Nonmotile Pathogen Chemoheterotroph, Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter radioresistens BACTERIAL Acinetobacter radioresistens SK82 SK82 Acinetobacter radioresistens SK82 BEI HM-107 Unknown Gi03900 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 596318 34081 004696_GCAT 19 200859 0 NZ_ACVR00000000, ACVR00000000 Draft 284215 Newbler/1.1.03.24 21x 82 3283 3256 41 454 USA Human skin Blaser Human skin Homo sapiens Skin Right arm Anaerobe Rod-shaped Mesophile gram- Free living Pairs Skin microflora, Host, Human skin Nonmotile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter sp. BACTERIAL Acinetobacter sp. Unknown Gi03901 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 472 004697_GCAT 24 0 Targeted 0 0 0 USA Homo sapiens Airways Anaerobe Rod-shaped Mesophile gram- Free living Host, Human airways Nonmotile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter sp. BACTERIAL Acinetobacter sp. Unknown Gi03902 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 472 004698_GCAT 25 0 Targeted 0 0 0 USA Chronic wounds Homo sapiens Skin Anaerobe Rod-shaped Mesophile gram- Free living Skin microflora, Host, Human skin Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinobaculum BACTERIAL Actinobaculum schaalii Unknown Gi03903 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 59505 004699_GCAT 40 0 Targeted 0 0 0 USA Chronic wounds Chronic wounds Homo sapiens Skin Mesophile gram+ Free living Chains, Pairs, Singles Host, Human skin Bacteria Actinobacteria Actinobacteria (class) BACTERIAL Actinobacterium sp. Unknown Gi03904 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 78537 004700_GCAT 41 0 Targeted 0 0 0 USA Chronic wounds Homo sapiens Skin Mesophile gram+ Free living None Host, Human skin Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces BACTERIAL Actinomyces naeslundii Unknown Gi03905 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1655 004701_GCAT 47 0 Targeted 0 0 0 USA Homo sapiens Airways Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Periodontal infection, Actinomycosis, Gingivitis Host, Human oral microflora Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces Actinomyces odontolyticus BACTERIAL Actinomyces odontolyticus F0309 F0309 BEI HM-94 Unknown Gi03906 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 649742 38309 004702_GCAT 970 0 0 0 0 Sanger, 454 USA Izard, Dewhirst Homo sapiens Airways Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Septicemia, Eye infection, Lung infection, Oral abscesses Human intestinal microflora, Host, Human oral microflora Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. BACTERIAL Actinomyces sp. Unknown Gi03907 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 29317 004703_GCAT 56 0 Targeted 0 0 0 USA Homo sapiens Airways Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Septicemia, Eye infection, Lung infection, Oral abscesses Host, Human airways Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. BACTERIAL Actinomyces sp. Unknown Gi03908 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 29317 004704_GCAT 57 0 Targeted 0 0 0 USA Homo sapiens Airways Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Septicemia, Eye infection, Lung infection, Oral abscesses Host, Human airways Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. BACTERIAL Actinomyces sp. Unknown Gi03909 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 29317 004705_GCAT 60 0 Targeted 0 0 0 USA Homo sapiens Skin Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Host, Human skin Nonmotile Bacteria Proteobacteria Betaproteobacteria Burkholderiales Alcaligenaceae Alcaligenes Alcaligenes sp. BACTERIAL Alcaligenes sp. Unknown Gi03910 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 512 004706_GCAT 65 0 0 0 0 USA Homo sapiens Airways Mesophile gram- Free living Human fecal, Host, Human intestinal microflora Bacteria Proteobacteria Betaproteobacteria Burkholderiales Alcaligenaceae Alcaligenes Alcaligenes sp. BACTERIAL Alcaligenes sp. Unknown Gi03911 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 512 004707_GCAT 66 0 0 0 0 USA Chronic wounds Homo sapiens Chronic wounds Skin Mesophile gram- Free living Human fecal, Host, Human intestinal microflora Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Anaerococcus BACTERIAL Anaerococcus lactolyticus Unknown Gi03912 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 33032 004708_GCAT 73 0 Targeted 0 0 0 Illumina, 454-FLX USA Chronic wounds Homo sapiens Chronic wounds Skin Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs Host, Human skin 37 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Atopobium BACTERIAL Atopobium parvulum Unknown Gi03913 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1382 004709_GCAT 85 0 Targeted 0 0 0 USA Human skin sample with chronic wounds Human skin sample with chronic wounds Homo sapiens Skin Mesophile gram+ Free living Host, Human skin Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus sp. BACTERIAL Bacillus sp. Unknown Gi03914 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1409 004710_GCAT 98 0 Targeted 0 0 0 USA Burn wounds Homo sapiens Burn wounds Skin Microaerophilic Rod-shaped Mesophile gram+ Free living None Host, Human skin Nonmotile Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus BACTERIAL Bacillus thuringiensis Unknown Gi03915 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1428 004711_GCAT 100 0 Targeted 0 0 0 USA Homo sapiens Skin Microaerophilic Rod-shaped Mesophile gram+ Free living None Host, Human skin Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides BACTERIAL Bacteroides fragilis Unknown Gi03916 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 817 004712_GCAT 120 0 Targeted 0 0 0 USA wounds Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Archaea Euryarchaeota ARCHAEAL Aciduliprofundum sp. MAR08 MAR08 Gi03918 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Environmental 379546 004714_GCAT 161417 0 0 0 0 USA Facultative Coccus-shaped Thermophile gram- Free living None Hydrothermal vent, Deep sea, Marine 70 Motile Acidophile Chemolithoautotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Alicycliphilus BACTERIAL Alicycliphilus denitrificans K601T K601T Gi03920 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 179636 004716_GCAT 39244 0 0 0 0 USA Facultative Mesophile gram- Free living None Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia BACTERIAL Burkholderia cepacia ATCC 25416 ATCC 25416 DSM 7288, ATCC 25416 Yes Gi03921 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biocontrol, Agricultural 292 004717_GCAT 0 0 0 0 Sanger USA plant-derived foodstuff (onion, Allium cepa) 1948 Facultative Rod-shaped Nonsporulating Mesophile gram- Free living None Rhizosphere, Host, Rhizosphere-colonizing 30 - 42 Motile Pollutant degrader, Nitrogen fixation Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. CCGE1002 BACTERIAL Burkholderia sp. CCGE1002 CCGE1002 Gi03922 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 640511 37719 004718_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Rhizosphere, Host, Rhizosphere-colonizing Motile Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. CCGE1003 BACTERIAL Burkholderia sp. CCGE1003 CCGE1003 Gi03923 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 640512 37721 004719_GCAT 0 DNA Received 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Rhizosphere, Host, Rhizosphere-colonizing Motile Bacteria Proteobacteria Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter segnis BACTERIAL Caulobacter segnis ATCC 21756 ATCC 21756 DSM 7131, ATCC 21756, LMG 17158, IFO 13240 Yes Gi03924 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bioremediation, Environmental, Biotechnological 509190 37277 004720_GCAT 0 0 0 0 USA Soil Aerobe Rod-shaped Mesophile gram- Free living Singles None Fresh water Motile Chlorophenol degrading Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia BACTERIAL Chlamydia trachomatis G11222 G11222 Gi03925 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Animal Pathogen, Medical, Human Pathogen 813 004721_GCAT 201854 0 0 0 0 USA Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Pneumonia, Bronchitis, Pharyngitis Host Nonmotile Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium BACTERIAL Clostridium acetobutylicum X9 X9 Gi03926 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Acetone production, Ethanol production, Butanol production, Biotechnological 1488 004722_GCAT 0 0 0 0 USA Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Soil Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium BACTERIAL Clostridium ragsdalei P11 P11 Gi03928 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 217158 004724_GCAT 0 DNA Received 0 0 0 USA Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None Soil Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Desulfotomaculum BACTERIAL Desulfotomaculum carboxydivorans Gi03930 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 327817 004726_GCAT 0 Awaiting DNA 0 0 0 Sanger, 454 USA bioreactor treating paper mill wastewater 16166725 Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living None Soil, Mud, Fresh water, Animal intestinal microflora, Sea water 37 Motile Sulfate reducer, Hydrogen sulfide gas release Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Desulfotomaculum BACTERIAL Desulfotomaculum gibsoniae Gi03931 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 102134 004727_GCAT 0 Awaiting DNA 0 0 0 USA 10555363 Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living None Soil, Mud, Fresh water, Animal intestinal microflora, Sea water 37 Motile Sulfate reducer, Hydrogen sulfide gas release Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Desulfotomaculum BACTERIAL Desulfotomaculum kuznetsovii Gi03932 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 58135 004728_GCAT 0 Awaiting DNA 0 0 0 USA Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living None Sea water, Soil, Fresh water, Animal intestinal microflora, Mud 37 Motile Sulfate reducer, Hydrogen sulfide gas release Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Desulfotomaculum BACTERIAL Desulfotomaculum nigrificans Gi03933 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 1565 004729_GCAT 0 Awaiting DNA 0 0 0 USA Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living None Sea water, Soil, Fresh water, Animal intestinal microflora, Mud 37 Motile Sulfate reducer, Hydrogen sulfide gas release Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Desulfotomaculum BACTERIAL Desulfotomaculum ruminis Gi03934 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 1564 004730_GCAT 0 Awaiting DNA 0 0 0 USA Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living None Sea water, Soil, Fresh water, Animal intestinal microflora, Mud 37 Motile Hydrogen sulfide gas release, Sulfate reducer Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Desulfotomaculum BACTERIAL Desulfotomaculum thermobenzoicum Gi03935 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 29376 004731_GCAT 0 Awaiting DNA 0 0 0 USA Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living None Sea water, Soil, Fresh water, Animal intestinal microflora, Mud 37 Motile Sulfate reducer, Hydrogen sulfide gas release Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio aespoeensis BACTERIAL Desulfovibrio aespoeensis Aspo-2 Aspo-2 DSM 10631, ATCC 700646 Yes Gi03936 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 643562 37869 004732_GCAT 0 DNA Received 0 0 0 USA Granitic rock aquifer at 600 m depth; Sweden, Dspv Island Sweden 56.115502 15.537785 600 meters Obligate anaerobe Rod-shaped Sporulating Mesophile gram- Free living None Sea water, Soil, Fresh water, Animal intestinal microflora, Mud 30 Motile Hydrogen sulfide gas release, Sulfate reducer Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae BACTERIAL Desulfovibrio hanfordensis Gi03937 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 872 004733_GCAT 0 DNA Received 0 0 0 USA Obligate anaerobe Rod-shaped Sporulating Mesophile gram- Free living None Sea water, Soil, Fresh water, Animal intestinal microflora, Mud 37 Motile Hydrogen sulfide gas release, Sulfate reducer Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp. FW1012B BACTERIAL Desulfovibrio sp. FW1012B FW1012B Gi03938 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 644968 38043 004734_GCAT 0 In progress 0 0 0 USA Obligate anaerobe Rod-shaped Sporulating Mesophile gram- Free living None Sea water, Soil, Fresh water, Animal intestinal microflora, Mud 37 Motile Sulfate reducer, Hydrogen sulfide gas release Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio vulgaris BACTERIAL Desulfovibrio vulgaris RCH1 RCH1 Gi03939 Genome incomplete Public DOE Joint Genome Institute DOE Hazen T TCHazen@lbl.gov 573059 32603 004735_GCAT 0 NZ_ACQX00000000 Draft Prodigal 85 3696 3367 0 USA Terry C. Hazen (TCHazen@lbl.gov) Obligate anaerobe Rod-shaped Sporulating Mesophile gram- Free living None Sea water, Soil, Fresh water, Animal intestinal microflora, Mud 37 Motile Hydrogen sulfide gas release, Sulfate reducer Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12- MG1655, isolate CB1027 K12- MG1655, isolate CB1027 Gr00007 Gi04152 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Technology development 511145 004954_GCAT 0 Draft 0 0 50.8 Illumina USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora 37 Motile Non-Pathogen Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Flexibacteraceae Flexibacter Flexibacter tractuosus BACTERIAL Flexibacter tractuosus DSM 4126 DSM 4126 NBRC 15989, ATCC 23168, NCMB 1408, IFO 15989, DSM 4126 Yes Gi03940 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 643867 37901 004737_GCAT 58628 0 In progress 0 0 0 USA Sand; Vietnam Vietnam Mesophile gram- Free living None 30 Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Frankiaceae Frankia Frankia sp. EUN1f BACTERIAL Frankia sp EUN1f EUN1f Gi03942 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Agricultural 102897 38795 004739_GCAT 11682 0 In progress 0 0 0 USA Aerobe Filament-shaped Sporulating Mesophile gram+ Symbiotic Mutualistic None Soil, Host, Plant symbiont Nonmotile Non-Pathogen, Nitrogen fixation Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Bacillaceae Geobacillus Geobacillus sp. Y4.1MC1 BACTERIAL Geobacillus sp. Y4.1MC1 Y4.1MC1 Geobacillus sp. Y4.1MC1 Gi03944 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 581103 33183 004741_GCAT 0 Draft 0 0 0 USA Bath Hot Spring in Yellowstone National Park USA Bath Hot Spring in Yellowstone National Park 44.376262 -110.690383 Facultative Rod-shaped Sporulating Thermophile gram+ Free living None Motile Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Bacillaceae BACTERIAL Geobacillus sp. Y4.1MC4 Y4.1MC4 Gi03945 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 129337 004742_GCAT 0 DNA Received 0 0 0 USA Facultative Rod-shaped Sporulating Mesophile gram+ Free living None Motile Chemoorganotroph Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Geobacteraceae Geobacter Geobacter sp. Ply4 BACTERIAL Geobacter sp. Ply4 Ply4 Gi03946 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Bioremediation 443146 004743_GCAT 0 Awaiting DNA 0 0 0 USA Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Sediment Motile Chemolithotroph Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Geobacteraceae Geobacter BACTERIAL Geobacter sulfurreducens Gi03947 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Bioremediation 35554 004744_GCAT 0 DNA Received 0 0 0 USA Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Sediment Motile Chemolithotroph Bacteria Cyanobacteria Oscillatoriales Leptolyngbya Leptolyngbya sp. PCC 7375 BACTERIAL Leptolyngbya sp. ATCC 29409 ATCC 29409 Leptolyngbya sp. PCC 7375 ATCC 29409, PCC 7375 Gi03949 Genome incomplete Public NFMC DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 102129 004746_GCAT 0 Awaiting DNA 0 0 0 USA Plankton, Woods Hole, MA USA Plankton, Woods Hole, MA 41.526357 -70.668322 Filament-shaped Mesophile gram- Free living None Fresh water Bacteria Proteobacteria Betaproteobacteria Methylophilales Methylophilaceae Methylotenera Methylotenera sp. 301 BACTERIAL Methylotenera sp. 301 301 Gi03951 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 666681 39983 004748_GCAT 0 DNA Received 0 0 0 USA gram- Bacteria Proteobacteria Betaproteobacteria Methylophilales Methylophilaceae Methylovorus Methylovorus sp. SIP3-4 BACTERIAL Methylovorus sp. SIP3-4 SIP3-4 Methylovorus sp. SIP3-4 Gc01057 Gi03952 Genome Complete and Published Public DOE Joint Genome Institute DOE Chistoserdova L milachis@u.washington.edu Msip34 2009-07-15 Unpublished 582744 33241 004749_GCAT 0 NC_012969 Complete Level 6: Finished Prodigal 2995 2887 1 2 54 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Fresh water Motile Methylotroph Bacteria Actinobacteria Actinobacteria (class) Rubrobacterales Rubrobacteraceae Rubrobacter Rubrobacter radiotolerans BACTERIAL Rubrobacter radiotolerans DSM 5868 DSM 5868 JCM 2153, ATCC 51242, DSM 46359, DSM 5868 Yes Gi03954 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 643560 37865 004751_GCAT 0 In progress 0 0 0 USA radon-containing hot spring in Japan Japan Aerobe Rod-shaped Nonsporulating Thermophile gram+ Free living None Hot spring 60 Nonmotile Radiation resistant Heterotroph Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Spirochaeta BACTERIAL Spirochaeta thermophila DSM 6578 DSM 6578 DSM 6578, ATCC 700085 Yes Gi03957 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 154 004754_GCAT 0 Awaiting DNA 0 0 0 USA Marine hot spring; USSR, Shiashkoten island Russia Shiashkoten island 48.826533 154.125478 Anaerobe Spiral-shaped Hyperthermophile gram- Free living None Marine, Hot spring 65 Motile Utilize carbohydrates Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Sulfurospirillum BACTERIAL Sulfurospirillum barnesii SES-3 SES-3 Gi03958 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 44674 004755_GCAT 0 Draft GeneMark 2291 2412 39 Sanger, 454 USA 10425777 Microaerophilic Rod-shaped Mesophile gram- Free living None Motile Sulfur respiration Bacteria Firmicutes Clostridia Clostridiales Syntrophomonadaceae Syntrophothermus Syntrophothermus lipocalidus BACTERIAL Syntrophothermus lipocalidus DSM 12680 DSM 12680 DSM 12680 Yes Gi03960 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 643648 37873 004757_GCAT 0 In progress 0 0 0 USA anaerobic granular sludge, thermophilic UASB reactor Anaerobe Rod-shaped Nonsporulating Thermophile gram- Symbiotic Exosymbiotic Syntrophic 55 Syntrophic Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XVII. Incertae Sedis Thermaerobacter Thermaerobacter marianensis BACTERIAL Syntrophothermus marianensis DSM 12885 DSM 12885 JCM 10246, DSM 12885 Yes Gi03961 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 644966 38025 004758_GCAT 0 Awaiting DNA 0 0 0 USA Marine mud at 10897 m depth; Mariana Trench, Challenger Deep 10897 meters Hyperthermophile gram+ Free living Mud 75 Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Thermincola BACTERIAL Thermincola carboxydiphila DSM 17129 DSM 17129 DSM 17129 Yes Gi03962 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 278994 004759_GCAT 0 Awaiting DNA 0 0 0 USA Hot spring; Russia, Baikal Lake region Russia Baikal Lake, Russia 53.565785 108.209486 gram+ Bacteria Firmicutes Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter brockii BACTERIAL Thermoanaerobacter brockii Ako-1 DSM 3389 Ako-1 DSM 3389 Thermoanaerobacter brockii subsp. finnii Ako-1 DSM 3389 Yes Gi03963 Genome incomplete Public DOE Joint Genome Institute DOE Hemme CL hemmecl@ou.edu Biotechnological 509193 32585 004760_GCAT 13759 0 NZ_ACQZ00000000 Draft Prodigal 96 2234 2329 46 USA Lake sediment; Africa, Lake Kivu Christpher L. Hemme (hemmecl@ou.edu) Lake Kivu -2.042025 29.407518 Anaerobe Rod-shaped Nonsporulating Thermophile 6.8 gram+ Free living Pairs, Singles None 65 Motile Saccharolytic Bacteria Firmicutes Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter ethanolicus BACTERIAL Thermoanaerobacter ethanolicus CCSD1 CCSD1 Thermoanaerobacter ethanolicus CCSD1 Gi03964 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bioenergy, Biotechnological 589861 33633 004761_GCAT 59097 0 NZ_ACXY00000000 Draft 90 2204 2423 34 454, Sanger USA Anaerobe Rod-shaped Sporulating Thermophile gram+ Free living None Fresh water Motile Bacteria Firmicutes Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter ethanolicus BACTERIAL Thermoanaerobacter ethanolicus JW 200 JW 200 Gi03965 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 509192 004762_GCAT 59097 0 DNA Received 0 0 0 Sanger, 454 USA Anaerobe Rod-shaped Sporulating Thermophile gram+ Free living None Fresh water Motile Bacteria Firmicutes Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter BACTERIAL Thermoanaerobacter siderophilus L-64 L-64 Gi03966 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 106578 004763_GCAT 59097 0 DNA Received 0 0 0 Sanger, 454 USA Anaerobe Rod-shaped Sporulating Thermophile gram+ Free living None Fresh water Motile Bacteria Firmicutes Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter BACTERIAL Thermoanaerobacter wiegelii Rt8.B1 Rt8.B1 Gi03967 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 46354 004764_GCAT 59097 0 DNA Received 0 0 0 454, Sanger USA Anaerobe Rod-shaped Sporulating Thermophile gram+ Free living None Fresh water Motile Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella sp. 02611 BACTERIAL Brucella sp. 02611 02611 Brucella sp. 02611 Gi03968 Genome incomplete Public AgResearch Biothreat, Medical, Mammal Pathogen, Human Pathogen 404930 33669 004765_GCAT 0 0 0 0 New Zealand New Zealand patient New Zealand Homo sapiens Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Brucellosis Host 37 Nonmotile Pathogen, Intracellular pathogen Bacteria Fibrobacteres Fibrobacteres (class) Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter succinogenes BACTERIAL Fibrobacter succinogenes S85 S85 Fibrobacter succinogenes subsp. succinogenes S85 ATCC 19169 Yes Gi03969 Genome incomplete Public DOE Joint Genome Institute DOE Mead D dmead@lucigen.com Biotechnological 59374 32617 004766_GCAT 3576 0 NZ_ACRA00000000 Draft 30 2823 3192 0 USA Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Host 37 Nonmotile Cellulose degrader Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Flexibacteraceae Adhaeribacter BACTERIAL Adhaeribacter aquaticus MBRG1.5, DSM 16391 MBRG1.5, DSM 16391 NCIMB 14008, DSM 16391 Yes Gi03970 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 299567 004767_GCAT 0 Awaiting DNA 0 0 40 Illumina, 454-Titanium USA Freshwater biofilm; United Kingdom freshwater biofilm developed on a stainless steel surface under a fluid velocity of 0.26 m s(-1) United Kingdom 15774669 Obligate aerobe Rod-shaped Mesophile 0.9 - 1.7um 2.8 - 4.1um Pink gram- Free living Fresh water Nonmotile Chemoorganotroph Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Aequorivita BACTERIAL Aequorivita antarctica SW49, DSM 14231 SW49, DSM 14231 DSM 14231, ACAM 640 Yes Gi03971 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 153266 004768_GCAT 0 Awaiting DNA 0 0 0 454-Titanium, Illumina USA Seawater; Antarctica 12361255 Obligate aerobe Rod-shaped Psychrotolerant Orange gram- Free living Marine Nonmotile Chemoheterotroph Bacteria Bacteroidetes Bacteroidia Bacteroidales Marinilabiaceae Alkaliflexus BACTERIAL Alkaliflexus imshenetskii Z-7010, DSM 15055 Z-7010, DSM 15055 DSM 15055 Yes Gi03972 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 286730 004769_GCAT 0 Awaiting DNA 0 0 0 Illumina, 454-Titanium USA alkaline lake, Verkhneye Beloye (Central Asia) 15340778 Anaerobe Rod-shaped 7.5 - 10.2 gram- Free living Alkaliphile Chemoheterotroph Bacteria Synergistetes Synergistia Synergistales Synergistaceae Anaerobaculum BACTERIAL Anaerobaculum mobile NGA, DSM 13181 NGA, DSM 13181 JCM 12221, DSM 13181, ATCC BAA-54 Yes Gi03973 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 97477 004770_GCAT 0 0 0 51.5 USA anaerobic wool-scouring wastewater treatment lagoon Uruguay 11837298 anaerobic wool-scouring wastewater treatment lagoon Obligate anaerobe Rod-shaped Nonsporulating Thermophile 6.6 - 7.3 0.5 - 1.0 um 2.0 - 4.um gram- Free living Pairs, Singles None Wastewater 55-60 Motile Chemoorganotroph Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Cyclobacteriaceae Aquiflexum BACTERIAL Aquiflexum balticum BA160, DSM 16537 BA160, DSM 16537 LMG 22565, CIP 108445, DSM 16537 Yes Gi03974 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 280473 004771_GCAT 0 0 0 0 USA Water sample (5 m depth); central Baltic Sea 15545480 Water sample (5 m depth); central Baltic Sea 5 meters Rod-shaped Mesophile Red gram- Free living None Marine 30 Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides BACTERIAL Bacteroides coprosuis PC 139, DSM 18011 PC 139, DSM 18011 NRRL B-41113, CCUG 50528, DSM 18011 Yes Gi03975 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 151276 004772_GCAT 0 In progress 0 0 0 USA Pig faeces, swine manure; USA USA 16280519 Sus scrofa Gastrointestinal tract Feces Rod-shaped Nonsporulating Mesophile gram- Free living None Host Bacteria Proteobacteria Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter vibrioides BACTERIAL Caulobacter crescentus NA1000 NA1000 Caulobacter crescentus NA1000 Gc00939 Genome Complete and Published Public Univ of Chicago Crosson S scrosson@uchicago.edu CCNA 2009-01-16 Unpublished Biogeochemical, Bioremediation, Wastewater treatment, Environmental, Biotechnological 565050 32027 004773_GCAT 123019 137102 643348526 NC_011916 Complete 4042 3969 1 0 67.2 USA variant of wild-type strain CB15 spontaneous mutant derivative of C. crescentus strain CB15 Obligate aerobe Rod-shaped Mesophile gram- Free living Singles None Soil, Marine, Fresh water 35 Motile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae 23F ST81, ATCC 700669 23F ST81, ATCC 700669 Streptococcus pneumoniae ATCC 700669 ATCC 700669 Gc00940 Genome Complete and Published Public Sanger Institute, Univ of Leicester, Univ of Glasgow Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ SPN23F 2009-01-13 J Bacteriology 191, 1480-9 Medical, Human Pathogen 561276 31233 004774_GCAT 88719 643348576 NC_011900 Complete 2221 1990 1 0 40 United Kingdom Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus pneumoniae 021198 021198 Gi03976 Genome incomplete Public Sanger Institute, Univ of Leicester, Univ of Glasgow Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical, Human Pathogen 1313 004775_GCAT 88719 0 29.7x 2200 0 40 454-GS20, 454-FLX United Kingdom Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus pneumoniae 032672 032672 Gi03977 Genome incomplete Public Sanger Institute, Univ of Leicester, Univ of Glasgow Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical, Human Pathogen 1313 004776_GCAT 88719 0 18.8x 2200 0 40 454-GS20, 454-FLX United Kingdom Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus pneumoniae 033038 033038 Gi03978 Genome incomplete Public Sanger Institute, Univ of Leicester, Univ of Glasgow Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Human Pathogen, Medical 1313 004777_GCAT 88719 0 13.4x 2200 0 40 454-GS20, 454-FLX United Kingdom Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus pneumoniae 034156 034156 Gi03979 Genome incomplete Public Sanger Institute, Univ of Leicester, Univ of Glasgow Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Human Pathogen, Medical 1313 004778_GCAT 88719 0 20.0x 2200 0 40 454-GS20, 454-FLX United Kingdom Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Pneumonia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus pneumoniae 034183 034183 Gi03980 Genome incomplete Public Sanger Institute, Univ of Leicester, Univ of Glasgow Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Human Pathogen, Medical 1313 004779_GCAT 88719 0 15.2x 2200 0 40 454-FLX, 454-GS20 United Kingdom Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus pneumoniae 061370 061370 Gi03981 Genome incomplete Public Sanger Institute, Univ of Leicester, Univ of Glasgow Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Human Pathogen, Medical 1313 004780_GCAT 88719 0 12.1x 2200 0 40 454-FLX, 454-GS20 United Kingdom Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus pneumoniae 072838 072838 Gi03982 Genome incomplete Public Sanger Institute, Univ of Leicester, Univ of Glasgow Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Human Pathogen, Medical 1313 004781_GCAT 88719 0 24.7x 2200 0 40 454-GS20, 454-FLX United Kingdom Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus pneumoniae 994038 994038 Gi03983 Genome incomplete Public Sanger Institute, Univ of Leicester, Univ of Glasgow Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Human Pathogen, Medical 1313 004782_GCAT 88719 0 24.2x 2200 0 40 454-GS20, 454-FLX United Kingdom Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Pneumonia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus pneumoniae 994039 994039 Gi03984 Genome incomplete Public Sanger Institute, Univ of Leicester, Univ of Glasgow Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Human Pathogen, Medical 1313 004783_GCAT 88719 0 30.1x 2200 0 40 454-FLX, 454-GS20 United Kingdom Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus pneumoniae A45 A45 Gi03985 Genome incomplete Public Sanger Institute, Univ of Leicester, Univ of Glasgow Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical, Human Pathogen 1313 004784_GCAT 88719 0 11.1x 2200 0 40 454-FLX, 454-GS20 United Kingdom Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus pneumoniae NCTC 7465 NCTC 7465 NCTC 7465 Gi03986 Genome incomplete Public Sanger Institute, Univ of Leicester, Univ of Glasgow Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Human Pathogen, Medical 1313 004785_GCAT 88719 0 8.7x 2200 0 40 454-GS20, 454-FLX United Kingdom Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus pneumoniae P1041 P1041 Gi03987 Genome incomplete Public Sanger Institute, Univ of Leicester, Univ of Glasgow Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical, Human Pathogen 1313 004786_GCAT 88719 0 7.0x 2200 0 40 454-FLX, 454-GS20 United Kingdom Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Pneumonia Host Nonmotile Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium difficile BACTERIAL Clostridium difficile CD196 CD196 Gi03988 Genome incomplete Public Sanger Institute Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Animal Pathogen, Human Pathogen, Medical, Swine Pathogen 645462 38037 004787_GCAT 0 In progress 33509 4000 0 0 United Kingdom single patient with C. difficile infection in a hospital in Paris 1985 France Paris, France 48.856667 2.350987 Homo sapiens Patient with C. difficile infection Gastrointestinal tract Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Peritonitis, Diarrhea, Colitis Host Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium difficile BACTERIAL Clostridium difficile R20291 (SM) R20291 (SM) Gi03989 Genome incomplete Public Sanger Institute Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Swine Pathogen, Medical, Animal Pathogen, Human Pathogen 645463 38039 004788_GCAT 0 In progress 34018 546 4000 0 0 454-GS20 United Kingdom Stoke Mandeville Hospital, UK in 2006 2006 United Kingdom 51.800473 -0.803289 Homo sapiens Gastrointestinal tract Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Peritonitis, Diarrhea, Colitis Host Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium BACTERIAL Clostridium difficile BI1 BI1 Gi03990 Genome incomplete Public Sanger Institute Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Swine Pathogen, Animal Pathogen, Human Pathogen, Medical 1496 004789_GCAT 0 Draft 34428 19 4000 0 0 United Kingdom Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Peritonitis, Diarrhea, Colitis Host Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium BACTERIAL Clostridium difficile M68 M68 Gi03991 Genome incomplete Public Sanger Institute Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Animal Pathogen, Human Pathogen, Medical, Swine Pathogen 1496 004790_GCAT 0 Draft 29958 814 4000 0 0 United Kingdom Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Peritonitis, Diarrhea, Colitis Host Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium BACTERIAL Clostridium difficile CF5 CF5 Gi03992 Genome incomplete Public Sanger Institute Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Animal Pathogen, Human Pathogen, Medical, Swine Pathogen 1496 004791_GCAT 0 Draft 34226 42 4000 0 0 United Kingdom Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Peritonitis, Diarrhea, Colitis Host Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium BACTERIAL Clostridium difficile 2007855 2007855 Gi03993 Genome incomplete Public Sanger Institute Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Swine Pathogen, Animal Pathogen, Human Pathogen, Medical 1496 004792_GCAT 0 Draft 33918 31 4000 0 0 United Kingdom Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Peritonitis, Diarrhea, Colitis Host Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium BACTERIAL Clostridium difficile M120 M120 Gi03994 Genome incomplete Public Sanger Institute Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Human Pathogen, Medical, Animal Pathogen, Swine Pathogen 1496 004793_GCAT 0 Draft 32381 35 4000 0 0 United Kingdom Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Peritonitis, Diarrhea, Colitis Host Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium BACTERIAL Clostridium botulinum 17B 17B Gi03995 Genome incomplete Public Sanger Institute Beowulf Genomics Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Human Pathogen, Biothreat, Medical 1491 004794_GCAT 0 28493 0 0 0 United Kingdom Obligate anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Singles, Pairs Botulism Soil 35 - 40 Motile Pathogen, Type A toxin producer Chemoorganotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella bronchiseptica BACTERIAL Bordetella bronchiseptica 253 (ST27) 253 (ST27) Bordetella bronchiseptica 253 Gi03996 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Animal Pathogen, Medical 568707 004795_GCAT 0 Draft 96961 222 0 0 0 United Kingdom Obligate aerobe Rod-shaped Mesophile gram- Free living Respiratory infection Host 35 - 37 Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella pertussis BACTERIAL Bordetella pertussis 18323 (ST24) 18323 (ST24) Gi03997 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical, Animal Pathogen 568706 004796_GCAT 0 Draft 72504 19 0 0 0 United Kingdom Obligate aerobe Rod-shaped Mesophile gram- Free living Respiratory infection Host 35 - 37 Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella BACTERIAL Bordetella parapertussis Bpp5 (ST16) Bpp5 (ST16) Gi03998 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical, Animal Pathogen 519 004797_GCAT 0 Draft 86515 5 0 0 0 United Kingdom Obligate aerobe Rod-shaped Mesophile gram- Free living Respiratory infection Host 35 - 37 Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella BACTERIAL Bordetella parapertussis MO149 (ST15) MO149 (ST15) Gi03999 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Animal Pathogen, Medical 518 004798_GCAT 0 Draft 85471 4 0 0 0 United Kingdom Obligate aerobe Rod-shaped Mesophile gram- Free living Respiratory infection Host 35 - 37 Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus BACTERIAL Haemophilus influenzae F3031 F3031 Gi04000 Genome incomplete Public Sanger Institute, Univ of Oxford Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical, Human Pathogen 727 004799_GCAT 255295 0 Draft 34682 10 2100 0 0 United Kingdom Brazilian purpuric fever outbreak in the early 1980s Brazil Homo sapiens Facultative Rod-shaped Mesophile gram- Free living Meningitis, Respiratory infection Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus BACTERIAL Haemophilus influenzae F3047 F3047 Gi04001 Genome incomplete Public Sanger Institute, Univ of Oxford Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Medical, Human Pathogen 727 004800_GCAT 255295 0 Draft 31070 7 2100 0 0 United Kingdom Brazilian purpuric fever outbreak in the early 1980s Brazil Homo sapiens Facultative Rod-shaped Mesophile gram- Free living Meningitis, Respiratory infection Host Nonmotile Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides BACTERIAL Bacteroides helcogenes P 36-108, DSM 20613 P 36-108, DSM 20613 ATCC 35417, DSM 20613 Yes Gi04002 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 290053 004801_GCAT 0 In progress 0 0 0 USA Pig faeces Sus scrofa Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides salanitronis BACTERIAL Bacteroides salanitronis BL78, DSM 18170 BL78, DSM 18170 DSM 18170 Yes Gi04003 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 667015 40055 004802_GCAT 0 In progress 0 0 0 USA caecum of chicken 17158987 Chicken Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Balneola BACTERIAL Balneola alkaliphila CM41_14b, DSM 19538 CM41_14b, DSM 19538 DSM 19538, CIP 109603 Yes Gi04004 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 455359 004803_GCAT 0 0 0 39 USA surface waters in the in the bay of Banyuls-sur-Mer; France France 18523166 2.482574 3.131104 Anaerobe Rod-shaped Mesophile 0.7um 2.6um Orange gram- Free living None Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Barnesiella BACTERIAL Barnesiella viscericola C46, DSM 18177 C46, DSM 18177 JCM 13660, DSM 18177 Yes Gi04005 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 397865 004804_GCAT 0 0 0 52 USA Chicken caecum 17267976 Chicken Obligate anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host Nonmotile Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Cyclobacteriaceae Belliella BACTERIAL Belliella baltica BA134, DSM 15883 BA134, DSM 15883 DSM 15883, CIP 108006, LMG 21964 Yes Gi04006 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 232259 004805_GCAT 0 In progress 0 0 0 USA surface water of the central Baltic Sea 14742460 5 meters Rod-shaped Mesophile Pink gram- Free living None Host 25 Bacteria Deferribacteres Deferribacteres (class) Deferribacterales Deferribacteraceae Calditerrivibrio BACTERIAL Calditerrivibrio nitroreducens Yu37-1, DSM 19672 Yu37-1, DSM 19672 NBRC 101217, DSM 19672 Yes Gi04007 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 477976 004806_GCAT 0 0 0 35.1 USA Terrestrial hot spring; Japan, Nagano, Yumata 18599715 Nagano, Japan 36.829513 138.217163 Anaerobe Vibrio-shaped Nonsporulating Thermophile 7.0 - 7.5 1.4 - 2.0um gram- Free living None Host 55 Motile Nitrate reducer Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Capnocytophaga BACTERIAL Capnocytophaga cynodegmi E6447, DSM 19736 E6447, DSM 19736 CIP 103937, DSM 19736, CCUG 24742, ATCC 49044, NCTC 12243 Yes Gi04008 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 28189 004807_GCAT 0 0 0 35.1 USA Mouth of a dog; USA, Virginia USA 2915017 Microaerophilic gram- Free living None Host Nitrate reducer Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Cellulophaga BACTERIAL Cellulophaga algicola IC166, DSM 14237 IC166, DSM 14237 ACAM 630, DSM 14237 Yes Gi04009 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 59600 004808_GCAT 0 In progress 0 0 0 Illumina, 454-Titanium USA surfaces of algal species from the Antarctic marine coast and sea ice 11034497 Aerobe Rod-shaped Mesophile 7.5 Yellow gram- Free living Motile Chemoheterotroph Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Cellulophaga BACTERIAL Cellulophaga lytica Cy l20, DSM 07489 Cy l20, DSM 07489 IAM 14306, DSM 07489, ATCC 23178 Yes Gi04010 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 979 004809_GCAT 0 In progress 0 0 0 454-Titanium, Illumina USA Beach mud; Costa Rica Costa Rica 10425785 Aerobe Rod-shaped Mesophile 7.5 Yellow gram- Free living Mud Motile Chemoheterotroph Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus Mu50-omega Mu50-omega Staphylococcus aureus subsp. aureus Mu50-omega Gi04011 Genome incomplete Public Juntendo Univ Medical, Human Pathogen 585891 33445 004810_GCAT 0 NZ_BABM00000000 Draft 1 2878 0 32 Japan Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host Nonmotile Pathogen Bacteria Synergistetes Synergistia Synergistales Synergistaceae Cloacibacillus BACTERIAL Cloacibacillus evryensis 158, DSM 19522 158, DSM 19522 DSM 19522, JCM 14828 Yes Gi04012 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 508460 004811_GCAT 0 In progress 0 0 55.8 454-Titanium, Illumina USA Sewage sludge; France, wastewater treatment plant, Evry France Evry, France 48.624712 2.430844 Obligate anaerobe Rod-shaped Mesophile 7 0.8 - 1.0 um 2 - 3 um gram- Free living Wastewater, Sludge 37 Nonmotile Chemoheterotroph Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Cyclobacteriaceae Cyclobacterium BACTERIAL Cyclobacterium marinum DSM 745 DSM 745 ATCC 25205, DSM 745 Yes Gi04013 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 104 004812_GCAT 0 Awaiting DNA 0 0 0 454-Titanium, Illumina USA Coelomic fluid of a sand dollar Mesophile gram- Free living Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Flexibacteraceae Cytophaga BACTERIAL Cytophaga fermentans IAM 14302, DSM 9555 IAM 14302, DSM 9555 IAM 14302, ATCC 19072, DSM 9555, NCIMB 2218 Yes Gi04014 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 982 004813_GCAT 0 Awaiting DNA 0 0 0 Illumina, 454-Titanium USA Marine mud Mesophile gram- Free living Mud Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobacteraceae Desulfocella BACTERIAL Desulfocella halophila GSL-But2, DSM 11763 GSL-But2, DSM 11763 ATCC 700426, DSM 11763 Yes Gi04015 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 66835 004814_GCAT 0 Awaiting DNA 0 0 0 454-Titanium, Illumina USA Surface sediment; USA, Great Salt Lake USA Anaerobe Mesophile gram- Free living Sediment Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Cyclobacteriaceae BACTERIAL Echinicola vietnamensis KMM 6221, DSM 17526 KMM 6221, DSM 17526 CIP 109902, LMG 23754, DSM 17526 Yes Gi04016 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 390884 004815_GCAT 0 Awaiting DNA 0 0 45.9 Illumina, 454-Titanium USA Seawater collected in a musselfarm; Vietnam, South China Sea, Nha Trang Bay China 17392202 12.230558 109.201183 Mesophile Halotolerant Pink gram- Free living Marine Motile Heterotroph Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Flexibacteraceae Emticicia BACTERIAL Emticicia oligotrophica GPTSA100-15, DSM 17448 GPTSA100-15, DSM 17448 DSM 17448, CIP 109782, MTCC 6937 Yes Gi04017 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 312279 004816_GCAT 0 Awaiting DNA 0 0 36.9 454-Titanium, Illumina USA Warm spring water; India, Assam, Jorhat India 16627643 Jorhat, India 26.75602 94.20945 Aerobe Rod-shaped Mesophile gram- Free living Fresh water Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Sphingobacteriaceae BACTERIAL Flexibacter canadensis USAM 9D, DSM 3403 USAM 9D, DSM 3403 ATCC 29591, DSM 3403 Yes Gi04018 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 995 004817_GCAT 0 Awaiting DNA 0 0 0 Illumina, 454-Titanium USA Cook. Soil; Canada Canada Mesophile gram- Free living Soil Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Flexibacteraceae Flexibacter BACTERIAL Flexibacter flexilis Fx f1, DSM 6793 Fx f1, DSM 6793 ATCC 23079, DSM 6793 Yes Gi04019 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 998 004818_GCAT 0 Awaiting DNA 0 0 0 454-Titanium, Illumina USA Water, pond; Costa Rica Costa Rica Mesophile gram- Free living Fresh water Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Flexibacteraceae Flexibacter BACTERIAL Flexibacter litoralis Fx l1, DSM 6794 Fx l1, DSM 6794 IFO 15988, DSM 6794, NBRC 15988, ATCC 23117 Yes Gi04020 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 999 004819_GCAT 0 Awaiting DNA 0 0 0 Illumina, 454-Titanium USA Sea-water aquarium; USA, La Jolla USA Mesophile gram- Free living Marine Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Flexibacteraceae Flexibacter BACTERIAL Flexibacter litoralis GEY, DSM 9560 GEY, DSM 9560 ATCC 23103, DSM 9560 Yes Gi04021 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 1003 004820_GCAT 0 Awaiting DNA 0 0 0 Illumina, 454-Titanium USA Hot spring; Iceland, Geysir Iceland Geysir, Iceland 64.27951 -20.36138 Mesophile gram- Free living Hot spring, Fresh water Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella sp. 83/13 BACTERIAL Brucella sp. 83/13 83/13 Gi04022 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biothreat, Medical, Mammal Pathogen, Human Pathogen 520449 33045 004821_GCAT 0 NZ_ACBQ00000000 Draft 28.53x 3113 0 57.2 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Brucellosis Host 37 Nonmotile Pathogen, Intracellular pathogen Eukaryota Streptophyta Liliopsida Poales Poaceae Panicum EUKARYAL Panicum virgatum U518 U518 Switchgrass Ge00312 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 38727 004822_GCAT 0 0 0 0 USA Eukaryota Streptophyta Liliopsida Poales Poaceae Panicum EUKARYAL Panicum virgatum U601 U601 Switchgrass Ge00313 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 38727 004823_GCAT 0 0 0 0 USA Eukaryota Streptophyta Liliopsida Poales Poaceae Panicum EUKARYAL Panicum virgatum K101 K101 Switchgrass Ge00314 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 38727 004824_GCAT 0 0 0 0 USA Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus BACTERIAL Vibrio parahaemolyticus AN-5034 AN-5034 Vibrio parahaemolyticus AN-5034 Gi04023 Genome incomplete Public J. Craig Venter Institute Medical, Human Pathogen 563773 33625 004825_GCAT 0 NZ_ACFO00000000 Draft 8.3x 54 5199 0 45 USA Bangladesh in 1998 1998 Bangladesh Homo sapiens Patien Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Food poisoning, Gastroenteritis Fresh water Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus BACTERIAL Vibrio parahaemolyticus AQ4037 AQ4037 Vibrio parahaemolyticus AQ4037 Gi04024 Genome incomplete Public J. Craig Venter Institute Medical, Human Pathogen 563772 33623 004826_GCAT 0 NZ_ACFN00000000 Draft 7.3x 4900 0 45.4 USA Southeast Asian pandemic strain isolated from the Maldives in 1985 1985 Maldives Homo sapiens Patient Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Food poisoning, Gastroenteritis Fresh water Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus BACTERIAL Vibrio parahaemolyticus Peru-466 Peru-466 Vibrio parahaemolyticus Peru-466 Gi04025 Genome incomplete Public J. Craig Venter Institute Medical, Human Pathogen 563771 33621 004827_GCAT 0 NZ_ACFM00000000 Draft 8.6x 5000 0 45.4 USA Homo sapiens Patien Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Food poisoning, Gastroenteritis Fresh water Motile Heterotroph Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus BACTERIAL Bacillus licheniformis 9945A 9945A Gi04027 Genome incomplete Public Goettingen Genomics Laboratory Liesegang H hlieseg@gwdg.de Biotechnological 1402 004829_GCAT 0 0 0 0 Germany Facultative Rod-shaped Sporulating Mesophile gram+ Free living None Soil Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces sp. C BACTERIAL Streptomyces sp. C C Streptomyces sp. C Gi04028 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Biotechnological 253839 33601 004830_GCAT 0 NZ_ACEW00000000 Draft 8.17x 652 7916 0 72 USA Aerobe Filament-shaped Sporulating Mesophile gram+ Free living None Soil Nonmotile Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella melitensis BACTERIAL Brucella melitensis bv 2, 63/9 bv 2, 63/9 2 Brucella melitensis bv. 2 str. 63/9 BCCN R2, ATCC 23457 Gi04029 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biothreat, Medical, Mammal Pathogen, Human Pathogen 520465 33577 004831_GCAT 0 NZ_ACEM00000000 Draft 16.24x 60 3284 0 57 454 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Brucellosis Host 37 Nonmotile Pathogen, Intracellular pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella melitensis BACTERIAL Brucella melitensis bv 3, Ether bv 3, Ether 3 Brucella melitensis bv. 3 str. Ether BCCN R3, ATCC 23458 Gi04030 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biothreat, Medical, Mammal Pathogen, Human Pathogen 520466 33569 004832_GCAT 0 NZ_ACEI00000000 Draft 40.67x 105 3279 0 57 454 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Brucellosis Host 37 Nonmotile Intracellular pathogen, Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella melitensis BACTERIAL Brucella melitensis bv 1, Rev.1 bv 1, Rev.1 1 Brucella melitensis bv. 1 str. Rev.1 BCCN V4a Gi04031 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biothreat, Medical, Mammal Pathogen, Human Pathogen 520464 33565 004833_GCAT 0 NZ_ACEG00000000 Draft 32.14x 93 3270 0 57.3 454 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Chains, Pairs, Singles Brucellosis Host 37 Nonmotile Pathogen, Intracellular pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella ceti BACTERIAL Brucella ceti B1/94 B1/94 Brucella ceti B1/94 Gi04032 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biothreat, Medical, Mammal Pathogen, Human Pathogen 520457 33573 004834_GCAT 0 NZ_ACEK00000000 Draft 35.16x 102 3276 0 57 454 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Brucellosis Host 37 Nonmotile Pathogen, Intracellular pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella ceti BACTERIAL Brucella ceti M490/95/1 M490/95/1 Brucella ceti M490/95/1 Gi04033 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biothreat, Medical, Mammal Pathogen, Human Pathogen 520458 33571 004835_GCAT 0 NZ_ACEJ00000000 Draft 38.16x 142 3274 0 57 454 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Brucellosis Host 37 Nonmotile Intracellular pathogen, Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella neotomae BACTERIAL Brucella neotomae 5K33, ATCC 23459 5K33, ATCC 23459 Brucella neotomae 5K33 ATCC 23459, BCCN R16 Gi04034 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biothreat, Medical, Mammal Pathogen, Human Pathogen 520456 33567 004836_GCAT 0 NZ_ACEH00000000 Draft 36.42x 68 3299 0 57 USA desert wood rat Neotoma lepida Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Chains, Pairs, Singles Brucellosis Host 37 Nonmotile Pathogen, Intracellular pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella pinnipedialis BACTERIAL Brucella pinnipedialis M292/94/1 M292/94/1 Brucella pinnipedialis M292/94/1 Gi04035 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biothreat, Medical, Mammal Pathogen, Human Pathogen 520462 33563 004837_GCAT 0 NZ_ACEF00000000 Draft 36.48x 80 3300 0 57 454 USA common seal Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Brucellosis Host 37 Nonmotile Intracellular pathogen, Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum D 1873 1873 Clostridium botulinum D str. 1873 Gi04036 Genome incomplete Public Los Alamos National Laboratory, J. Craig Venter Institute Brettin T brettin@lanl.gov Medical, Human Pathogen 592027 33173 004838_GCAT 0 NZ_ACSJ00000000 Draft 19x 19 2379 2330 27 Sanger, 454 USA Ham isolated from ham and was associated with the only known human outbreak of type D botulism, in Chad in 1958 1958 Chad Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains, Pairs, Singles Botulism Food, Marine 37 Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus casseliflavus BACTERIAL Enterococcus casseliflavus EC10 EC10 Enterococcus casseliflavus EC10 Gi04038 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Human Pathogen, Medical 565654 32931 004840_GCAT 0 NZ_ACAL00000000 Draft 29.90x 54 3423 0 42 454 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile Halotolerant gram+ Free living Chains, Pairs Nocosomial infection, Opportunistic infection Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae BACTERIAL Delftia sp. Cs1-4 Cs1-4 Gi04039 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 80865 004841_GCAT 0 In progress 0 0 0 USA Aerobe Mesophile gram- Free living None Oil fields, Fresh water, Soil, Sludge 30 Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces flavogriseus BACTERIAL Streptomyces flavogriseus ATCC 33331 ATCC 33331 Streptomyces flavogriseus ATCC 33331 ATCC 33331 No Gi04040 Genome incomplete Public DOE Joint Genome Institute DOE Biotechnological, Bioenergy 591167 33771 004842_GCAT 0 0 0 0 USA Soil Aerobe Filament-shaped Sporulating Mesophile gram+ Free living None Soil Nonmotile Cellulose degrader Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Cellulomonadaceae Cellulomonas Cellulomonas fimi BACTERIAL Cellulomonas flavigena ATCC 484 ATCC 484 Cellulomonas fimi ATCC 484 NCIB 8980, DSM 20113, NCTC 7547, ATCC 484 Yes Gi04041 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bioenergy, Energy production, Biotechnological, Biofuels 590998 33691 004843_GCAT 0 0 0 0 454, Sanger USA Soil Facultative Rod-shaped Nonsporulating Mesophile gram- Free living None Soil Motile Cellulose degrader, Nitrate reducer, Xylan degrader, Biomass degrader Chemoorganotroph Archaea Euryarchaeota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus gammatolerans ARCHAEAL Thermococcus gammatolerans EJ3 EJ3 Thermococcus gammatolerans EJ3 JCM 11827, DSM 15229 Yes Gc01034 Gi04042 Genome Complete and Published Public Univ Paris-SUD, Genoscope CNRS-GEOMEX Zivanovic Y yvan.zivanovic@igmors.u-psud.fr TGAM 2009-06-12 Genome Biology 10, R70 Biotechnological 593117 33671 004844_GCAT 0 CP001398 Complete Level 6: Finished 2045 0 0 France hydrothermal vent chimneys located in the mid-Atlantic Ridge and Guyamas basin. oil wells of the Samotlor oil reservoir Anaerobe Coccus-shaped Nonsporulating Hyperthermophile 5.8 - 9.0 gram- Free living None Hot spring 78 Motile Organotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Shigella Shigella flexneri BACTERIAL Shigella flexneri 200217 200217 Shigella flexneri 200217 Gi04043 Genome incomplete Public Nakai Univ Biothreat, Medical, Human Pathogen 591020 33639 004845_GCAT 0 0 0 0 China China Homo sapiens Patient Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Shigellosis, Dysenteria, Food poisoning Host 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Dickeya Dickeya dadantii BACTERIAL Dickeya dadantii Ech586 Ech586 Dickeya dadantii Ech586 Gi04044 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Plant Pathogen, Agricultural 590409 33667 004846_GCAT 0 NZ_ACYK00000000 Draft 45 4771 4273 53 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Soft rot Motile Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae BX 330286 BX 330286 Vibrio cholerae M66-2 Gi04045 Genome incomplete Public Los Alamos National Laboratory Medical, Human Pathogen 593587 33559 004847_GCAT 0 NZ_ACIA00000000 Draft 6x 8 4000 3758 47 USA 1986 from water Rita Colwell (rcolwell@umiacs.umd.edu) 1986 Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Cholera, Food poisoning Host, Fresh water Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae MJ-1236 MJ-1236 Vibrio cholerae MJ-1236 Gc00994 Gi04046 Genome Complete and Published Public Los Alamos National Laboratory Brettin T brettin@lanl.gov 2009-05-04 Unpublished Medical, Human Pathogen 593588 33555 004848_GCAT 643692054 NC_012668, NC_012667 Complete Level 6: Finished 8x 4236 3912 2 47 USA Matlab, Bangladesh, 1994 Rita Colwell (rcolwell@umiacs.umd.edu) 1984 Bangladesh Matlab, Bangladesh 23.34593 90.71093 Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Cholera, Food poisoning Host, Fresh water Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae RC9 RC9 Vibrio cholerae RC9 Gi04047 Genome incomplete Public Los Alamos National Laboratory Brettin T brettin@lanl.gov Medical, Human Pathogen 593589 33553 004849_GCAT 0 0 0 0 USA Kenya in 1985 1985 Kenya Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Cholera, Food poisoning Host, Fresh water Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae TMA 21 TMA 21 Vibrio cholerae TMA 21 Gi04048 Genome incomplete Public Los Alamos National Laboratory Brettin T brettin@lanl.gov Medical, Human Pathogen 593590 33551 004850_GCAT 0 NZ_ACHY00000000 Draft 11x 20 4023 3728 47 USA Seawater from Brazil non-toxigenic, non-O1/non-O139 strain 1982 Brazil Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Cholera, Food poisoning Host, Fresh water Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae bv albensis VL426 bv albensis VL426 albensis Vibrio cholerae bv. albensis VL426 Gi04049 Genome incomplete Public Los Alamos National Laboratory Brettin T brettin@lanl.gov Medical, Human Pathogen 593585 33549 004851_GCAT 0 NZ_ACHV00000000 Draft 10.3x 5 3987 3641 47 USA Diseased fish from the Elbe River, Germany Rita Colwell (rcolwell@umiacs.umd.edu) Germany Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Cholera, Food poisoning Host, Fresh water Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae sv Inaba 12129(1) sv Inaba 12129(1) Inaba Vibrio cholerae 12129(1) Gi04050 Genome incomplete Public Los Alamos National Laboratory Brettin T brettin@lanl.gov Medical, Human Pathogen 592313 33561 004852_GCAT 0 NZ_ACFQ00000000 Draft 7x 12 3969 3711 47 USA 1985 from water Rita Colwell (rcolwell@umiacs.umd.edu) 1985 Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Cholera, Food poisoning Host, Fresh water Motile Heterotroph Bacteria Firmicutes Bacilli Lactobacillales Carnobacteriaceae Granulicatella Granulicatella elegans BACTERIAL Granulicatella elegans B1333, ATCC 700633 B1333, ATCC 700633 ATCC 700633, CDC 4067-96 Unknown Gi04051 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 626369 38745 004853_GCAT 446 HOMD: tax_596 0 In progress 0 0 0 USA Human sputum ATCC Homo sapiens Oral Aerobe Mesophile gram+ Free living Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus solfataricus ARCHAEAL Sulfolobus solfataricus 98/2 98/2 Sulfolobus solfataricus 98/2 Gi04052 Genome incomplete Public Washington State Univ DOE Biotechnological 555311 33849 004854_GCAT 0 NZ_ACUK00000000 Draft 21x 506 2680 0 35 454 USA Obligate aerobe Coccus-shaped Nonsporulating Hyperthermophile 2.0 - 4.5 0.8 - 2.0 um gram- Free living Singles None Fresh water 85 Motile Acidophile Lithotroph Bacteria Proteobacteria Gammaproteobacteria Aeromonadales Aeromonadaceae Tolumonas Tolumonas auensis BACTERIAL Tolumonas auensis TA 4, DSM 9187 TA 4, DSM 9187 Tolumonas auensis DSM 9187 DSM 9187 Yes Gc01004 Gi04053 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Tola 2009-05-13 Unpublished Biotechnological 595494 33873 SRS002030 004855_GCAT 643692052 NC_012691 Complete Level 6: Finished 3471 3292 1 0 48 USA sediment of a freshwater lake in Switzerland Switzerland Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs None Fresh water, Sediment 22 Nonmotile Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae TM 11079-80 TM 11079-80 Vibrio cholerae TM 11079-80 Gi04054 Genome incomplete Public Los Alamos National Laboratory Brettin T brettin@lanl.gov Medical, Human Pathogen 593586 33579 004856_GCAT 0 NZ_ACHW00000000 Draft 8.5x 35 4055 3769 47 USA O1 El Tor environmental isolate from Brazil Rita Colwell (rcolwell@umiacs.umd.edu) Brazil Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Cholera, Food poisoning Host, Fresh water Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus minor BACTERIAL Actinobacillus minor 202 202 Actinobacillus minor 202 Gi04055 Genome incomplete Public McGill Univ Medical 591023 32531 004857_GCAT 643886008 NZ_ACFT00000000 Draft 2100 738 39.3 Canada Normal respiratory flora of swine Normal respiratory flora of swine Swine Airways Respiratory tract Facultative Rod-shaped Mesophile gram- Free living Chains, Pairs, Singles Human airways, Host, Respiratory tract Nonmotile Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Ruminococcus Ruminococcus sp. BACTERIAL Ruminococcus sp. SR1/5 SR1/5 Unknown Gi04056 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 41978 39149 004858_GCAT 964 0 In progress 32x 0 0 0 United Kingdom Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living None Host 40 Nonmotile Cellulose degrader Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Ruminococcus BACTERIAL Ruminococcus bromii L2-63 L2-63 No Gi04057 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 40518 39153 004859_GCAT 959 0 Draft 26x 40 2200 0 41 454-Titanium United Kingdom Human feces from Rowett Research Institute, Aberdeen United Kingdom Rowett Research Institute, Aberdeen 57.187679 -2.184277 Homo sapiens Gastrointestinal tract Feces Obligate anaerobe Coccus-shaped Nonsporulating Mesophile 0.7 - 1.1 um gram+ Free living None Host, Human intestinal microflora, Human fecal 40 Nonmotile Cellulose degrader, Ethanol production Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Butyrivibrio BACTERIAL Butyrivibrio fibrisolvens 16/4 16/4 Unknown Gi04058 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Bioenergy, Medical, Human Microbiome Project (HMP) 831 39147 004860_GCAT 923 0 In progress Level 2: High-Quality Draft 63x 0 0 0 United Kingdom Isolated as wheat bran-degrader Homo sapiens Gastrointestinal tract Gut Mesophile gram+ Free living None Host Cellulose degrader Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter BACTERIAL Helicobacter felis Gi04059 Genome incomplete Public NXT-GNT Van Nieuwerburgh F Filip.VanNieuwerburgh@Ugent.be http://www.ugent.be/en/people?ugentid=801001335829 Medical 214 004861_GCAT 0 In progress 0 0 0 Belgium Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Host, Human stomach Motile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Dermabacteraceae Devriesea BACTERIAL Devriesea agamarum Gi04060 Genome incomplete Public NXT-GNT Van Nieuwerburgh F Filip.VanNieuwerburgh@Ugent.be http://www.ugent.be/en/people?ugentid=801001335829 Medical 472569 004862_GCAT 0 In progress 0 0 0 Belgium Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Host, Human stomach Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter BACTERIAL Helicobacter cynogastricus Gi04061 Genome incomplete Public NXT-GNT Van Nieuwerburgh F Filip.VanNieuwerburgh@Ugent.be http://www.ugent.be/en/people?ugentid=801001335829 Medical 329937 004863_GCAT 0 In progress 0 0 0 Belgium Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Host, Human stomach Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter BACTERIAL Helicobacter equorum Gi04062 Genome incomplete Public NXT-GNT Van Nieuwerburgh F Filip.VanNieuwerburgh@Ugent.be http://www.ugent.be/en/people?ugentid=801001335829 Medical 361872 004864_GCAT 0 In progress 0 0 0 Belgium Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Host, Human stomach Motile Pathogen Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Megamonas BACTERIAL Megamonas hypermegale ART12/1 ART12/1 Unknown Gi04063 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 158847 39163 004865_GCAT 949 0 In progress 151000 27x 113 2100 0 31 454-Titanium United Kingdom Homo sapiens Gastrointestinal tract Mesophile gram+ Free living None Host Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Faecalibacterium BACTERIAL Faecalibacterium prausnitzii SL3/3 SL3/3 Unknown Gi04064 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 853 39151 004866_GCAT 945 0 In progress 0 0 0 United Kingdom Homo sapiens Gastrointestinal tract Colon Mesophile gram+ Free living None Host Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Faecalibacterium BACTERIAL Faecalibacterium prausnitzii L2-6 L2-6 Unknown Gi04077 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 853 004879_GCAT 944 0 0 0 0 United Kingdom Homo sapiens Gastrointestinal tract Colon Mesophile gram+ Free living None Host Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis Ja/26s Ja/26s Chlamydia trachomatis Ja/26s Gi04065 Genome incomplete Public CHORI, Univ of Maryland, IGS Animal Pathogen, Medical, Human Pathogen 598588 34517 004867_GCAT 0 0 0 0 USA Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Pneumonia, Bronchitis, Pharyngitis Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis H/18s H/18s Chlamydia trachomatis H/18s Gi04066 Genome incomplete Public CHORI, Univ of Maryland, IGS Animal Pathogen, Medical, Human Pathogen 598587 34515 004868_GCAT 0 0 0 0 USA Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Pneumonia, Bronchitis, Pharyngitis Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis E/5s E/5s Chlamydia trachomatis E/5s Gi04067 Genome incomplete Public CHORI, Univ of Maryland, IGS Animal Pathogen, Medical, Human Pathogen 598586 34513 004869_GCAT 0 0 0 0 USA Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Pneumonia, Bronchitis, Pharyngitis Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis D/2s D/2s Chlamydia trachomatis D/2s Gi04068 Genome incomplete Public CHORI, Univ of Maryland, IGS Animal Pathogen, Medical, Human Pathogen 598585 34511 004870_GCAT 0 0 0 0 USA Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Pneumonia, Bronchitis, Pharyngitis Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis C/308-06 C/308-06 Chlamydia trachomatis C/308-06 Gi04069 Genome incomplete Public CHORI, Univ of Maryland, IGS Animal Pathogen, Medical, Human Pathogen 598584 34509 004871_GCAT 0 0 0 0 USA Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Pneumonia, Bronchitis, Pharyngitis Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis J/UW-36 J/UW-36 Chlamydia trachomatis J/UW-36 Gi04070 Genome incomplete Public CHORI, Univ of Maryland, IGS Animal Pathogen, Medical, Human Pathogen 596781 34507 004872_GCAT 0 0 0 0 USA Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Pneumonia, Bronchitis, Pharyngitis Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis I/UW-12/UR I/UW-12/UR Chlamydia trachomatis I/UW-12/UR Gi04071 Genome incomplete Public CHORI, Univ of Maryland, IGS Animal Pathogen, Medical, Human Pathogen 596780 34505 004873_GCAT 0 0 0 0 USA Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Pneumonia, Bronchitis, Pharyngitis Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis H/UW-4 H/UW-4 Chlamydia trachomatis H/UW-4 Gi04072 Genome incomplete Public CHORI, Univ of Maryland, IGS Animal Pathogen, Medical, Human Pathogen 596779 34503 004874_GCAT 0 0 0 0 USA Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Pneumonia, Bronchitis, Pharyngitis Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis G/UW-57/CX G/UW-57/CX Chlamydia trachomatis G/UW-57/CX Gi04073 Genome incomplete Public CHORI, Univ of Maryland, IGS Animal Pathogen, Medical, Human Pathogen 596778 34501 004875_GCAT 0 0 0 0 USA Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Pneumonia, Bronchitis, Pharyngitis Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis E/Bour E/Bour Chlamydia trachomatis E/Bour Gi04074 Genome incomplete Public CHORI, Univ of Maryland, IGS Animal Pathogen, Medical, Human Pathogen 596777 34499 004876_GCAT 0 0 0 0 USA Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Pneumonia, Pharyngitis, Bronchitis Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis Ba/Apache-2 Ba/Apache-2 Chlamydia trachomatis Ba/Apache-2 Gi04075 Genome incomplete Public CHORI, Univ of Maryland, IGS Animal Pathogen, Medical, Human Pathogen 596776 34497 004877_GCAT 0 0 0 0 USA Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Pneumonia, Pharyngitis, Bronchitis Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis A/SA-1 A/SA-1 Chlamydia trachomatis A/SA-1 Gi04076 Genome incomplete Public CHORI, Univ of Maryland, IGS Animal Pathogen, Medical, Human Pathogen 596776 34495 004878_GCAT 0 0 0 0 USA Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Pneumonia, Pharyngitis, Bronchitis Host Nonmotile Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sp. BACTERIAL Clostridium sp. saccharolyticum-like K10 saccharolyticum-like K10 Unknown Gi04078 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 1506 004880_GCAT 931 0 Draft Level 2: High-Quality Draft 0 0 0 United Kingdom Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains, Pairs, Singles Botulism Food, Marine 37 Motile Pathogen Chemoorganotroph Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides xylanisolvens BACTERIAL Bacteroides xylanisolvens XB1A XB1A Unknown Gi04080 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 657309 39177 004882_GCAT 911 0 Draft Level 2: High-Quality Draft http://www.sanger.ac.uk/pathogens/metahit/ 18x 0 0 0 United Kingdom Human feces 3813526 Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host Bacteria Bacteroidetes Bacteroidia Bacteroidales Rikenellaceae Alistipes BACTERIAL Alistipes shahii WAL 8301, AY974072 WAL 8301, AY974072 WAL 8301 Yes Gi04081 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 328814 004883_GCAT 967 0 Draft Level 2: High-Quality Draft 0 0 0 United Kingdom Homo sapiens Gastrointestinal tract Gut Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human intestinal microflora Nonmotile Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Coprococcus BACTERIAL Coprococcus catus GD/7 GD/7 Unknown Gi04082 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 116085 004884_GCAT 932 0 Draft Level 2: High-Quality Draft 0 0 0 United Kingdom Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Human intestinal microflora, Host 37 Nonmotile Non-Pathogen Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Coprococcus BACTERIAL Coprococcus comes SL7/1 SL7/1 Unknown Gi04083 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 410072 004885_GCAT 933 0 Draft Level 2: High-Quality Draft 0 0 0 United Kingdom Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host, Human intestinal microflora 37 Nonmotile Non-Pathogen Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae BACTERIAL Coprococcus sp. ART55/1 ART55/1 Unknown Gi04084 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 33042 004886_GCAT 934 0 Draft Level 2: High-Quality Draft 17x 0 0 0 United Kingdom Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host, Human intestinal microflora 37 Nonmotile Non-Pathogen Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus sp. 7L76 BACTERIAL Enterococcus sp. 7L76 7L76 Unknown Gi04085 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 657310 39181 004887_GCAT 936 0 In progress Level 2: High-Quality Draft 16x 0 0 0 United Kingdom Human feces Homo sapiens Gastrointestinal tract Feces Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Opportunistic infection, Nocosomial infection Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Proteobacteria Deltaproteobacteria Myxococcales Polyangiaceae Chondromyces BACTERIAL Chondromyces crocatus KYC2823 KYC2823 MGI0008 Gi04087 Genome incomplete Public KRIBB Medical, Biotechnological 52 004889_GCAT 0 0 0 0 454 Korea Kyungyun Cho, Hoseo University Korea 37.242752 131.870364 Obligate aerobe Rod-shaped Nonsporulating gram- Free living None Marine Nonmotile Antimicrobial activities Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Methylobacteriaceae Methylobacterium BACTERIAL Methylobacterium oryzae CBMB20 CBMB20 KACC 11585, DSM 18207, LMG 23582 Yes Gi04088 Genome incomplete Public KRIBB Biotechnological, Agricultural 334852 004890_GCAT 0 0 0 70.6 454-GS20, Sanger Korea Surface-disinfected stem tissue of rice Tong-Min Sa, Chungbuk National University 17267973 Aerobe Filament-shaped Sporulating Mesophile gram+ Free living Filaments Salmonellosis Soil 25 - 35 Nonmotile Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae BACTERIAL Eubacterium cylindroides T2-87 T2-87 Unknown Gi04089 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 39483 004891_GCAT 939 0 Draft Level 2: High-Quality Draft 0 0 0 United Kingdom Homo sapiens Gastrointestinal tract Gut Anaerobe Rod-shaped Mesophile gram+ Free living Chains Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium BACTERIAL Eubacterium hallii SM6/1 SM6/1 Unknown Gi04090 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 39488 004892_GCAT 940 0 Draft Level 2: High-Quality Draft 0 0 0 United Kingdom Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Mesophile gram+ Free living Chains Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium BACTERIAL Eubacterium rectale A1-86, DSM 17629 A1-86, DSM 17629 Eubacterium rectale DSM 17629 NCIMB 14373, DSM 17629 No Gi04091 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 39491 39159 004893_GCAT 941 0 In progress Level 2: High-Quality Draft 12x 0 0 0 United Kingdom Faecal sample, adult female; United Kingdom, Aberdeen United Kingdom Aberdeen, UK 57.147493 -2.095392 Homo sapiens Female Gastrointestinal tract Feces Anaerobe Rod-shaped Mesophile gram+ Free living Chains Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella abortus BACTERIAL Brucella abortus C68 C68 9 Brucella abortus bv. 9 str. C68 ATCC 23455, BCCN R11 Gi04092 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biothreat, Medical, Mammal Pathogen, Human Pathogen 520455 33575 004894_GCAT 0 NZ_ACEL00000000 Draft 40.71x 50 3249 0 57 454 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Chains, Pairs, Singles Spontaneous abortion Host 37 Nonmotile Pathogen, Intracellular pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella microti BACTERIAL Brucella microti CCM 4915 CCM 4915 Brucella microti CCM 4915 BCCN 7-01, CCM 4915 Yes Gc01071 Gi04093 Genome Complete and Published Public CNRS Sudic S stephane.audic@igs.cnrs-mrs.fr 2009-08-18 BMC Genomics 10:352 Biothreat, Medical, Mammal Pathogen, Human Pathogen 568815 32233 004895_GCAT 0 NC_013119, NC_013118 Complete Level 6: Finished 414552 Newbler, Phrep/Phrap/Consed 25x 3337 3291 2 0 57 Sanger, 454-FLX France systemically infected voles in South Moravia, Czech Republic 2000 Czech republic South Moravia, Czech Republic 48.991572 16.767425 Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Chains, Pairs, Singles Brucellosis Host, Soil 37 Nonmotile Pathogen, Intracellular pathogen Bacteria Tenericutes Mollicutes Mollicutes bacterium D7 BACTERIAL Mollicutes bacterium D7 D7 Mollicutes bacterium D7 BEI HM-47 Unknown Gi04094 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 556270 32495 004896_GCAT 867 0 ACDT00000000, NZ_ACDT00000000 Complete 19.67x 260 3490 3453 31.4 454 USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Mesophile gram- Free living Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica sv Enteritidis ATCC 14028 ATCC 14028 Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium ATCC 14028 No Gi04095 Genome incomplete Public Washington Univ WASHU webmaster@genome.wustl.edu Medical, Human Pathogen 90371 33863 004897_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Gastroenteritis, Food poisoning Food, Fresh water, Soil, Host Motile Chemoorganotroph Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas uenonis BACTERIAL Porphyromonas uenonis 60-3 60-3 Porphyromonas uenonis 60-3 BEI HM-130 Unknown Gi04096 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Human Microbiome Project (HMP), Medical 596327 34101 004898_GCAT 900 643886142 ACLR00000000, NZ_ACLR00000000 Complete 52x 250 2242 2029 52 454 USA Homo sapiens Urogenital tract Vaginal Rod-shaped Mesophile gram- Free living Host Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Aurantimonadaceae Aurantimonas BACTERIAL Aurantimonas coralicida KLE1122 KLE1122 Unknown Gi04097 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu http://genome.wustl.edu/info/contact_info.cgi Medical, Human Microbiome Project (HMP) 182270 004899_GCAT 884 0 DNA Received 0 0 0 USA Homo sapiens Mesophile gram- Free living Host, Human intestinal microflora, Human fecal Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium BACTERIAL Eubacterium rectale M104/1 M104/1 Unknown Gi04099 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Human Microbiome Project (HMP), Medical 39491 39161 004901_GCAT 942 0 In progress Level 2: High-Quality Draft 21x 0 0 0 United Kingdom Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Mesophile gram+ Free living Chains Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium BACTERIAL Eubacterium siraeum 70/3 70/3 Unknown Gi04100 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 39492 39157 004902_GCAT 943 0 In progress Level 2: High-Quality Draft 25x 0 0 0 United Kingdom Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Mesophile gram+ Free living Chains Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Roseburia BACTERIAL Roseburia faecis 11SE37 11SE37 Unknown Gi04101 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 301302 004903_GCAT 954 0 Draft Level 2: High-Quality Draft 0 0 0 United Kingdom Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Host, Human intestinal microflora Motile Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Roseburia BACTERIAL Roseburia faecis CC123 CC123 Unknown Gi04102 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 301302 004904_GCAT 955 0 Draft Level 2: High-Quality Draft 0 0 0 United Kingdom Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Host, Human intestinal microflora Motile Cellulose degrader Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Roseburia BACTERIAL Roseburia intestinalis M50/1 M50/1 Unknown Gi04103 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 166486 39165 004905_GCAT 956 0 In progress Level 2: High-Quality Draft 25x 0 0 0 United Kingdom Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Host, Human intestinal microflora Motile Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Roseburia BACTERIAL Roseburia intestinalis XB6B4 XB6B4 Unknown Gi04104 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 166486 004906_GCAT 957 0 Draft Level 2: High-Quality Draft 0 0 0 United Kingdom Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Host, Human intestinal microflora Motile Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Ruminococcus BACTERIAL Ruminococcus bromii L7660, ATCC 27255 L7660, ATCC 27255 ATCC 27255 Yes Gi04105 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 40518 004907_GCAT 960 0 Draft Level 2: High-Quality Draft 0 0 0 United Kingdom Homo sapiens Gastrointestinal tract Feces Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living None Host 40 Nonmotile Cellulose degrader Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Ruminococcus BACTERIAL Ruminococcus obeum A2-162 A2-162 Unknown Gi04106 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 40520 39167 004908_GCAT 962 0 In progress Level 2: High-Quality Draft 0 0 0 United Kingdom Homo sapiens Gastrointestinal tract Feces Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living None Host 40 Nonmotile Cellulose degrader Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Ruminococcus Ruminococcus sp. 18P13 BACTERIAL Ruminococcus sp. 18P13 18P13 Unknown Gi04107 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 213810 39179 004909_GCAT 963 0 In progress Level 2: High-Quality Draft 26x 0 0 0 United Kingdom Homo sapiens Gastrointestinal tract Feces Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living None Host 40 Nonmotile Cellulose degrader Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Ruminococcus BACTERIAL Ruminococcus torques L2-14 L2-14 Unknown Gi04108 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 33039 39169 004910_GCAT 965 0 In progress Level 2: High-Quality Draft 27x 0 0 0 United Kingdom Homo sapiens Gastrointestinal tract Feces Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living None Host 40 Nonmotile Cellulose degrader Bacteria Firmicutes Clostridia Clostridiales butyrate-producing bacterium SM4/1 BACTERIAL Clostridiales sp. SM4/1 SM4/1 butyrate-producing bacterium SM4/1 Unknown Gi04109 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 245012 004911_GCAT 924 0 Draft Level 2: High-Quality Draft 14x 0 0 0 United Kingdom Homo sapiens Gastrointestinal tract Feces Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living None Host 40 Nonmotile Cellulose degrader Bacteria Firmicutes Clostridia Clostridiales butyrate-producing bacterium SS3/4 BACTERIAL Clostridiales sp. SS3/4 SS3/4 butyrate-producing bacterium SS3/4 Unknown Gi04110 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 245014 39155 004912_GCAT 925 0 In progress Level 2: High-Quality Draft 16x 0 0 0 United Kingdom Homo sapiens Gastrointestinal tract Feces Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living None Host 40 Nonmotile Cellulose degrader Bacteria Firmicutes Clostridia Clostridiales butyrate-producing bacterium SSC/2 BACTERIAL Clostridiales sp. SSC/2 SSC/2 butyrate-producing bacterium SS3/4 Unknown Gi04111 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 245018 004913_GCAT 926 0 Draft Level 2: High-Quality Draft 0 0 0 United Kingdom Homo sapiens Gastrointestinal tract Feces Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living None Host 40 Nonmotile Cellulose degrader Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium BACTERIAL Bifidobacterium angulatum JCM7096 JCM7096 DSM 20098, ATCC 27535, JCM7096 Yes Gi04112 Genome incomplete Public Univ of Tokyo Hattori M hattori@k.u-tokyo.ac.jp http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Food industry, Medical, Human Microbiome Project (HMP) 1683 004914_GCAT 912 0 2000 0 0 Sanger Japan Human feces Homo sapiens Adult Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host Nonmotile Commensal Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium BACTERIAL Bifidobacterium dentium JCM1195 JCM1195 DSM 20436, JCM1195, ATCC 27534 Yes Gi04113 Genome incomplete Public Univ of Tokyo Hattori M hattori@k.u-tokyo.ac.jp http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Food industry, Medical, Human Microbiome Project (HMP) 1689 004915_GCAT 916 0 Complete 0 0 0 Sanger Japan Dental caries Homo sapiens Oral Dental plaque Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host Nonmotile Commensal Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum BACTERIAL Bifidobacterium longum infantis 157F-NC 157F-NC Bifidobacterium longum subsp. infantis Unknown Gi04114 Genome incomplete Public Univ of Tokyo Hattori M hattori@k.u-tokyo.ac.jp http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Food industry, Medical, Human Microbiome Project (HMP) 1682 004916_GCAT 917 0 0 0 0 Sanger Japan Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host Nonmotile Commensal Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum BACTERIAL Bifidobacterium longum infantis JCM 1222 JCM 1222 Bifidobacterium longum subsp. infantis JCM 1222 JCM 1222, ATCC 15697, DSM 20088 Yes Gi04115 Genome incomplete Public Univ of Tokyo Hattori M hattori@k.u-tokyo.ac.jp http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Food industry, Medical, Human Microbiome Project (HMP) 565041 004917_GCAT 919 0 0 0 0 Sanger Japan Human feces Homo sapiens Infant Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host Nonmotile Commensal Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum BACTERIAL Bifidobacterium longum infantis JCM 1217 JCM 1217 Bifidobacterium longum subsp. infantis JCM 1217 JCM 1217, DSM 20219, ATCC 15707, CCUG 28903 Yes Gi04116 Genome incomplete Public Univ of Tokyo Hattori M hattori@k.u-tokyo.ac.jp http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Food industry, Medical, Human Microbiome Project (HMP) 565042 004918_GCAT 918 0 0 0 0 Sanger Japan Human feces Homo sapiens Adult Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host Nonmotile Commensal Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium BACTERIAL Bifidobacterium scardovii JCM12489 JCM12489 JCM 12489, CCUG 13008, DSM 13734, ATCC BAA-773 Yes Gi04117 Genome incomplete Public Univ of Tokyo Hattori M hattori@k.u-tokyo.ac.jp http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Medical, Human Microbiome Project (HMP) 158787 004919_GCAT 920 0 0 0 0 Sanger Japan Human blood 12054269 Homo sapiens Blood Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host Nonmotile Commensal Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium sp. BACTERIAL Bifidobacterium sp. HM5 HM5 Unknown Gi04118 Genome incomplete Public Univ of Tokyo Hattori M hattori@k.u-tokyo.ac.jp http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Medical, Human Microbiome Project (HMP) 41200 004920_GCAT 921 0 Draft 0 0 0 Sanger Japan Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host Nonmotile Commensal Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium sp. BACTERIAL Bifidobacterium sp. JCM15439 JCM15439 JCM15439 Unknown Gi04119 Genome incomplete Public Univ of Tokyo Hattori M hattori@k.u-tokyo.ac.jp http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Medical, Human Microbiome Project (HMP) 41200 004921_GCAT 922 0 Complete 0 0 0 Sanger Japan Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host Nonmotile Commensal Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium macginleyi TBS-13 TBS-13 Unknown Gi04120 Genome incomplete Public Univ of Tokyo Hattori M hattori@k.u-tokyo.ac.jp Medical, Human Microbiome Project (HMP) 38290 004922_GCAT 935 0 Draft 0 0 0 Japan Homo sapiens Eye Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Oral infection Host, Oral microflora 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium BACTERIAL Eubacterium nodatum ATCC 3309 ATCC 3309 ATCC 3309 Unknown Gi04121 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Human Microbiome Project (HMP), Medical, Human Pathogen 35518 004923_GCAT 378 0 0 0 0 USA Human oral sample ATCC Homo sapiens Oral Mesophile gram+ Free living Host, Oral microflora Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium Eubacterium yurii BACTERIAL Eubacterium yurii margaretiae ATCC 43715 ATCC 43715 Eubacterium yurii subsp. margaretiae ATCC 43715 Yes Gi04122 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Human Microbiome Project (HMP), Medical, Human Pathogen 264029 004924_GCAT 379 0 0 0 0 USA subgingival dental plaque, Maryland ATCC USA Homo sapiens Oral Dental plaque Anaerobe Mesophile gram+ Free living Host, Oral microflora Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium BACTERIAL Eubacterium saburreum VPI 11763, DSM 3986 VPI 11763, DSM 3986 Eubacterium saburreum ATCC 33271, DSM 3986 Yes Gi04123 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Human Microbiome Project (HMP), Medical, Human Pathogen 467210 004925_GCAT 381 0 0 0 0 USA Human dental plaque DSMZ Homo sapiens Oral Dental plaque Anaerobe Mesophile gram+ Free living Host, Oral microflora Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Mobiluncus Mobiluncus curtisii BACTERIAL Mobiluncus curtisii holmesii ATCC 35242 ATCC 35242 Mobiluncus curtisii subsp. holmesii ATCC 35242 Yes Gi04125 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 144178 004927_GCAT 576 0 0 0 0 USA Human vagina ATCC Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Mesophile gram+ Free living Host Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Serratia Serratia odorifera BACTERIAL Serratia odorifera DSM 4582 DSM 4582 NCTC 11214, CIP 79.01, ATCC 33077, DSM 4582, ICPB 3995 Yes Gi04126 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 667129 40087 004928_GCAT 758 0 0 0 0 USA sputum, Bordeaux, France DSM 44.837368 -0.576144 Homo sapiens Airways Sputum Respiratory tract Facultative Rod-shaped Mesophile gram- Free living Host Motile Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Pseudoramibacter BACTERIAL Pseudoramibacter alactolyticus ATCC 23263 ATCC 23263 ATCC 23263, DSM 3980 Yes Gi04127 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 113287 004929_GCAT 721 0 0 0 0 454-FLX USA Human oral flora ATCC Homo sapiens Oral Mesophile gram+ Free living Host Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurella Pasteurella dagmatis BACTERIAL Pasteurella dagmatis ATCC 43325 ATCC 43325 NCTC 11617, ATCC 43325 Yes Gi04129 Gi04128 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 667128 40085 004930_GCAT 621 0 Awaiting DNA 0 0 0 USA Human nose ATCC Homo sapiens Airways Nasal Mesophile gram- Free living Host, Human airways Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Parascardovia BACTERIAL Parascardovia denticolens DSM 10105 DSM 10105 DSM 10105 Yes Gi04175 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 78258 005007_GCAT 620 0 0 0 0 USA Human dental caries DSMZ Homo sapiens Oral Mesophile gram+ Free living Host Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Lachnospira BACTERIAL Lachnospira multipara D32 D32 Gi04131 Genome complete Public Li RW robert.li@ars.usda.gov Biotechnological 28051 004933_GCAT 0 Draft 19485729 Edena & Velvet 500x Metagene 0 0 0 Illumina USA Ovine rumen; New Zealand New Zealand 3592909 Bovine Gastrointestinal tract Rumen Anaerobe Sporulating Mesophile gram+ Free living None Cellulose degrader Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas BACTERIAL Porphyromonas catoniae ATCC 51270 ATCC 51270 JCM 13863, CCUG 41358, NCTC 13056, ATCC 51270 Yes Gi04132 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 41976 004934_GCAT 636 0 0 0 0 USA ATCC Homo sapiens Oral Mesophile gram- Free living Host Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Lautropia BACTERIAL Lautropia mirabilis ATCC 51599 ATCC 51599 NCTC 12852, ATCC 51599 Yes Gi04134 Genome incomplete Public BCM-HGSC BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 47671 004936_GCAT 551 0 0 0 0 USA Gingival margin of healthy human ATCC Homo sapiens Female Healthy Oral Gingival crevices Mesophile gram- Free living Host Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Klebsiella Klebsiella pneumoniae BACTERIAL Klebsiella pneumoniae rhinoscleromatis ATCC 13884 ATCC 13884 Klebsiella pneumoniae subsp. rhinoscleromatis NCTC 5046, ATCC 13884 Yes Gi04135 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 667127 40083 004937_GCAT 484 0 Awaiting DNA 0 0 0 USA Human airways sample ATCC nose of patient in Sumatra Malaysia Homo sapiens Patient Airways Nasal Mesophile gram- Free living None Host, Human airways Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Kingella BACTERIAL Kingella kingae ATCC 23330 ATCC 23330 ATCC 23330 Yes Gi04136 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 504 004938_GCAT 476 0 0 0 0 USA ATCC Homo sapiens Airways Nasal Mesophile gram- Free living None Host Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter gracilis BACTERIAL Campylobacter gracilis ATCC 33236 ATCC 33236 ATCC 33236 Yes Gi04138 Genome-Survey incomplete Public The Forsyth Institute Medical, Human Oral Microbiome Project (HOMP) 553220 004940_GCAT 151146 0 Draft 384 0 0 46.2 USA Human gingival sulcus, USA USA Human gingival sulcus, USA Homo sapiens Oral Gingival crevices Obligate anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Chains, Singles None Human oral microflora, Host, Gingival crevices Nonmotile Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter BACTERIAL Campylobacter rectus ATCC 33238 ATCC 33238 ATCC 33238 Yes Gi04139 Genome-Survey incomplete Public The Forsyth Institute Medical, Human Oral Microbiome Project (HOMP) 203 004941_GCAT 0 Draft 356 0 0 45 USA human periodontal pocket Homo sapiens Oral Periodontal Obligate anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Chains, Singles None Human oral microflora, Host, Gingival crevices Nonmotile Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter BACTERIAL Campylobacter showae ATCC 51146 ATCC 51146 CCUG 30254, ATCC 51146 Yes Gi04140 Genome-Survey incomplete Public The Forsyth Institute Human Oral Microbiome Project (HOMP), Medical 204 004942_GCAT 0 Draft 352 0 0 44 USA Dental plaque of human gingival crevice, healthy adult, Tokyo, Japan Japan Tokyo, Japan 35.689488 139.691706 Homo sapiens Adult Healthy Oral Gingival crevices Obligate anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Chains, Singles None Gingival crevices, Human oral microflora, Host Nonmotile Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter BACTERIAL Campylobacter faecalis ATCC 19433 ATCC 19433 ATCC 19433, NCDO 581, JCM 8726, NCTC 775, DSM 20478 Yes Gi04141 Genome-Survey incomplete Public US-EPA Medical, Human Oral Microbiome Project (HOMP) 119231 004943_GCAT 0 Draft 225 0 0 44 USA Homo sapiens Oral Gingival crevices Obligate anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Chains, Singles None Human oral microflora, Host, Gingival crevices Nonmotile Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium BACTERIAL Eubacterium infirmum ATCC 700433 ATCC 700433 NCTC 12940, ATCC 700433 Gi04142 Genome-Survey incomplete Public The Forsyth Institute Medical, Human Oral Microbiome Project (HOMP) 56774 004944_GCAT 0 Draft 413 0 0 40.4 USA Human periodontal pocket Homo sapiens Oral Periodontal Mesophile gram+ Free living None Host, Human oral microflora Bacteria Synergistetes Synetgistia Synergistales Synergistaceae Jonquetella Jonquetella anthropi BACTERIAL Jonquetella anthropi E3_33 E1 E3_33 E1 BEI HM-17 Unknown Gi04143 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 645512 33111 004945_GCAT 883 HOMD: tax_777 0 ACOO00000000, NZ_ACOO00000000 Draft 42.4x 45 1782 0 59.4 454 USA infected root canal Izard/Dewhirst 18048718 Homo sapiens Patient with infected root canal Oral Obligate anaerobe Rod-shaped Mesophile 0.8 - 0.9 um 1.4 - 1.7 um gram- Free living None Host 37 Motile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus rhamnosus Unknown Gi04145 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 47715 004947_GCAT 541 0 Awaiting DNA 0 0 0 USA Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Mesophile gram- Free living None Host Nonmotile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Buchnera Buchnera aphidicola BACTERIAL Buchnera aphidicola LSR1 LSR1 Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum) Gi04167 Genome incomplete Public BCM-HGSC Evolutionary, Biotechnological 593275 33811 004986_GCAT 0 NZ_ACFK00000000 Draft 1300 0 26 USA Acyrthosiphon pisum Acyrthosiphon pisum Acyrthosiphon pisum Mesophile 3 um gram- Symbiotic Acyrthosiphon pisum 7029 Singles None Insect endosymbiont, Host, Endosymbiont unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil microbial community from FACE and OTC sites from FACE and OTC sites FACE and OTC Sites- Soil Community Gm00151 Metagenome incomplete Public DOE Joint Genome Institute DOE Kuske CR kuske@lanl.gov Environmental 004956_GCAT 0 Awaiting DNA 0 0 0 454-Titanium USA Multiple soil sites (FACE) in the US USA Soil Bacteria Firmicutes Bacilli Bacillales Bacillaceae Geobacillus BACTERIAL Geobacillus stearothermophilus T1 T1 Gi04153 Genome incomplete Public Fasteris SA Sikary O onit@tx.technion.ac.il Bioremediation, Environmental, Biotechnological 1422 38099 38099 004958_GCAT 0 In progress 0 0 0 Israel Anaerobe Rod-shaped Sporulating Thermophile gram+ Free living None Soil Motile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Dermacoccaceae Dermacoccus Dermacoccus sp. Ellin185 BACTERIAL Dermacoccus sp. Ellin185 Ellin185 Dermacoccus sp. Ellin185 BEI HM-112 Unknown Gi04154 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 188626 34079 004959_GCAT 321 0 In progress 0 0 0 USA Human skin sample Homo sapiens Skin Right arm Aerobe Mesophile gram+ Free living None Host, Human skin Radiation resistant Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis BACTERIAL Staphylococcus epidermidis SK135 SK135 Staphylococcus epidermidis SK135 BEI HM-118 Unknown Gi04155 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 596317 34077 004960_GCAT 797 0 In progress 0 0 0 USA Human skin Blaser Homo sapiens Skin Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 30 - 37 Nonmotile Pathogen, Meticillin resistant Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Mobiluncus Mobiluncus mulieris BACTERIAL Mobiluncus mulieris 28-1 28-1 Mobiluncus mulieris 28-1 BEI HM-125 Unknown Gi04156 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 596328 34103 004961_GCAT 578 0 In progress 0 0 0 USA Homo sapiens Urogenital tract Vaginal Anaerobe Mesophile gram+ Free living Bacterial vaginosis Host, Vagina microflora Motile Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema Treponema vincentii BACTERIAL Treponema vincentii ATCC 35580 ATCC 35580 Treponema vincentii ATCC 35580 ATCC 35580 Unknown Gi04157 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Human Microbiome Project (HMP), Medical 596324 34095 004962_GCAT 888 0 NZ_ACYH00000000, ACYH00000000 Draft 15x 79 2514 2615 45 USA patient with periodontitis Dewhirst Homo sapiens Oral Spiral-shaped Mesophile gram- Free living Host Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus jensenii BACTERIAL Lactobacillus jensenii 269-3 269-3 Lactobacillus jensenii 269-3 Unknown Gi04158 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 596325 34097 004963_GCAT 885 0 ACOY00000000, NZ_ACOY00000000 Complete 40x 57 1688 1624 34 454 USA human vaginal cavity Osel Homo sapiens Female Urogenital tract Vaginal Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Host, Human vaginal microflora Nonmotile unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fecal microbiome of Human of Human from Obese and Lean Twins Human Gut Microbiome from Obese and Lean Twins Gm00153 Metagenome complete Public Washington Univ NIH Gordon JI jgordon@wustl.edu 2009-01-22 Nature 457, 480-4 Medical 408170 32089 SRP000319 004964_GCAT 0 Genbank Complete 0 0 0 USA feces of monozygotic and dizygotic twins and their mothers feces of monozygotic and dizygotic twins and their mothers Homo sapiens Female Gastrointestinal tract Feces adult female monozygotic and dizygotic twin pairs concordant for leanness or obesity, and their mothers None Host, Human fecal unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fecal microbiome of Human of Human MetaHIT MetaHit - Human Intestinal Tract Metagenomes Gm00154 Metagenome incomplete Public European Consortium, Genoscope European Union Ehrlich D dusko.ehrlich@jouy.inra.fr Medical 408170 32811 004965_GCAT 0 In progress 0 0 0 European Consortium Human GI tract Homo sapiens Gastrointestinal tract Feces None Host, Human fecal unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fecal microbiome of Human of Human with bacterial infections Metagenomic Diagnosis of Bacterial Infections Gm00157 Metagenome complete Public Osaka Univ, RIKEN Iida T iida@biken.osaka-u.ac.jp 2008-11-01 Emerg Infect Dis 14, 1784-6 Medical 408170 30563 SRA001127 004968_GCAT 0 Complete 0 0 0 454 Japan Human fecal sample Japan Homo sapiens Male 34 yrs old Patient with diarrhea Gastrointestinal tract Feces None Host, Human fecal unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Freshwater microbial community contaminated with Vibrio cholerae contaminated with Vibrio cholerae Metagenomic Water Samples from Rita Colwell Gm00158 Metagenome incomplete Public Univ of Maryland, IGS Environmental 33243 SRA003721 004969_GCAT 0 Complete 0 0 0 USA USA None Fresh water unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fecal microbiome of Human of Human Micro-Obes Micro-Obes - Human Intestinal Tract Metagenomes Gm00159 Metagenome incomplete Public Genoscope ANR Dore J joel.dore@jouy.inra.fr http://www.inra.fr/micro_obes_eng/contact Medical 408170 33303 004970_GCAT 0 In progress 0 0 0 France stool samples of human volunteers enrolled in a clinical trial with controlled nutritional transition Homo sapiens Gastrointestinal tract Feces None Host, Human fecal unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil microbial communities from Salton Sea from Salton Sea anoxic sediment Salton Sea Metagenomic Project Gm00161 Metagenome complete Public UCSB Dinsdale EA elizabeth_dinsdale@hotmail.com 2008-04-03 Nature 452, 629-32 Evolutionary, Environmental 449393 28613 004972_GCAT 0 Complete 0 0 0 USA anoxic sediment of the Salton Sea, CA anoxic sediment of the Salton Sea, CA None Sediment unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Freshwater viral communities from Limnopolar Water Samples from Limnopolar Water Samples Viral Metagenome from Hot Springs Gm00162 Metagenome incomplete Public CBMSO Environmental 449393 34669 004973_GCAT 0 In progress 206000 0 0 454 USA Ultra-oligotrophic freshwater lake in the inland pateau of Byers Peninsula, western end of Livingstone Island, South Shetland Islands, Antarctica. November 2006 and January 2007 -62.633333 -61.066667 4 meters Thermophile None Fresh water, Hot spring Alkaline Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp. BACTERIAL Desulfovibrio sp. U5L U5L Gi04159 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 885 004978_GCAT 0 Awaiting DNA 0 0 0 USA Obligate anaerobe Rod-shaped Sporulating Mesophile gram- Free living None Mud, Sea water, Soil, Animal intestinal microflora, Fresh water 37 Motile Hydrogen sulfide gas release, Sulfate reducer Bacteria Cyanobacteria Oscillatoriales Spirulina Spirulina major BACTERIAL Spirulina major PCC 6313 PCC 6313 PCC 6313 Gi04160 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 270636 004979_GCAT 0 In progress 0 0 0 USA Mesophile gram- Free living None Bacteria Cyanobacteria Pleurocapsales Chroococcidiopsis Chroococcidiopsis thermalis BACTERIAL Chroococcidiopsis thermalis PCC 7203 PCC 7203 ATCC 27900, PCC 7203, CCAP 1451/1 Yes Gi04161 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 251229 38119 004980_GCAT 0 In progress 0 0 45.8 USA soil sample, near Greifswald, East Germany 1962 Germany soil sample, near Greifswald, East Germany 54.10114 13.3885 Sphere-shaped Nonsporulating Mesophile Stenohaline 7-9 Dark green gram- Free living Cubic clusters None Soil Nitrogen fixer- anaerobic Nonmotile Nitrogen fixation Photosynthetic, Chemoheterotroph Bacteria Cyanobacteria Oscillatoriales Oscillatoria Oscillatoria acuminata BACTERIAL Oscillatoria acuminata PCC 6304 PCC 6304 PCC 6304 Gi04162 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 56110 004981_GCAT 0 In progress 0 0 0 USA Mesophile gram- Free living None Bacteria Cyanobacteria Chroococcales Synechocystis BACTERIAL Synechocystis sp. PCC 6308 PCC 6308 PCC 6308 Gi04163 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 113355 004982_GCAT 0 In progress 0 0 0 USA Mesophile gram- Free living None Bacteria Cyanobacteria Chroococcales Cyanobacterium Cyanobacterium stanieri BACTERIAL Cyanobacterium stanieri PCC 7202 PCC 7202 ATCC 29140, PCC 7202 Gi04164 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 292563 39697 004983_GCAT 0 In progress 0 0 0 USA Mesophile gram- Free living None Bacteria Cyanobacteria Chroococcales Cyanobacterium BACTERIAL Synechococcus sp. PCC 7502 PCC 7502 ATCC 29172, PCC 7502 Gi04166 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 195252 004985_GCAT 0 In progress 0 0 0 USA Mesophile gram- Free living None Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei Pakistan 9 Pakistan 9 Burkholderia pseudomallei Pakistan 9 Gi04207 Genome incomplete Public Los Alamos National Laboratory, J. Craig Venter Institute Brettin T brettin@lanl.gov Animal Pathogen, Medical, Human Pathogen 595498 33789 005042_GCAT 643886077 NZ_ACKA00000000 Draft 9x 71 7147 7557 68 Sanger USA Human host in Pakistan 1988 Pakistan Homo sapiens Aerobe Rod-shaped Mesophile gram- Free living Melioidosis Soil Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. HV10 BACTERIAL Vibrio sp. HV10 HV10 Vibrio sp. HV10 Gi04169 Genome incomplete Public Univ of Maryland, IGS Environmental, Cancer treatment 565144 32095 SRS001022 004988_GCAT 0 0 0 0 USA sea slug Elysia rufescens Elysia rufescens Facultative Nonsporulating Mesophile gram- Symbiotic Elysia rufescens None Marine, Host Motile Eukaryota Basidiomycota Agaricomycetes Agaricales Agaricaceae Agaricus EUKARYAL Agaricus bisporus U1 U1 common mushroom Ge00315 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 5341 004989_GCAT 0 Complete 0 0 0 USA None Eukaryota Streptophyta Ranunculales Ranunculaceae Aquilegia EUKARYAL Aquilegia coerulea Goldsmith common mushroom Gi04170 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 218851 33681 004990_GCAT 0 In progress 0 0 0 USA None Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Aspergillus Aspergillus aculeatus EUKARYAL Aspergillus aculeatus Gi04171 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Fermentation, Biotechnological 5053 004991_GCAT 0 Awaiting DNA 0 0 0 Sanger USA Filament-shaped None Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Aspergillus Aspergillus carbonarius EUKARYAL Aspergillus carbonarius ITEM 5010 ITEM 5010 Aspergillus carbonarius ITEM 5010 Gi04172 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Fermentation, Biotechnological 602072 34741 004992_GCAT 0 Awaiting DNA 0 0 0 Sanger USA Filament-shaped None Ochratoxin A producer Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Aspergillus Aspergillus carbonarius EUKARYAL Aspergillus carbonarius ITEM 5010 ITEM 5010 Ge00316 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Fermentation, Biotechnological 602072 004993_GCAT 0 Draft 0 0 0 Sanger USA Filament-shaped None Ochratoxin A producer Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Aspergillus Aspergillus terreus EUKARYAL Aspergillus terreus Ge00317 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Fermentation, Biotechnological 33178 004994_GCAT 0 Complete 0 0 0 USA Filament-shaped None Ochratoxin A producer Eukaryota Chordata Ascidiacea Stolidobranchia Styelidae Botryllus Botryllus schlosseri EUKARYAL Botryllus schlosseri tunicates Ge00319 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 30301 004996_GCAT 0 Complete 0 0 0 USA Eukaryota Streptophyta Liliopsida Poales Poaceae Panicum EUKARYAL Panicum virgatum WS4U WS4U Switchgrass Ge00320 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 38727 004997_GCAT 0 0 0 0 USA Eukaryota Streptophyta Liliopsida Poales Poaceae Panicum EUKARYAL Panicum virgatum WS8U WS8U Switchgrass Ge00321 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 38727 004998_GCAT 0 0 0 0 USA Eukaryota Streptophyta Liliopsida Poales Poaceae Panicum EUKARYAL Panicum virgatum WS98-1P WS98-1P Switchgrass Ge00322 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 38727 004999_GCAT 0 0 0 0 USA Eukaryota Streptophyta Liliopsida Poales Poaceae Panicum EUKARYAL Panicum virgatum WS98-SB WS98-SB Switchgrass Ge00323 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 38727 005000_GCAT 0 Complete 0 0 0 USA Eukaryota Streptophyta Liliopsida Poales Poaceae Panicum EUKARYAL Panicum virgatum KY1625 KY1625 Switchgrass Ge00324 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 38727 005001_GCAT 0 Complete 0 0 0 USA Eukaryota Ascomycota Dothideomycetes Capnodiales Mycosphaerellaceae Cercospora Cercospora beticola EUKARYAL Cercospora beticola Ge00325 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 122368 005002_GCAT 0 Complete 0 0 0 USA Eukaryota Chordata Ascidiacea Enterogona Cionidae Ciona Ciona intestinalis EUKARYAL Ciona intestinalis Sea squirt Ge00326 EST complete Public DOE Joint Genome Institute DOE Rokhsar D dsrokhsar@lbl.gov Evolutionary 7719 005003_GCAT 0 Complete 0 0 0 Sanger USA Mesophile None Fresh water Eukaryota Chlorophyta Trebouxiophyceae Coccomyxaceae Coccomyxa EUKARYAL Coccomyxa sp. C-169 C-169 Gi04173 Genome complete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 574566 32657 005004_GCAT 0 Draft 0 0 0 USA Mesophile None Fresh water Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Gardnerella BACTERIAL Gardnerella vaginalis JCM11026 JCM11026 JCM11026, CCUG 3717, ATCC 14018 Yes Gi04174 Genome incomplete Public Univ of Tokyo Hattori M hattori@k.u-tokyo.ac.jp Medical, Human Microbiome Project (HMP) 2702 005005_GCAT 947 0 0 0 0 Japan vaginal secretions Homo sapiens Female Urogenital tract Vaginal secretions Vaginal Rod-shaped Nonsporulating Mesophile gram+ Free living Pairs, Singles None Host, Human intestinal microflora Motile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Parascardovia BACTERIAL Parascardovia denticolens JCM12538 JCM12538 JCM12538 Yes Gi04177 Gc00966 Genome incomplete Public Univ of Tokyo Hattori M hattori@k.u-tokyo.ac.jp http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Biotechnological, Medical, Human Microbiome Project (HMP), Food industry 78258 005006_GCAT 952 0 0 0 0 Japan Homo sapiens Oral Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living None Human intestinal microflora, Host, Birds intestinal microflora, Mammalian intestinal microflora Nonmotile Probiotic, Non-Pathogen Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Scardovia BACTERIAL Scardovia inopinata JCM12537 JCM12537 DSM 10107, JCM12537 Yes Gi04176 Genome incomplete Public Univ of Tokyo Hattori M hattori@k.u-tokyo.ac.jp http://www.cb.k.u-tokyo.ac.jp/hattorilab/doku.php?id=ja:frontpage Biotechnological, Medical, Human Microbiome Project (HMP), Food industry 78259 005008_GCAT 966 0 0 0 0 Japan Human dental caries Homo sapiens Oral Dental plaque Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living None Mammalian intestinal microflora, Human intestinal microflora, Host, Birds intestinal microflora Nonmotile Non-Pathogen, Probiotic Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Ruminococcus BACTERIAL Ruminococcus albus V10Sc8a V10Sc8a Unknown Gi04178 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 1264 005009_GCAT 958 0 0 0 0 United Kingdom Homo sapiens Gastrointestinal tract Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living None Host 40 Nonmotile Cellulose degrader Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Aequorivita BACTERIAL Aequorivita sublithincola QSSC9-3, DSM 14238 QSSC9-3, DSM 14238 DSM 14238, ACAM 643 Yes Gi04179 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 101385 005010_GCAT 0 In progress 0 0 0 454-Titanium, Illumina USA Antarctic winter sea water 12361255 Obligate aerobe Rod-shaped Psychrotolerant Orange gram- Free living Marine Nonmotile Chemoheterotroph Bacteria Deinococcus-Thermus Deinococci Deinococcales Deinococcaceae Deinococcus BACTERIAL Deinococcus hopiensis KR-140, DSM 18049 KR-140, DSM 18049 DSM 18049, LMG 22133, NRRL B-23943 Yes Gi04180 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 309885 005011_GCAT 0 In progress 0 0 0 Illumina, 454-Titanium USA Soil, sonoran desert; USA, Arizona USA 16151108 Soil, sonoran desert; USA, Arizona 32.927838 -112.304867 Aerobe Coccus-shaped Mesophile gram+ Free living Soil Nonmotile Radiation resistant Bacteria Deinococcus-Thermus Deinococci Deinococcales Deinococcaceae Deinococcus BACTERIAL Deinococcus maricopensis LB-34, DSM 21211 LB-34, DSM 21211 LMG 22137, DSM 21211, NRRL B-23946 Yes Gi04181 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 309887 005012_GCAT 0 Awaiting DNA 0 0 0 Illumina, 454-Titanium USA Soil, sonoran desert; USA, Arizona USA 16151108 Soil, sonoran desert; USA, Arizona 32.927838 -112.304867 Aerobe Coccus-shaped Mesophile gram+ Free living Soil Nonmotile Radiation resistant Bacteria Deinococcus-Thermus Deinococci Deinococcales Deinococcaceae Deinococcus BACTERIAL Deinococcus papagonensis KR-119, DSM 18022 KR-119, DSM 18022 NRRL B-23942, DSM 18022, LMG 22140 No Gi04182 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 309890 005013_GCAT 0 Awaiting DNA 0 0 0 454-Titanium, Illumina USA Soil, sonoran desert; USA, Arizona USA 16151108 Soil, sonoran desert; USA, Arizona 32.927838 -112.304867 Aerobe Coccus-shaped Mesophile gram+ Free living Soil Nonmotile Radiation resistant Bacteria Deinococcus-Thermus Deinococci Deinococcales Deinococcaceae Deinococcus BACTERIAL Deinococcus peraridilitoris KR-200, DSM 19664 KR-200, DSM 19664 DSM 19664, KR-200, CIP 109416, LMG 22246 Yes Gi04183 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 432329 005014_GCAT 0 Awaiting DNA 0 0 0 454-Titanium, Illumina USA Arid soil collected from a coastal desert in Chile Chile 17625166 Aerobe Coccus-shaped Mesophile gram+ Free living Soil Nonmotile Radiation resistant Bacteria Deinococcus-Thermus Deinococci Deinococcales Deinococcaceae Deinococcus BACTERIAL Deinococcus pimensis KR-235, DSM 21231 KR-235, DSM 21231 NRRL B-23994, LMG 22244, DSM 21231 Yes Gi04184 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 309888 005015_GCAT 0 Awaiting DNA 0 0 0 454-Titanium, Illumina USA Soil, sonoran desert; USA, Arizona USA 16151108 Soil, sonoran desert; USA, Arizona 32.927838 -112.304867 Aerobe Coccus-shaped Mesophile gram+ Free living Soil Nonmotile Radiation resistant Bacteria Deinococcus-Thermus Deinococci Deinococcales Deinococcaceae Deinococcus BACTERIAL Deinococcus proteolyticus MRP, DSM 20540 MRP, DSM 20540 ATCC 35074, DSM 20540, CCM 2703 Yes Gi04185 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 55148 005016_GCAT 0 Awaiting DNA 0 0 0 Illumina, 454-Titanium USA Faeces of Lama glama Aerobe Coccus-shaped Mesophile gram+ Free living Soil Nonmotile Radiation resistant Bacteria Deinococcus-Thermus Deinococci Deinococcales Deinococcaceae Deinococcus BACTERIAL Deinococcus saxicola AA-1444, DSM 15974 AA-1444, DSM 15974 NRRL B-41043, DSM 15974, CIP 109040 Yes Gi04186 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 249406 005017_GCAT 0 Awaiting DNA 0 0 0 Illumina, 454-Titanium USA antarctic soil and rock samples 15612620 Aerobe Coccus-shaped Mesophile Orange gram+ Free living Soil Nonmotile Radiation resistant Bacteria Deinococcus-Thermus Deinococci Deinococcales Deinococcaceae Deinococcus BACTERIAL Deinococcus sonorensis KR-87, DSM 21209 KR-87, DSM 21209 NRRL B-23941, LMG 22172, DSM 21209 Yes Gi04187 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 309891 005018_GCAT 0 Awaiting DNA 0 0 0 Illumina, 454-Titanium USA Soil, sonoran desert; USA, Arizona USA 16151108 Soil, sonoran desert; USA, Arizona 32.972495 -112.302704 Aerobe Coccus-shaped Mesophile Orange gram+ Free living Soil Nonmotile Radiation resistant Bacteria Deinococcus-Thermus Deinococci Deinococcales Deinococcaceae Deinococcus BACTERIAL Deinococcus yavapaiensis KR-236, DSM 18048 KR-236, DSM 18048 LMG 22171, NRRL B-23960, DSM 18048 Yes Gi04188 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 309889 005019_GCAT 0 Awaiting DNA 0 0 0 Illumina, 454-Titanium USA Soil, sonoran desert; USA, Arizona USA 16151108 Soil, sonoran desert; USA, Arizona 32.972495 -112.302704 Aerobe Coccus-shaped Mesophile Orange gram+ Free living Soil Nonmotile Radiation resistant Bacteria Bacteroidetes Flavobacteria Flavobacteriales Cryomorphaceae Fluviicola BACTERIAL Fluviicola taffensis RW262, DSM 16823 RW262, DSM 16823 DSM 16823, NCIMB 13979 Yes Gi04189 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org GEBA, Tree of Life 191579 005020_GCAT 0 Awaiting DNA 0 0 37.2 Illumina, 454-Titanium USA Water of the River Taff, Cardiff, UK January 2000 United Kingdom 16166730 Cardiff, UK 51.481307 -3.180498 Aerobe Mesophile gram- Free living Fresh water, Hot spring Motile Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Gillisia BACTERIAL Gillisia limnaea R-8282, DSM 15749 R-8282, DSM 15749 LMG 21470, DSM 15749 Yes Gi04190 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 195907 005021_GCAT 0 Awaiting DNA 0 0 0 Illumina, 454-Titanium USA Microbial mats in Lake Fryxell, McMurdo Dry Valleys, Antarctica 15023957 Lake Fryxell, McMurdo Dry Valleys, Antarctica -77.613983 163.184624 Aerobe Rod-shaped Psychrophile Yellow gram- Free living Fresh water Motile Chemoheterotroph Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae BACTERIAL Bacteroides ureolyticus Unknown Gi04192 Genome incomplete Public NIH Medical, Human Microbiome Project (HMP) 827 005024_GCAT 141 0 0 0 0 USA Human skin with Chronic wounds Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus jensenii BACTERIAL Lactobacillus jensenii 208-1 208-1 Lactobacillus jensenii 208-1 Unknown Gi04193 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 596326 34099 005025_GCAT 886 0 In progress 0 0 0 USA Osel Homo sapiens Female Urogenital tract Vaginal Mesophile gram+ Free living Pairs Skin microflora, Host, Human skin Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Wolbachia BACTERIAL Wolbachia sp wRi wRi Gc00967 Genome Complete and Published Public Uppsala Univ Andersson SGE WRi 2009-03-24 PNAS 106, 5725-30 Evolutionary, Biotechnological 66084 33273 005026_GCAT 643692055 NC_012416 Complete Level 6: Finished 1445 1303 1 0 35 Sanger USA Drosophila simulans Aerobe Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Drosophila simulans None Endosymbiont, Host Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella ceti BACTERIAL Brucella ceti Cudo Cudo Gi04194 Genome incomplete Public Los Alamos National Laboratory Biothreat, Medical, Mammal Pathogen, Human Pathogen 595497 33611 005027_GCAT 643886153 NZ_ACJD00000000 Draft 7 3389 3363 57 USA bottlenose dolphin Tursiops truncatus Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Brucellosis Host 37 Nonmotile Pathogen, Intracellular pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae P1031 P1031 Gc00972 Genome Complete and Published Public J. Craig Venter Institute JCVI http://www.jcvi.org/cms/contact/locations/ SPP 2009-03-27 Unpublished Medical, Human Pathogen 488223 28041 005028_GCAT 643692042 NC_012467 Complete 2111 2254 1 0 39 USA Homo sapiens Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram- Free living Chains, Pairs Pneumonia Host, Human nasopharyngeal microflora Nonmotile Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes 4b CLIP 80459 4b CLIP 80459 4b Listeria monocytogenes HPB2262 Gc00977 Genome Complete and Published Public Institut Pasteur Rusniok C rusniok@pasteur.fr Lm4b 2009-03-30 Unpublished Animal Pathogen, Cattle Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 634178 32207 005029_GCAT 643692027 NC_012488 Complete Level 6: Finished 2912 2972 1 0 38 France Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Chains, Singles Food poisoning, Listeriosis Soil, Intestinal microflora, Food, Fresh water 30 - 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus BACTERIAL Vibrio parahaemolyticus K5030 K5030 Gi04195 Genome incomplete Public J. Craig Venter Institute JCVI Medical, Human Pathogen 627611 36311 005030_GCAT 0 NZ_ACKB00000000 Draft 8.33x 164 5028 0 45 Sanger USA Homo sapiens Patien Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Food poisoning, Gastroenteritis Fresh water Motile Heterotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Microbacteriaceae Pseudoclavibacter BACTERIAL Zimmermannella bifida Unknown Gi04196 Genome incomplete Public NIH Medical, Human Microbiome Project (HMP) 272239 005031_GCAT 881 0 0 0 0 USA Human skin Homo sapiens Skin Mesophile gram+ Free living Host Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas BACTERIAL Porphyromonas uenonis UP1091-7 UP1091-7 Unknown Gi04197 Genome incomplete Public NIH Medical, Human Microbiome Project (HMP) 281920 005032_GCAT 641 0 0 0 0 USA Homo sapiens Female Urogenital tract Vaginal Mesophile gram- Free living Host Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus crispatus 214-1 214-1 Unknown Gi04198 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 47770 005033_GCAT 891 0 0 0 0 USA Osel Human vaginal isolate Homo sapiens Urogenital tract Vaginal Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Human vaginal microflora, Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus gasseri BACTERIAL Lactobacillus gasseri 202-4 202-4 SV-16A-US Unknown Gi04199 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 630527 36379 005034_GCAT 890 0 NZ_ACOZ00000000, ACOZ00000000 Complete Level 2: High-Quality Draft 128x 70 1820 1821 34 454 USA human vaginal cavity Osel Homo sapiens Urogenital tract Vaginal Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Host, Human vaginal microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus equinus BACTERIAL Streptococcus equinus ATCC 9812 ATCC 9812 DSM 20558, ATCC 9812 Yes Gi04200 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 525379 005035_GCAT 819 0 DNA Received 0 0 0 USA ATCC Homo sapiens Gastrointestinal tract Gut Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus parasanguinis ATCC 15912 ATCC 15912 DSM 6778, ATCC 15912 Yes Gi04201 Genome incomplete Public BCM-HGSC NIH Medical, Human Microbiome Project (HMP) 1318 005036_GCAT 833 0 0 0 0 USA Homo sapiens Oral Aerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus pyogenes C98, ATCC 10782 C98, ATCC 10782 ATCC 10782 Unknown Gi04202 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrainsjcvi@bcm.edu Medical, Human Microbiome Project (HMP) 1314 005037_GCAT 841 0 Awaiting DNA 0 0 0 USA Human airways Homo sapiens Patient with rheumatic fever Airways Nasal Aerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Host Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus epidermidis ATCC 14990 ATCC 14990 DSM 20044, ATCC 14990 Yes Gi04203 Genome incomplete Public NIH Medical, Human Microbiome Project (HMP) 1282 005038_GCAT 788 0 0 0 0 USA Homo sapiens Airways Nasal Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae BACTERIAL Neisseria gonorrhoeae DGI2 DGI2 Gi04206 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 528348 34705 005041_GCAT 0 NZ_ACIG00000000 Draft 38.62x 134 2093 0 52 454 USA Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Gonorrhea Host Nonmotile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Enterobacter BACTERIAL Enterobacter cloacae P101 P101 Enterobacter cloacae Gi04208 Genome incomplete Public Univ of Florida Triplett EW ewt@ufl.edu Medical, Human Pathogen 550 005043_GCAT 210269 0 Draft 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Nosocomial infection Host Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis 4229 4229 Gi04209 Genome incomplete Public National Veterinary Inst, Uppsala Biothreat, Medical, Human Pathogen 634496 34519 005044_GCAT 0 0 0 0 Sweden Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Anthrax Soil Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis BACTERIAL Bacillus thuringiensis F14-1 F14-1 Gi04210 Genome incomplete Public Huazhong Agricultural Univ Medical 592025 32717 005045_GCAT 0 0 0 0 China Microaerophilic Rod-shaped Mesophile gram+ Free living None Host Nonmotile Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bartonellaceae Bartonella Bartonella grahamii BACTERIAL Bartonella grahamii as4aup as4aup Gc01038 Gi04211 Genome Complete and Published Public Univ of Uppsala Andersson S siv.andersson@ebc.uu.se http://web1.ebc.uu.se/molev/staff/siv.html Bgr 2009-06-20 PLoS Genetics 5, e1000546 Medical, Human Pathogen 634504 34873 005046_GCAT 0 NC_012846 Complete Level 6: Finished 2341 2022 1 1 38 Sweden Siv Andersson Aerobe Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Carrion's disease, Oroya fever Host, Blood Motile Pathogen Bacteria Bacteroidetes Flavobacteria Flavobacteriales Blattabacteriaceae Blattabacterium Blattabacterium sp. (Periplaneta americana) BACTERIAL Blattabacterium sp. BPLAN BPLAN Gi04212 Genome incomplete Public Univ of Arizona Pest control, Biotechnological 600809 32975 005047_GCAT 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Blattella germanica 6973 Singles None Insect endosymbiont, Host Nonmotile Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella abortus BACTERIAL Brucella abortus B3196 B3196 5 Brucella abortus bv. 5 str. B3196 ATCC 23452, BCCN R8 Gi04213 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biothreat, Medical, Mammal Pathogen, Human Pathogen 520453 36509 005048_GCAT 0 0 0 57 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Clusters, Singles Spontaneous abortion Host 37 Nonmotile Intracellular pathogen, Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella abortus BACTERIAL Brucella abortus NCTC 8038 NCTC 8038 NCTC 8038 Gi04214 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biothreat, Medical, Mammal Pathogen, Human Pathogen 575591 34743 005049_GCAT 0 0 0 57 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Clusters, Singles Spontaneous abortion Host 37 Nonmotile Pathogen, Intracellular pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella suis BACTERIAL Brucella suis bv 4, 40 bv 4, 40 4 Brucella suis bv. 4 str. 40 ATCC 23447, BCCN R15 Gi04215 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biothreat, Medical, Mammal Pathogen, Human Pathogen 520488 34745 005050_GCAT 0 In progress 0 0 57 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Chains, Pairs, Singles Spontaneous abortion Host 37 Nonmotile Intracellular pathogen, Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella sp. NVSL 07-0026 BACTERIAL Brucella sp. NVSL 07-0026 NVSL 07-0026 Gi04216 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biothreat, Medical, Mammal Pathogen, Human Pathogen 520448 36511 005051_GCAT 0 0 0 57 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Chains, Pairs, Singles Spontaneous abortion Host 37 Nonmotile Pathogen, Intracellular pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis E/Sweden2 E/Sweden2 E Chlamydia trachomatis Sweden2 Gi04219 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Animal Pathogen, Medical, Human Pathogen 634464 32371 005054_GCAT 0 0 0 0 United Kingdom male urethra Sweden Homo sapiens Male Urogenital tract Urethra Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Ocular infection Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis F/Sweden5 F/Sweden5 F Chlamydia trachomatis Sweden2 Gi04220 Genome incomplete Public Sanger Institute Wellcome Trust Parkhill J http://www.sanger.ac.uk/Users/parkhill/ Animal Pathogen, Medical, Human Pathogen 634467 32377 005055_GCAT 0 0 0 0 United Kingdom cervix Homo sapiens Urogenital tract Cervix Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Ocular infection Host Nonmotile Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium butyricum BACTERIAL Clostridium butyricum E4, BoNT E BL5262 E4, BoNT E BL5262 Clostridium butyricum E4 str. BoNT E BL5262 Gi04221 Genome incomplete Public J. Craig Venter Institute Medical, Human Pathogen 632245 34907 005056_GCAT 0 NZ_ACOM00000000 Draft 7x 13 4758 4418 28 Sanger USA Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains, Pairs, Singles Botulism Food 37 Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli HB101 HB101 Gi04223 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 634468 34111 005058_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Human intestinal microflora, Host 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli HT115 HT115 Gi04224 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 634469 34113 005059_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Human intestinal microflora, Host 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli KO11 KO11 Gi04225 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 595495 33875 005060_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs None Host, Human intestinal microflora 37 Motile Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori NCTC 11637 NCTC 11637 Helicobacter pylori NCTC 11637 DSM 4867;ATCC 43504;CCUG 17874, NCTC 11637 Yes Gi04227 Genome incomplete Public GuiYang Univ Medical, Human Pathogen 102618 36521 005062_GCAT 0 0 0 38 China Human gastric antrum Homo sapiens Gastrointestinal tract Gastric antrum Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Host, Human stomach 37 Motile Pathogen Bacteria Aquificae Aquificae (class) Aquificales Aquificaceae Hydrogenobacter Hydrogenobacter thermophilus BACTERIAL Hydrogenobacter thermophilus TK-6, DSM 06534 TK-6, DSM 06534 IAM 12695, DSM 06534 Gi04228 Genome incomplete Public Univ of Tokyo 608538 34131 005063_GCAT 1208 0 0 0 45 Japan Hot springs Hot springs Thermophile gram- Free living None 70 Hydrogen oxidizer Bacteria Proteobacteria Gammaproteobacteria Chromatiales Chromatiaceae Nitrosococcus Nitrosococcus halophilus BACTERIAL Nitrosococcus halophilus Nc4 Nc4 Gi04229 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Environmental, Biotechnological 472759 36589 005064_GCAT 0 0 0 0 USA Aerobe Mesophile gram- Free living None Marine Motile Ammonia-oxidizer, Nitrifying, Carbon sequestration Chemolithotroph, Autotroph Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma BACTERIAL Mycoplasma fermentans JER JER Gi04230 Genome incomplete Public Goettingen Genomics Laboratory Medical, Human Pathogen 2115 36551 005065_GCAT 307631 0 0 0 0 454 Germany Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Respiratory infection, Urogenital infection Host Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae BACTERIAL Neisseria gonorrhoeae F62 F62 Gi04231 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 528351 36329 005066_GCAT 0 0 0 52 454 USA Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Gonorrhea Host Nonmotile Bacteria Proteobacteria Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella longbeachae BACTERIAL Legionella longbeachae D-4968 D-4968 Gi04232 Genome incomplete Public CDC Medical, Human Pathogen 638315 36681 005067_GCAT 0 Complete 0 0 0 France clinical isolate Homo sapiens Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Legionellosis, Pneumonia Soil, Host, Fresh water Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus minor BACTERIAL Actinobacillus minor NM305 NM305 Actinobacillus minor NM305 Gi04233 Genome incomplete Public McGill Univ Medical 637911 36657 005068_GCAT 0 NZ_ACQL00000000 Draft 625x 197 2425 2461 39.3 Illumina Canada Facultative Rod-shaped Mesophile gram- Free living Chains, Pairs, Singles Human airways, Host, Respiratory tract Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis C68 C68 Enterococcus faecalis C68 Gi04237 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 627144 34867 005072_GCAT 0 0 0 0 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Urinary infection, Bacteremia, Endocarditis Host Nonmotile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Pantoea Pantoea sp. At-9b BACTERIAL Pantoea sp. At-9b. At-9b. Gi04238 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 592316 33803 005073_GCAT 0 NZ_ACYJ00000000 Draft Prodigal 86 6255 5726 54 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Leaf blight, Stewart's bacterial wilt Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Pectobacterium Pectobacterium carotovorum BACTERIAL Pectobacterium carotovorum PC1 PC1 Pectobacterium carotovorum subsp. carotovorum PC1 Gc01052 Gi04239 Genome Complete and Published Public DOE Joint Genome Institute Perna NT ntperna@wisc.edu PC1 2009-07-07 Unpublished Plant Pathogen, Agricultural 561230 31289 005074_GCAT 0 NC_012917 Complete Level 6: Finished Prodigal 4862 4398 1 0 51 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Soft rot Host Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa PAP7 PAP7 Pseudomonas aeruginosa OPPA8 Gi04241 Genome incomplete Public Technical Univ of Denmark Medical, Human Pathogen 566548 30821 005076_GCAT 0 0 0 0 Denmark Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae BACTERIAL Pseudomonas syringae FF5 FF5 syringae Pseudomonas syringae pv. syringae FF5 ATCC 11528 Gi04242 Genome incomplete Public The Sainsbury Laboratory Plant Pathogen, Agricultural 591153 33695 005077_GCAT 0 NZ_ACXZ00000000 Draft Velvet 100x 4578 5656 0 59 United Kingdom Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plant rot Plants Motile Pathogen Heterotroph Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia peacockii BACTERIAL Rickettsia peacockii Rustic Rustic Rickettsia peacockii RP22 Gc01018 Gi04368 Genome Complete and Published Public Univ of Minnesota RPR 2009-05-29 Unpublished Biothreat, Medical, Human Pathogen 562019 31309 005078_GCAT 0 NC_012730 Complete Level 6: Finished 1288 964 1 1 32 France Aerobe Rod-shaped Nonsporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Rocky Mountain Spotted Fever, Typhus Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica sv Abortusovis SSM0041 SSM0041 Abortusovis Salmonella enterica subsp. enterica serovar Abortusovis str. SSM0041 Gi04244 Genome incomplete Public Washington Univ WASHU webmaster@genome.wustl.edu Medical, Human Pathogen 596157 33453 005079_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Soil, Host, Fresh water, Food Motile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica sv Enteritidis P125109 P125109 Enteritidis Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 Gi04245 Genome incomplete Public Sanger Institute Medical, Human Pathogen 550537 31109 005080_GCAT 0 0 0 0 Korea Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica sv Infantis SARB27 SARB27 Infantis Salmonella enterica subsp. enterica serovar Infantis str. SARB27 Gi04246 Genome incomplete Public Washington Univ WASHU webmaster@genome.wustl.edu Medical, Human Pathogen 596155 33185 005081_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Soil, Host, Fresh water, Food Motile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica sv Muenchen SARB34 SARB34 Muenchen Salmonella enterica subsp. enterica serovar Muenchen str. SARB34 Gi04247 Genome incomplete Public Washington Univ WASHU webmaster@genome.wustl.edu Medical, Human Pathogen 596158 33455 005082_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Soil, Host, Fresh water, Food Motile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica sv Poona SGSC4934 SGSC4934 Poona Salmonella enterica subsp. enterica serovar Poona str. SGSC4934 Gi04248 Genome incomplete Public Washington Univ WASHU webmaster@genome.wustl.edu Medical, Human Pathogen 596156 33451 005083_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Host, Fresh water, Food, Soil Motile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica sv Typhi Ty21a Ty21a Typhi Salmonella enterica subsp. enterica serovar Typhi str. Ty21a Gi04249 Genome incomplete Public FDA-CBER Medical, Human Pathogen 527001 34855 005084_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Host, Fresh water, Food, Soil Motile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica sv Typhi SGSC2661 SGSC2661 Typhi Salmonella enterica subsp. enterica serovar Typhi str. SGSC2661 Gi04250 Genome incomplete Public Washington Univ WASHU webmaster@genome.wustl.edu Medical, Human Pathogen 596159 33457 005085_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Host, Fresh water, Food, Soil Motile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica sv Typhimurium 14028S 14028S Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Gi04251 Genome incomplete Public Univ of Arizona Medical, Human Pathogen 588858 33067 005086_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Host, Fresh water, Food, Soil Motile Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus A5937 A5937 Gi04252 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 553565 36465 005087_GCAT 0 Draft 19.9x 2827 2763 32 454-FLX, Illumina USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus A5948 A5948 Gi04253 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Human Pathogen, Medical 553567 36467 005088_GCAT 0 NZ_ACKD00000000 Draft 19.36x 2846 2739 32 454-FLX, Illumina USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Singles, Clusters Septicemia, Pneumonia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus A6224 A6224 Gi04254 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 553568 36469 005089_GCAT 0 NZ_ACKE00000000 Draft 22.70x 2870 2812 32 454-FLX, Illumina USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus A6300 A6300 Gi04255 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 553571 36471 005090_GCAT 0 Draft 20.01x 2816 2731 32 Illumina, 454-FLX USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus A8115 A8115 Gi04256 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 553573 36473 005091_GCAT 0 NZ_ACKG00000000 Draft 38 2746 2596 32 Illumina, 454-FLX USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Septicemia, Pneumonia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus A9299 A9299 Gi04257 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 553581 36475 005092_GCAT 0 NZ_ACKH00000000 Draft 17.04x 48 2782 2682 32 Illumina, 454-FLX USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Singles, Clusters Septicemia, Pneumonia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus A9635 A9635 Gi04258 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Human Pathogen, Medical 553583 36475 005093_GCAT 0 NZ_ACKI00000000 Draft 15.82x 40 2731 2649 32 454-FLX, Illumina USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Singles, Clusters Septicemia, Pneumonia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus A9719 A9719 Gi04259 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 553588 36479 005094_GCAT 0 NZ_ACKJ00000000 Draft 14.98x 60 2856 2817 32 454-FLX, Illumina USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 30 - 37 Nonmotile Pathogen, Meticillin resistant Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus A9763 A9763 Gi04260 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Human Pathogen, Medical 553592 36481 005095_GCAT 0 NZ_ACKK00000000 Draft 16.44x 41 2769 2661 32 454-FLX, Illumina USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 30 - 37 Nonmotile Pathogen, Meticillin resistant Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus A9781 A9781 Gi04261 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 553596 36483 005096_GCAT 0 NZ_ACKL00000000 Draft 18.71x 50 2822 0 32 Illumina, 454-FLX USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus E1410 E1410 Staphylococcus aureus subsp. aureus E1410 Gi04262 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 585153 34897 005097_GCAT 0 NZ_ACJU00000000 Draft 24.29x 56 2810 0 32 Illumina, 454-FLX USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Septicemia, Pneumonia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus M876 M876 Staphylococcus aureus subsp. aureus M876 Gi04263 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 585158 34899 005098_GCAT 0 NZ_ACJV00000000 Draft 24.08x 52 2762 0 32 Illumina, 454-FLX USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Septicemia, Pneumonia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus Mu50 Mu50 Staphylococcus aureus subsp. aureus Mu50 Gi04264 Genome incomplete Public Robert Koch Institut Medical, Human Pathogen 158878 34809 005099_GCAT 0 0 0 32 Germany Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus intermedius BACTERIAL Streptococcus intermedius JTH08 JTH08 Gi04265 Genome incomplete Public Juntendo Univ 591365 33443 005100_GCAT 0 0 0 0 Japan Mesophile gram+ Free living Pairs Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. MV-1 BACTERIAL Vibrio sp. MV-1 MV-1 Vibrio sp. HV10 Gi04266 Genome incomplete Public Univ of Edinburgh Environmental, Biotechnological 632142 34693 005101_GCAT 0 0 0 0 United Kingdom Facultative Nonsporulating Mesophile gram- Symbiotic Elysia rufescens None Marine, Host Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae BACTERIAL Endosymbiont of Sitophilus oryzae Sitophilus oryzae principal endosymbiont Bouriz Gi04267 Genome incomplete Public Univ of Valencia 2342 33539 005102_GCAT 9987 0 0 0 0 Spain Mesophile gram- Symbiotic Sitophilus oryzae Endosymbiont Bacteria Cyanobacteria Oscillatoriales Arthrospira Arthrospira platensis BACTERIAL Arthrospira platensis Paraca Paraca Arthrospira platensis Gi04268 Genome incomplete Public Univ of Applied Sciences Food industry, Dietary supplement 634502 34793 005103_GCAT 0 NZ_ACSK00000000 Draft 8x 1820 4997 0 44 Switzerland jfalquet@antenna.ch Facultative Spiral-shaped Mesophile gram- Free living None Fresh water Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis CI CI Gi04269 Genome incomplete Public Georg-August-Univ Goettingen Biothreat, Medical, Human Pathogen 637380 36309 005104_GCAT 0 0 0 0 Germany Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Anthrax Soil Motile Pathogen Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp. H0407_2.3jLac BACTERIAL Desulfovibrio sp. H0407_2.3jLac H0407_2.3jLac Gi04270 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 634995 33773 005105_GCAT 0 0 0 0 USA Obligate anaerobe Rod-shaped Sporulating Mesophile gram- Free living None Mud, Sea water, Fresh water, Animal intestinal microflora, Soil 37 Motile Sulfate reducer, Hydrogen sulfide gas release Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori NCTC 11639 NCTC 11639 Helicobacter pylori NCTC 11639 NCTC 11639 Gi04271 Genome incomplete Public GuiYang Univ Medical, Human Pathogen 637383 36525 005106_GCAT 0 0 0 38 China Homo sapiens Gastrointestinal tract Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Human stomach, Host 37 Motile Pathogen Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes 08-5923 08-5923 Listeria monocytogenes 08-5923 Gi04272 Genome incomplete Public National Microbiology Laboratory Animal Pathogen, Cattle Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 637381 36363 005107_GCAT 0 0 0 0 Canada Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Chains, Singles Listeriosis, Food poisoning Intestinal microflora, Fresh water, Food, Soil 30 - 37 Motile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis H37Rv H37Rv Gi04273 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 83332 37301 005108_GCAT 0 0 0 0 Sanger USA John Aquadro Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis Beijing/W BT1 Beijing/W BT1 Mycobacterium tuberculosis str. Beijing/W BT1 Gi04274 Genome incomplete Public Chinese Univ of Hong Kong Medical, Human Pathogen 634955 36417 005109_GCAT 0 0 0 0 Sanger China Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma hyorhinis BACTERIAL Mycoplasma hyorhinis ATCC 17981 ATCC 17981 ATCC 17981 Yes Gi04275 Genome incomplete Public CBER Medical 634996 36299 005110_GCAT 0 0 0 0 USA nasal cavity of pig Sus scrofa Airways Nasal Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Urogenital infection, Respiratory infection Host Nonmotile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma hyorhinis BACTERIAL Mycoplasma hyorhinis DBS 1050 DBS 1050 ATCC 29052 Yes Gi04276 Genome incomplete Public CBER Medical 634997 36301 005111_GCAT 0 0 0 0 USA Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Urogenital infection, Respiratory infection Host Nonmotile Pathogen Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis BACTERIAL Neisseria meningitidis alpha710 alpha710 Gi04277 Genome incomplete Public Bielefeld Univ Medical 630588 36319 005112_GCAT 0 0 0 0 Germany Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Septicemia, Meningitis Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis D106004 D106004 Gi04278 Genome incomplete Public State Key Laboratory Animal Pathogen, Medical, Human Pathogen, Biothreat 637382 36507 005113_GCAT 160633 0 0 0 0 Sanger China Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic and Pneumonic plague Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis D182038 D182038 Gi04279 Genome incomplete Public State Key Laboratory Animal Pathogen, Medical, Human Pathogen, Biothreat 637385 36545 005114_GCAT 0 0 0 0 Sanger China Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic and Pneumonic plague Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Z176003 Z176003 Gi04280 Genome incomplete Public State Key Laboratory Animal Pathogen, Medical, Human Pathogen, Biothreat 637386 36547 005115_GCAT 0 0 0 0 Sanger China Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic and Pneumonic plague Host Motile Pathogen Heterotroph Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Spirochaeta Spirochaeta sp. BACTERIAL Spirochaeta sp. Grapes Grapes Gi04281 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 28185 005116_GCAT 0 Awaiting DNA 0 0 0 USA Marine hot spring; USSR, Shiashkoten island Russia Shiashkoten island 48.826533 154.125478 Anaerobe Spiral-shaped Hyperthermophile gram- Free living None Marine, Hot spring 65 Motile Utilize carbohydrates Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Spirochaeta Spirochaeta sp. BACTERIAL Spirochaeta sp. Buddy Buddy Gi04282 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 28185 005117_GCAT 0 Awaiting DNA 0 0 0 USA Marine hot spring; USSR, Shiashkoten island Russia Shiashkoten island 48.826533 154.125478 Anaerobe Spiral-shaped Hyperthermophile gram- Free living None Marine, Hot spring 65 Motile Utilize carbohydrates Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Methylobacteriaceae Methylobacterium Methylobacterium extorquens BACTERIAL Methylobacterium extorquens AM1 AM1 Methylobacterium extorquens AM1 Gi04283 Genome incomplete Public Broad Institute Methanol production, Biotechnological 272630 37299 005118_GCAT 151046 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None 25 - 30 Motile Methylotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium cellulovorans BACTERIAL Clostridium cellulovorans 743B, ATCC 35296 743B, ATCC 35296 Clostridium cellulovorans 743B ATCC 35296 Yes Gi04284 Genome incomplete Public Mie Univ Bioenergy, Energy production, Biotechnological, Biofuels 573061 37295 005119_GCAT 16224 0 0 0 27 Japan cellulose digester ATCC 35296 Anaerobe Rod-shaped Sporulating Mesophile gram- Free living Pairs, Singles None Soil Nonmotile Cellulose degrader Chemoorganotroph Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori 83 83 Helicobacter pylori 83 Unknown Gi04286 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 585538 005121_GCAT 462 0 In progress 486924 Newbler/1.1.03.24 69.18X 77 1700 0 0 454 USA Homo sapiens Gastrointestinal tract Stomach Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Ulcer, Gastric inflammation Human stomach, Host 37 Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori 35A 35A Helicobacter pylori 35A Unknown Gi04290 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 585535 005125_GCAT 4655 0 In progress 0 0 0 454 USA Homo sapiens Gastrointestinal tract Stomach Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Human stomach, Host 37 Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Klebsiella Klebsiella variicola BACTERIAL Klebsiella variicola At-22 At-22 Gi04293 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 640131 37701 005128_GCAT 0 0 0 0 USA Mesophile gram- Free living Host, Rhizosphere-colonizing, Rhizosphere Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus 68-397 68-397 Staphylococcus aureus subsp. aureus 68-397 Gi04294 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 585146 34895 005129_GCAT 0 NZ_ACJT00000000 Draft 23.85x 71 2767 0 32 Illumina, 454-FLX USA Homo sapiens Airways Nasal Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Septicemia, Pneumonia Host 30 - 37 Nonmotile Pathogen, Meticillin resistant Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus 65-1322 65-1322 Staphylococcus aureus subsp. aureus 65-1322 Gi04295 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 585145 34893 005130_GCAT 0 NZ_ACJS00000000 19.91x 70 2777 0 32 454 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Septicemia, Pneumonia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus 55/2053 55/2053 Staphylococcus aureus subsp. aureus 55/2053 Gi04296 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 585143 34891 005131_GCAT 0 NZ_ACJR00000000 Draft 20.16x 94 2762 0 0 454 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 30 - 37 Nonmotile Pathogen, Meticillin resistant unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Nasopharyngeal and Fecal viriome from Human from Human during influenza and norovirus outbreaks Viral Metagenome from Human Nasopharyngeal and Fecal Samples Gm00170 Metagenome incomplete Public Osaka Univ Medical, Human Pathogen 408170 33495 005134_GCAT 0 0 0 0 Japan nasopharyngeal and fecal samples collected during seasonal influenza virus infections and norovirus outbreaks from 2005 to 2007 in Osaka, Japan 2005 to 2007 Japan nasopharyngeal and fecal samples collected during seasonal influenza virus infections and norovirus outbreaks from 2005 to 2007 in Osaka, Japan Homo sapiens Mesophile Host, Human fecal, Human nasopharyngeal microflora unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Freshwater microbial communities from Mesotrophic Lake from Mesotrophic Lake Freshwater Metagenome from Mesotrophic Lake Gm00171 Metagenome incomplete Public Univ Blaise Pascal Debroas D didier.debroas@bpclermont.fr 449393 34905 005135_GCAT 0 FI831481-FI846758 Complete pCC1FOS 0 0 0 France mesotrophic lake of Lac du Bourget, France France mesotrophic lake of Lac du Bourget, France 45.729678 5.869579 Mesophile Host unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Switchgrass-associated Rumen microbiome of Cow of Cow Gm00174 Metagenome incomplete Public DOE Joint Genome Institute DOE, Energy Biosciences Institute Rubin EM emrubin@lbl.gov Bioenergy, Energy production, Biotechnological 005138_GCAT 0 In progress 0 0 0 USA Switchgrass-associated Rumen microbiome of Cow USA Bos taurus Gastrointestinal tract Rumen None unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Rumen fluid microbiome of Cow of Cow Gm00175 Metagenome incomplete Public DOE Joint Genome Institute DOE, Energy Biosciences Institute Rubin EM emrubin@lbl.gov Bioenergy, Energy production, Biotechnological 005139_GCAT 0 In progress 0 0 0 USA Switchgrass-associated Rumen microbiome of Cow USA Bos taurus Gastrointestinal tract Rumen None unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine picoplanktonic community from Hawaii Ocean Times Series Station (HOT/ALOHA) from Hawaii Ocean Times Series Station (HOT/ALOHA) (metatranscriptome) Gm00176 Metagenome complete Public Penn State Univ Moore Foundation, NSF DeLong EF delong@mit.edu 2008-03-11 PNAS 105, 3805-10 Bioremediation, Environmental, Ecological, Biotechnological 408172 16339 005140_GCAT 0 Complete 128324 0 0 0 454-GS20 USA Seawater was collected at the HOT station ALOHA (22044′N, 15802′W), 75-m depth, on March 9, 2006, 03:30 a.m. local time March 9, 2006, 03:30 a.m. local time USA North Pacific Ocean at depths of 10m to 4000m at the Hawaii open-ocean time-series station 22.733333 -158.033333 -75 meters None Marine unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Saline water bacterioplankton communities from Sapelo Island GA, and Mono Lake CA from Sapelo Island GA, and Mono Lake CA Hypersaline lake microbial communiities Gm00177 Metagenome incomplete Public Univ of Georgia NSF Moran MA mmoran@uga.edu 2005-07-01 Appl Environ Microbiol. 71, 4121-6 Environmental 005141_GCAT 0 In progress Celera, Phrap 0 0 0 Sanger USA bacterioplankton communities of Sapelo Island, GA, and Mono Lake, CA 2002-2003 USA Halophile Hypersaline mats Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium aurimucosum BACTERIAL Corynebacterium aurimucosum CN-1, ATCC 700975 CN-1, ATCC 700975 Corynebacterium aurimucosum ATCC 700975 DSM 44827, ATCC 700975, CCUG 48176, CIP 107436 No Gc00991 Genome Complete and Published Public Bielefeld Univ Tauch A cauri 2009-04-24 Unpublished Medical 548476 37279 005142_GCAT 643692018 NC_012590 Complete Level 6: Finished 2790 2602 1 1 60 454-FLX, Sanger USA female urogenital tract Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host Nonmotile Chemoorganotroph Bacteria Cyanobacteria Pleurocapsales Chroococcidiopsis BACTERIAL Chroococcidiopsis sp. CCMEE 29 CCMEE 29 PCC 7203 Gi04297 Genome incomplete Public Arizona State Univ Touchman J j.touchman@asu.edu 155894 005143_GCAT 0 In progress 0 0 0 USA Mesophile gram- Free living None Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus Rock1-15 Rock1-15 Bacillus cereus Rock1-15 Gi04298 Genome incomplete Public Naval Medical Research Center Read TD Medical, Human Pathogen 526982 29675 005144_GCAT 643886123 NZ_ACMH00000000 Draft 16.9x 199 5746 5887 34 Sanger USA Soil in Rockville, Maryland USA Rockville, Maryland 39.083916 -77.156823 Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Chains Food poisoning Host, Soil Motile Pathogen unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil microbial communities from Am Rotbvll, Germany from Am Rotbvll, Germany Gm00178 Metagenome complete Public Penn State Univ, Univ of Vienna Schuster SC scs@bx.psu.edu 2008-06-25 PLoS ONE 3(6):e2527 Environmental SRR001321 005145_GCAT 0 SRR001321 Complete 314041 258411 0 0 USA sandy lawn in the environmentally protected area Am Rotbvll, Germany, Hessen January 2006 Germany Am Rotbvll, Germany, Hessen 49.926111 8.622667 010 cm None Soil unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil microbial communities from Pinus pinaster forest from Pinus pinaster forest from coastal sand dune in SW France Gm00179 Metagenome complete Public Univ de Lyon Marmeisse R roland.marmeisse@univ-lyon1.fr 2007-09-20 ISME Journal 1(7):632-42 Environmental 005146_GCAT 0 Complete pYESfi-URA3 0 0 0 France Soil from monospecific Pinus pinaster forest planted on a stabilized coastal sand dune in SouthWest France 27 blocks of soil underneath the fruit bodies of 25 different species of saprotrophic or symbiotic (ectomycorrhizal) basidiomycetes 18 November 2004 France Truc Vert site, SouthWest France 44.716667 -1.25 10 cm None Soil unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial communities from the Hawaiian Ocean Time-Series (HOT) from the Hawaiian Ocean Time-Series (HOT) surface waters Gm00180 Metagenome complete Public Univ of Georgia Moran MA mmoran@uga.edu 2009-02-03 Environ Microbiol Epub Environmental 005147_GCAT 0 Complete 151504 0 0 454 USA surface water at the Hawaiian Ocean Time-Series USA surface water at the Hawaiian Ocean Time-Series None Marine Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis A0248 A0248 Bacillus anthracis str. A0248 Gc00993 Genome Complete and Published Public Los Alamos National Laboratory, J. Craig Venter Institute Brettin T brettin@lanl.gov BAA 2009-05-01 Unpublished Animal Pathogen, Medical, Cattle Pathogen 592021 33543 005149_GCAT 643692005 NC_012659 Complete Level 6: Finished 5227 5709 1 2 35 USA human isolated from USAMRIID, Ohio USA human isolated from USAMRIID, Ohio Homo sapiens Facultative Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles, Chains Anthrax Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Erwinia Erwinia pyrifoliae BACTERIAL Erwinia pyrifoliae Ep1/96 Ep1/96 DSM 12163, CFBP 4172 Yes Gi04299 Genome incomplete Public Agroscope Changins-Wddenswil ACW 634499 37877 005150_GCAT 9834 0 0 0 52 Switzerland Facultative Rod-shaped Nonsporulating Mesophile gram- Free living None Motile Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax avenae BACTERIAL Acidovorax avenae avenae ATCC 19860 ATCC 19860 Acidovorax avenae subsp. avenae ATCC 19860 DSM 7227, ATCC 19860 Yes Gi04300 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Plant Pathogen, Agricultural 643561 37867 005151_GCAT 0 0 0 0 USA maize leaf Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Bacterial fruit blotch Host Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. UK4 BACTERIAL Pseudomonas sp. UK4 UK4 Gi04301 Genome incomplete Public Aalborg Univ Plant Pathogen, Agricultural 452680 37861 005152_GCAT 0 NZ_ACOQ00000000 Draft 42x 2971 5759 0 60 Denmark biofilm grown on glass slides submerged in a non-chlorinated drinking water reservoir Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae B33 B33 Vibrio cholerae B33 Gi04302 Genome incomplete Public Los Alamos National Laboratory Medical, Human Pathogen 417400 33557 005153_GCAT 0 NZ_ACHZ00000000 Draft 11x 17 4154 3871 47.5 USA "Beira, Mozambique in 2004" Rita Colwell (rcolwell@umiacs.umd.edu) 2004 Beira, Mozambique in 2004 -19.827271 34.836109 Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Food poisoning, Cholera Fresh water Motile Heterotroph Bacteria Cyanobacteria Pleurocapsales Chroococcidiopsis BACTERIAL Chroococcidiopsis sp. PCC 6712 PCC 6712 PCC 6712 Gi04303 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 118675 005154_GCAT 0 In progress 0 0 0 USA Mesophile gram- Free living None Bacteria Cyanobacteria Chroococcales Chamaesiphon Chamaesiphon subglobosus BACTERIAL Chamaesiphon subglobosus PCC 7430 PCC 7430 PCC 7430 Gi04304 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 217163 005155_GCAT 0 In progress 0 0 0 USA Mesophile gram- Free living None Bacteria Cyanobacteria Nostocales Nostocaceae Anabaena Anabaena cylindrica BACTERIAL Anabaena cylindrica PCC 7122 PCC 7122 ATCC 27899, PCC 7122 Gi04305 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 272123 005156_GCAT 0 In progress 0 0 0 USA Mesophile gram- Free living None Bacteria Cyanobacteria Nostocales Rivulariaceae Calothrix BACTERIAL Calothrix sp. PCC 7103 PCC 7103 ATCC 27905, PCC 7103 Gi04306 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 32057 005157_GCAT 0 Awaiting DNA 0 0 0 USA Herbarium specimen of Anacystis montana Aerobe Filament-shaped Mesophile gram- Free living Filaments None Motile Bacteria Cyanobacteria Nostocales Rivulariaceae Calothrix BACTERIAL Calothrix sp. PCC 7507 PCC 7507 PCC 7507 Gi04307 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 99598 005158_GCAT 0 Awaiting DNA 0 0 0 USA Mesophile gram- Free living None Bacteria Cyanobacteria Oscillatoriales Crinalium BACTERIAL Crinalium epipsammum PCC 9333 PCC 9333 PCC 9333 Gi04308 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 241425 005159_GCAT 0 Awaiting DNA 0 0 0 USA Mesophile gram- Free living None Bacteria Cyanobacteria Chroococcales Cyanothece BACTERIAL Cyanothece sp. PCC 7418 PCC 7418 PCC 7418 Gi04309 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 65093 005160_GCAT 0 In progress 0 0 0 USA Mesophile gram- Free living None Bacteria Cyanobacteria Chroococcales Dactylococcopsis Dactylococcopsis salina BACTERIAL Dactylococcopsis salina PCC 8305 PCC 8305 PCC 8305 Gi04310 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 13035 005161_GCAT 0 In progress 0 0 0 USA Mesophile gram- Free living None Bacteria Cyanobacteria Oscillatoriales Geitlerinema BACTERIAL Geitlerinema sp. PCC 7105 PCC 7105 PCC 7105 Gi04311 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 102127 005162_GCAT 0 In progress 0 0 0 USA Mesophile gram- Free living None Bacteria Cyanobacteria Oscillatoriales Leptolyngbya BACTERIAL Leptolyngbya sp. PCC 7104 PCC 7104 PCC 7104 Gi04312 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 118166 005163_GCAT 0 Awaiting DNA 0 0 0 USA Mesophile gram- Free living None Bacteria Cyanobacteria Oscillatoriales Leptolyngbya Leptolyngbya sp. PCC 7375 BACTERIAL Leptolyngbya sp. PCC 7375 PCC 7375 PCC 7375 Gi04313 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 102129 005164_GCAT 0 In progress 0 0 0 USA Mesophile gram- Free living None Bacteria Cyanobacteria Oscillatoriales Oscillatoria BACTERIAL Oscillatoria sp. PCC 7112 PCC 7112 PCC 7112 Gi04314 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA-CYANO, Tree of Life, GEBA 179408 005165_GCAT 0 Awaiting DNA 0 0 0 USA Mesophile gram- Free living None Bacteria Cyanobacteria Pleurocapsales Pleurocapsa Pleurocapsa minor BACTERIAL Pleurocapsa minor PCC 7327 PCC 7327 PCC 7327 Gi04315 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 118163 005166_GCAT 0 Awaiting DNA 0 0 0 USA Mesophile gram- Free living None Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus 132 132 Staphylococcus aureus subsp. aureus 132 Gi04316 Genome incomplete Public Lifesequencing S.L., Univ Publica de Navarra Medical, Human Pathogen 644279 37915 005167_GCAT 0 NZ_ACOT00000000 Draft 0 0 32 Mexico Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 30 - 37 Nonmotile Pathogen, Meticillin resistant Bacteria Cyanobacteria Oscillatoriales Pseudanabaena BACTERIAL Pseudanabaena sp. PCC 6802 PCC 6802 PCC 6802 Gi04317 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 118173 005168_GCAT 0 Awaiting DNA 0 0 0 USA Mesophile gram- Free living None Bacteria Cyanobacteria Oscillatoriales Pseudanabaena BACTERIAL Pseudanabaena sp. PCC 7367 PCC 7367 PCC 7367 Gi04318 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 82654 005169_GCAT 0 In progress 0 0 0 USA Mesophile gram- Free living None Bacteria Cyanobacteria Nostocales Scytonemataceae Scytonema Scytonema hofmanni BACTERIAL Scytonema hofmanni PCC 7110 PCC 7110 PCC 7110, ATCC 29171 Gi04319 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 128403 005170_GCAT 0 Awaiting DNA 0 0 0 USA Mesophile gram- Free living None Bacteria Cyanobacteria Pleurocapsales Stanieria Stanieria cyanosphaera BACTERIAL Stanieria cyanosphaera PCC 7437 PCC 7437 PCC 7437, ATCC 29371 Gi04320 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 111780 005171_GCAT 0 Awaiting DNA 0 0 40.7 USA Pool at botanical garden, Havana, Cuba Cuba Havana, Cuba 23.133333 -82.366667 Mesophile 30um 3-4um gram- Free living None Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12- MG1655, isolate CB3017 K12- MG1655, isolate CB3017 Gr00011 Gi04322 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Technology development 511145 005173_GCAT 0 In progress 0 0 50.8 Illumina USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora 37 Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12- MG1655, isolate CB4000 K12- MG1655, isolate CB4000 Gr00017 Gi04323 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Technology development 511145 005174_GCAT 0 In progress 0 0 50.8 Illumina USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora 37 Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12- MG1655, isolate CB2009 K12- MG1655, isolate CB2009 Gr00024 Gi04324 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Technology development 511145 005175_GCAT 0 In progress 0 0 50.8 Illumina USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora 37 Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12- MG1655, isolate CB2016 K12- MG1655, isolate CB2016 Gr00025 Gi04325 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Technology development 511145 005176_GCAT 0 In progress 0 0 50.8 Illumina USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora 37 Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12- MG1655, isolate CB3000 K12- MG1655, isolate CB3000 Gr00018 Gi04326 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Technology development 511145 005177_GCAT 0 In progress 0 0 50.8 Illumina USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs None Host, Human intestinal microflora 37 Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12- MG1655, isolate CB2004 K12- MG1655, isolate CB2004 Gr00019 Gi04327 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Technology development 511145 005178_GCAT 0 In progress 0 0 50.8 Illumina USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs None Host, Human intestinal microflora 37 Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12- MG1655, isolate CB3006 K12- MG1655, isolate CB3006 Gr00020 Gi04328 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Technology development 511145 005179_GCAT 0 In progress 0 0 50.8 Illumina USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora 37 Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12- MG1655, isolate CB3014 K12- MG1655, isolate CB3014 Gr00012 Gi04329 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 511145 005180_GCAT 0 In progress 0 0 50.8 Illumina USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora 37 Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12- MG1655, isolate CB2007 K12- MG1655, isolate CB2007 Gr00021 Gi04330 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 511145 005181_GCAT 0 In progress 0 0 50.8 Illumina USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs None Host, Human intestinal microflora 37 Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12- MG1655, isolate CB3019 K12- MG1655, isolate CB3019 Gr00014 Gi04331 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 511145 005182_GCAT 0 In progress 0 0 50.8 Illumina USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Human intestinal microflora, Host 37 Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12- MG1655, isolate CB3008 K12- MG1655, isolate CB3008 Gr00026 Gi04332 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 511145 005183_GCAT 0 In progress 0 0 50.8 Illumina USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora 37 Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12- MG1655, isolate CB3002 K12- MG1655, isolate CB3002 Gr00013 Gi04333 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 511145 005184_GCAT 0 In progress 0 0 50.8 Illumina USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora 37 Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12- MG1655, isolate CB2014 K12- MG1655, isolate CB2014 Gr00015 Gi04334 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 511145 005185_GCAT 0 In progress 0 0 50.8 Illumina USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora 37 Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12- MG1655, isolate CB2000 K12- MG1655, isolate CB2000 Gt00002 Ge00328 Transcriptome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 511145 005186_GCAT 0 In progress 0 0 50.8 Illumina USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora 37 Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12- MG1655, isolate CB1000 K12- MG1655, isolate CB1000 Gt00001 Ge00327 Transcriptome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 511145 005187_GCAT 0 In progress 0 0 50.8 Illumina USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora 37 Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12- MG1655, isolate Ind K12- MG1655, isolate Ind Gt00003 Ge00329 Transcriptome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 511145 005188_GCAT 0 In progress 0 0 50.8 Illumina USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora 37 Motile Non-Pathogen Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio vulgaris BACTERIAL Desulfovibrio vulgaris Hildenborough 3-10 Hildenborough 3-10 Desulfovibrio vulgaris str. Hildenborough Gr00027 Gi04338 Resequencing complete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 882 005189_GCAT 0 Complete 0 0 0 Illumina USA Obligate anaerobe Rod-shaped Sporulating Mesophile gram- Free living None Mud, Sea water, Fresh water, Animal intestinal microflora, Soil 37 Motile Hydrogen sulfide gas release, Sulfate reducer Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio vulgaris BACTERIAL Desulfovibrio vulgaris Hildenborough A-1 Hildenborough A-1 Desulfovibrio vulgaris str. Hildenborough Gr00028 Gi04339 Resequencing complete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 882 005190_GCAT 0 Complete 0 0 0 Illumina USA Obligate anaerobe Rod-shaped Sporulating Mesophile gram- Free living None Mud, Sea water, Fresh water, Animal intestinal microflora, Soil 37 Motile Sulfate reducer, Hydrogen sulfide gas release Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio vulgaris BACTERIAL Desulfovibrio vulgaris Hildenborough 9-11 Hildenborough 9-11 Desulfovibrio vulgaris str. Hildenborough Gr00029 Gi04340 Resequencing complete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 882 005191_GCAT 0 Complete 0 0 0 Illumina USA Obligate anaerobe Rod-shaped Sporulating Mesophile gram- Free living None Mud, Sea water, Fresh water, Animal intestinal microflora, Soil 37 Motile Sulfate reducer, Hydrogen sulfide gas release Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio vulgaris BACTERIAL Desulfovibrio vulgaris Hildenborough UA2 Hildenborough UA2 Desulfovibrio vulgaris str. Hildenborough Gr00022 Gi04341 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 882 005192_GCAT 0 0 0 0 Illumina USA Obligate anaerobe Rod-shaped Sporulating Mesophile gram- Free living None Mud, Sea water, Fresh water, Animal intestinal microflora, Soil 37 Motile Hydrogen sulfide gas release, Sulfate reducer Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli BL21(DE3) BL21(DE3) Escherichia coli BL21(DE3) ATCC BAA-1025 No Gc01082 Gi04342 Genome Complete and Published Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org ECBD 2009-07-09 Unpublished Recombinant protein expression, Biotechnological 469008 30681 005193_GCAT 0 NC_012947 Complete Level 6: Finished 4570 4440 1 1 50 USA Derivative of E. coli strain B Derivative of E. coli strain B Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora 37 Motile Non-Pathogen Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Gordonibacter Gordonibacter pamelaeae BACTERIAL Gordonibacter pamelaeae 7-10-1-bT 7-10-1-bT CCUG 55131, DSM 19378 Yes Gi04343 Genome incomplete Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 657308 39175 005194_GCAT 968 0 In progress 220000 20x 1202 3400 0 65 454-Titanium United Kingdom sigmoid colon biopsy from University-Hospital Schleswig-Holstein, Kiel, Germany 30th Nov 2006 Germany University-Hospital Schleswig-Holstein, Kiel, Germany 54.331723 10.142734 Homo sapiens Male 33 Crohn's disease patient Gastrointestinal tract Colon medication: AZA + Mutaflor + cortisone Obligate anaerobe Rod-shaped Nonsporulating Mesophile 500 nm 1um White gram+ Free living Human intestinal microflora, Host 40 Motile Eukaryota Nematoda Chromadorea Tylenchida Meloidogynidae Meloidogyne EUKARYAL Meloidogyne incognita Morelos Morelos Gc00998 Genome Complete and Published Public INRA, Genoscope Abad P pierre.abad@sophia.inra.fr 2007-09-22 Nature Biotech 26, 909-15 Plant Pathogen, Agricultural 6306 28837 005195_GCAT 0 CABB00000000 Complete Level 2: High-Quality Draft 5x 86000 0 0 Sanger France Symbiotic Parasitic Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia fergusonii BACTERIAL Escherichia fergusonii B253 B253 Gi04344 Genome incomplete Public Broad Institute Medical 550694 38067 005196_GCAT 0 In progress 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas BACTERIAL Pseudomonas stutzeri RCH2 RCH2 Gi04345 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural, Environmental, Bioremediation 316 005197_GCAT 0 Awaiting DNA 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Rice roots, Host, Soil Motile Non-Pathogen, Denitrifying Heterotroph Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio BACTERIAL Desulfovibrio termitidis Gi04346 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 42252 005198_GCAT 0 Awaiting DNA 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Rice roots, Host, Soil Motile Denitrifying, Non-Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella BACTERIAL Francisella tularensis TIGB-03 TIGB-03 Type A Gi04348 Genome incomplete Public Virginia Polytechnic Institute Crasta OR ocrasta@vbi.vt.edu http://ci.vbi.vt.edu/Crasta/ Biothreat, Medical, Human Pathogen 263 005200_GCAT 0 Draft 383078 48x 72 1892 0 32 454-FLX USA attenuated nitrosoguanidine-induced mutant strain of TI0902 Aerobe Rod-shaped Nonsporulating Mesophile Halophile gram- Free living Singles Tularemia Host, Fresh water Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium BACTERIAL Bifidobacterium breve 246B 246B Gi04350 Genome incomplete Public Univ of Parma Ventura M marco.ventura@unipr.it Medical 1685 005202_GCAT 0 Draft 2400 0 0 454-FLX Italy Human gut Homo sapiens Gastrointestinal tract Gut gut-derived, mucosal-adherent Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host, Human intestinal microflora 37 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium BACTERIAL Bifidobacterium bifidum 317B 317B Gi04351 Genome incomplete Public Univ of Parma Ventura M marco.ventura@unipr.it Medical 1681 005203_GCAT 0 Draft 2200 0 0 454-FLX Italy Human gut Homo sapiens Gastrointestinal tract Gut gut-derived, mucosal-adherent Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host, Human intestinal microflora 37 Nonmotile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis G3768 G3768 Gi04352 Genome incomplete Public Edgewood Chemical Biological Center, Univ of Florida Animal Pathogen, Medical, Human Pathogen, Biothreat 649715 38305 005204_GCAT 0 In progress 0 0 0 Sanger USA mountain voles from the Republic of Georgia Georgia Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic and Pneumonic plague Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis G1670 G1670 Gi04353 Genome incomplete Public Edgewood Chemical Biological Center, Univ of Florida Animal Pathogen, Medical, Human Pathogen, Biothreat 650055 38409 005205_GCAT 0 In progress 0 0 0 Sanger USA mountain voles from the Republic of Georgia Georgia Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic and Pneumonic plague Host Motile Pathogen Heterotroph Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis B/TZ1A828/OT B/TZ1A828/OT B Chlamydia trachomatis B/TW5/OT Gc01003 Genome Complete and Published Public Sanger Institute Wellcome Trust Seth-Smith HM hss@sanger.ac.uk http://www.sanger.ac.uk/Users/parkhill/ CTB 2009-05-11 BMC Genomics 10, 239 Animal Pathogen, Medical, Human Pathogen 634463 32653 005206_GCAT 0 NC_012687 Complete Level 6: Finished 1044 894 1 1 41.3 United Kingdom ocular isolate Tanzania Homo sapiens Eye Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Ocular infection Host Nonmotile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni jejuni M1 M1 Campylobacter jejuni subsp. jejuni M1 Gi04354 Genome incomplete Public Danish Technical Univ Animal Pathogen, Poultry Pathogen, Medical, Human Pathogen 645464 38041 005207_GCAT 0 0 0 0 Sanger Denmark Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Chains, Singles Food poisoning Host, Wastewater Motile Pathogen, Food poisoning, Auxotroph Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus subtilis BACTERIAL Bacillus subtilis natto BEST195 BEST195 Bacillus subtilis subsp. natto BEST195 Gi04355 Genome incomplete Public Keio Univ Biotechnological 645657 38027 005208_GCAT 0 0 0 0 Japan Facultative Rod-shaped Sporulating Mesophile gram+ Free living None Soil Motile Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium BACTERIAL Enterococcus faecium E1039 E1039 Enterococcus faecium E1039 Gi04356 Genome incomplete Public Univ Medical Center Utrecht Medical, Human Pathogen 645663 38013 005209_GCAT 0 0 0 0 Netherlands healthy human volunteer in 1998 in the Netherlands Dr. W. van Schaik (w.vanschaik@umcutrecht.nl) 1998 Netherlands Homo sapiens Healthy Facultative Coccus-shaped Mesophile Halotolerant gram+ Free living Chains, Pairs Opportunistic infection Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella abortus BACTERIAL Brucella abortus 2308 A 2308 A Brucella abortus str. 2308 A Gi04357 Genome incomplete Public Los Alamos National Laboratory Brettin T brettin@lanl.gov Biothreat, Medical, Mammal Pathogen, Human Pathogen 641140 37723 005210_GCAT 0 Draft 13x 6600 3072 57.2 Sanger USA Milk of American Jersey Cattle by Dr. John Buck in 1923 1923 USA Milk of American Jersey Cattle by Dr. John Buck in 1923 Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Spontaneous abortion Host 37 Nonmotile Pathogen, Intracellular pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus atrophaeus BACTERIAL Bacillus atrophaeus ATCC 9372 ATCC 9372 NBRC 13721, IFO 13721, ATCC 9372, DSM 675, NCDO 738, NCIB 8058, CIP 77.18 Gi04358 Genome incomplete Public Edgewood Chemical Biological Center Biotechnological 640707 37683 005211_GCAT 0 0 0 0 USA Facultative Rod-shaped Sporulating Mesophile gram+ Free living None Soil Motile Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus casseliflavus BACTERIAL Enterococcus casseliflavus EC20 EC20 Enterococcus casseliflavus EC20 Gi04359 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 565655 32935 005212_GCAT 0 NZ_ACAO00000000 Draft 16.49x 57 3392 0 42 454 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile Halotolerant gram+ Free living Chains, Pairs Nocosomial infection, Opportunistic infection Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia muridarum BACTERIAL Chlamydia muridarum Nigg Nigg Chlamydia muridarum Nigg Gi04360 Genome incomplete Public Univ of Maryland, IGS Animal Pathogen, Medical, Human Pathogen 243161 38159 005213_GCAT 0 NZ_ACOV00000000 Draft 45x 5 1070 0 40.3 454 USA Prof K. Ramsey Lab host: Homo sapiens HeLa 229 cells Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Respiratory infection, Bronchitis, Pharyngitis, Pneumonia Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia muridarum BACTERIAL Chlamydia muridarum Weiss Weiss Chlamydia muridarum Weiss Gi04361 Genome incomplete Public Univ of Maryland, IGS Human Pathogen, Animal Pathogen, Medical 647227 38161 005214_GCAT 0 NZ_ACOW00000000 Draft 45x 5 1070 0 40.3 454 USA Prof K. Ramsey Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Respiratory infection, Bronchitis, Pharyngitis, Pneumonia Host Nonmotile Pathogen Eukaryota Hexamitidae Giardia EUKARYAL Giardia lamblia GS (Assemblage B) GS (Assemblage B) M-H7 ATCC 50581 Gi04362 Genome complete Public Karolinska Institute Franzen O oscar.franzen@ki.se 5741 005215_GCAT 0 Complete 800000 MIRA 16x Glimmer, CRITICA 2931 12000 0 0 454 Sweden Human with giardiasis USA Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Flexibacteraceae Runella BACTERIAL Runella slithyformis LSU4, DSM 19594 LSU4, DSM 19594 NCIMB 11436, DSM 19594, LMG 11500, ATCC 29530 Yes Gi04364 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 106 005217_GCAT 0 In progress 0 0 0 USA Fresh water lake; USA, Louisiana, Baton Rouge USA USA, Louisiana, Baton Rouge 30.46788 -91.129604 Rod-shaped Pink gram- Free living None Nonmotile Bacteria Thermotogae Thermotogae (class) Thermotogales Thermotogaceae Thermotoga BACTERIAL Thermotoga thermarum LA3, DSM 5069 LA3, DSM 5069 DSM 5069 Yes Gi04365 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 119394 005218_GCAT 0 In progress 0 0 0 USA Continental solfataric spring; Africa, Djibouti, Lac Abbe Djibouti 11.162815 41.780548 Anaerobe Hyperthermophile gram- Free living None 80 Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Weeksella BACTERIAL Weeksella virosa CL345/78, DSM 16922 CL345/78, DSM 16922 ATCC 43766, CIP 103040, DSM 16922, CDC 9751, NCTC 11634 Yes Gi04366 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 1014 005219_GCAT 0 In progress 0 0 0 USA Human urine; USA, North Carolina Homo sapiens Urogenital tract Urine Urinary tract Rod-shaped Mesophile gram- Free living None Host Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XVII. Incertae Sedis Thermaerobacter BACTERIAL Thermaerobacter subterraneus C21, DSM 13965 C21, DSM 13965 DSM 13965, ATCC BAA-137 Yes Gi04367 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 175696 005220_GCAT 0 In progress 0 0 71 USA open drain run-off channel of a bore in the Great Artesian Basin of Australia USA 12054240 Obligate aerobe Rod-shaped Sporulating Thermophile 8.5 0.3um 2-10um gram+ Free living None Sediment 70 Heterotroph Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus plantarum BACTERIAL Lactobacillus plantarum JDM1 JDM1 Lactobacillus plantarum JDM1 Gc01008 Genome Complete and Published Public Shanghai Jiao Tong Univ Guo X microbiology@sjtu.edu.cn JDM1 2009-07-17 J. Bacteriology 191, 5020-1 Medical 644042 32969 005221_GCAT 0 NC_012984 Complete Level 6: Finished 236563 18.6x 3197 3029 1 2 44.6 Sanger, 454-GS20 China Chinese commercial LAB with several probiotic functions Homo sapiens Gastrointestinal tract Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Host Nonmotile Eukaryota Chordata Mammalia Primates Hominidae Homo EUKARYAL Homo sapiens Korean male Korean male Homo sapiens Gc01012 Genome Complete and Published Public Gachon Univ, KRIBB Kim SJ jasonsjkim@gachon.ac.kr 2009-06-24 Genome Research 456, 53-9 Medical 9606 005222_GCAT 0 Complete Level 2: High-Quality Draft 24600000 Velvet 0.7.27 29.95x 0 0 0 Illumina Korea male Yoruba from Ibadan, Nigeria Nigeria Ibadan, Nigeria 7.378841 3.895278 Homo sapiens Male Korean Blood Aerobe Mesophile 36 Male, African Eukaryota Arthropoda Branchiopoda Diplostraca Daphniidae Daphnia Daphnia carinata EUKARYAL Daphnia carinata Water flea Daphnia carinata Ge00330 EST complete Public East China Normal Univ Xu X xuxiaoqian@ecnu.cn 120202 005223_GCAT 0 Complete 3072 0 0 China Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Pichia Pichia pastoris EUKARYAL Pichia pastoris GS115 GS115 ATCC 20864 Gc01013 Genome Complete and Published Public Ghent Univ Callewaert N Nico.Callewaert@dmbr.vib-UGent.be http://bioinformatics.psb.ugent.be/genomes/view/Pichia-pastoris 2009-05-24 Nature Biotechnology 27, 561 - 566 Biotechnological, Protein production, Fermentation 644223 005224_GCAT 0 Complete Level 6: Finished 897197 20x EuGene 9300 5313 4 0 41.1 454 USA mutant derived from NRRL Y-11430 None Methylotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Klebsiella Klebsiella pneumoniae BACTERIAL Klebsiella pneumoniae NTUH-K2044 NTUH-K2044 Klebsiella pneumoniae NTUH-K2044 Gc01015 Genome Complete and Published Public National Yang-Ming Univ KP1 2009-05-15 J. Bacteriology 191, 4492-501 Animal Pathogen, Medical, Cattle Pathogen 484021 13306 005225_GCAT 277703 0 NC_012731 Complete Level 6: Finished 5248 5116 1 1 50 Taiwan patient with liver abscess and meningitis Homo sapiens Patient with liver abscess and meningitis Facultative Rod-shaped Mesophile gram- Free living Urinary tract infection, Bacteremia, Pneumonia Intestinal microflora, Mouth microflora, Host, Soil, Fresh water, Skin microflora Nonmotile Lactose fermenting, Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Frankiaceae Frankia Frankia sp. EuI1c BACTERIAL Frankia sp EuI1c EuI1c Gi04370 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Agricultural 298654 37913 005228_GCAT 11682 0 In progress 0 0 0 USA Aerobe Filament-shaped Sporulating Mesophile gram+ Symbiotic Mutualistic None Plant symbiont, Host, Soil Nonmotile Non-Pathogen, Nitrogen fixation Chemoorganotroph Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia hermsii BACTERIAL Borrelia hermsii DAH DAH Borrelia hermsii DAH Gi04371 Genome incomplete Public Univ of Minnesota Medical, Human Pathogen 314723 13404 005229_GCAT 0 0 0 0 USA Causes tick-borne relapsing fever Aerobe Spiral-shaped Mesophile gram- Free living Tick-borne relapsing fever Host Motile Pathogen Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina thermophila ARCHAEAL Methanosarcina thermophila TM-1, DSM 1825 TM-1, DSM 1825 DSM 1825, ATCC 43570, OCM 12, VKM B-1830 Yes Gi04372 Genome incomplete Public Goettingen Genomics Laboratory Biotechnological, Energy production, Carbon cycle 523844 13469 005230_GCAT 0 0 0 0 Germany Thermophilic digester sludge; USA Produces methane from methanol and acetate USA Anaerobe Coccus-shaped Nonsporulating Thermophile gram- Free living None Fresh water 50 Nonmotile Methanogen Lithotroph Bacteria Cyanobacteria Chroococcales Synechococcus BACTERIAL Synechococcus sp. Eum14 Eum14 Synechococcus sp. Eum14 Gi04374 Genome incomplete Public J. Craig Venter Institute Moore Foundation Marine Microbial Initiative (MMI), Environmental 221338 13558 005232_GCAT 0 0 0 0 USA Tropical Atlantic at a depth of 105 meters isolated by enrichment. Sargasso Sea 39.643333 -70.462 105 meters Facultative Coccus-shaped Mesophile gram- Free living None Marine Motile Photoautotroph, Photosynthetic Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Sulfitobacter Sulfitobacter sp. GAI-109 BACTERIAL Sulfitobacter sp. GAI-109 GAI-109 Sulfitobacter sp. GAI-109 Gi04375 Genome incomplete Public J. Craig Venter Institute Moore Foundation Marine Microbial Initiative (MMI), Environmental 314268 13560 005233_GCAT 0 0 0 0 Sanger USA surface seawater obtained off the coast of Georgia USA Coastal seawater collected off Georgia in December 1997 Aerobe Rod-shaped Mesophile gram- Free living None Surface water, Marine Motile Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacterales bacterium HTCC2177 BACTERIAL Rhodobacterales sp HTCC2177 HTCC2177 Rhodobacterales bacterium HTCC2177 HTCC2177 Gi04376 Genome incomplete Public J. Craig Venter Institute Moore Foundation Marine Microbial Initiative (MMI), Environmental 314258 13613 005234_GCAT 0 0 0 0 Sanger USA coastal area near Newport, Oregon at a depth of ten meters solated by plating on solid media USA Newport, Oregon 44.652348 -124.063185 10 meters Mesophile gram- Free living None Marine Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micromonosporaceae Salinispora Salinispora arenicola BACTERIAL Salinispora arenicola CNH-643, ATCC BAA-917 CNH-643, ATCC BAA-917 ATCC BAA-917, DSM 44819, CIP 108942, JCM 13856 Yes Gi04377 Genome incomplete Public DOE Joint Genome Institute DOE Biotechnological, Medical, Cancer treatment 391967 15700 005235_GCAT 0 0 0 0 Sanger USA Marine sediment, Bahamas USA Aerobe Filament-shaped Sporulating Mesophile gram+ Free living None Marine, Fresh water, Sediment Motile Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bartonellaceae Bartonella BACTERIAL Bartonella tribocorum Gi04378 Genome incomplete Public Max Planck Institute Medical, Rat Pathogen 85701 16098 005236_GCAT 0 0 0 0 Germany blood of wild rats Rat Blood Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Bartonellosis Host Motile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis CCDC5180 CCDC5180 Mycobacterium tuberculosis CCDC5180 Gi04379 Genome incomplete Public Beijing Genomics Institute Medical, Human Pathogen 443150 19583 005237_GCAT 0 0 0 0 Sanger China patient with secondary pulmonary tuberculosis Strain resistant to isoniazid, rifampicin, streptomycin and ethambutol. 2004 China Homo sapiens Airways Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis CCDC5079 CCDC5079 Mycobacterium tuberculosis CCDC5079 Gi04380 Genome incomplete Public Beijing Genomics Institute Medical, Human Pathogen 443149 19585 005238_GCAT 0 0 0 0 Sanger China Strain is susceptible to isoniazid, rifampicin, streptomycin and ethambutol China Homo sapiens Airways Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma mycoides BACTERIAL Mycoplasma mycoides mycoides SC small colony variant Gladysdale Gi04381 Genome incomplete Public J. Craig Venter Institute JCVI Medical, Animal Pathogen 44101 27713 005239_GCAT 0 0 0 0 USA Anaerobe Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Pneumonia, Arthritis, Mammitis Host 37 Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces sp. ACTE BACTERIAL Streptomyces sp. ACTE ACTE Gi04382 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 647653 38225 005240_GCAT 0 0 0 72 USA Aerobe Filament-shaped Sporulating Mesophile gram+ Free living None Soil Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae SP14-BS292 SP14-BS292 14 Streptococcus pneumoniae SP14-BS292 Gi04384 Genome incomplete Public West Penn Allegheny Health System CGSSp14BS69 Medical, Human Pathogen 497962 28511 005242_GCAT 0 0 0 39.6 USA Low-passage isolate from the nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh USA Nasopharynx of a child who came down with pneumonia after participating in a pneumococcal vaccine trial at the Children's Hospital of Pittsburgh Homo sapiens child Patient with pneumonia Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Host, Nasopharyngeal microflora Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica sv Paratyphi B ATCC BAA-1584 ATCC BAA-1584 Paratyphi B Salmonella enterica subsp. enterica serovar Paratyphi B str. ATCC BAA-1584 ATCC BAA-1584 Gi04385 Genome incomplete Public Washington Univ WASHU webmaster@genome.wustl.edu Medical, Human Pathogen 523830 28777 005243_GCAT 0 0 0 0 USA Homo sapiens Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Salmonellosis, Food poisoning, Gastroenteritis Fresh water, Soil, Host, Food Motile Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12 DH1, ATCC 33849 K12 DH1, ATCC 33849 ATCC 33849, DSM 4235 Gi04386 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Bioenergy 536056 005244_GCAT 0 0 0 0 USA derivative of strain MM294 except the mutated alleles recA1 and gyrA96 Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Human intestinal microflora, Host 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli BW2952 BW2952 Gc01022 Genome Complete and Published Public Nankai Univ Wang L. BWG 2009-06-04 J. Bacteriology 12, 4025-4029 Medical 595496 33775 005252_GCAT 0 NC_012759 Complete Level 6: Finished 4578 4267 1 0 50.8 Illumina China MC4100 derivative containing a malG-lacZ fusion Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Human intestinal microflora, Host 37 Motile Non-Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. D20 BACTERIAL Bacteroides sp. D20 D20 BEI Shipping Unknown Gi04388 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 585543 38355 005246_GCAT 969 0 DNA Received 0 0 0 USA Human gastrointestinal tract Homo sapiens Gastrointestinal tract Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Human intestinal microflora, Host Nonmotile Chemoorganotroph Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter canadensis BACTERIAL Helicobacter canadensis MIT 98-5491, ATCC 700968 MIT 98-5491, ATCC 700968 Helicobacter canadensis NCTC 13241 NCTC 13241, ATCC 700968, LCDC 16143 Yes Gc01037 Gi04389 Genome Complete and Published Public BCM-HGSC Pallen MJ m.pallen@bham.ac.uk 2009-06-19 J. Bacteriology 191, 5566-7 Medical 537970 30719 005247_GCAT 0 NZ_ACSF00000000 Complete Level 6: Finished Newbler 1624 1557 1 0 34 Illumina, 454 USA Human with diarrhea 1994-1999 Canada Human with diarrhea Homo sapiens Patients with diarrhea Gastrointestinal tract Feces Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastroenteritis Host Motile Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas campestris BACTERIAL Xanthomonas oryzae pv. armoraciae NCPPB702 NCPPB702 pv. vasculorum Xanthomonas campestris pv. vasculorum NCPPB702 Gi04390 Genome incomplete Public The Sainsbury Laboratory Plant Pathogen, Agricultural 559736 31213 005248_GCAT 0 NZ_ACHS00000000 Draft 488 5425 0 56 Sanger USA Aerobe Rod-shaped Mesophile gram- Free living Bacterial streak disease Host Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas campestris BACTERIAL Xanthomonas campestris pv. musacearum NCPPB4381 NCPPB4381 pv. musacearum Xanthomonas campestris pv. musacearum NCPPB4381 Gi04391 Genome incomplete Public The Sainsbury Laboratory Plant Pathogen, Agricultural 559737 31215 005249_GCAT 0 NZ_ACHT00000000 Draft Velvet 100x 751 4782 0 61 Illumina USA Aerobe Rod-shaped Mesophile gram- Free living Bacterial streak disease Host Motile Pathogen Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis BACTERIAL Neisseria meningitidis N1568 N1568 Gi04393 Genome incomplete Public Bielefeld Univ Medical 630588 31305 005250_GCAT 0 0 0 0 USA Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Meningitis, Septicemia Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cellulosilyticus BACTERIAL Bacillus cellulosilyticus N-4, DSM 2522 N-4, DSM 2522 ATCC 21833, DSM 2522, JCM 9156, FERM P-1141 Yes Gi04394 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 649639 38423 005251_GCAT 0 In progress 0 0 0 USA Soil Facultative Rod-shaped Sporulating Mesophile gram+ Free living None Soil 37 Motile Alkaliphile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella veroralis BACTERIAL Prevotella veroralis F0319 F0319 BEI HM-92 Unknown Gi04396 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 649761 38331 005254_GCAT 973 0 ACVA00000000, NZ_ACVA00000000 Draft 36.3x 98 2986 0 46 454 USA Human gingival crevices Dewhirst, Izard Homo sapiens Oral Gingival crevices Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Oral infection, Periodontal infection Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella oris BACTERIAL Prevotella oris F0302 F0302 BEI HM-93 Unknown Gi04397 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 649760 38329 005255_GCAT 971 0 ACUZ00000000, NZ_ACUZ00000000 Draft 18.8x 159 3213 0 43 454 USA Dewhirst, Izard Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Oral infection, Periodontal infection Human oral microflora, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. oral taxon 848 BACTERIAL Actinomyces sp. oral taxon 848 F0332 F0332 Actinomyces sp. oral taxon 848 str. F0332 BEI HM-90 Unknown Gi04398 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 649743 38311 005256_GCAT 972 HOMD: tax_848 0 NZ_ACUY00000000, ACUY00000000 Draft 28.7x 73 2519 0 64 454 USA Dewhirst, Izard Homo sapiens Oral Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Septicemia, Eye infection, Lung infection, Oral abscesses Human intestinal microflora, Human oral microflora, Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Pestoides G Pestoides G Gi04399 Genome incomplete Public Edgewood Chemical Biological Center, Univ of Florida Animal Pathogen, Medical, Human Pathogen, Biothreat 649716 38307 005257_GCAT 0 In progress 0 0 0 Sanger USA mountain voles from the Republic of Georgia Georgia Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic and Pneumonic plague Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis tularensis NE061598 NE061598 Gi04400 Genome incomplete Public Univ of Nebraska Biothreat, Medical, Human Pathogen 510831 38289 005258_GCAT 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile Halophile gram- Free living Singles Tularemia Host, Fresh water Nonmotile Pathogen Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella sp. F5/99 BACTERIAL Brucella sp. F5/99 F5/99 Gi04401 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biothreat, Medical, Mammal Pathogen, Human Pathogen 437701 33767 005259_GCAT 0 NZ_ACFF00000000 Draft 27.78x 85 3336 0 56 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Brucellosis Host 37 Nonmotile Intracellular pathogen, Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium carboxidivorans BACTERIAL Clostridium carboxidivorans P7 P7 Clostridium carboxidivorans P7 ATCC BAA-624, DSM 15243 Yes Gi04402 Genome incomplete Public Mississippi State Univ Hemme CL hemmecl@ou.edu Biotechnological 536227 29495 005260_GCAT 0 NZ_ACVI00000000 Draft 252 5592 5517 29 USA agricultural settling lagoon at Oklahoma State University USA agricultural settling lagoon at Oklahoma State University 36.123175 -97.069644 Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles None 37 - 40 Motile Acetogenic, Solvent producer Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas savastanoi BACTERIAL Pseudomonas syringae R4a R4a glycinea Pseudomonas syringae pv. glycinea str. R4a Gi04403 Genome incomplete Public Univ of North Carolina at Chapel Hill Plant Pathogen, Agricultural 629257 33197 005261_GCAT 0 0 0 58 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plant rot Plants Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae BACTERIAL Pseudomonas syringae DSM 50255 DSM 50255 atrofaciens Pseudomonas syringae pv. atrofaciens str. DSM 50255 NRRL B-826, ICPB PA 13, DSM 60116, ATCC 9004, DSM 50255, NCPPB 1868 Gi04404 Genome incomplete Public Univ of North Carolina at Chapel Hill Plant Pathogen, Agricultural 629269 33223 005262_GCAT 0 0 0 58 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plant rot Plants Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae BACTERIAL Pseudomonas syringae Cit 7 Cit 7 Pseudomonas syringae Cit 7 Gi04405 Genome incomplete Public Univ of North Carolina at Chapel Hill Plant Pathogen, Agricultural 629264 33213 005263_GCAT 0 0 0 58 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plant rot Plants Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae BACTERIAL Pseudomonas syringae A10853 A10853 aceris Pseudomonas syringae pv. aceris str. A10853 Gi04406 Genome incomplete Public Univ of North Carolina at Chapel Hill Plant Pathogen, Agricultural 629270 33225 005264_GCAT 0 0 0 58 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plant rot Plants Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae BACTERIAL Pseudomonas syringae 303091 303091 actinidiae Pseudomonas syringae pv. actinidiae str. 303091 Gi04407 Genome incomplete Public Univ of North Carolina at Chapel Hill Plant Pathogen, Agricultural 629266 33217 005265_GCAT 0 0 0 58 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plant rot Plants Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali BACTERIAL Pseudomonas syringae 0893_23 0893_23 aesculi Pseudomonas syringae pv. aesculi str. 0893_23 Gi04408 Genome incomplete Public Univ of North Carolina at Chapel Hill Plant Pathogen, Agricultural 629258 33201 005266_GCAT 0 0 0 58 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plant rot Plants Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae BACTERIAL Pseudomonas syringae DSM 50252 DSM 50252 aptata Pseudomonas syringae pv. aptata str. DSM 50252 ATCC 10205, DSM 50252, DSM 60113 Gi04409 Genome incomplete Public Univ of North Carolina at Chapel Hill Plant Pathogen, Agricultural 629268 33221 005267_GCAT 0 0 0 58 USA sugar beet Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plant rot Plants Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali BACTERIAL Pseudomonas syringae 107 107 lachrymans Pseudomonas syringae pv. lachrymans str. 107 Gi04410 Genome incomplete Public Univ of North Carolina at Chapel Hill Plant Pathogen, Agricultural 629260 33205 005268_GCAT 0 0 0 58 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plant rot Plants Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 BACTERIAL Pseudomonas syringae ES4326 ES4326 maculicola Pseudomonas syringae pv. maculicola str. ES4326 Gi04411 Genome incomplete Public Univ of North Carolina at Chapel Hill Plant Pathogen, Agricultural 629265 33215 005269_GCAT 0 0 0 58 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plant rot Plants Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali BACTERIAL Pseudomonas syringae 301020 301020 mori Pseudomonas syringae pv. mori str. 301020 Gi04412 Genome incomplete Public Univ of North Carolina at Chapel Hill Plant Pathogen, Agricultural 629261 33207 005270_GCAT 0 0 0 58 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plant rot Plants Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali BACTERIAL Pseudomonas syringae 19322 19322 morsprunorum Pseudomonas syringae pv. morsprunorum str 19322 Gi04413 Genome incomplete Public Univ of North Carolina at Chapel Hill Plant Pathogen, Agricultural 629259 33203 005271_GCAT 0 0 0 58 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plant rot Plants Motile Pathogen Heterotroph Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter BACTERIAL Campylobacter jejuni 1336 1336 Gi04415 Genome incomplete Public Univ of Liverpool Medical 197 33777 005273_GCAT 11258 0 In progress 0 0 0 United Kingdom Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Chains, Singles Food poisoning Wastewater Motile Pathogen, Food poisoning Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter BACTERIAL Campylobacter jejuni 1336 1336 Gi04416 Genome incomplete Public Univ of Liverpool Medical 197 33821 005274_GCAT 0 0 0 0 United Kingdom Microaerophilic Spiral-shaped Nonsporulating Mesophile gram- Free living Singles, Chains Food poisoning Wastewater Motile Pathogen, Food poisoning Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae Canada MDR_19A Canada MDR_19A Streptococcus pneumoniae str. Canada MDR_19A Gi04417 Genome incomplete Public Ontario Agency for Health Protection and Promotion Medical, Human Pathogen 637987 33805 005275_GCAT 0 0 0 0 Canada Homo sapiens Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Nasopharyngeal microflora, Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae Canada MDR_19F Canada MDR_19F Streptococcus pneumoniae str. Canada MDR_19F Gi04418 Genome incomplete Public Ontario Agency for Health Protection and Promotion Medical, Human Pathogen 637988 33807 005276_GCAT 0 0 0 0 Canada Homo sapiens Airways Nasopharynx Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Pneumonia Nasopharyngeal microflora, Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli OP50 OP50 Escherichia coli OP50 OP50 Gi04419 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Biotechnological, Bioenergy 637912 34109 005277_GCAT 0 0 0 0 USA routinely used in the propagation of C. elegans Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Human intestinal microflora, Host 37 Motile Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella melitensis BACTERIAL Brucella melitensis 16M 16M Gi04420 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Animal Pathogen, Medical, Human Pathogen, Biothreat 224914 34747 005278_GCAT 136366 0 0 0 0 USA Infected goat Infected goat Aerobe Nonsporulating Mesophile gram- Free living Brucellosis Host Nonmotile Facultative intracellular, Pathogen Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria BACTERIAL Listeria monocytogenes 08-5578 08-5578 Listeria monocytogenes 08-5578 Gi04421 Genome incomplete Public National Microbiology Laboratory Animal Pathogen, Cattle Pathogen, Swine Pathogen, Medical, Poultry Pathogen, Human Pathogen 1639 36361 005279_GCAT 0 0 0 0 Canada Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles, Chains Food poisoning, Listeriosis Food, Soil, Fresh water, Intestinal microflora 30 - 37 Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis T8 T8 Enterococcus faecalis T8 Gi04423 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 565639 37777 005281_GCAT 0 NZ_ACOC00000000 Draft 25.01x 115 2985 0 37 454 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Urinary infection, Bacteremia, Endocarditis Host Nonmotile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium dentium BACTERIAL Bifidobacterium dentium JCVIHMP022 JCVIHMP022 Bifidobacterium dentium JCVIHMP022 Unknown Gi04424 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 553191 31395 005282_GCAT 9003 0 In progress 0 0 0 USA Homo sapiens Gastrointestinal tract Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Host Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium sundsvallense DSM 44613 DSM 44613 Corynebacterium sundsvallense CIP 105936, LMG 19057, CCUG 36622, DSM 44613 Yes Gi04426 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 161902 005284_GCAT 309 0 In progress 0 0 59 Illumina, 454-FLX USA Human vagina from a 46-year-old woman in Sundsvall Sweden DSM 1996 Sweden 62.390836 17.306916 Homo sapiens Female 46 year old Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host Nonmotile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces BACTERIAL Actinomyces cardiffensis F0333 F0333 Unknown Gi04427 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 181487 005285_GCAT 9004 0 0 0 0 USA Human oral United Kingdom Homo sapiens Oral Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. BACTERIAL Actinomyces sp. F0338 F0338 Unknown Gi04428 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 29317 005286_GCAT 9005 HOMD: tax_178 0 0 0 0 USA Human oral Homo sapiens Oral Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. BACTERIAL Actinomyces sp. F0310 F0310 BEI HM-53 Unknown Gi04429 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 29317 005287_GCAT 9006 HOMD: tax_180 0 0 0 0 USA Human oral BEI Homo sapiens Oral Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 1_1_14 BACTERIAL Bacteroides sp. 1_1_14 1_1_14 BEI Shipping Unknown Gi04430 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 469585 38765 005288_GCAT 9007 0 In progress 0 0 0 Sanger, 454 USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Mesophile Free living Host, Human intestinal microflora Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 20_3 BACTERIAL Bacteroides sp. 20_3 20_3 BEI Shipping Unknown Gi04431 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 469591 38767 005289_GCAT 9008 0 In progress 0 0 0 Sanger, 454 USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Mesophile Free living Host, Human intestinal microflora Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 3_1_13 BACTERIAL Bacteroides sp. 3_1_13 3_1_13 BEI Shipping Unknown Gi04432 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 457389 38769 005290_GCAT 9009 0 In progress 0 0 0 454, Sanger USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Mesophile Free living Host, Human intestinal microflora Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 3_1_23 BACTERIAL Bacteroides sp. 3_1_23 3_1_23 BEI Shipping Unknown Gi04433 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 457390 38771 005291_GCAT 9010 0 In progress 0 0 0 Sanger, 454 USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Mesophile Free living Human intestinal microflora, Host Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 3_1_40A BACTERIAL Bacteroides sp. 3_1_40A 3_1_40A BEI Shipping Unknown Gi04434 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 469593 38773 005292_GCAT 9011 0 In progress 0 0 0 Sanger, 454 USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Mesophile Free living Human intestinal microflora, Host Bacteria BACTERIAL Bacteroidetes sp. F0290 F0290 BEI HM-52 Unknown Gi04435 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Human Microbiome Project (HMP), Medical 976 005293_GCAT 9012 HOMD: tax_272 0 Awaiting DNA 0 0 0 Sanger, 454 USA BEI Homo sapiens Oral Anaerobe Rod-shaped Mesophile gram- Free living Human intestinal microflora, Host Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae Bulleidia BACTERIAL Bulleidia extructa W1219, ATCC BAA-170 W1219, ATCC BAA-170 ATCC BAA-170, CIP 108362, DSM 13220 Yes Gi04436 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 118748 005294_GCAT 9013 HOMD: tax_603 0 In progress 0 0 0 Sanger, 454 USA Dewhirst Homo sapiens Oral Mesophile Free living Host, Human intestinal microflora Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Leptotrichia Leptotrichia goodfellowii BACTERIAL Leptotrichia goodfellowii D28 D28 BEI Shipping Unknown Gi04437 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 564663 38775 005295_GCAT 9014 0 In progress 0 0 0 USA Human oral isolate Emma Allen-Vercoe, U. Guelph, Canada Human oral isolate Homo sapiens Oral Anaerobe Rod-shaped Mesophile gram- Free living Chains, Filaments Oral microflora, Human oral microflora, Host Nonmotile Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Leptotrichia BACTERIAL Leptotrichia wadei F0279 F0279 BEI HM-14 Unknown Gi04438 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 157687 005296_GCAT 9015 HOMD: tax_222 0 In progress 0 0 0 USA Human oral isolate Human oral isolate Homo sapiens Oral Anaerobe Rod-shaped Mesophile gram- Free living Chains, Filaments Human oral microflora, Oral microflora, Host Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria sp. oral taxon 014 BACTERIAL Neisseria sp. F0314 F0314 Neisseria sp. oral taxon 014 str. F0314 BEI HM-91 Unknown Gi04439 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 641149 005297_GCAT 9016 0 DNA Received 0 0 0 USA Izard, Dewhirst Homo sapiens Oral Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Parascardovia Parascardovia denticolens BACTERIAL Parascardovia denticolens F0305 F0305 Unknown Gi04440 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 641144 SRS003106 005298_GCAT 9017 0 DNA Received 0 0 0 USA Izard, Dewhirst Homo sapiens Oral Mesophile gram+ Free living Host Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella amnii CRIS 21A-A CRIS 21A-A BEI HM-138 Unknown Gi04441 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 419005 005299_GCAT 9018 0 In progress 0 0 0 USA Sharon Hillier Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella timonensis CRIS 5C-B1 CRIS 5C-B1 BEI HM-136 Unknown Gi04442 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 386414 005300_GCAT 9019 0 In progress 0 0 0 USA Sharon Hillier Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Simonsiella Simonsiella muelleri BACTERIAL Simonsiella muelleri ATCC 29453 ATCC 29453 ATCC 29453, ICPB 3636 Yes Gi04444 Gi04443 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 641147 SRS003102 005301_GCAT 9021 0 DNA Received 0 0 0 USA Izard, Dewhirst Homo sapiens Oral Mesophile gram+ Free living Host Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Scardovia BACTERIAL Scardovia inopinata F0304 F0304 Unknown Gi04445 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 78259 005302_GCAT 9020 0 DNA Received 0 0 0 USA Izard, Dewhirst Homo sapiens Oral Mesophile gram+ Free living Host Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae Erysipelotrichaceae bacterium 2_2_44A BACTERIAL Erysipelotrichaceae sp. 2_2_44A 2_2_44A Erysipelotrichaceae bacterium 2_2_44A BEI Shipping Unknown Gi04446 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 457422 SRS002826 005303_GCAT 9022 0 In progress 0 0 0 USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Mesophile gram+ Free living Host Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa PA14 PA14 Gi04784 Genome incomplete Public Broad Institute Broad 652611 38507 005690_GCAT 0 Incomplete 0 0 0 USA Roger Smith of the Broad Institutes Microbial Genetics Platform Mesophile Free living Bacteria Cyanobacteria Oscillatoriales Leptolyngbya BACTERIAL Leptolyngbya sp. PCC 7376 PCC 7376 PCC 7376, ATCC 29171 Gi04448 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 111781 005305_GCAT 0 In progress 0 0 44.4 USA Crystal Cave (limestone), Bermuda 1971 USA 32.349568 -64.713955 Aerobe Mesophile gram- Free living None Nonmotile Chemoheterotroph Bacteria Cyanobacteria Oscillatoriales Oscillatoria BACTERIAL Oscillatoria sp. PCC 6407 PCC 6407 ATCC 27906., PCC 6407 Gi04449 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 402777 005306_GCAT 0 In progress 0 0 45.4 USA fresh water, California 1964 USA Anaerobe Mesophile Free living None Fresh water Motile Nitrogen fixation Photoheterotroph Bacteria Cyanobacteria Nostocales Microchaetaceae BACTERIAL Microchaete sp. PCC 7126 PCC 7126 PCC 7126 Gi04450 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 188910 005307_GCAT 0 In progress 0 0 45.4 USA freshwater aquarium Botany Department, University of Berkeley, California USA Aerobe Mesophile Free living None Fresh water Motile Nitrogen fixation Photoheterotroph Archaea Euryarchaeota Aciduliprofundum Aciduliprofundum boonei ARCHAEAL Aciduliprofundum boonei T469 T469 Aciduliprofundum boonei T469 Gi04451 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Environmental 439481 38403 005308_GCAT 161417 0 0 0 39 USA Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge depth 3650m Mariner Vent field -22.16889 -176.60028 1920 meters Facultative Coccus-shaped Thermophile gram- Free living None Hydrothermal vent, Deep sea, Marine 70 Motile Acidophile Chemolithoautotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Streptomycetaceae Streptomyces Streptomyces sp. ACT-1 BACTERIAL Streptomyces sp. ACT-1 ACT-1 Gi04452 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 649189 38279 005309_GCAT 0 0 0 72 USA Aerobe Filament-shaped Sporulating Mesophile gram+ Free living None Soil Nonmotile Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Ochrobactrum Ochrobactrum intermedium BACTERIAL Ochrobactrum intermedium LMG 3301 (CNS 2-75) LMG 3301 (CNS 2-75) Yes Gi04453 Genome incomplete Public Los Alamos National Laboratory NIH Tsolis R rmtsolis@ucdavis.edu Medical, Human Pathogen 641118 37725 005310_GCAT 0 NZ_ACQA00000000 Draft 5x Sanger, 25x 454 4 4725 4516 57 Sanger, 454 USA Human blood Renee Tsolis (rmtsolis@ucdavis.edu Homo sapiens Blood Aerobe Rod-shaped Mesophile gram- Free living Singles Meningitis Soil, Host, Sludge Motile Pathogen Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma conjunctivae BACTERIAL Mycoplasma conjunctivae HRC/581 HRC/581 Mycoplasma conjunctivae HRC/581 NCTC10147 Yes Gc01035 Genome Complete and Published Public , Swiss Institute of Bioinformatics Falquet L Laurent.Falquet@isb-sib.ch MCJ 2009-06-17 BMC Bioinformatics 10, S7 Human Pathogen, Medical, Animal Pathogen 572263 32285 005311_GCAT 0 NC_012806 Complete Level 6: Finished 2-12Kb, 32Kb 263163 AMOS Glimmer 3.02 846 694 1 0 28 Sanger, 454-FLX USA Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Arthritis Host 37 Nonmotile Pathogen Eukaryota Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Aspergillus EUKARYAL Aspergillus niger 11414 11414 Aspergillus niger Gr00016 Gi04454 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Fermentation, Biotechnological 5061 005312_GCAT 0 Awaiting DNA 0 0 0 Sanger USA Filament-shaped None Bacteria Firmicutes Bacilli Lactobacillales Leuconostocaceae Oenococcus Oenococcus oeni BACTERIAL Oenococcus oeni AWRIB429 AWRIB429 Gi04457 Genome incomplete Public AWRI Biotechnological, Food industry 655225 38663 005315_GCAT 0 0 0 0 Australia ne of the commercial malolactic bacteria strains and is used for secondary fermentation in wines. Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living None Marsh Nonmotile Eukaryota Chordata Actinopterygii Cyprinodontiformes Nothobranchiidae Nothobranchius EUKARYAL Nothobranchius furzeri MZM-0403 MZM-0403 Gi04461 Genome incomplete Public Leibniz Institute 105023 33315 005319_GCAT 0 ACCZ00000000 Draft 0 0 0 Germany Eukaryota Chordata Actinopterygii Cyprinodontiformes Nothobranchiidae Nothobranchius EUKARYAL Nothobranchius kuhntae Gi04462 Genome incomplete Public Leibniz Institute 321403 33401 005320_GCAT 0 ACDA00000000 Draft 0 0 0 Germany Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Pichia Pichia pastoris EUKARYAL Pichia pastoris DSMZ 70382 DSMZ 70382 Yes Gi04464 Genome incomplete Public Institute for Applied Microbiology Mattanovich D Biotechnological, Protein production, Fermentation 638632 36683 005322_GCAT 0 CABH00000000 Draft 22x 9400 5450 0 Illumina, 454-FLX Austria None Methylotroph Eukaryota Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum EUKARYAL Schistosoma japonicum Anhui Anhui Schistosoma japonicum Gi04465 Genome incomplete Public Chinese National Human Genome Center at Shanghai 6182 34885 005323_GCAT 0 CABF00000000 Draft 0 0 0 China China:Anhui province China snail Eukaryota Ascomycota Saccharomycetes Saccharomycetales Candida Candida tenuis EUKARYAL Candida tenuis ATCC 10573 ATCC 10573 ATCC 10573 Gi04860 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 590646 33673 005766_GCAT 0 In progress 0 0 0 Sanger USA Candidemia Pathogen Eukaryota Streptophyta Malpighiales Euphorbiaceae Jatropha EUKARYAL Jatropha curcas Jatropha curcas Gi04471 Genome incomplete Public The Energy and Resources Institute Agricultural, Biotechnological, Biofuels 180498 38219 005329_GCAT 0 0 0 0 Eukaryota Streptophyta Malpighiales Euphorbiaceae Jatropha EUKARYAL Jatropha curcas JcMD16 JcMD16 Jatropha curcas Gi04472 Genome incomplete Public Temasek Life Sciences Lab Agricultural, Biotechnological, Biofuels 180498 36591 005330_GCAT 0 0 0 0 Singapore Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Frankiaceae Frankia Frankia symbiont of Datisca glomerata BACTERIAL Frankia symbiont of Datisca glomerata Gi04474 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Agricultural 656024 39113 005332_GCAT 0 In progress 0 0 0 USA Datisca glomerata Datisca glomerata Aerobe Filament-shaped Sporulating Mesophile gram+ Symbiotic Mutualistic Datisca glomerata None Host, Soil, Plant symbiont Nonmotile Nitrogen fixation, Non-Pathogen Chemoorganotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Sinorhizobium BACTERIAL Sinorhizobium fredii USDA 257 USDA 257 Gi04475 Genome incomplete Public Goettingen Genomics Laboratory Streit W wolfgang.streit@uni-hamburg.de http://www.mikrobiologie-hamburg.de Biotechnological 382 005333_GCAT 0 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Symbiotic Endosymbiotic intracellular Mutualistic Legume plants None Host, Soil, Plant root 30 Motile Nitrogen fixation Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae RdAW RdAW Gi04476 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 656912 39127 005334_GCAT 0 0 0 0 USA Homo sapiens Facultative Rod-shaped Mesophile gram- Free living Sinusitis, Septicemia, Chronic bronchitis, Meningitis, Otitis media Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NT127 NT127 Gi04477 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 656913 39125 005335_GCAT 0 0 0 0 USA Homo sapiens Facultative Rod-shaped Mesophile gram- Free living Sinusitis, Septicemia, Otitis media, Meningitis, Chronic bronchitis Host Nonmotile Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium BACTERIAL Clostridium tetani drde drde Gi04478 Genome Permanent Draft Public DRDO Singh L. lst2397@rediffmail.com Animal Pathogen, Medical, Human Pathogen 1513 005336_GCAT 0 Draft Level 1: Standard Draft 0 0 0 India decaying fish sample Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Tetanus Host Motile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus BACTERIAL Bacillus pumilus IKMB12-518F IKMB12-518F Gi04479 Genome incomplete Public IGIB Medical 1408 39145 005337_GCAT 0 0 0 0 India Aerobe Rod-shaped Sporulating Mesophile gram+ Free living None Soil Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli ABU 83972 ABU 83972 Gi04480 Genome incomplete Public Goettingen Genomics Laboratory Biotechnological, Bioenergy 655817 38725 005338_GCAT 0 0 0 0 USA routinely used in the propagation of C. elegans Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Host, Human intestinal microflora 37 Motile Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus subtilis BACTERIAL Bacillus subtilis spizizenii W23 W23 Bacillus subtilis subsp. spizizenii str. W23 NRRL B-14472, BGSC 2A9 Gi04481 Genome incomplete Public BGSC Biotechnological 655816 38713 005339_GCAT 0 0 0 0 USA Facultative Rod-shaped Sporulating Mesophile gram+ Free living None Soil Motile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas BACTERIAL Pseudomonas syringae tabaci tabaci Gi04482 Genome incomplete Public Univ of North Carolina at Chapel Hill Plant Pathogen, Agricultural 317 38647 005340_GCAT 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plant rot Plants Motile Pathogen Heterotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis Erdman Erdman Gi04484 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 652616 38491 005342_GCAT 0 0 0 0 Sanger USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host Nonmotile Pathogen Chemoorganotroph Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingobium BACTERIAL Sphingobium chlorophenolicum Gi04486 Genome targeted Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 46429 005344_GCAT 0 Awaiting DNA 0 0 0 USA Mesophile gram- Free living Soil Bacteria Deinococcus-Thermus Deinococci Deinococcales Deinococcaceae Deinococcus BACTERIAL Deinococcus grandis Gi04487 Genome targeted Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 57498 005345_GCAT 0 Awaiting DNA 0 0 0 USA Aerobe Coccus-shaped Mesophile Free living None Human skin, Host Nonmotile Radiation resistant Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Acetobacter BACTERIAL Acetobacter aceti Gi04488 Genome targeted Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 435 005346_GCAT 0 Awaiting DNA 0 0 0 USA Aerobe gram- Symbiotic Plants None Acid-producing, Nitrogen fixation Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Zymomonas Zymomonas mobilis BACTERIAL Zymomonas mobilis mobilis ZM4 ZM4 Zymomonas mobilis subsp. mobilis ZM4 Gr00010 Gi04489 Resequencing targeted Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bioenergy, Energy production, Biotechnological, Biofuels 264203 005347_GCAT 0 Awaiting DNA 0 0 0 USA Facultative Rod-shaped Mesophile gram- Free living None 25 - 30 Motile Ethanol production Eukaryota Ascomycota Dothideomycetes Pleosporales Pleosporaceae Cochliobolus Cochliobolus sativus EUKARYAL Cochliobolus sativus ND90Pr ND90Pr Gi04490 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 45130 005348_GCAT 0 Awaiting DNA 0 0 9633 0 USA None Eukaryota Basidiomycota Agaricomycetes Agaricales Amanitaceae Amanita Amanita thiersii EUKARYAL Amanita thiersii Gi04491 Genome targeted Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural, Biotechnological, Biofuels, Bioenergy 235537 005349_GCAT 0 Awaiting DNA 0 0 0 USA None Host Cellulose degrader Eukaryota Basidiomycota Pucciniales Cronartiaceae Cronartium Cronartium quercuum EUKARYAL Cronartium quercuum fusiforme Cronartium quercuum f. sp. fusiforme Gi04492 Genome targeted Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Bioremediation 136831 005350_GCAT 0 Awaiting DNA 0 0 0 USA None Eukaryota Chlorophyta Trebouxiophyceae Botryococcaceae Botryococcus Botryococcus braunii EUKARYAL Botryococcus braunii Showa Showa Gi04493 Genome targeted Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Bioenergy 38881 005351_GCAT 0 Awaiting DNA 0 0 0 USA Eukaryota Basidiomycota Agaricomycetes Boletales Pisolithaceae Pisolithus Pisolithus tinctorius EUKARYAL Pisolithus tinctorius Marx Marx Gi04494 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 37468 005352_GCAT 0 Awaiting DNA 0 0 0 USA None Ectomycorrhizal Eukaryota Basidiomycota Agaricomycetes Boletales Pisolithaceae Pisolithus Pisolithus microcarpus EUKARYAL Pisolithus microcarpus Gi04495 Genome targeted Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 178872 005353_GCAT 0 Awaiting DNA 0 0 0 USA None Ectomycorrhizal Eukaryota Streptophyta Brassicales Brassicaceae Boechera EUKARYAL Boechera holboellii Gi04496 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 93890 005354_GCAT 0 Awaiting DNA 0 0 0 USA None Ectomycorrhizal Eukaryota Basidiomycota Agaricomycetes Russulales Meruliaceae Phlebiopsis EUKARYAL Phlebiopsis gigantea Gi04497 Genome targeted Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Bioenergy 82310 005355_GCAT 0 Awaiting DNA 0 0 0 USA None Lignin degrader Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli BL21 BL21 Escherichia coli BL21 ATCC BAA-1025 Yes Gc01050 Genome Complete and Published Public ACBT B21 2009-06-30 Unpublished Biotechnological 511693 28965 005356_GCAT 0 NC_012892 Complete Level 6: Finished 4557 4243 1 0 50 Austria Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Human intestinal microflora, Host 37 Motile Non-Pathogen Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus dysgalactiae BACTERIAL Streptococcus dysgalactiae equisimilis GGS_124 GGS_124 G Streptococcus dysgalactiae subsp. equisimilis GGS_124 Gc01051 Genome Complete and Published Public International Medical Center Kirikae T SDEG 2009-07-01 Unpublished Cattle Pathogen, Animal Pathogen 486410 27849 005357_GCAT 0 NC_012891 Complete Level 6: Finished 2106 2174 1 0 39 Sanger Japan can be isolated from humans and swine Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Singles Endocarditis, Meningitis, Septicemia Host Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus WBG10049 WBG10049 Gi04498 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 585160 39241 005358_GCAT 0 0 0 0 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 30 - 37 Nonmotile Pathogen, Meticillin resistant Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus M899 M899 Gi04499 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 585159 39239 005359_GCAT 0 0 0 0 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Septicemia, Pneumonia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus M1015 M1015 Gi04500 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 585156 39237 005360_GCAT 0 0 0 0 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus H19 H19 Gi04501 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 585155 39233 005361_GCAT 0 0 0 0 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Singles, Clusters Septicemia, Pneumonia Host 30 - 37 Nonmotile Pathogen, Meticillin resistant Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus D139 D139 Gi04502 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 585152 39231 005362_GCAT 0 0 0 0 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Septicemia, Pneumonia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus C427 C427 Gi04503 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 585151 39229 005363_GCAT 0 0 0 0 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus C101 C101 Gi04504 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 585149 39227 005364_GCAT 0 0 0 0 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Septicemia, Pneumonia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus A10102 A10102 Gi04505 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 553601 39223 005365_GCAT 0 0 0 0 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Singles, Clusters Pneumonia, Septicemia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus A9765 A9765 Gi04506 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 553594 39221 005366_GCAT 0 0 0 0 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 30 - 37 Nonmotile Pathogen, Meticillin resistant Eukaryota Ascomycota Sordariomycetes Hypocreales Nectriaceae Gibberella EUKARYAL Fusarium circinatum FSP 34 FSP 34 Gibberella circinata Gi04507 Genome incomplete Public FABI, Inqaba Biotechnologies Wingfield B Brenda.Wingfield@fabi.up.ac.za http://web.up.ac.za/default.asp?ipkCategoryID=10893 Plant Pathogen, Agricultural 48490 005367_GCAT 0 Complete 10x 50000 0 0 South Africa Infected tomato plant Infected tomato plant Pinus sp. Facultative Mesophile Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella drancourtii BACTERIAL Legionella drancourtii LLAP12 LLAP12 Gi04508 Genome incomplete Public CNRS Medical 658187 39279 005368_GCAT 0 NZ_ACUL00000000 Draft 4x 4067 3759 39 454 France didier.raoult@gmail.com Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Legionellosis, Pneumonia Soil, Host, Fresh water Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Candidatus Liberibacter Candidatus Liberibacter solanacearum BACTERIAL Candidatus Liberibacter solanacearum CLso-ZC1 CLso-ZC1 Gi04509 Genome incomplete Public USDA-ARS USDA Plant Pathogen, Agricultural 658172 39273 005369_GCAT 0 0 0 0 USA 2008 Mesophile gram- Zebra Chip Host Pathogen Bacteria Firmicutes Bacilli Bacillales Paenibacillaceae Thermobacillus BACTERIAL Thermobacillus composti KWC4, DSM 18247 KWC4, DSM 18247 DSM 18247, JCM 13945 Yes Gi04510 Genome incomplete Public DOE Joint Genome Institute DOE Anderson I IJAnderson@lbl.gov Bioenergy, Cellulase production, Biotechnological 377615 005371_GCAT 0 Awaiting DNA 0 0 60 Sanger, 454 USA composting reactor 17625178 Aerobe Rod-shaped Sporulating Thermophile Halotolerant 5.6 - 10.1 0.5 - 0.7 um 2.0 - 5.0 um gram- Free living None 50 Xylan degrader Bacteria Firmicutes Bacilli Bacillales Paenibacillaceae Cohnella BACTERIAL Cohnella panacarvi Gsoil 349, DSM 18696 Gsoil 349, DSM 18696 DSM 18696, KCTC 13060 Yes Gi04511 Genome incomplete Public DOE Joint Genome Institute DOE Anderson I IJAnderson@lbl.gov Bioenergy, Cellulase production, Biotechnological 400776 005372_GCAT 0 Awaiting DNA 0 0 60 Sanger, 454 USA Soil, ginseng field; South Korea, Daejeon Korea Daejeon, Korea 36.350412 127.384548 Aerobe Rod-shaped Sporulating Mesophile gram+ Free living None Soil Nonmotile Xylan degrader Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Xylanibacter BACTERIAL Xylanibacter oryzae KB 3, DSM 17970 KB 3, DSM 17970 JCM 13648, DSM 17970 Yes Gi04512 Genome incomplete Public DOE Joint Genome Institute DOE Anderson I IJAnderson@lbl.gov Biotechnological, Bioenergy 185293 005373_GCAT 0 Awaiting DNA 0 0 43.6 454, Sanger USA rice-plant residue in flooded anoxic rice-field soil in Yamagata, Japan Japan 16957124 38.25222 140.335602 Obligate anaerobe Rod-shaped Nonsporulating Mesophile 5.7 - 6.2 gram- Free living None Rice paddies 30 Nonmotile Xylan degrader Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Sphingobacteriaceae Mucilaginibacter BACTERIAL Mucilaginibacter paludis TPT56, DSM 18603 TPT56, DSM 18603 DSM 18603, ATCC BAA-1394, VKM B-2446 Yes Gi04513 Genome incomplete Public DOE Joint Genome Institute DOE Anderson I IJAnderson@lbl.gov Bioenergy, Tree of Life, Biotechnological 423351 005374_GCAT 0 In progress 0 0 46.1 Sanger, 454 USA the acidic Sphagnum peat bog Bakchar, in western Siberia, Russia sample collected from 10-20 cm below the surface of the Sphagnum peat bog Bakchar Russia 17911309 Bakchar, in western Siberia, Russia 56.51 82.5 Facultative Rod-shaped Psychrotolerant 4.2 - 8.2 gram- Free living None Rice paddies 20 Nonmotile Xylan degrader Heterotroph Bacteria Firmicutes Bacilli Bacillales Bacillaceae Amphibacillus BACTERIAL Amphibacillus xylanus Ep01, DSM 6626 Ep01, DSM 6626 JCM 7361, IFO 15112, ATCC 51415, NBRC 15112, DSM 6626 Yes Gi04514 Genome incomplete Public DOE Joint Genome Institute DOE Anderson I IJAnderson@lbl.gov Biotechnological, Bioenergy 1449 005375_GCAT 0 Awaiting DNA 0 0 36 454, Sanger USA composts of manure with grass and rice straw Facultative Rod-shaped Sporulating Mesophile 8 - 10 0.3 - 0.5 um 0.9 - 1.9 um gram+ Free living None Rice paddies Motile Xylan degrader Chemoorganotroph Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus C160 C160 Gi04515 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 585150 39531 005376_GCAT 0 0 0 0 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Septicemia, Pneumonia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus Btn1260 Btn1260 Gi04516 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 585148 39529 005377_GCAT 0 0 0 0 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus 58-424 58-424 Gi04517 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 585144 39527 005378_GCAT 0 0 0 0 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Septicemia, Pneumonia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus M809 M809 Gi04518 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 585157 39525 005379_GCAT 0 0 0 0 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. SM9913 BACTERIAL Pseudoalteromonas sp. SM9913 SM9913 Gi04519 Genome incomplete Public Shandong Univ Environmental, Ecological 234831 39311 005380_GCAT 0 0 0 0 China Mesophile gram- Free living None Marine, Coastal Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia muridarum BACTERIAL Chlamydia muridarum MopnTet14 MopnTet14 Gi04520 Genome incomplete Public Oregon State Univ Animal Pathogen, Medical, Human Pathogen 658600 39295 005381_GCAT 0 0 0 0 United Kingdom Chlamydia grown in McCoy cell culture Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Ocular infection Host Nonmotile Pathogen Bacteria Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis L2tet1 L2tet1 Gi04521 Genome incomplete Public Oregon State Univ Animal Pathogen, Medical, Human Pathogen 658599 39293 005382_GCAT 0 0 0 0 USA Homo sapiens Rod-shaped Mesophile gram- Symbiotic Endosymbiotic intracellular Parasitic Ocular infection Host Nonmotile Pathogen Bacteria Aquificae Aquificae (class) Aquificales Aquificaceae Thermocrinis BACTERIAL Thermocrinis ruber OC 1/4, DSM 12173 OC 1/4, DSM 12173 DSM 12173 Yes Gi04522 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Biotechnological, Tree of Life, GEBA 75906 005383_GCAT 0 Awaiting DNA 0 0 0 USA pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyo USA 9758770 Octopus Spring in Yellowstone National Park, Wyo 44.543652 -110.79792 Anaerobe Rod-shaped Hyperthermophile gram- Free living Clusters, Filaments, Singles Hot spring, Fresh water 80 Motile Pink-colored Chemolithoautotroph Bacteria Cyanobacteria Pleurocapsales Pleurocapsa Pleurocapsa sp. BACTERIAL Pleurocapsa sp. PCC 7319 PCC 7319 PCC 7319 Gi04523 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 44475 005384_GCAT 0 In progress 0 0 0 USA Aerobe Mesophile Free living None Fresh water Nitrogen fixation Photoheterotroph Bacteria Cyanobacteria Nostocales Nostocaceae Nostoc BACTERIAL Nostoc sp. PCC 7107 PCC 7107 PCC 7107 Gi04524 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 1180 005385_GCAT 0 In progress 0 0 0 USA Aerobe Mesophile Free living None Fresh water Nitrogen fixation Photoheterotroph Bacteria Cyanobacteria Nostocales Rivulariaceae Calothrix Calothrix sp. BACTERIAL Calothrix sp. PCC 6303 PCC 6303 PCC 6303 Gi04525 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 1187 005386_GCAT 0 In progress 0 0 0 USA Aerobe Mesophile Free living None Fresh water Nitrogen fixation Photoheterotroph Bacteria Cyanobacteria Chroococcales BACTERIAL Cyanobacterium sp. PCC 10605 PCC 10605 PCC 10605 Gi04526 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov Tree of Life, GEBA-CYANO, GEBA 102234 005387_GCAT 0 In progress 0 0 0 USA Aerobe Mesophile Free living None Fresh water Nitrogen fixation Photoheterotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. oral taxon 849 BACTERIAL Actinomyces sp. oral taxon 849 F0330 F0330 Actinomyces sp. oral taxon 849 str. F0330 BEI Shipping Unknown Gi04527 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Human Microbiome Project (HMP), Medical 653386 39355 005388_GCAT 975 HOMD: tax_849 0 Awaiting DNA 0 0 0 USA Human oral sample Dewhirst, Izard Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Gingivitis, Actinomycosis, Periodontal infection Human skin, Host Nonmotile Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae Clostridium innocuum BACTERIAL Clostridium innocuum 6_1_30 6_1_30 Clostridium innocuum 6_1_30 BEI Shipping Unknown Gi04528 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Human Microbiome Project (HMP), Medical 450752 39359 005389_GCAT 976 0 DNA Received 0 0 0 Sanger USA Human GI tract Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Sporulating Mesophile gram+ Free living Singles, Pairs None Human intestinal microflora, Host Motile Chemoorganotroph Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria BACTERIAL Neisseria meningitidis M2091, ATCC 13091 M2091, ATCC 13091 B ATCC 13091 No Gi04529 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu Medical, Human Microbiome Project (HMP) 487 005390_GCAT 602 0 0 0 0 USA Human nose Homo sapiens Airways Nasal Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Host, Human airways Nonmotile Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sp. 1_1_41A1FAA BACTERIAL Clostridium sp. 1_1_41A1FAA 1_1_41A1FAA Clostridium sp. 1_1_41A1FAA BEI Shipping Unknown Gi04530 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 457397 39361 005391_GCAT 977 0 Awaiting DNA 0 0 0 USA Human GI tract Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Anaerobe Sporulating Mesophile gram+ Pairs, Singles None Human intestinal microflora, Host Motile Chemoorganotroph Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae Coprobacillus Coprobacillus sp. 8_2_54BFAA BACTERIAL Coprobacillus sp. 8_2_54BFAA 8_2_54BFAA Coprobacillus sp. 8_2_54BFAA BEI Shipping Unknown Gi04531 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 469597 39365 005392_GCAT 978 0 DNA Received 0 0 0 USA Human feces Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Anaerobe Sporulating Mesophile gram+ Free living Host Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae Coprobacillus Coprobacillus sp. 8_1_38FAA BACTERIAL Coprobacillus sp. 8_1_38FAA 8_1_38FAA Coprobacillus sp. 8_1_38FAA BEI Shipping Unknown Gi04532 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 450746 39363 005393_GCAT 979 0 DNA Received 0 0 0 USA Human feces Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Anaerobe Sporulating Mesophile gram+ Free living Host Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Dorea Dorea sp. D27 BACTERIAL Dorea sp. D27 D27 Dorea sp. D27 BEI Shipping Unknown Gi04533 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 658665 39367 005394_GCAT 980 0 DNA Received 0 0 0 USA Human feces Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae Erysipelotrichaceae bacterium 6_1_45 BACTERIAL Erysipelotrichaceae bacterium sp. 6_1_45 6_1_45 Erysipelotrichaceae bacterium 6_1_45 BEI Shipping Unknown Gi04534 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 469614 39373 005395_GCAT 981 0 DNA Received 0 0 0 USA Human feces Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Mesophile gram+ Free living None Host Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae BACTERIAL Erysipelotrichaceae bacterium sp. 21_3 21_3 Erysipelotrichaceae bacterium 21_3 BEI Shipping Unknown Gi04535 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 658657 39369 005396_GCAT 982 0 DNA Received 0 0 0 USA Human feces Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Mesophile gram+ Free living None Host Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae BACTERIAL Erysipelotrichaceae bacterium sp. 3_1_53 3_1_53 Erysipelotrichaceae bacterium 3_1_53 BEI Shipping Unknown Gi04536 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html Medical, Human Microbiome Project (HMP) 658659 39371 005397_GCAT 983 0 DNA Received 0 0 0 USA Human feces Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Mesophile gram+ Free living None Host Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium Eubacterium sp. 3_1_31 BACTERIAL Eubacterium sp. 3_1_31 3_1_31 Eubacterium sp. 3_1_31 BEI Shipping Unknown Gi04537 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 457402 39375 005398_GCAT 984 0 DNA Received 0 0 0 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Anaerobe Mesophile gram+ Free living Host, Oral microflora Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Lachnospiraceae bacterium 6_1_37FAA BACTERIAL Lachnospiraceae bacterium sp. 6_1_37FAA 6_1_37FAA Lachnospiraceae bacterium 6_1_37FAA BEI Shipping Unknown Gi04538 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 658656 39393 005399_GCAT 985 0 DNA Received 0 0 0 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Mesophile gram+ Free living Host Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Lachnospiraceae bacterium 4_1_47FAA BACTERIAL Lachnospiraceae bacterium sp. 4_1_47FAA 4_1_47FAA Lachnospiraceae bacterium 4_1_47FAA BEI HM-149 Unknown Gi04539 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 658084 39385 005400_GCAT 986 0 Awaiting DNA 0 0 0 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Mesophile gram+ Free living Host Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Lachnospiraceae bacterium 9_1_43BFAA BACTERIAL Lachnospiraceae bacterium sp. 9_1_43BFAA 9_1_43BFAA Lachnospiraceae bacterium 9_1_43BFAA BEI HM-151 Unknown Gi04540 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 658088 39399 005401_GCAT 987 0 DNA Received 0 0 0 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Mesophile gram+ Free living Host Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Lachnospiraceae bacterium 1_4_56FAA BACTERIAL Lachnospiraceae bacterium sp. 1_4_56FAA 1_4_56FAA Lachnospiraceae bacterium 1_4_56FAA BEI HM-161 Unknown Gi04542 Gi04541 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 658655 39379 005402_GCAT 988 0 Awaiting DNA 0 0 0 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Mesophile gram+ Free living Host Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Lachnospiraceae bacterium 5_2_56FAA BACTERIAL Ralstonia sp. 5_2_56FAA 5_2_56FAA Ralstonia sp. 5_2_56FAA BEI Shipping Unknown Gi04543 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Human Microbiome Project (HMP), Medical 658080 39391 005403_GCAT 989 0 Awaiting DNA 0 0 0 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Mesophile gram+ Free living Host Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Lachnospiraceae bacterium 1_1_57FAA BACTERIAL Lachnospiraceae bacterium sp. 1_1_57FAA 1_1_57FAA Lachnospiraceae bacterium 1_1_57FAA BEI HM-156 Unknown Gi04544 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 658081 39377 005404_GCAT 990 0 Awaiting DNA 0 0 0 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Mesophile gram+ Free living Host Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Lachnospiraceae bacterium 2_1_58FAA BACTERIAL Lachnospiraceae bacterium sp. 2_1_58FAA 2_1_58FAA Lachnospiraceae bacterium 2_1_58FAA BEI HM-154 Unknown Gi04545 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 658082 39381 005405_GCAT 991 0 Awaiting DNA 0 0 0 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Mesophile gram+ Free living Host Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Lachnospiraceae bacterium 6_1_63FAA BACTERIAL Lachnospiraceae bacterium sp. 6_1_63FAA 6_1_63FAA Lachnospiraceae bacterium 6_1_63FAA BEI HM-150 Unknown Gi04546 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 658083 39395 005406_GCAT 992 0 DNA Received 0 0 0 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Mesophile gram+ Free living Host Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Lachnospiraceae bacterium 5_1_57FAA BACTERIAL Lachnospiraceae bacterium sp. 5_1_57FAA 5_1_57FAA Lachnospiraceae bacterium 5_1_57FAA BEI HM-157 Unknown Gi04547 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 658085 39387 005407_GCAT 993 0 Awaiting DNA 0 0 0 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Mesophile gram+ Free living Host Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Lachnospiraceae bacterium 3_1_57FAA_CT1 BACTERIAL Lachnospiraceae bacterium sp. 3_1_57FAA_CT1 3_1_57FAA_CT1 Lachnospiraceae bacterium 3_1_57FAA_CT1 BEI HM-155 Unknown Gi04548 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 658086 39383 005408_GCAT 994 0 Awaiting DNA 0 0 0 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Mesophile gram+ Free living Host Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Lachnospiraceae bacterium 7_1_58FAA BACTERIAL Lachnospiraceae bacterium sp. 7_1_58FAA 7_1_58FAA Lachnospiraceae bacterium 7_1_58FAA BEI HM-153 Unknown Gi04549 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Human Microbiome Project (HMP), Medical 658087 39397 005409_GCAT 995 0 Awaiting DNA 0 0 0 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Mesophile gram+ Free living Host Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Lachnospiraceae bacterium 5_1_63FAA BACTERIAL Lachnospiraceae bacterium sp. 5_1_63FAA 5_1_63FAA Lachnospiraceae bacterium 5_1_63FAA BEI HM-152 Unknown Gi04550 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 658089 39389 005410_GCAT 996 0 Awaiting DNA 0 0 0 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Mesophile gram+ Free living Host Error!!! Error!!! Error!!! Error!!! Error!!! Error!!! Error!!! BACTERIAL Paenibacillus sp. 4_7_47FAA 4_7_47FAA Paenibacillus sp. 4_7_47FAA BEI Shipping Unknown Gi04551 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 658660 39401 005411_GCAT 997 0 DNA Received 0 0 0 USA Human gastrointestinal tract sample Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Host, Human fecal, Human intestinal microflora Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Papillibacter Papillibacter sp. 4_1_38B BACTERIAL Papillibacter sp. 4_1_38B 4_1_38B Papillibacter sp. 4_1_38B Unknown Gi04552 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 457407 39403 005412_GCAT 998 0 DNA Received 0 0 0 USA Human gastrointestinal tract sample Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Mesophile Free living Host, Human intestinal microflora Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Parabacteroides Parabacteroides sp. D25 BACTERIAL Parabacteroides sp. D25 D25 Parabacteroides sp. D25 BEI Shipping Unknown Gi04553 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Human Microbiome Project (HMP), Medical 658661 39405 005413_GCAT 999 0 DNA Received 0 0 0 Sanger, 454-FLX USA Human feces Emma Allen-Vercoe, U. Guelph, Canada Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Human fecal, Host, Human intestinal microflora Nonmotile Non-Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Parabacteroides Parabacteroides sp. D26 BACTERIAL Parabacteroides sp. D26 D26 Parabacteroides sp. D26 BEI Shipping Unknown Gi04554 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 658662 39407 005414_GCAT 1000 0 DNA Received 0 0 0 Sanger, 454-FLX USA Human feces Emma Allen-Vercoe, U. Guelph, Canada Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Human intestinal microflora, Human fecal, Host Nonmotile Non-Pathogen Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Phascolarctobacterium Phascolarctobacterium sp. 3_1syn4 BACTERIAL Phascolarctobacterium sp. 3_1_syn4 3_1_syn4 Phascolarctobacterium sp. 3_1syn4 BEI Shipping Unknown Gi04555 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Human Microbiome Project (HMP), Medical 457408 39409 005415_GCAT 1001 0 DNA Received 0 0 0 454-FLX, Sanger USA Human feces Emma Allen-Vercoe, U. Guelph, Canada Human feces Homo sapiens Gastrointestinal tract Feces Mesophile Free living None Host, Human fecal, Human intestinal microflora Non-Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas sp. 31_2 BACTERIAL Porphyromonas sp. 31_2 31_2 Porphyromonas sp. 31_2 BEI Shipping Unknown Gi04556 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 658663 39411 005416_GCAT 1002 0 DNA Received 0 0 0 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Rod-shaped Mesophile gram- Free living Host, Human fecal Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Propionibacterium Propionibacterium sp. 5_U_42AFAA BACTERIAL Propionibacterium sp. 5_U_42AFAA 5_U_42AFAA Propionibacterium sp. 5_U_42AFAA BEI Shipping Unknown Gi04557 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 450748 39413 005417_GCAT 1003 0 DNA Received 0 0 0 USA Human gastrointestinal tract Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Opportunistic infection Host, Human skin Nonmotile Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia sp. 5_7_47FAA BACTERIAL Ralstonia sp. 5_7_47FAA 5_7_47FAA Ralstonia sp. 5_7_47FAA BEI Shipping Unknown Gi04558 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Human Microbiome Project (HMP), Medical 658664 39415 005418_GCAT 1004 0 DNA Received 0 0 0 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Aerobe Rod-shaped Mesophile gram- Free living Host, Human fecal Motile Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Ruminococcus Ruminococcus sp. 8_1_37FAA BACTERIAL Ruminococcus sp. 8_1_37FAA 8_1_37FAA Ruminococcus sp. 8_1_37FAA BEI Shipping Unknown Gi04559 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 457413 39417 005419_GCAT 1005 0 Awaiting DNA 0 0 0 USA Human feces Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Host Nonmotile Bacteria Synergistetes Synergistia Synergistales Synergistaceae Synergistes Synergistes sp. 3_1_syn1 BACTERIAL Synergistes sp. 3_1_syn1 3_1_syn1 Synergistes sp. 3_1_syn1 BEI HM-188 Unknown Gi04560 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 457415 39419 005420_GCAT 1006 0 DNA Received 0 0 0 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Obligate anaerobe Rod-shaped Mesophile gram- Free living None Human intestinal microflora, Host Motile Non-Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 4_1_36 BACTERIAL Bacteroides sp. 4_1_36 4_1_36 Bacteroides sp. 4_1_36 Unknown Gi04561 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 457393 39357 005421_GCAT 1007 0 Awaiting DNA 0 0 0 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Mesophile Free living Host, Human intestinal microflora Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus acidilactici BACTERIAL Pediococcus acidilactici 7_4 7_4 BEI Shipping Unknown Gi04562 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu ACXB Medical, Human Microbiome Project (HMP) 563194 40051 005422_GCAT 9024 0 DNA Received 0 0 0 USA Human fecal sample Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Gastrointestinal tract Feces Aerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Human intestinal microflora, Host Nonmotile Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Haloferax Haloferax mediterranei ARCHAEAL Haloferax volcanii R-4, ATCC 33500 R-4, ATCC 33500 Haloferax volcanii DS2 VKM B-174, CCM 3361, JCM 8866, DSM 1411, ATCC 33500 Yes Gi04563 Genome incomplete Public SDSU HaMed Biotechnological 523841 39645 005423_GCAT 0 In progress 5 3894 0 0 454 USA salt ponds, Alicante, Spain Spain Alicante, Spain 38.345203 -0.481006 Aerobe Disc-shaped Mesophile Halophile gram- Free living None Fresh water Motile Chemoorganotroph Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Haloarcula Haloarcula californiae ARCHAEAL Haloarcula sp. BJGN-2, ATCC 33799 BJGN-2, ATCC 33799 ATCC 33799 Gi04564 Genome incomplete Public SDSU HaCal Biotechnological 662475 39637 005424_GCAT 0 In progress 180 4420 0 0 454 USA salt brine, Baja California, Mexico Mexico Baja California, Mexico 30.840634 -115.283758 gram- Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Haloarcula Haloarcula sinaiiensis ARCHAEAL Haloarcula sinaiiensis ATCC 33800 ATCC 33800 ATCC 33800 Gi04565 Genome incomplete Public SDSU HaSin Biotechnological 662476 39639 005425_GCAT 0 In progress 10 4405 0 0 454 USA salt brine, Israel Israel gram- Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Haloarcula Haloarcula vallismortis ARCHAEAL Haloarcula vallismortis J.F. 54, ATCC 29715 J.F. 54, ATCC 29715 JCM 8877, IFO 14741, ATCC 29715 Yes Gi04566 Genome incomplete Public SDSU HaVal Biotechnological 662477 39641 005426_GCAT 0 In progress 88 3930 0 0 454 USA Salt pools, Bad Water Point, Death Valley, CA USA 36.455556 -116.866667 gram- Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Haloferax Haloferax denitrificans ARCHAEAL Haloferax denitrificans S1, ATCC 35960 S1, ATCC 35960 DSM 4425, ATCC 35960 Yes Gi04567 Genome incomplete Public SDSU HaDen Biotechnological 662478 39643 005427_GCAT 0 In progress 38 3830 0 0 454 USA Saltern, California USA Aerobe Disc-shaped Mesophile Halophile gram- Free living None Fresh water Motile Chemoorganotroph Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Haloferax Haloferax mucosum ARCHAEAL Haloferax mucosum PA12, ATCC BAA-1512 PA12, ATCC BAA-1512 ATCC BAA-1512 Yes Gi04568 Genome incomplete Public SDSU HaMuc Biotechnological 662479 39647 005428_GCAT 0 In progress 29 3371 0 0 454 USA Pastular mat from Hamelin pool, Shark Bay Australia May, 2004 Australia Shark Bay Australia -26.406446 114.278297 Aerobe Disc-shaped Mesophile Halophile gram- Free living None Fresh water Motile Chemoorganotroph Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Haloferax Haloferax sulfurifontis ARCHAEAL Haloferax sulfurifontis M6, DSM 16227 M6, DSM 16227 CCM 7217, JCM 12327, CIP 108334, ATCC BAA-897, DSM 16227 Yes Gi04569 Genome incomplete Public SDSU HaSul Biotechnological 662480 39649 005429_GCAT 0 In progress 36 3813 0 0 454 USA Microbial mats in a sulfur spring; USA, Oklahoma USA Aerobe Disc-shaped Mesophile Halophile gram- Free living None Fresh water Motile Chemoorganotroph Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Haloferax Haloferax volcanii ARCHAEAL Haloferax volcanii DS2, ATCC 29605 DS2, ATCC 29605 CCM 2852, ATCC 29605, DSM 3757, CGMCC 1.2150 Yes Gi04570 Genome incomplete Public SDSU HaVol Biotechnological 309800 39651 005430_GCAT 0 In progress 5 4012 0 0 454 USA Shore mud, Dead Sea Israel Dead Sea, Israel 31.500653 35.490986 Aerobe Disc-shaped Mesophile Halophile gram- Free living None Fresh water Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Peptostreptococcaceae Peptostreptococcus BACTERIAL Peptostreptococcus anaerobius 0009-10 Hillier 0009-10 Hillier Unknown Gi04571 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1261 005431_GCAT 630 0 Targeted 0 0 0 USA Endometrium Homo sapiens Female Urogenital tract Vaginal Anaerobe Coccus-shaped Mesophile gram+ Free living Host Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. BACTERIAL Prevotella sp. AY323525 AY323525 Unknown Gi04572 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 59823 005432_GCAT 644 0 Targeted 0 0 0 USA Human skin Blaser Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas BACTERIAL Porphyromonas uenonis Unknown Gi04573 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 281920 005433_GCAT 887 0 DNA Received 0 0 0 USA Sharon Hillier Homo sapiens Female Urogenital tract Vaginal Mesophile gram- Free living Human vaginal microflora, Host Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium BACTERIAL Bifidobacterium dentium Unknown Gi04574 Genome targeted Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 1689 005434_GCAT 169 0 Awaiting DNA 0 0 0 USA Human vagina Wilson/White Homo sapiens Urogenital tract Vaginal Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Vagina microflora, Host Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Aurantimonadaceae Aurantimonas BACTERIAL Aurantimonas coralicida Unknown Gi04577 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 182270 005437_GCAT 902 0 In progress 0 0 0 USA Homo sapiens Mesophile gram- Free living Host, Human fecal, Human intestinal microflora Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces BACTERIAL Actinomyces odontolyticus Unknown Gi04578 Genome incomplete Public NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 1660 005438_GCAT 54 0 In progress 0 0 0 454, Sanger USA Homo sapiens Airways Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Lung infection, Oral abscesses, Septicemia, Eye infection Human intestinal microflora, Host, Human oral microflora Nonmotile Pathogen Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus WI-184 WI-184 Gi04579 Genome incomplete Public Marshfield Clinic Research Foundation Medical, Human Pathogen 661155 39571 005439_GCAT 0 0 0 0 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 30 - 37 Nonmotile Meticillin resistant, Pathogen Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus rhamnosus BACTERIAL Lactobacillus rhamnosus MSUIS1 MSUIS1 Gi04580 Genome incomplete Public CMST Medical 661506 39597 005440_GCAT 0 Awaiting DNA 0 0 0 Australia Homo sapiens Facultative Rod-shaped Mesophile gram- Free living None Host Nonmotile Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae CIRS 101 CIRS 101 Gi04581 Genome incomplete Public LANL Medical, Human Pathogen 661513 39603 005441_GCAT 0 NZ_ACVW00000000 Draft 11x 18 4059 3661 47.5 USA Dhaka, Bangladesh 2002 Bangladesh Dhaka, Bangladesh 23.709921 90.407143 Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Food poisoning, Cholera Fresh water Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli NCTC 86 NCTC 86 NCTC 86, DSM 301, ATCC 4157 Gi04582 Genome incomplete Public Brookhaven Natl Lab Biotechnological 662541 39667 005442_GCAT 0 0 0 0 USA 1885 Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles Host, Human intestinal microflora 37 Motile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus mutans Gi04586 Genome incomplete Public Univ of Madras Dental Pathogen, Medical, Human Pathogen 1309 38711 005446_GCAT 171101 0 In progress 0 0 0 India Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Dental caries Host, Oral microflora Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium diphtheriae gravis Gi04587 Genome incomplete Public Univ of Madras Medical, Human Pathogen 1717 38709 005447_GCAT 0 In progress 0 0 0 India Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Diphtheria, Respiratory infection Host Nonmotile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Candidatus Regiella Candidatus Regiella insecticola BACTERIAL Candidatus Regiella insecticola LSR1 LSR1 Gi04588 Genome incomplete Public International Aphid Genomics Consortium Evolutionary, Biotechnological 663321 39723 005448_GCAT 0 0 0 0 454 International Acyrthosiphon pisum Acyrthosiphon pisum Acyrthosiphon pisum Mesophile gram- Symbiotic Acyrthosiphon pisum 7029 Singles None Endosymbiont, Host, Insect endosymbiont Bacteria Aquificae Aquificae (class) Aquificales Aquificaceae Hydrogenobaculum Hydrogenobaculum sp. SN BACTERIAL Hydrogenobaculum sp. SN SN Hydrogenobaculum sp. SN Gi04589 Genome incomplete Public DOE Joint Genome Institute DOE Biotechnological 547146 39709 005449_GCAT 0 0 0 0 USA Aerobe Rod-shaped Nonsporulating Thermophile gram- Free living None Fresh water 58 Motile Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma BACTERIAL Mycoplasma genitalium M2321 M2321 Mycoplasma genitalium M2321 No Gi04590 Genome incomplete Public LSU Health Sciences Center NIH Martin DH dhmartin@lsuhsc.edu www.lsuhsc.edu Medical, Human Pathogen 2097 39739 005450_GCAT 0 In progress 0 0 1 0 0 454 USA Copenhagen, Denmark Male Urethra Orig. isolated in Copenhagen, Denmark; sequenced DNA maintained at LSU Health Sciences Center. 1995 Denmark 8789002 Copenhagen, Denmark 55.676111 12.568333 Homo sapiens 9606 Male Urethritis Urogenital tract Urethra Aerobe Flask-shaped Nonsporulating Mesophile Urogenital infection Host, Urogenital tract 37C Motile Bacteria Cyanobacteria Nostocales Rivulariaceae Rivularia BACTERIAL Rivularia sp. PCC 7116 PCC 7116 ATCC 29111, PCC 7116 Gi04591 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 373994 005451_GCAT 0 In progress 5410 0 40.8 USA Aerobe Filament-shaped Mesophile gram- Free living Filaments None Marine Motile Chemoheterotroph Bacteria Cyanobacteria Nostocales Nostocaceae Anabaena BACTERIAL Anabaena sp. PCC 7108 PCC 7108 ATCC 29208, PCC 7108 Gi04592 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 163908 005452_GCAT 0 In progress 0 0 42.3 USA Aerobe Mesophile gram- Free living None Motile Autotroph Bacteria Cyanobacteria Oscillatoriales Leptolyngbya BACTERIAL Leptolyngbya sp. PCC 6306 PCC 6306 ATCC 27894, PCC 6306, CCAP 1463/1 Gi04593 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 111781 005453_GCAT 0 In progress 0 0 44.4 USA Aerobe Mesophile gram- Free living None Fresh water Nonmotile Chemoheterotroph Bacteria Cyanobacteria Prochlorales Prochlorotrichaceae Prochlorothrix Prochlorothrix hollandica BACTERIAL Prochlorothrix hollandica PCC 9006 PCC 9006 CCMP682, PCC 9006, CCAP 1490/1 Yes Gi04594 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 317619 005454_GCAT 0 In progress 3370 0 51.6 USA Water, lake, Lake Loosdrecht,The Netherlands July 9, 1984 Netherlands Lake Loosdrecht,The Netherlands 52.2 5.5 Aerobe Mesophile 8.4 Free living None Fresh water Nonmotile Eukaryota Streptophyta Bryopsida Dicranales Ditrichaceae Ceratodon Ceratodon purpureus EUKARYAL Ceratodon purpureus GG1 GG1 Gi04595 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 3225 005455_GCAT 0 In progress 0 0 0 USA Eukaryota Streptophyta Bryopsida Dicranales Ditrichaceae Ceratodon Ceratodon purpureus EUKARYAL Ceratodon purpureus R40 R40 Gi04596 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 3225 005457_GCAT 0 In progress 0 0 0 USA Eukaryota Streptophyta Liliopsida Poales Poaceae Sorghum EUKARYAL Sorghum versicolor Gr00030 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 29704 005459_GCAT 0 Awaiting DNA 0 0 0 USA Eukaryota Streptophyta Liliopsida Poales Poaceae Sorghum EUKARYAL Sorghum propinquum Gr00031 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 132711 005460_GCAT 0 Awaiting DNA 0 0 0 USA Eukaryota Streptophyta Liliopsida Poales Poaceae Brachypodium Brachypodium distachyon EUKARYAL Brachypodium distachyon Bd1-1 Bd1-1 Brachypodium distachyon Gr00032 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural, Energy production, Biotechnological, Biofuels 15368 005461_GCAT 0 In progress 0 0 0 USA Eukaryota Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas EUKARYAL Chlamydomonas reinhardtii CC-124 PE CC-124 PE Ge00333 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 3055 005462_GCAT 0 In progress 0 0 0 USA Eukaryota Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas EUKARYAL Chlamydomonas reinhardtii CC-425 x CC-124 CC-425 x CC-124 Ge00334 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 3055 005463_GCAT 0 In progress 0 0 0 USA Eukaryota Streptophyta Liliopsida Poales Poaceae Brachypodium Brachypodium distachyon EUKARYAL Brachypodium distachyon Bd30-1 Bd30-1 Brachypodium distachyon Gr00033 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural, Energy production, Biotechnological, Biofuels 15368 005464_GCAT 0 Awaiting DNA 0 0 0 USA Eukaryota Streptophyta Liliopsida Poales Poaceae Brachypodium Brachypodium distachyon EUKARYAL Brachypodium distachyon Bd21-3 Bd21-3 Brachypodium distachyon Gr00034 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural, Energy production, Biotechnological, Biofuels 15368 005465_GCAT 0 In progress 0 0 0 USA Eukaryota Streptophyta Liliopsida Poales Poaceae Brachypodium Brachypodium distachyon EUKARYAL Brachypodium distachyon Bd3-1 Bd3-1 Brachypodium distachyon Gr00035 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural, Energy production, Biotechnological, Biofuels 15368 005466_GCAT 0 In progress 0 0 0 USA Eukaryota Bigelowiella EUKARYAL Bigelowiella natans CCMP2755 CCMP2755 Ge00335 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 227086 005467_GCAT 0 In progress 0 0 0 USA None Eukaryota Ascomycota Sordariomycetes Diaporthales Cryphonectriaceae Cryphonectria EUKARYAL Cryphonectria parasitica EP155 EP155 Chestnut blight fungus Ge00336 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Plant Pathogen, Agricultural 5116 005468_GCAT 0 Complete 0 0 0 USA Chestnut blight Pathogen Eukaryota Ascomycota Sordariomycetes Sordariales Sordariaceae Neurospora Neurospora crassa EUKARYAL Neurospora crassa 1211 1211 Gr00036 Resequencing incomplete Public DOE Joint Genome Institute DOE Baker S scott.baker@pnl.gov 5141 005469_GCAT 0 In progress 0 0 54 Illumina USA Filament-shaped None Eukaryota Ascomycota Sordariomycetes Sordariales Sordariaceae Neurospora Neurospora crassa EUKARYAL Neurospora crassa 1303 1303 Gr00037 Resequencing incomplete Public DOE Joint Genome Institute DOE Baker S scott.baker@pnl.gov 5141 005470_GCAT 0 In progress 0 0 54 Illumina USA Filament-shaped None Eukaryota Ascomycota Sordariomycetes Sordariales Sordariaceae Neurospora Neurospora crassa EUKARYAL Neurospora crassa 3246 3246 Gr00038 Resequencing incomplete Public DOE Joint Genome Institute DOE Baker S scott.baker@pnl.gov 5141 005471_GCAT 0 In progress 0 0 54 Illumina USA Filament-shaped None Eukaryota Ascomycota Sordariomycetes Sordariales Sordariaceae Neurospora Neurospora crassa EUKARYAL Neurospora crassa 7035 7035 Gr00040 Resequencing incomplete Public DOE Joint Genome Institute DOE Baker S scott.baker@pnl.gov 5141 005473_GCAT 0 In progress 0 0 54 Illumina USA Filament-shaped None Eukaryota Ascomycota Sordariomycetes Sordariales Sordariaceae Neurospora Neurospora crassa EUKARYAL Neurospora crassa 49 49 Gr00041 Resequencing incomplete Public DOE Joint Genome Institute DOE Baker S scott.baker@pnl.gov 5141 005474_GCAT 0 In progress 0 0 54 Illumina USA Filament-shaped None Eukaryota Ascomycota Sordariomycetes Sordariales Sordariaceae Neurospora Neurospora crassa EUKARYAL Neurospora crassa 3566 3566 Gr00042 Resequencing incomplete Public DOE Joint Genome Institute DOE Baker S scott.baker@pnl.gov 5141 005475_GCAT 0 In progress 0 0 54 Illumina USA Filament-shaped None Eukaryota Ascomycota Sordariomycetes Sordariales Sordariaceae Neurospora Neurospora crassa EUKARYAL Neurospora crassa 7022 7022 Gr00044 Resequencing incomplete Public DOE Joint Genome Institute DOE Baker S scott.baker@pnl.gov 5141 005477_GCAT 0 In progress 0 0 54 Illumina USA Filament-shaped None Eukaryota Ascomycota Sordariomycetes Sordariales Sordariaceae Neurospora Neurospora crassa EUKARYAL Neurospora crassa 3921 3921 Gr00045 Resequencing incomplete Public DOE Joint Genome Institute DOE Baker S scott.baker@pnl.gov 5141 005478_GCAT 0 In progress 0 0 54 Illumina USA Filament-shaped None Eukaryota Ascomycota Sordariomycetes Sordariales Sordariaceae Neurospora Neurospora crassa EUKARYAL Neurospora crassa 3831 3831 Gr00046 Resequencing incomplete Public DOE Joint Genome Institute DOE Baker S scott.baker@pnl.gov 5141 005479_GCAT 0 In progress 0 0 54 Illumina USA Filament-shaped None Eukaryota Ascomycota Sordariomycetes Sordariales Sordariaceae Neurospora Neurospora crassa EUKARYAL Neurospora crassa 322 322 Gr00047 Resequencing incomplete Public DOE Joint Genome Institute DOE Baker S scott.baker@pnl.gov 5141 005480_GCAT 0 In progress 0 0 54 Illumina USA Filament-shaped None Eukaryota Ascomycota Sordariomycetes Sordariales Sordariaceae Neurospora Neurospora crassa EUKARYAL Neurospora crassa 3562 3562 Gr00048 Resequencing incomplete Public DOE Joint Genome Institute DOE Baker S scott.baker@pnl.gov 5141 005481_GCAT 0 In progress 0 0 54 Illumina USA Filament-shaped None Eukaryota Ascomycota Sordariomycetes Sordariales Sordariaceae Neurospora Neurospora crassa EUKARYAL Neurospora crassa 3114 3114 Gr00049 Resequencing incomplete Public DOE Joint Genome Institute DOE Baker S scott.baker@pnl.gov 5141 005482_GCAT 0 In progress 0 0 54 Illumina USA Filament-shaped None Eukaryota Ascomycota Saccharomycetes Saccharomycetales Lipomycetaceae Lipomyces Lipomyces starkeyi EUKARYAL Lipomyces starkeyi NRRL Y11557 NRRL Y11557 NRRL Y11557, ATCC 58680 Yes Gi04597 Genome incomplete Public DOE Joint Genome Institute DOE Lapidus A ALapidus@lbl.gov 29829 005483_GCAT 0 Awaiting DNA 0 0 54 USA soil, USA USA Filament-shaped None Eukaryota Ascomycota Saccharomycetes Saccharomycetales Lipomycetaceae Lipomyces Lipomyces starkeyi EUKARYAL Lipomyces starkeyi NRRL Y11557 NRRL Y11557 NRRL Y11557, ATCC 58680 Yes Ge00337 EST incomplete Public DOE Joint Genome Institute DOE Lapidus A ALapidus@lbl.gov 29829 005484_GCAT 0 Awaiting DNA 0 0 54 USA soil, USA USA Filament-shaped None Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Pichia EUKARYAL Pichia membranifaciens Gi04598 Genome incomplete Public DOE Joint Genome Institute DOE Lapidus A ALapidus@lbl.gov Biotechnological 4926 005485_GCAT 0 Awaiting DNA 0 0 0 USA Thermophile Sugars fermentor Xylose fermenting, Cellobiose-degrading Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Pichia EUKARYAL Pichia membranifaciens Ge00338 EST incomplete Public DOE Joint Genome Institute DOE Lapidus A ALapidus@lbl.gov Biotechnological 4926 005486_GCAT 0 Awaiting DNA 0 0 0 USA Thermophile Sugars fermentor Xylose fermenting, Cellobiose-degrading Eukaryota Ascomycota Taphrinomycetes Taphrinales Taphrinaceae Taphrina EUKARYAL Taphrina deformans Gi04599 Genome incomplete Public DOE Joint Genome Institute DOE Lapidus A ALapidus@lbl.gov Biotechnological 5011 005487_GCAT 0 Awaiting DNA 0 0 0 USA Thermophile Sugars fermentor Xylose fermenting, Cellobiose-degrading Eukaryota Ascomycota Taphrinomycetes Taphrinales Taphrinaceae Taphrina EUKARYAL Taphrina deformans Ge00339 EST incomplete Public DOE Joint Genome Institute DOE Lapidus A ALapidus@lbl.gov Biotechnological 5011 005488_GCAT 0 Awaiting DNA 0 0 0 USA Thermophile Sugars fermentor Cellobiose-degrading, Xylose fermenting Eukaryota Ascomycota Saccharomycetes Saccharomycetales Wickerhamomycetaceae Wickerhamomyces EUKARYAL Wickerhamomyces anomalus Gi04600 Genome incomplete Public DOE Joint Genome Institute DOE Lapidus A ALapidus@lbl.gov Biotechnological 4927 005489_GCAT 0 Awaiting DNA 0 0 0 USA Thermophile Sugars fermentor Cellobiose-degrading, Xylose fermenting Eukaryota Ascomycota Saccharomycetes Saccharomycetales Wickerhamomycetaceae Wickerhamomyces EUKARYAL Wickerhamomyces anomalus Ge00340 EST incomplete Public DOE Joint Genome Institute DOE Lapidus A ALapidus@lbl.gov Biotechnological 4927 005490_GCAT 0 Awaiting DNA 0 0 0 USA Thermophile Sugars fermentor Xylose fermenting, Cellobiose-degrading Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Pachysolen Pachysolen tannophilus EUKARYAL Pachysolen tannophilus NRRL Y-2460 NRRL Y-2460 NRRL Y-2460, ATCC 32691 Yes Gi04601 Genome incomplete Public DOE Joint Genome Institute DOE Lapidus A ALapidus@lbl.gov Biotechnological 4918 005491_GCAT 0 In progress 0 0 0 USA tanning liquor Thermophile Sugars fermentor Xylose fermenting, Cellobiose-degrading Eukaryota Streptophyta Brassicales Brassicaceae Arabidopsis EUKARYAL Arabidopsis lyrata Arabidopsis lyrata Gi04602 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 81970 005493_GCAT 0 Awaiting DNA 0 0 0 USA Eukaryota Streptophyta Brassicales Brassicaceae Arabidopsis EUKARYAL Arabidopsis arenosa Arabidopsis lyrata Gi04603 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 38785 005494_GCAT 0 Awaiting DNA 0 0 0 USA Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Leptospiraceae Leptonema BACTERIAL Leptonema illini 3055 3055 NCTC 11301, DSM 21528 Yes Gi04604 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 183 005495_GCAT 0 In progress 0 0 0 Illumina, 454-Titanium USA urine of a bull USA Mesophile Free living Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Odoribacter BACTERIAL Odoribacter splanchnicus 1651/6 1651/6 CCUG 21054, ATCC 29572, CIP 104287, NCTC 10825, LMG 8202, DSM 20712 Yes Gi04605 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org GEBA, Tree of Life 28118 005496_GCAT 0 In progress 0 0 35.1 USA abdominal abscess 168701 Homo sapiens Gastrointestinal tract Anaerobe Nonsporulating Mesophile 0.7 um 1-2.5 um gram- Free living None Host Nonmotile Nitrate reducer Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Spirochaeta BACTERIAL Spirochaeta thermophila H1, DSM 7334 H1, DSM 7334 ATCC 51460, DSM 7334 Yes Gi04606 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 215591 005497_GCAT 0 In progress 0 0 0 USA Hunter's Hot Spring, Oregon USA Hunter's Hot Spring, Oregon 42.22179 -120.367935 Anaerobe Spiral-shaped gram- Free living None Fresh water, Hot spring Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella bivia 653C, DSM 20514 653C, DSM 20514 NCTC 11156, DSM 20514, ATCC 29303 Yes Gi04607 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 28125 005498_GCAT 0 In progress 0 0 0 454-Titanium, Illumina USA Endometrium Homo sapiens Female Urogenital tract Anaerobe Mesophile Free living Host Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Halalkalicoccus ARCHAEAL Halalkalicoccus jeotgali B3, DSM 18796 B3, DSM 18796 CECT 7217, JCM 14584, DSM 18796, KCTC 4019 Yes Gi04608 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 413810 005499_GCAT 0 In progress 0 0 63.2 454-Titanium, Illumina USA Salted shrimp jeotgal Korea 17911300 Mesophile Halophile Free living Nonmotile Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Ornithobacterium BACTERIAL Ornithobacterium rhinotracheale DSM 15997 DSM 15997 CCUG 23171, DSM 15997, LMG 9086 Yes Gi04609 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 28251 005500_GCAT 0 In progress 0 0 0 Illumina, 454-Titanium USA Turkey, respiratory tract; United Kingdom United Kingdom 8123560 Turkey Airways Respiratory tract Microanaerobe Mesophile Free living Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas BACTERIAL Porphyromonas asaccharolytica VPI 4198, DSM 20707 VPI 4198, DSM 20707 DSM 20707, ATCC 25260 Yes Gi04610 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 28123 005501_GCAT 0 In progress 0 0 0 USA Empyema Anaerobe Mesophile Free living Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Leptospiraceae Turneriella BACTERIAL Turneriella parva H, DSM 21527 H, DSM 21527 ATCC BAA-1111, DSM 21527, NCTC 11395 Yes Gi04612 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 29510 005502_GCAT 0 In progress 0 0 0 USA contaminated culture medium 1981 Mesophile Free living Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Riemerella BACTERIAL Riemerella anatipestifer DSM 15868 DSM 15868 NCTC 11014, JCM 9532, ATCC 11845, DSM 15868, LMG 11054, CCUG 14215 Yes Gi04613 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 34085 005503_GCAT 0 In progress 0 0 0 USA Duck blood 8240957 Blood Microaerophilic Mesophile Free living Septicemia Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Paludibacter BACTERIAL Paludibacter propionicigenes WB4 WB4 CCUG 53888, JCM 13257, DSM 17365 Yes Gi04614 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 185300 005504_GCAT 0 In progress 0 0 0 USA Rice plant residue in anoxic rice-field soil in Yamagata, Japan Japan 16403864 Yamagata, Japan 38.25222 140.335602 Anaerobe Mesophile Free living Soil Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Niastella BACTERIAL Niastella koreensis GR20-10 GR20-10 KACC 11465, DSM 17620 Yes Gi04615 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 354356 005505_GCAT 0 In progress 0 0 45.8 454-Titanium, Illumina USA Soil cultivated with Korean ginseng; Yeongju region of Korea Korea 16902007 36.805686 128.624055 Mesophile Free living Soil Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Leptotrichia BACTERIAL Leptotrichia goodfellowii LB 57, DSM 19756 LB 57, DSM 19756 CCUG 32286, DSM 19756, CIP 107915 Yes Gi04616 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 157692 005506_GCAT 0 In progress 0 0 0 Illumina, 454-Titanium USA Prosthetic aortic valve; Germany Germany 15023979 Homo sapiens Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Nonmotile Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Halococcus ARCHAEAL Halococcus morrhuae LD.3.1, DSM 1307 LD.3.1, DSM 1307 ATCC 17082, NCMB 787, CCM 537, DSM 1307 Yes Gi04617 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 2250 005507_GCAT 0 In progress 0 0 0 Illumina, 454-Titanium USA Red Sea Mesophile Free living Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Spirochaeta BACTERIAL Spirochaeta coccoides SPN1, DSM 17374 SPN1, DSM 17374 DSM 17374, ATCC BAA-1237 Yes Gi04618 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Bioenergy, Tree of Life, GEBA 273376 005508_GCAT 0 In progress 0 0 0 Illumina, 454-Titanium USA Hindgut of the termite Neotermes castaneus; Cuba Cuba 16391069 Neotermes castaneus Gastrointestinal tract Gut Anaerobe Coccus-shaped Mesophile Free living Host Nonmotile Cellobiose-degrading Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Flexibacteraceae Pontibacter BACTERIAL Pontibacter actiniarum KMM 6156 KMM 6156 KMM 6156, LMG 23027, KCTC 12367, DSM 19842 Yes Gi04619 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 323450 005509_GCAT 0 In progress 0 0 48.7 454-Titanium, Illumina USA Unidentified actinians; Russia, Pacific Ocean, Rudnaya Bay Russia Aerobe Mesophile Pink gram- Free living Marine Motile Heterotroph Bacteria Bacteroidetes Bacteroidia Bacteroidales Rikenellaceae Rikenella BACTERIAL Rikenella microfusus Q-1, DSM 15922 Q-1, DSM 15922 ATCC 29728, NCTC 11190, JCM 2053, DSM 15922 Yes Gi04620 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 28139 005510_GCAT 0 In progress 0 0 48.7 Illumina, 454-Titanium USA Quail cecum Japan Obligate anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs Host Nonmotile Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Myroides BACTERIAL Myroides odoratus DSM 2801 DSM 2801 JCM 7458, IAM 14199, DSM 2801, ATCC 4651, NCTC 11036 Yes Gi04621 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 256 005511_GCAT 0 In progress 0 0 0 Illumina, 454-Titanium USA Anaerobe Mesophile Yellow gram- Free living Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides BACTERIAL Bacteroides sp. Unknown Gi04622 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 29523 005512_GCAT 137 0 Targeted 0 0 0 USA Chronic wounds Homo sapiens Skin Anaerobe Mesophile Free living Skin microflora, Host Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides BACTERIAL Bacteroides sp. Unknown Gi04623 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 29523 005513_GCAT 138 0 Targeted 0 0 0 USA Homo sapiens Skin Anaerobe Mesophile Free living Host, Skin microflora Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bartonellaceae Bartonella Bartonella sp. BACTERIAL Bartonella sp. Unknown Gi04624 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 46358 005514_GCAT 157 0 Targeted 0 0 0 USA Human with cat scratch disease Homo sapiens Patient with cat scratch disease Skin Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Bartonellosis Host Motile Pathogen Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia sp. BACTERIAL Borrelia sp. Unknown Gi04625 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 145 005515_GCAT 180 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Aerobe Spiral-shaped Mesophile gram- Free living Tick-borne relapsing fever Host Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Moraxella BACTERIAL Moraxella catarrhalis Unknown Gi04626 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 480 005516_GCAT 181 8278 0 Targeted 0 0 0 USA Airways Homo sapiens Airways Aerobe Coccus-shaped Mesophile gram- Free living Furunculosis Fresh water Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Brevibacteriaceae Brevibacterium BACTERIAL Brevibacterium epidermidis Unknown Gi04627 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1698 005517_GCAT 182 0 Targeted 0 0 0 USA Human skin sample Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Host, Skin microflora Nonmotile Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia BACTERIAL Burkholderia cepacia Unknown Gi04628 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 292 005518_GCAT 187 0 Targeted 0 0 0 USA Human airways sample Homo sapiens Airways Facultative Rod-shaped Nonsporulating Mesophile gram- Free living None Host, Rhizosphere, Rhizosphere-colonizing 30 - 42 Motile Pollutant degrader, Nitrogen fixation Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia BACTERIAL Burkholderia multivorans Unknown Gi04629 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 87883 005519_GCAT 188 0 Targeted 0 0 0 USA Homo sapiens Airways Aerobe Rod-shaped Mesophile gram- Free living Opportunistic infection Human airways, Host Nonmotile Eukaryota Ascomycota Saccharomycetes Saccharomycetales Candida EUKARYAL Candida albicans Unknown Gi04630 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 5476 005520_GCAT 194 0 Targeted 0 0 0 USA Burn wounds Homo sapiens Skin Vaginal infection, Oral infection Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Citrobacter BACTERIAL Citrobacter freundii Unknown Gi04631 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 546 005521_GCAT 206 0 Targeted 0 0 0 USA Chronic wounds Homo sapiens Skin Facultative Rod-shaped Mesophile gram- Free living Human fecal, Host, Human intestinal microflora Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae BACTERIAL Citrobacter sp. Unknown Gi04632 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 544 005522_GCAT 208 0 Targeted 0 0 0 USA Homo sapiens Airways Facultative Rod-shaped Mesophile gram- Free living Human intestinal microflora, Human fecal, Host Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae BACTERIAL Citrobacter sp. Unknown Gi04633 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 544 005523_GCAT 209 0 Targeted 0 0 0 USA Chronic wounds Homo sapiens Skin Facultative Rod-shaped Mesophile gram- Free living Human intestinal microflora, Human fecal, Host Motile Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sp. BACTERIAL Clostridium sp. Unknown Gi04634 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1506 005524_GCAT 211 0 Targeted 0 0 0 USA Chronic wounds Homo sapiens Skin Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Singles, Pairs Host Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium BACTERIAL Clostridium perfringens Unknown Gi04635 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1502 005525_GCAT 232 0 Targeted 0 0 0 USA Wounds Homo sapiens Skin Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Singles, Pairs Food poisoning, Enterocolitis, Gas gangrene, Dysenteria, Enterotoxemia Host, Soil Motile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sp. BACTERIAL Clostridium sp. Unknown Gi04636 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1506 005526_GCAT 261 0 Targeted 0 0 0 USA Wounds Homo sapiens Skin Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Host Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sp. BACTERIAL Clostridium sp. Unknown Gi04637 Genome targeted Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 1506 005527_GCAT 262 0 Targeted 0 0 0 USA Human feces Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Host Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sp. BACTERIAL Clostridium sp. Unknown Gi04638 Genome targeted Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 1506 005528_GCAT 263 0 Targeted 0 0 0 USA Human feces USA Homo sapiens Gastrointestinal tract Feces Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Singles, Pairs Host Motile Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium BACTERIAL Clostridium tertium Unknown Gi04639 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1559 005529_GCAT 267 0 Targeted 0 0 0 USA Wounds Homo sapiens Skin Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Host Motile Chemoorganotroph Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas sp. BACTERIAL Comamonas sp. Unknown Gi04640 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 34028 005530_GCAT 272 0 Targeted 0 0 0 USA Chronic wounds Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Sludge Motile Surfactant-degrading Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Propionibacterium BACTERIAL Propionibacterium acnes Unknown Gi04641 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1747 005531_GCAT 280 0 Targeted 0 0 0 USA Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Acne Host, Human skin Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium diphtheriae Unknown Gi04642 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1717 005532_GCAT 288 0 Targeted 0 0 0 USA Homo sapiens Skin Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Diphtheria, Respiratory infection Host Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium jeikeium Unknown Gi04643 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 38289 005533_GCAT 296 0 Targeted 0 0 0 USA Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host, Skin microflora 37 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium minutissimum Unknown Gi04644 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 38301 005534_GCAT 301 0 Targeted 0 0 0 USA Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host, Skin microflora 37 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium simulans Unknown Gi04645 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 146827 005535_GCAT 306 0 Targeted 0 0 0 USA Homo sapiens Skin Aerobe Mesophile gram+ Free living Skin microflora, Host Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium sp. BACTERIAL Corynebacterium sp. Unknown Gi04646 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1720 005536_GCAT 307 0 Targeted 0 0 0 USA Human skin sample Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host, Skin microflora 37 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium xerosis Unknown Gi04647 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1725 005537_GCAT 312 0 Targeted 0 0 0 USA Human skin sample Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Host, Skin microflora 37 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Cryptobacterium BACTERIAL Cryptobacterium curtum ATCC 700683 ATCC 700683 CCUG 43107, DSM 15641, ATCC 700683 Yes Gi04649 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 84163 005539_GCAT 313 0 Targeted 0 0 0 USA periodontal pocket of an adult human with periodontal disease 1995 Homo sapiens Adult Patient with periodontal disease Oral Periodontal Obligate anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Human oral microflora, Host 37 Nonmotile Bacteria Deinococcus-Thermus Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. JCVIHMP005 BACTERIAL Deinococcus sp. Unknown Gi04650 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 553166 005540_GCAT 319 0 Targeted 0 0 0 USA Human skin sample Homo sapiens Skin Aerobe Coccus-shaped Mesophile Free living None Human skin, Host Nonmotile Radiation resistant Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Dermabacteraceae Dermabacter BACTERIAL Dermabacter hominis Unknown Gi04651 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 36740 005541_GCAT 320 0 Targeted 0 0 0 USA Human skin sample Homo sapiens Skin Aerobe Coccus-shaped Mesophile Free living None Human skin, Host Nonmotile Radiation resistant Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Dialister BACTERIAL Dialister pneumosintes ATCC 33048 ATCC 33048 ATCC 33048, DSM 11619 Yes Gi04652 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 39950 005542_GCAT 328 0 Targeted 0 0 0 USA nasal passage abscess Homo sapiens Skin Nasal Anaerobe Rod-shaped Mesophile gram+ Free living Host, Oral microflora Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae BACTERIAL Dialister sp. Ghent PB008-T1-3 Ghent PB008-T1-3 Unknown Gi04653 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 39948 005543_GCAT 329 0 Targeted 0 0 0 USA Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Mesophile gram+ Free living Host, Vagina microflora Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Dietziaceae BACTERIAL Dietzia sp. Unknown Gi04654 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 37914 005544_GCAT 330 0 Targeted 0 0 0 USA Skin Homo sapiens Skin Aerobe Mesophile gram+ Free living Host, Skin microflora 28 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Enterobacter BACTERIAL Enterobacter aerogenes Unknown Gi04655 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 548 005545_GCAT 338 0 Targeted 0 0 0 USA Homo sapiens Airways Mesophile gram- Free living Host, Human airways Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis KZN 4207 KZN 4207 Mycobacterium tuberculosis KZN 4207 Gi04656 Genome incomplete Public Texas A&M Univ Medical, Human Pathogen 478433 39761 005546_GCAT 0 In progress 0 0 0 USA "Patient in KwaZulu-Natal, South Africa" South Africa Patient in KwaZulu-Natal, South Africa -28.409279 30.909119 Homo sapiens Patient Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host 37 Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Olsenella Olsenella sp. oral taxon 809 BACTERIAL Olsenella sp. Oral Taxon 809 F0356 F0356 Olsenella sp. oral taxon 809 str. F0356 Unknown Gi04658 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 661087 39743 005547_GCAT 1008 HOMD: tax_809 0 In progress 0 0 0 USA Oral Izard, Forsyth Homo sapiens Oral Anaerobe Mesophile gram+ Free living None 37 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Providencia Providencia alcalifaciens BACTERIAL Providencia alcalifaciens Ban1 Ban1 Providencia alcalifaciens Ban1 Gi04659 Genome incomplete Public J. Craig Venter Institute JCVI Medical 663916 39749 005548_GCAT 0 0 0 0 USA Human feces Human feces Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Gastroenteritis Human intestinal microflora, Host Motile Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae Ban5 Ban5 Gi04660 Genome incomplete Public J. Craig Venter Institute JCVI Medical, Human Pathogen 663915 39751 005549_GCAT 0 0 0 47.5 USA Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Cholera, Food poisoning Fresh water Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae Ind5 Ind5 Gi04661 Genome incomplete Public J. Craig Venter Institute JCVI Human Pathogen, Medical 663914 39755 005550_GCAT 0 0 0 0 USA Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Cholera, Food poisoning Fresh water Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio fluvialis BACTERIAL Vibrio fluvialis Ind1 Ind1 Gi04662 Genome incomplete Public J. Craig Venter Institute JCVI Medical, Human Pathogen 563774 39759 005551_GCAT 0 0 0 0 USA Facultative Curved-shaped Nonsporulating Mesophile gram- Free living Singles Cholera, Food poisoning Fresh water Motile Heterotroph Eukaryota Apicomplexa Coccidia Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii EUKARYAL Toxoplasma gondii TgCkUg2 TgCkUg2 Gc01072 Genome Complete and Published Public Univ of Leeds 2009-05-20 Genome Biology 10(5): R53 5811 005552_GCAT 0 Complete Level 1: Standard Draft 673878 4x 61000 0 9 0 0 Sanger, 454 USA mice from Ugandan chickens Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis KZN R506 KZN R506 Mycobacterium tuberculosis KZN R506 Gi04663 Genome incomplete Public Texas A&M Univ Medical, Human Pathogen 663886 39767 005553_GCAT 0 In progress 0 0 0 USA Clinical isolate from the KwaZulu-Natal region of South Aftrica A. Willem Sturm resistant to isoniazid, rifampicin, streptomycin, kanamycin and ofloxacin South Africa Clinical isolate from the KwaZulu-Natal region of South Aftrica -24.798703 31.435543 Homo sapiens Patient Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host 37 Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis KZN V2475 KZN V2475 Mycobacterium tuberculosis KZN V2475 Gi04664 Genome incomplete Public Texas A&M Univ Medical, Human Pathogen 663887 39765 005554_GCAT 0 In progress 0 0 0 USA Clinical isolate from the KwaZulu-Natal region of South Aftrica A. Willem Sturm resistant to isoniazid, rifampicin, and streptomycin, but not kanamycin or ofloxacin South Africa -24.798703 31.435543 Homo sapiens Patient Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Tuberculosis Host 37 Nonmotile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Pantoea BACTERIAL Enterobacter agglomerans Pantoea agglomerans Unknown Gi04665 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 549 005555_GCAT 339 0 Targeted 0 0 0 USA Burn and chronic wounds Homo sapiens Skin Mesophile gram- Free living Host Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Enterobacter BACTERIAL Enterobacter cloacae Enterobacter cloacae Unknown Gi04666 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 550 005556_GCAT 340 0 Targeted 0 0 0 USA Homo sapiens Airways Mesophile gram- Free living Host Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Enterobacter BACTERIAL Enterobacter cloacae Enterobacter cloacae Unknown Gi04667 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 550 005557_GCAT 341 0 Targeted 0 0 0 USA Burn and chronic wounds Homo sapiens Skin Mesophile gram- Free living Host Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae BACTERIAL Enterobacter sp. Unknown Gi04668 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 547 005558_GCAT 342 0 Targeted 0 0 0 USA Chronic wounds Homo sapiens Skin Mesophile gram- Free living Host Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus BACTERIAL Enterococcus avium Unknown Gi04669 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 33945 005559_GCAT 344 0 Targeted 0 0 0 USA Wounds Homo sapiens Skin Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Urinary infection, Endocarditis, Bacteremia Host Nonmotile Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus BACTERIAL Enterococcus faecalis ATCC 47077 Unknown Gi04670 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 1351 005560_GCAT 350 0 Targeted 0 0 0 USA Burn and other wounds Homo sapiens Skin Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Urinary infection, Endocarditis, Bacteremia Host Nonmotile Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus BACTERIAL Enterococcus faecium Enterococcus faecium Unknown Gi04671 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1352 005561_GCAT 353 0 Targeted 0 0 0 USA Burn wounds Homo sapiens Skin Facultative Coccus-shaped Mesophile Halotolerant gram+ Free living Chains, Pairs Opportunistic infection Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus BACTERIAL Enterococcus raffinosus Enterococcus raffinosus Unknown Gi04672 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 71452 005562_GCAT 354 0 Targeted 0 0 0 USA Human airways sample Homo sapiens Airways Facultative Coccus-shaped Mesophile Halotolerant gram+ Free living Chains, Pairs Opportunistic infection Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus sp. BACTERIAL Enterococcus sp. Enterococcus sp. Unknown Gi04673 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 35783 005563_GCAT 355 0 Targeted 0 0 0 USA Chronic wounds Homo sapiens Skin Aerobe Coccus-shaped Mesophile Halotolerant gram+ Free living Chains, Pairs Opportunistic infection Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus sp. BACTERIAL Enterococcus sp. Enterococcus sp. Unknown Gi04674 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 35783 005564_GCAT 356 0 Targeted 0 0 0 USA Chronic wounds Homo sapiens Skin Aerobe Coccus-shaped Mesophile Halotolerant gram+ Free living Chains, Pairs Opportunistic infection Wastewater Nonmotile Pathogen Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium pseudotuberculosis C231 C231 Gi04675 Genome incomplete Public Univ Federal de Minas Gerais FAPEMIG Azevedo V vasco@mono.icb.ufmg.br Medical, Animal Pathogen 1719 005565_GCAT 13411 0 Draft 2300 0 0 Brazil Facultative Rod-shaped Nonsporulating Mesophile gram+ Singles Caseous lymphadenitis Host Nonmotile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Chromatiales Chromatiaceae Thermochromatium Thermochromatium tepidum BACTERIAL Thermochromatium tepidum MC ATCC 43061 MC ATCC 43061 Thermochromatium tepidum ATCC 43061 ATCC 43061, DSM 3771 Yes Gi04677 Genome incomplete Public Arizona State Univ NSF Touchman J j.touchman@asu.edu Biotechnological 316276 005567_GCAT 7512 0 In progress 0 0 0 USA Stygian Springs, Upper Terraces, Mammoth Hot Springs, Yellowstone National Park isolated by M.T. Madigan June 1982 USA 44.376262 110.690383 Anaerobe Rod-shaped Nonsporulating Thermophile 1-2 um 2.8-3.2 um Red gram- Free living None Fresh water, Hot spring 50 Motile Nitrogen fixation, Green sulfur Photosynthetic Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Saprospiraceae Haliscomenobacter BACTERIAL Belliella baltica O, DSM 1100 O, DSM 1100 ATCC 27775, DSM 1100 Yes Gi04678 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 2350 005568_GCAT 0 In progress 0 0 0 USA sludge (activated sludge, Oss) Netherlands 51.765922 5.526464 Mesophile Free living None Sludge Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Parabacteroides BACTERIAL Parabacteroides merdae WAL 12034 WAL 12034 ATCC BAA-1180, DSM 19448, JCM 13446, CCUG 48944 Yes Gi04679 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 328812 005569_GCAT 0 In progress 0 0 43 USA Human tissue; USA USA 16145101 Obligate anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host, Human intestinal microflora, Human fecal Nonmotile Non-Pathogen Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Niabella BACTERIAL Niabella soli JS13-8 JS13-8 DSM 19437 Yes Gi04680 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 446683 005570_GCAT 0 In progress 0 0 45 USA Soil, Jeju Island, Republic of Korea Korea 18218950 Jeju Island, Republic of Korea 33.378561 126.566191 Aerobe Rod-shaped Mesophile 6 - 7 0.5 - 0.7 um 0.8 - 1;4 um Yellow gram- Free living None Soil 30 Nonmotile Eukaryota Ascomycota Sordariomycetes Diaporthales Cryphonectriaceae Cryphonectria EUKARYAL Cryphonectria parasitica SG2 SG2 Chestnut blight fungus Gr00050 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Plant Pathogen, Agricultural 5116 005571_GCAT 0 In progress 0 0 0 USA Chestnut blight Pathogen Eukaryota Labyrinthulida Thraustochytriidae Aplanochytrium Aplanochytrium kerguelense EUKARYAL Aplanochytrium kerguelense slime nets Ge00342 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 87111 005573_GCAT 0 Awaiting DNA 0 0 0 USA Bacteria Cyanobacteria Chroococcales Synechococcus Synechococcus sp. BACTERIAL Synechococcus sp. 2 1 1 Gr00051 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 1131 005574_GCAT 0 Awaiting DNA 0 0 0 USA Mesophile gram- Free living None Eukaryota Ascomycota Dothideomycetes Pleosporales Pleosporaceae Cochliobolus Cochliobolus sativus EUKARYAL Cochliobolus sativus ND90Pr ND90Pr Ge00343 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 45130 005575_GCAT 0 Awaiting DNA 0 0 0 USA None Eukaryota Peronosporales Phytophthora Phytophthora cinnamomi EUKARYAL Phytophthora cinnamomi Gi04682 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Plant Pathogen, Agricultural 4785 005576_GCAT 0 Awaiting DNA 0 0 0 USA Pathogen Eukaryota Peronosporales Phytophthora Phytophthora cinnamomi EUKARYAL Phytophthora cinnamomi Ge00344 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Plant Pathogen, Agricultural 4785 005577_GCAT 0 Awaiting DNA 0 0 0 USA Pathogen Eukaryota Chlorophyta Prasinophyceae Mamiellales Ostreococcus Ostreococcus tauri EUKARYAL Ostreococcus tauri OTH95 OTH95 Ostreococcus tauri Gr00052 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Evolutionary 70448 005578_GCAT 0 Awaiting DNA 0 0 0 USA Coccus-shaped Mesophile None Fresh water Carbon fixation, Small Photosynthetic Eukaryota Ascomycota Dothideomycetes Capnodiales Mycosphaerellaceae Cercospora Cercospora zeae-maydis EUKARYAL Cercospora zeae-maydis SC01 SC01 Ge00345 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 135779 005580_GCAT 0 Awaiting DNA 0 0 0 USA Eukaryota Ascomycota Dothideomycetes Capnodiales Mycosphaerellaceae Cercospora Cercospora zeae-maydis EUKARYAL Cercospora zeae-maydis SC01 SC01 Gi04683 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 135779 005581_GCAT 0 Awaiting DNA 0 0 0 USA Eukaryota Bacillariophyta Coscinodiscophyceae Thalassiosiraceae Cyclotella EUKARYAL Cyclotella meneghiniana Cyclotella meneghiniana Gr00054 Resequencing incomplete Public DOE Joint Genome Institute DOE 29205 005582_GCAT 0 Awaiting DNA 0 0 0 USA Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae BACTERIAL Dehalobacter sp. TPH1 TPH1 Gr00055 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 56112 005583_GCAT 0 Awaiting DNA 0 0 0 USA Eukaryota Basidiomycota Agaricomycetes Boletales Pisolithaceae Pisolithus Pisolithus microcarpus EUKARYAL Pisolithus microcarpus 441 441 Gi04684 Genome incomplete Public INRA, DOE Joint Genome Institute Martin F fmartin@nancy.inra.fr Agricultural 178872 005584_GCAT 0 Awaiting DNA 0 0 0 USA None Ectomycorrhizal Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Dekkera EUKARYAL Dekkera bruxellensis CBS 2499 CBS 2499 CBS 2499 Ge00346 Gi04686 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 5007 005586_GCAT 0 Awaiting DNA 0 0 0 USA Eukaryota Labyrinthulida Thraustochytriidae Schizochytrium Schizochytrium limacinum EUKARYAL Schizochytrium limacinum ATCC MYA-1381 ATCC MYA-1381 slime nets ATCC MYA-1381 Ge00347 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 87102 005588_GCAT 0 Awaiting DNA 0 0 0 USA seawater in mangrove area, Colonia, Yap Islands, Micronesia 9.542534 138.11013 Eukaryota Labyrinthulida Thraustochytriidae Schizochytrium Schizochytrium aggregatum EUKARYAL Schizochytrium aggregatum ATCC 28209 ATCC 28209 slime nets ATCC 28209 Gi04687 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 4773 005589_GCAT 0 Awaiting DNA 0 0 0 USA seawater, West Germany Germany Eukaryota Labyrinthulida Thraustochytriidae Schizochytrium Schizochytrium aggregatum EUKARYAL Schizochytrium aggregatum ATCC 28209 ATCC 28209 slime nets ATCC 28209 Ge00348 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 4773 005590_GCAT 0 Awaiting DNA 0 0 0 USA seawater, West Germany Germany Eukaryota Streptophyta Brassicales Brassicaceae Boechera EUKARYAL Boechera holboellii Ge00349 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 93890 005591_GCAT 0 Awaiting DNA 0 0 0 USA None Ectomycorrhizal Bacteria Cyanobacteria Chroococcales Synechococcus Synechococcus sp. BACTERIAL Synechococcus sp. 2 2 2 Gr00056 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 1131 005592_GCAT 0 Awaiting DNA 0 0 0 USA Mesophile gram- Free living None Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Dehalobacter BACTERIAL Dehalobacter restrictus PERK23 PERK23 Gr00057 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 55583 005593_GCAT 0 Awaiting DNA 0 0 0 USA Eukaryota Basidiomycota Agaricomycetes Boletales Pisolithaceae Pisolithus Pisolithus tinctorius EUKARYAL Pisolithus tinctorius Marx Marx Ge00350 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 37468 005594_GCAT 0 Awaiting DNA 0 0 0 USA None Ectomycorrhizal Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis EV76 EV76 CCUG 32133 No Gi04688 Genome incomplete Public Edgewood Chemical Biological Center Animal Pathogen, Medical, Human Pathogen, Biothreat 665028 39793 005595_GCAT 0 0 0 0 Sanger USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Bubonic and Pneumonic plague Host Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali BACTERIAL Pseudomonas syringae NCPPB3681 NCPPB3681 aesculi Pseudomonas syringae pv. aesculi str. 0893_23 ATCC 700537, NCPPB3681 No Gi04689 Genome incomplete Public The Sainsbury Laboratory Plant Pathogen, Agricultural 665027 39839 005596_GCAT 0 NZ_ACXS00000000 Draft 116x 841 5836 0 58 Illumina United Kingdom leaf spot on horse chestnut, Aesculus indica, India, 1980 1980 India Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plant rot Plants Motile Pathogen Heterotroph Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae Clostridium innocuum BACTERIAL Clostridium innocuum SB23 SB23 Gi04690 Genome incomplete Public Washington Univ WashU Medical 665134 39857 005597_GCAT 0 0 0 0 USA gnotobiotic mice colonized with an adult human gut microbiota Homo sapiens Gastrointestinal tract Anaerobe Sporulating Mesophile gram+ Pairs, Singles None Host, Human intestinal microflora Motile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium BACTERIAL Bifidobacterium dentium Unknown Gi04691 Genome targeted Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 1689 005598_GCAT 170 0 Targeted 0 0 0 USA Human oral Dewhirst Homo sapiens Oral Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Host, Vagina microflora Bacteria Firmicutes Bacilli Bacillales Planococcaceae Lysinibacillus BACTERIAL Bacillus sphaericus Unknown Gi04692 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1421 005599_GCAT 99 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Microaerophilic Rod-shaped Mesophile gram+ Free living None Host, Human skin Nonmotile Bacteria Proteobacteria Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas BACTERIAL Brevundimonas diminuta Unknown Gi04693 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 293 005600_GCAT 185 273933 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Anaerobe Rod-shaped Mesophile gram- Free living None Host, Human airways Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sp. BACTERIAL Clostridium sp. Unknown Gi04694 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1506 005601_GCAT 217 0 Targeted 0 0 0 USA skin Homo sapiens Skin Anaerobe Rod-shaped Sporulating Mesophile gram+ Free living Pairs, Singles Host, Human skin Motile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium pseudodiphtheriticum Unknown Gi04695 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 37637 005602_GCAT 304 0 Targeted 0 0 0 USA Nasal Homo sapiens Airways Nasal Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Oral infection Host, Oral microflora 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia BACTERIAL Escherichia coli Unknown Gi04696 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 562 005603_GCAT 360 270795 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human airways 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia BACTERIAL Escherichia coli Unknown Gi04697 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 562 005604_GCAT 361 270795 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human skin 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia BACTERIAL Escherichia coli Unknown Gi04698 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 562 005605_GCAT 365 270795 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human skin 37 Motile Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium BACTERIAL Eubacterium infirmum NCTC 12940 NCTC 12940 NCTC 12940, CCUG 46381, ATCC 700433 Yes Gi04699 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 56774 005606_GCAT 380 0 Targeted 0 0 40.4 USA clinical specimen - human (periodontal pocket) Homo sapiens Oral Periodontal Mesophile gram+ Free living None Host, Human oral microflora Bacteria Firmicutes Bacilli Bacillales Exiguobacterium BACTERIAL Exiguobacterium acetylicum Unknown Gi04700 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 41170 005607_GCAT 385 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Mesophile gram+ Free living Host Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum BACTERIAL Fusobacterium nucleatum animalis Fusobacterium nucleatum subsp. animalis Unknown Gi04701 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 76859 005608_GCAT 396 0 0 0 0 USA Human oral Homo sapiens Oral Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Periodontal infection Host, Oral microflora Nonmotile Pathogen Chemoorganotroph Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Flavobacterium BACTERIAL Flavobacterium sp. Unknown Gi04702 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 239 005609_GCAT 392 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Periodontitis Host Nonmotile Pathogen Chemoorganotroph Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. BACTERIAL Fusobacterium sp. Unknown Gi04703 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 68766 005610_GCAT 415 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Host, Human skin Nonmotile Bacteria Firmicutes Bacilli Bacillales BACTERIAL Gemella sp. Unknown Gi04704 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1378 005611_GCAT 418 0 0 0 0 USA Human skin Homo sapiens Skin Facultative Coccus-shaped Mesophile gram+ Free living Chains, Pairs Host, Human skin Motile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Gardnerella BACTERIAL Gardnerella vaginalis 0009-5 Hillier 0009-5 Hillier Gardnerella vaginalis BEI HM-128 Unknown Gi04705 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 2702 005612_GCAT 419 0 Targeted 0 0 0 USA Vaginal sample Homo sapiens Female Urogenital tract Vaginal Obligate anaerobe Rod-shaped Mesophile gram+ Free living Vagina microflora, Host Fastidious Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Gardnerella BACTERIAL Gardnerella vaginalis Hillier Hillier Gardnerella vaginalis BEI HM-127 Unknown Gi04707 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 2702 005614_GCAT 423 0 Targeted 0 0 0 USA Vaginal sample Homo sapiens Female Urogenital tract Vaginal Obligate anaerobe Rod-shaped Mesophile gram+ Free living Host, Vagina microflora Fastidious Bacteria Firmicutes Bacilli Bacillales Gemella BACTERIAL Gemella haemolysans Unknown Gi04708 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1379 005615_GCAT 429 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Facultative Coccus-shaped Mesophile gram+ Free living Chains, Pairs Host, Human airways Motile Bacteria Firmicutes Bacilli Bacillales Gemella BACTERIAL Gemella haemolysans Unknown Gi04709 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 1379 005616_GCAT 430 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Facultative Coccus-shaped Mesophile gram+ Free living Pairs, Chains Host, Human airways Motile Bacteria Firmicutes Bacilli Bacillales Gemella BACTERIAL Gemella morbillorum Unknown Gi04710 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 29391 005617_GCAT 431 0 Targeted 0 0 0 USA Human vaginal flora Homo sapiens Female Urogenital tract Vaginal Facultative Coccus-shaped Mesophile gram+ Free living Chains, Pairs Host, Human airways Motile Bacteria Firmicutes Bacilli Bacillales Gemella BACTERIAL Gemella sanguinis Unknown Gi04711 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 84135 005618_GCAT 434 0 Targeted 0 0 0 USA Human airways sample Homo sapiens Airways Facultative Coccus-shaped Mesophile gram+ Free living Chains, Pairs Host, Human airways Motile Bacteria Firmicutes Bacilli Bacillales Gemella BACTERIAL Gemella sanguinis Unknown Gi04712 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 84135 005619_GCAT 435 0 Targeted 0 0 0 USA Human airways sample Homo sapiens Airways Facultative Coccus-shaped Mesophile gram+ Free living Chains, Pairs Host, Human airways Motile Bacteria Firmicutes Bacilli Bacillales BACTERIAL Gemella sp. Unknown Gi04713 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1378 005620_GCAT 437 0 Targeted 0 0 0 USA Human airways sample Homo sapiens Airways Facultative Coccus-shaped Mesophile gram+ Free living Chains, Pairs Host, Human airways Motile Bacteria Firmicutes Bacilli Bacillales BACTERIAL Gemella sp. Unknown Gi04714 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1378 005621_GCAT 438 0 Targeted 0 0 0 USA Human airways sample Homo sapiens Airways Facultative Coccus-shaped Mesophile gram+ Free living Chains, Pairs Host, Human airways Motile Bacteria Firmicutes Bacilli Bacillales Bacillaceae BACTERIAL Geobacillus sp. Unknown Gi04715 Genome targeted Public DOE Medical, Human Microbiome Project (HMP) 129337 005622_GCAT 440 0 Targeted 0 0 0 USA Chronic wounds Homo sapiens Chronic wounds Skin Anaerobe Rod-shaped Sporulating Thermophile gram+ Free living None Host, Human skin Motile Bacteria Firmicutes Bacilli Lactobacillales Carnobacteriaceae Granulicatella BACTERIAL Granulicatella adiacens Unknown Gi04716 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 46124 005623_GCAT 445 0 Targeted 0 0 0 USA Human airways sample Homo sapiens Airways Mesophile gram+ Free living Host, Human airways Bacteria Firmicutes Bacilli Lactobacillales Carnobacteriaceae BACTERIAL Granulicatella sp. Unknown Gi04717 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 117563 005624_GCAT 449 0 Targeted 0 0 0 USA Human airways sample Homo sapiens Airways Mesophile gram+ Free living Host, Human airways Bacteria Firmicutes Bacilli Lactobacillales Carnobacteriaceae Granulicatella BACTERIAL Granulicatella para-adiacens Unknown Gi04718 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 321195 005625_GCAT 448 0 Targeted 0 0 0 USA Human airways sample Homo sapiens Airways Mesophile gram+ Free living Host, Human airways Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus BACTERIAL Haemophilus influenzae Unknown Gi04719 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 727 005626_GCAT 451 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Facultative Rod-shaped Mesophile gram- Free living Host, Human airways Nonmotile Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus BACTERIAL Haemophilus influenzae Unknown Gi04720 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 727 005627_GCAT 452 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Pharyngeal mucosa Facultative Rod-shaped Mesophile gram- Free living Host, Human airways Nonmotile Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus sp. BACTERIAL Haemophilus sp. Unknown Gi04721 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 740 005628_GCAT 453 0 Targeted 0 0 0 USA Wounds Homo sapiens Skin Facultative Rod-shaped Mesophile gram- Free living Host, Human skin Nonmotile Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Rhodospirillaceae Inquilinus BACTERIAL Inquilinus limosus Unknown Gi04722 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 171674 005629_GCAT 472 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Facultative Rod-shaped Mesophile gram- Free living Host, Human airways Nonmotile Bacteria Proteobacteria Betaproteobacteria Burkholderiales Oxalobacteraceae BACTERIAL Janthinobacterium sp. Unknown Gi04723 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 29580 005630_GCAT 474 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Facultative Rod-shaped Mesophile gram- Free living Host, Human skin Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Kingella BACTERIAL Kingella denitrificans Unknown Gi04724 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 502 005631_GCAT 475 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Mesophile gram- Free living None Host, Human skin Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Klebsiella BACTERIAL Klebsiella oxytoca Unknown Gi04725 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 571 005632_GCAT 478 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Mesophile gram- Free living None Host, Human airways Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Klebsiella BACTERIAL Klebsiella oxytoca Unknown Gi04726 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 571 005633_GCAT 479 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Mesophile gram- Free living None Host, Human airways Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Klebsiella BACTERIAL Klebsiella oxytoca Unknown Gi04727 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 571 005634_GCAT 480 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Mesophile gram- Free living None Host, Human skin Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Klebsiella Klebsiella pneumoniae BACTERIAL Klebsiella pneumoniae ozaenae Klebsiella pneumoniae subsp. ozaenae Unknown Gi04728 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 574 005635_GCAT 481 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Mesophile gram- Free living None Host, Human airways Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Klebsiella BACTERIAL Klebsiella pneumoniae Unknown Gi04729 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 573 005636_GCAT 482 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Mesophile gram- Free living None Host, Human airways Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Klebsiella BACTERIAL Klebsiella pneumoniae Unknown Gi04730 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 573 005637_GCAT 483 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Mesophile gram- Free living None Host, Human skin Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Klebsiella Klebsiella sp. BACTERIAL Klebsiella sp. Unknown Gi04731 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 576 005638_GCAT 486 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Mesophile gram- Free living None Host, Human skin Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus casei Unknown Gi04732 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1582 005639_GCAT 500 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Facultative Rod-shaped Mesophile gram+ Free living Chains None Host 30 - 40 Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus iners Hillier Hillier BEI HM-126 Unknown Gi04733 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 147802 005640_GCAT 522 0 Targeted 0 0 0 USA Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Host, Human vaginal microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus iners Hillier Hillier BEI HM-131 Unknown Gi04734 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 147802 005641_GCAT 523 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Host, Human vaginal microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus rhamnosus Unknown Gi04735 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 47715 005642_GCAT 540 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Facultative Rod-shaped Mesophile gram- Free living None Host, Human airways Nonmotile Eukaryota Basidiomycota Malasseziales Malassezia EUKARYAL Malassezia sp. Unknown Gi04737 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 55193 005643_GCAT 559 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Mesophile Free living Human skin, Host Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Megasphaera BACTERIAL Megasphaera micronuciformis W60807 W60807 Unknown Gi04738 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 187326 005644_GCAT 562 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Mesophile gram+ Host, Human oral microflora Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter ARCHAEAL Methanobrevibacter oralis DSM 7256 DSM 7256 Methanobrevibacter smithii DSM 2374 DSM 7256 Yes Gi04739 Genome targeted Public NIH-NHGRI Medical, Human Microbiome Project (HMP) 66851 005645_GCAT 563 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Rod-shaped Mesophile gram+ Free living Chains, Pairs None Human oral microflora, Host 37 - 40 Nonmotile Bacteria Proteobacteria Betaproteobacteria Methylophilales Methylophilaceae Methylophilus Methylophilus sp. BACTERIAL Methylophilus sp. Unknown Gi04740 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 29541 005646_GCAT 567 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Rod-shaped Mesophile gram+ Free living Chains, Pairs None Host, Human skin 37 - 40 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micrococcaceae Kocuria BACTERIAL Micrococcus varians Kocuria varians Unknown Gi04741 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1272 005647_GCAT 570 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Aerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Tetrads Human skin, Host Nonmotile Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis BACTERIAL Parvimonas micra Hillier Hillier Unknown Gi04742 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 33033 005648_GCAT 571 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human vaginal microflora Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Mobiluncus BACTERIAL Mobiluncus mulieris Unknown Gi04743 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 2052 005649_GCAT 579 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Rod-shaped Mesophile gram+ Free living Host, Human skin Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XIII. Incertae Sedis Mogibacterium BACTERIAL Mogibacterium timidum ATCC 33093 ATCC 33093 ATCC 33093 Yes Gi04744 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 35519 005650_GCAT 581 0 Targeted 0 0 0 454, Sanger USA Human oral cavity Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Oral microflora, Host Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Moraxella BACTERIAL Moraxella catarrhalis Unknown Gi04745 Genome targeted Proprietary NIH Medical, Human Microbiome Project (HMP) 480 005651_GCAT 582 0 Targeted 0 0 0 USA Homo sapiens Airways Nasal Aerobe Coccus-shaped Mesophile gram- Free living Host, Human airways Nonmotile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Morganella BACTERIAL Morganella morganii Unknown Gi04746 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 582 005652_GCAT 584 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Aerobe Coccus-shaped Mesophile gram- Free living Human airways, Host Nonmotile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Morganella BACTERIAL Morganella morganii Unknown Gi04747 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 582 005653_GCAT 585 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Aerobe Coccus-shaped Mesophile gram- Free living Human skin, Host Nonmotile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae BACTERIAL Morganella sp. Unknown Gi04748 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 581 005654_GCAT 586 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Aerobe Coccus-shaped Mesophile gram- Free living Human skin, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium leprae Unknown Gi04751 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1769 005657_GCAT 587 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Human skin, Host, Skin microflora 37 Nonmotile Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium sp. BACTERIAL Mycobacterium sp. Unknown Gi04749 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1785 005655_GCAT 588 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles None Host, Human airways Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium sp. BACTERIAL Mycobacterium sp. Unknown Gi04750 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1785 005656_GCAT 589 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles None Human skin, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tuberculosis Unknown Gi04752 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1773 005658_GCAT 590 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles None Host, Human skin Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria elongata BACTERIAL Neisseria elongata glycolytica Neisseria elongata subsp. glycolytica Unknown Gi04753 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 88719 005659_GCAT 597 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs None Host, Human airways Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria BACTERIAL Neisseria mucosa Unknown Gi04754 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 488 005660_GCAT 605 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs None Human oral microflora, Host Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria sp. BACTERIAL Neisseria sp. Unknown Gi04755 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 192066 005661_GCAT 608 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs None Host, Human airways Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria sp. BACTERIAL Neisseria sp. Unknown Gi04756 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 192066 005662_GCAT 609 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs None Host, Human airways Nonmotile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali BACTERIAL Pseudomonas syringae aesculi Pseudomonas syringae pv. aesculi Gi04757 Genome incomplete Public The Sainsbury Laboratory Plant Pathogen, Agricultural 251722 39843 005663_GCAT 0 0 0 0 United Kingdom causes bleeding canker disease on Horse Chestnut trees in the UK. Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plants Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli B354 B354 Gi04758 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 550677 38917 005664_GCAT 0 0 0 0 USA Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs None Host 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli B185 B185 Gi04759 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 550676 38915 005665_GCAT 0 0 0 0 USA Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli B088 B088 Gi04760 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 550672 38905 005666_GCAT 0 0 0 0 USA Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host 37 Motile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Nocardiaceae Nocardia Nocardia sp. BACTERIAL Nocardia sp. Unknown Gi04761 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1821 005667_GCAT 611 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Mesophile gram+ None Host, Human airways Bacteria Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus BACTERIAL Paenibacillus glucanolyticus Unknown Gi04762 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 59843 005668_GCAT 616 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Host, Human oral microflora Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurella BACTERIAL Pasteurella multocida Unknown Gi04763 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 747 005669_GCAT 622 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Mesophile gram- Free living Host, Human airways Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Peptococcus BACTERIAL Peptococcus niger Unknown Gi04764 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 2741 005670_GCAT 624 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Mesophile gram- Free living Host, Human skin Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae BACTERIAL Peptococcus sp. Unknown Gi04765 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 2740 005671_GCAT 625 0 Targeted 0 0 0 USA Human oral sample Homo sapiens Oral Mesophile gram- Free living Host, Human oral microflora Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Peptoniphilus BACTERIAL Peptoniphilus asaccharolyticus Onderdonk Onderdonk Unknown Gi04766 Genome targeted Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 1258 005672_GCAT 626 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Mesophile gram+ Free living None Human vaginal microflora, Host 37 Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Peptoniphilus BACTERIAL Peptoniphilus ivorii Unknown Gi04767 Genome targeted Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Human Microbiome Project (HMP), Medical 54006 005673_GCAT 627 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Mesophile gram+ Free living None Human skin, Host 37 Bacteria Firmicutes Clostridia Clostridiales Peptostreptococcaceae Peptostreptococcus Peptostreptococcus sp. BACTERIAL Peptostreptococcus sp. 2 Unknown Gi04768 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1262 005674_GCAT 633 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human skin Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas BACTERIAL Porphyromonas somerae Unknown Gi04769 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 322095 005675_GCAT 639 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Mesophile gram- Free living Host, Human skin Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae BACTERIAL Porphyromonas sp. Unknown Gi04770 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 836 005676_GCAT 640 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Mesophile gram- Free living Host, Human skin Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas BACTERIAL Porphyromonas uenonis Unknown Gi04771 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 281920 005677_GCAT 642 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Mesophile gram- Free living Host, Human skin Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella nigrescens F0013 F0013 Unknown Gi04772 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 28133 005678_GCAT 662 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella oralis Unknown Gi04773 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 28134 005679_GCAT 664 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human skin Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. BACTERIAL Prevotella sp. Unknown Gi04774 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 59823 005680_GCAT 671 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human skin Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. BACTERIAL Prevotella sp. Unknown Gi04775 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 59823 005681_GCAT 672 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human skin Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Propionibacterium BACTERIAL Propionibacterium avidum Unknown Gi04776 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 33010 005682_GCAT 676 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Opportunistic infection Host, Human skin Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae BACTERIAL Propionibacterium sp. Unknown Gi04777 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1743 005683_GCAT 680 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Opportunistic infection Host, Human skin Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae BACTERIAL Propionibacterium sp. Unknown Gi04778 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1743 005684_GCAT 681 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Opportunistic infection Host, Human skin Nonmotile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Proteus BACTERIAL Proteus mirabilis Unknown Gi04779 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 584 005685_GCAT 694 0 Targeted 0 0 0 Sanger, Illumina, 454-FLX USA Human airways Homo sapiens Airways Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human airways Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Proteus BACTERIAL Proteus mirabilis Unknown Gi04780 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 584 005686_GCAT 695 0 Targeted 0 0 0 Sanger, Illumina, 454-FLX USA Human airways Homo sapiens Skin Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human skin Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Proteus Proteus sp. BACTERIAL Proteus sp. Unknown Gi04781 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 229037 005687_GCAT 697 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human skin Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Proteus BACTERIAL Proteus vulgaris Unknown Gi04782 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 585 005688_GCAT 698 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human skin Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Providencia BACTERIAL Providencia stuartii Unknown Gi04783 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 588 005689_GCAT 703 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Gastroenteritis Host, Human skin Motile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas BACTERIAL Pseudomonas aeruginosa Unknown Gi04785 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 287 005691_GCAT 705 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Mesophile Free living Host, Human airways Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas BACTERIAL Pseudomonas aeruginosa Unknown Gi04786 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 287 005692_GCAT 706 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Mesophile Free living Host, Human airways Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas BACTERIAL Pseudomonas aeruginosa Unknown Gi04787 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 287 005693_GCAT 707 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Mesophile Free living Host, Human skin Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas BACTERIAL Pseudomonas fluorescens Unknown Gi04788 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 294 005694_GCAT 708 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Host, Human skin Motile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas BACTERIAL Pseudomonas fluorescens Unknown Gi04789 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 294 005695_GCAT 709 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Host, Human airways Motile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas BACTERIAL Pseudomonas mendocina Unknown Gi04790 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 300 005696_GCAT 711 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Host, Human airways Motile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas BACTERIAL Pseudomonas poae Unknown Gi04791 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 200451 005697_GCAT 712 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Host, Human skin Motile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas BACTERIAL Pseudomonas putida Unknown Gi04792 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 303 005698_GCAT 713 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Host, Human airways Motile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas BACTERIAL Pseudomonas putida Unknown Gi04793 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 303 005699_GCAT 714 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Host, Human skin Motile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp BACTERIAL Pseudomonas sp. Unknown Gi04794 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 660256 005700_GCAT 715 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Host, Human airways Motile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp BACTERIAL Pseudomonas sp. Unknown Gi04795 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 660256 005701_GCAT 716 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Host, Human airways Motile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp BACTERIAL Pseudomonas sp. Unknown Gi04796 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 660256 005702_GCAT 717 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Host, Human airways Motile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp BACTERIAL Pseudomonas sp. Unknown Gi04797 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 660256 005703_GCAT 718 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Host, Human skin Motile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas BACTERIAL Pseudomonas stutzeri Unknown Gi04798 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 316 005704_GCAT 719 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Host, Human airways Motile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas BACTERIAL Pseudomonas stutzeri Unknown Gi04799 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 316 005705_GCAT 720 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Host, Human skin Motile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micrococcaceae BACTERIAL Rothia sp. F0184 F0184 Unknown Gi04800 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 32207 005706_GCAT 742 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Coccus-shaped Mesophile gram+ Free living Host, Human oral microflora Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micrococcaceae BACTERIAL Rothia sp. F0184 F0184 Unknown Gi04801 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 32207 005707_GCAT 744 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Coccus-shaped Mesophile gram+ Free living Host, Human airways Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Micrococcaceae BACTERIAL Rothia sp. F0184 F0184 Unknown Gi04802 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 32207 005708_GCAT 743 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Coccus-shaped Mesophile gram+ Free living Host, Human airways Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Serratia BACTERIAL Serratia marcescens Unknown Gi04803 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 615 005709_GCAT 756 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Facultative Rod-shaped Mesophile gram- Free living Host, Human airways Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Serratia BACTERIAL Serratia marcescens Unknown Gi04804 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 615 005710_GCAT 757 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Facultative Rod-shaped Mesophile gram- Free living Host, Human skin Motile Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae Solobacterium BACTERIAL Solobacterium moorei Unknown Gi04805 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 102148 005711_GCAT 764 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Mesophile Free living Host, Human skin Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus Staphylococcus aureus subsp. aureus Unknown Gi04806 Genome targeted Public NIH Human Microbiome Project (HMP), Medical, Human Pathogen 46170 005712_GCAT 778 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Host, Human airways 30 - 37 Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus Staphylococcus aureus subsp. aureus Unknown Gi04807 Genome targeted Public NIH Human Microbiome Project (HMP), Medical, Human Pathogen 46170 005713_GCAT 779 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Nasal Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Singles, Clusters Host, Human airways 30 - 37 Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus Staphylococcus aureus subsp. aureus Unknown Gi04808 Genome targeted Public NIH Human Microbiome Project (HMP), Human Pathogen, Medical 46170 005714_GCAT 780 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Host, Human skin 30 - 37 Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus Staphylococcus aureus subsp. aureus Unknown Gi04809 Genome targeted Public NIH Human Microbiome Project (HMP), Medical, Human Pathogen 46170 005715_GCAT 781 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Host, Human skin 30 - 37 Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus ATCC 51811 ATCC 51811 Staphylococcus aureus subsp. aureus ATCC 51811 No Gi04810 Genome incomplete Public BCM-HGSC NIH Human Microbiome Project (HMP), Medical, Human Pathogen 46170 005716_GCAT 782 0 0 0 0 USA Human airways Homo sapiens Airways Nasal Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Host, Human airways 30 - 37 Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus ATCC BAA-39 ATCC BAA-39 Staphylococcus aureus subsp. aureus ATCC BAA-39 No Gi04811 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrainsjcvi@bcm.edu Human Microbiome Project (HMP), Medical, Human Pathogen 46170 005717_GCAT 783 0 In progress 0 0 0 USA Human airways 1993 Hungary Homo sapiens Airways Nasal Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Human airways, Host 30 - 37 Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus epidermidis Staphylococcus epidermidis Unknown Gi04812 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1282 005718_GCAT 795 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Singles, Clusters Septicemia, Pneumonia Host, Human airways 30 - 37 Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus epidermidis Staphylococcus epidermidis Unknown Gi04813 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1282 005719_GCAT 796 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Nasal Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Septicemia, Pneumonia Host, Human airways 30 - 37 Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus lugdunensis Staphylococcus lugdunensis Unknown Gi04814 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 28035 005720_GCAT 800 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Host, Human skin 30 - 37 Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus pasteuri Staphylococcus pasteuri Unknown Gi04815 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 45972 005721_GCAT 801 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Host, Human airways 30 - 37 Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus pasteuri Staphylococcus pasteuri Unknown Gi04816 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 45972 005722_GCAT 802 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Singles, Clusters Host, Human skin 30 - 37 Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus sp. BACTERIAL Staphylococcus sp. Unknown Gi04817 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 29387 005723_GCAT 803 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Host, Human airways 30 - 37 Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus sp. BACTERIAL Staphylococcus sp. Unknown Gi04818 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 29387 005724_GCAT 804 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Host, Human airways 30 - 37 Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus sp. BACTERIAL Staphylococcus sp. Unknown Gi04819 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 29387 005725_GCAT 805 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Host, Human skin 30 - 37 Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus sp. BACTERIAL Staphylococcus sp. Unknown Gi04820 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 29387 005726_GCAT 806 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Host, Human skin 30 - 37 Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus warneri Unknown Gi04821 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1292 005727_GCAT 807 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Host, Human airways 30 - 37 Nonmotile Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Stenotrophomonas BACTERIAL Stenotrophomonas maltophilia Stenotrophomonas maltophilia Unknown Gi04822 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 40324 005728_GCAT 809 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Aerobe Rod-shaped Mesophile gram- Free living None Host, Human skin Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Stenotrophomonas Stenotrophomonas sp. BACTERIAL Stenotrophomonas sp. Stenotrophomonas sp. Unknown Gi04823 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 69392 005729_GCAT 810 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Aerobe Rod-shaped Mesophile gram- Free living None Host, Human skin Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Stenotrophomonas BACTERIAL Stenotrophomonas maltophilia Stenotrophomonas maltophilia Unknown Gi04824 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 40324 005730_GCAT 811 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Aerobe Rod-shaped Mesophile gram- Free living None Host, Human airways Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus agalactiae Unknown Gi04825 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1311 005731_GCAT 812 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human skin Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus anginosus Unknown Gi04826 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1328 005732_GCAT 813 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human airways Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus anginosus Unknown Gi04827 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1328 005733_GCAT 814 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human airways Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus constellatus Unknown Gi04828 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 76860 005734_GCAT 815 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Anaerobe Coccus-shaped Mesophile gram+ Free living Human airways, Host Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus constellatus Unknown Gi04829 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 76860 005735_GCAT 816 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Anaerobe Coccus-shaped Mesophile gram+ Free living Human airways, Host Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus cristatus Unknown Gi04830 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 45634 005736_GCAT 817 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Anaerobe Coccus-shaped Mesophile gram+ Free living Human airways, Host Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus dysgalactiae Unknown Gi04831 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1334 005737_GCAT 818 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human skin Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus gordonii Unknown Gi04832 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1302 005738_GCAT 820 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Anaerobe Coccus-shaped Mesophile gram+ Free living Human airways, Host Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus infantis Unknown Gi04833 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 68892 005739_GCAT 822 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Anaerobe Coccus-shaped Mesophile gram+ Free living Human airways, Host Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus intermedius Unknown Gi04834 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1338 005740_GCAT 823 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Anaerobe Coccus-shaped Mesophile gram+ Free living Human airways, Host Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus intermedius Unknown Gi04835 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1338 005741_GCAT 824 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Anaerobe Coccus-shaped Mesophile gram+ Free living Human airways, Host Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus intermedius Unknown Gi04836 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1338 005742_GCAT 825 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Coccus-shaped Mesophile gram+ Free living Human skin, Host, Skin microflora Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus massiliensis Unknown Gi04837 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 313439 005743_GCAT 826 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Anaerobe Coccus-shaped Mesophile gram+ Free living Human airways, Host Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus milleri Unknown Gi04838 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 33040 005744_GCAT 827 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Anaerobe Coccus-shaped Mesophile gram+ Free living Human airways, Host Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus mitis Unknown Gi04839 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 28037 005745_GCAT 828 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human airways Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus mutans Unknown Gi04840 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1309 005746_GCAT 830 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human airways Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus oralis Unknown Gi04841 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1303 005747_GCAT 832 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human airways Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus parasanguinis Unknown Gi04842 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1318 005748_GCAT 834 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human airways Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus pneumoniae Unknown Gi04843 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1313 005749_GCAT 838 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human skin Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus pyogenes Unknown Gi04844 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1314 005750_GCAT 842 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human airways Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus pyogenes Unknown Gi04845 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1314 005751_GCAT 843 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human skin Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus salivarius Unknown Gi04846 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1304 005752_GCAT 844 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human airways Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus sanguinis Unknown Gi04847 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1305 005753_GCAT 846 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human airways Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus sp. Streptococcus sp. Unknown Gi04848 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1306 005754_GCAT 852 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human airways Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus sp. Unknown Gi04849 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1306 005755_GCAT 853 0 Targeted 0 0 0 USA Human airways Homo sapiens Airways Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human airways Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus sp. Unknown Gi04850 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1306 005756_GCAT 854 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human skin Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus sp. group A Streptococcus sp. 'group A' Unknown Gi04851 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 36470 005757_GCAT 855 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human skin Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus sp. group B Streptococcus sp. 'group B' Unknown Gi04852 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1319 005758_GCAT 856 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human skin Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Veillonella BACTERIAL Veillonella montpellierensis Unknown Gi04854 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 187328 005760_GCAT 872 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Host, Human vaginal microflora 37 Nonmotile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae BACTERIAL Veillonella sp. Unknown Gi04855 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 29465 005761_GCAT 875 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Host, Human skin 37 Nonmotile Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas sp. BACTERIAL Xanthomonas sp. Unknown Gi04856 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 29446 31215 005762_GCAT 878 0 Targeted 0 0 0 Sanger USA Human skin Homo sapiens Skin Aerobe Rod-shaped Mesophile gram- Free living Host, Human skin Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Yersinia BACTERIAL Yersinia aldovae Unknown Gi04857 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 29483 005763_GCAT 879 39860 0 Targeted 0 0 0 USA Human skin Homo sapiens Skin Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Host, Human skin Motile Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali BACTERIAL Pseudomonas syringae 2250 2250 aesculi Pseudomonas syringae pv. aesculi str. 2250 Gi04858 Genome incomplete Public The Sainsbury Laboratory Plant Pathogen, Agricultural 666475 39921 005764_GCAT 0 NZ_ACXT00000000 Draft 100x 776 5926 0 58 United Kingdom Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plant rot Plants Motile Pathogen Heterotroph Eukaryota Ascomycota Saccharomycetes Saccharomycetales Spathaspora Spathaspora passalidarum EUKARYAL Spathaspora babjevae NRRL Y-27907 NRRL Y-27907 Gi04859 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 619300 005765_GCAT 0 0 0 2 0 USA Eukaryota Kickxellales Kickxellaceae Coemansia Coemansia reversa EUKARYAL Coemansia reversa NRRL 1564 NRRL 1564 Gi04861 Genome targeted Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 61392 005767_GCAT 0 0 0 2 0 USA Eukaryota Entomophthorales Ancylistaceae Conidiobolus EUKARYAL Conidiobolus coronatus NRRL28638 NRRL28638 Gi04862 Genome targeted Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 34488 005768_GCAT 0 0 0 2 0 USA Eukaryota Chytridiomycota Monoblepharidomycetes Monoblepharidales Gonapodyaceae Gonapodya Gonapodya sp. JEL183 EUKARYAL Gonapodya sp. JEL183 JEL183 Gi04863 Genome targeted Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 109955 005769_GCAT 0 0 0 2 0 USA Eukaryota Basidiomycota Wallemiomycetes Wallemiales Wallemia Wallemia sebi EUKARYAL Wallemia sebi Gi04865 Genome targeted Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 148960 005771_GCAT 0 0 0 2 0 USA Eukaryota Ascomycota Orbiliomycetes Orbiliales Orbiliaceae Orbilia Orbilia auricolor EUKARYAL Orbilia auricolor Gi04864 Genome targeted Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 53381 005770_GCAT 0 0 0 2 0 USA Eukaryota Labyrinthulida Thraustochytriidae EUKARYAL Aurantiochytrium limacinum ATCC MYA-1381 ATCC MYA-1381 ATCC MYA-1381 Gi04866 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 420535 005772_GCAT 0 Awaiting DNA 0 0 0 USA Eukaryota Labyrinthulida Thraustochytriidae EUKARYAL Aurantiochytrium limacinum ATCC MYA-1381 ATCC MYA-1381 ATCC MYA-1381 Ge00351 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 420535 005773_GCAT 0 Awaiting DNA 0 0 0 USA Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Desulfitobacterium BACTERIAL Desulfitobacterium dehalogenans ATTC 51507 ATTC 51507 ATTC 51507 Gi04867 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 36854 005774_GCAT 0 Awaiting DNA 0 0 0 Sanger USA Anaerobe Rod-shaped Sporulating Mesophile gram- Free living Chains, Pairs, Singles None Host Motile Bacteria Cyanobacteria Chroococcales Synechocystis BACTERIAL Synechocystis sp. PCC6803 PCC6803 Synechocystis sp. PCC 6803 ATCC 27184, PCC6803 Gt00004 Transcriptome incomplete Public DOE Joint Genome Institute DOE Mavrommatis K KMavrommatis@lbl.gov Biotechnological, Ocean carbon cycle, Environmental 1148 005775_GCAT 123875 137040 0 Awaiting DNA 0 0 0 Japan Freshwater lake in 1968 1968 Freshwater lake in 1968 Facultative Coccus-shaped Mesophile gram- Free living None Fresh water, Fresh water Motile Photoautotroph, Photosynthetic Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema Treponema pallidum BACTERIAL Treponema pallidum pallidum Chicago Chicago Treponema pallidum subsp. pallidum str. Nichols Gi04868 Genome incomplete Public BCM-HGSC NIH-NIAID Weinstock G gweinsto@watson.wustl.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Medical, Human Pathogen 666714 39981 005776_GCAT 0 0 0 0 USA Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Host Motile Pathogen Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Pediococcus BACTERIAL Pediococcus claussenii P06, ATCC BAA-344 P06, ATCC BAA-344 ATCC BAA-344, DSM 14800, KCTC 3811 Yes Gi04871 Genome complete Public Univ of Saskatchewan Ziola B b.ziola@usask.ca 187452 005779_GCAT 0 Complete 1825 0 0 Canada fermented beverages Homo sapiens Gastrointestinal tract Feces Aerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Host Nonmotile Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Desulfotomaculum BACTERIAL Desulfotomaculum hydrothermale Gi04872 Genome incomplete Public Genoscope 412895 005781_GCAT 0 0 0 0 France Hot spring in North East Tunisia Obligate anaerobe Rod-shaped Sporulating Thermophile gram+ Free living None Sea water, Mud, Animal intestinal microflora, Fresh water, Soil 37 Motile Sulfate reducer Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Geodermatophilaceae Blastococcus BACTERIAL Blastococcus saxobsidens DD2 DD2 Gi04874 Genome incomplete Public Genoscope Barbe V vbarbe@genoscope.cns.fr 138336 005783_GCAT 0 0 0 0 France Bacteria Proteobacteria Gammaproteobacteria Methylococcales Methylococcaceae Methylobacter BACTERIAL Methylobacter alcaliphilus 20Z 20Z Gi04875 Genome incomplete Public Genoscope Barbe V vbarbe@genoscope.cns.fr Biotechnological 95640 005784_GCAT 0 0 0 0 France Aerobe Rod-shaped Nonsporulating Mesophile Halotolerant gram- Free living Pairs, Singles None 25 - 30 Motile Methylotroph Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus smithii BACTERIAL Bacillus smithii 7_3_47FAA 7_3_47FAA Unknown Gi04876 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu ACWF Medical, Human Microbiome Project (HMP) 665952 40007 005785_GCAT 1015 0 Awaiting DNA 0 0 0 USA Human gastrointestinal tract Homo sapiens Gastrointestinal tract Sporulating Mesophile gram+ Free living Human intestinal microflora, Host Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus sp. 7_6_55CFAA_CT2 BACTERIAL Bacillus sp. 7_6_55CFAA_CT2 7_6_55CFAA_CT2 Unknown Gi04877 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 665957 40005 005786_GCAT 1014 0 Awaiting DNA 0 0 0 USA Emma Allen-Vercoe, U. Guelph, Canada Homo sapiens Sporulating Mesophile gram+ Free living Human intestinal microflora, Host Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus sp. BT1B_CT2 BACTERIAL Bacillus sp. BT1B_CT2 BT1B_CT2 Unknown Gi04878 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu ACWC Medical, Human Microbiome Project (HMP) 665958 40001 005787_GCAT 1012 0 Awaiting DNA 0 0 0 USA Human gastrointestinal tract Homo sapiens Gastrointestinal tract Sporulating Mesophile gram+ Free living Host, Human intestinal microflora Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Anaerostipes Anaerostipes sp. 3_2_56FAA BACTERIAL Anaerostipes sp. 3_2_56FAA 3_2_56FAA Unknown Gi04879 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu ACWB Medical, Human Microbiome Project (HMP) 665937 39999 005788_GCAT 1011 0 Awaiting DNA 0 0 0 USA Human gastrointestinal tract Homo sapiens Gastrointestinal tract Anaerobe Rod-shaped Mesophile gram+ Free living None Human intestinal microflora, Host Non-Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes sp. 3_1_57FAA_CT2 BACTERIAL Alistipes sp. 3_1_57FAA_CT2 3_1_57FAA_CT2 Unknown Gi04881 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/seq/msc/ Medical, Human Microbiome Project (HMP) 665935 39995 005790_GCAT 1009 0 Awaiting DNA 0 0 0 454-FLX, Sanger USA Human gastrointestinal tract Homo sapiens Gastrointestinal tract Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human intestinal microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces BACTERIAL Actinomyces georgiae D124H-11 D124H-11 Unknown Gi04882 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 52768 005791_GCAT 9031 HOMD: tax_id 617 0 Targeted 0 0 0 454, Sanger USA Human oral cavity Homo sapiens Oral Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Host, Human oral microflora Nonmotile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli FVEC1302 FVEC1302 Gi04884 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 656379 39915 005793_GCAT 0 In progress 0 0 0 USA Bacteria Bacteroidetes Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes sp. 3_1_57FAA_CT2 BACTERIAL Alistipes sp. 1_3_51FAA 1_3_51FAA Unknown Gi04885 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/seq/msc/ ACWA Medical, Human Microbiome Project (HMP) 665935 39997 005794_GCAT 1010 0 Awaiting DNA 0 0 0 454-FLX, Sanger USA Human gastrointestinal tract Homo sapiens Gastrointestinal tract Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human intestinal microflora Nonmotile Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus sp. 2_A_57_CT2 BACTERIAL Bacillus sp. 2_A_57_CT2 2_A_57_CT2 Unknown Gi04886 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu ACWD Medical, Human Microbiome Project (HMP) 665959 40003 005795_GCAT 1013 0 Awaiting DNA 0 0 0 USA Human oral cavity Homo sapiens Oral Sporulating Mesophile gram+ Free living Human oral microflora, Host Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides eggerthii BACTERIAL Bacteroides eggerthii 1_2_48FAA 1_2_48FAA Unknown Gi04888 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu ACWG Medical, Human Microbiome Project (HMP) 665953 40009 005797_GCAT 1016 0 Awaiting DNA 0 0 0 USA Human gastrointestinal tract Homo sapiens Gastrointestinal tract Mesophile Free living Host, Human intestinal microflora Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides ovatus BACTERIAL Bacteroides ovatus 3_8_47FAA 3_8_47FAA Unknown Gi04889 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu ACWH Medical, Human Microbiome Project (HMP) 665954 40011 005798_GCAT 1017 0 Awaiting DNA 0 0 0 USA Human gastrointestinal tract Homo sapiens Gastrointestinal tract Mesophile Free living Host, Human intestinal microflora Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 2_1_56FAA BACTERIAL Bacteroides sp. 2_1_56FAA 2_1_56FAA Unknown Gi04890 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu ACWI Medical, Human Microbiome Project (HMP) 665938 40013 005799_GCAT 1018 0 Awaiting DNA 0 0 0 USA Human gastrointestinal tract Homo sapiens Gastrointestinal tract Mesophile Free living Host, Human intestinal microflora Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. 10_1_50 BACTERIAL Campylobacter sp. 10_1_50 10_1_50 Unknown Gi04891 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu ACWJ Medical, Human Microbiome Project (HMP) 665939 40015 005800_GCAT 1019 0 Awaiting DNA 0 0 0 454-FLX USA Human gastrointestinal tract Homo sapiens Gastrointestinal tract Microaerophilic Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Chains Host, Human intestinal microflora Motile Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium sp. 7_3_54FAA BACTERIAL Clostridium sp. 7_3_54FAA 7_3_54FAA Unknown Gi04892 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu ACWK Medical, Human Microbiome Project (HMP) 665940 40017 005801_GCAT 1020 0 Awaiting DNA 0 0 0 USA Human gastrointestinal tract Homo sapiens Gastrointestinal tract Anaerobe Sporulating Mesophile gram+ Pairs, Singles None Host, Human intestinal microflora Motile Chemoorganotroph Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae Coprobacillus Coprobacillus sp. 3_3_56FAA BACTERIAL Coprobacillus sp. 3_3_56FAA 3_3_56FAA Unknown Gi04893 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu http://www.broad.mit.edu/info/contact.html ACWL Medical, Human Microbiome Project (HMP) 665941 40019 005802_GCAT 1021 0 Awaiting DNA 0 0 0 USA Human gastrointestinal tract Homo sapiens Gastrointestinal tract Anaerobe Sporulating Mesophile gram+ Free living Host Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp. 6_1_46AFAA BACTERIAL Desulfovibrio sp. 6_1_46AFAA 6_1_46AFAA Unknown Gi04894 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu ACWM Medical, Human Microbiome Project (HMP) 665942 40021 005803_GCAT 1022 0 Awaiting DNA 0 0 0 USA Human gastrointestinal tract Homo sapiens Gastrointestinal tract Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Host Motile Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Eggerthella Eggerthella sp. 1_3_56FAA BACTERIAL Eggerthella sp. 1_3_56FAA 1_3_56FAA Unknown Gi04895 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu ACWN Medical, Human Microbiome Project (HMP) 665943 40023 005804_GCAT 1023 0 Awaiting DNA 0 0 0 USA Human gastrointestinal tract Homo sapiens Gastrointestinal tract Mesophile Free living Singles None Host Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Klebsiella Klebsiella sp. 4_1_44FAA BACTERIAL Klebsiella sp. 4_1_44FAA 4_1_44FAA Unknown Gi04896 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu ACWO Medical, Human Microbiome Project (HMP) 665944 40025 005805_GCAT 1024 0 Awaiting DNA 0 0 0 USA Human gastrointestinal tract Homo sapiens Gastrointestinal tract Facultative Rod-shaped Mesophile gram- Free living Host Nonmotile Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Lachnospiraceae bacterium 3_1_46FAA BACTERIAL Lachnospiraceae bacterium sp. 3_1_46FAA 3_1_46FAA Unknown Gi04897 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu ACWP Medical, Human Microbiome Project (HMP) 665950 40027 005806_GCAT 1025 0 Awaiting DNA 0 0 0 USA Human gastrointestinal tract Homo sapiens Gastrointestinal tract Facultative Rod-shaped Mesophile gram- Free living Host Nonmotile Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Lachnospiraceae bacterium 8_1_57FAA BACTERIAL Lachnospiraceae bacterium sp. 8_1_57FAA 8_1_57FAA Unknown Gi04898 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu ACWQ Medical, Human Microbiome Project (HMP) 665951 40029 005807_GCAT 1026 0 Awaiting DNA 0 0 0 USA Human gastrointestinal tract Homo sapiens Gastrointestinal tract Facultative Rod-shaped Mesophile gram- Free living Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sp. 7_1_47FAA BACTERIAL Lactobacillus sp. 7_1_47FAA 7_1_47FAA Unknown Gi04899 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu ACWR Medical, Human Microbiome Project (HMP) 665945 40031 005808_GCAT 1027 0 Awaiting DNA 0 0 0 USA Human gastrointestinal tract Homo sapiens Gastrointestinal tract Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Host, Human intestinal microflora Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria sp. GT4A_CT1 BACTERIAL Neisseria sp. GT4A_CT1 GT4A_CT1 Unknown Gi04900 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu ACWS Medical, Human Microbiome Project (HMP) 665946 40033 005809_GCAT 1028 0 Awaiting DNA 0 0 0 USA Human oral cavity Homo sapiens Oral Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs Host Nonmotile Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Peptococcus Peptococcus sp. 2_1_54CFAA_CT1 BACTERIAL Peptococcus sp. 2_1_54CFAA_CT1 2_1_54CFAA_CT1 Unknown Gi04901 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu ACWT Medical, Human Microbiome Project (HMP) 665947 40035 005810_GCAT 1029 0 Awaiting DNA 0 0 0 USA Human gastrointestinal tract Homo sapiens Gastrointestinal tract Mesophile gram- Free living Host, Human intestinal microflora Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. 2_1_26 BACTERIAL Pseudomonas sp. 2_1_26 2_1_26 Unknown Gi04902 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu ACWU Medical, Human Microbiome Project (HMP) 665948 40037 005811_GCAT 1030 0 Awaiting DNA 0 0 0 USA Human gastrointestinal tract Homo sapiens Gastrointestinal tract Mesophile Free living Host, Human intestinal microflora Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Subdoligranulum Subdoligranulum sp. 6_1_47FAA BACTERIAL Subdoligranulum sp. 6_1_47FAA 6_1_47FAA Unknown Gi04903 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu ACWV Medical, Human Microbiome Project (HMP) 665955 40039 005812_GCAT 1031 0 Awaiting DNA 0 0 0 USA Human gastrointestinal tract Homo sapiens Gastrointestinal tract Anaerobe Nonsporulating Mesophile gram- Free living None Host, Human intestinal microflora 37 Nonmotile Non-Pathogen Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Subdoligranulum Subdoligranulum sp. 4_3_54A2FAA BACTERIAL Subdoligranulum sp. 4_3_54A2FAA 4_3_54A2FAA Unknown Gi04904 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu ACWW Medical, Human Microbiome Project (HMP) 665956 40041 005813_GCAT 1032 0 Awaiting DNA 0 0 0 USA Human gastrointestinal tract Homo sapiens Gastrointestinal tract Anaerobe Nonsporulating Mesophile gram- Free living None Host, Human intestinal microflora 37 Nonmotile Non-Pathogen Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Tannerella Tannerella sp. 6_1_58FAA_CT1 BACTERIAL Tannerella sp. 6_1_58FAA_CT1 6_1_58FAA_CT1 Unknown Gi04905 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu ACWX Medical, Human Microbiome Project (HMP) 665949 40043 005814_GCAT 1033 0 Awaiting DNA 0 0 0 USA Human gastrointestinal tract Homo sapiens Gastrointestinal tract Anaerobe Nonsporulating Mesophile gram- Free living None Host, Human intestinal microflora 37 Nonmotile Non-Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces BACTERIAL Actinomyces massiliensis CCUG 53522 CCUG 53522 CCUG 53522 Yes Gi04906 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 461393 005815_GCAT 9053 0 Targeted 0 0 0 454, Sanger USA Human blood of a 39-yr-old man with pleuropneumonia May 2004; France,Marseille,Timone hospital 2004 France 43.297593 5.381042 Homo sapiens Male 39 years old Patient with pleuropneumonia Blood Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Human oral microflora, Host, Blood Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces BACTERIAL Actinomyces oricola Oral Taxon 708 CCUG 46090 CCUG 46090 DSM 17234, CCUG 46090 Yes Gi04907 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 206043 005816_GCAT 9054 HOMD: tax_id 708 0 Targeted 0 0 0 Sanger, 454 USA Human dental abscess,male United Kingdom Cardiff, UK 51.481307 -3.180498 Homo sapiens Male Oral Dental plaque Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Host, Human oral microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. BACTERIAL Actinomyces sp. Oral Taxon 169 F0340 F0340 Unknown Gi04908 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 29317 005817_GCAT 9055 HOMD: tax_id 169 0 Targeted 0 0 0 Sanger, 454 USA Homo sapiens Oral Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Host, Human oral microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. BACTERIAL Actinomyces sp. Oral Taxon 170 304H17BP 304H17BP Unknown Gi04909 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 29317 005818_GCAT 9056 HOMD: tax_id 170 0 Targeted 0 0 0 454, Sanger USA Human oral cavity Homo sapiens Oral Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Host, Human oral microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. BACTERIAL Actinomyces sp. Oral Taxon 171 F0337 F0337 Unknown Gi04910 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 29317 005819_GCAT 9057 HOMD: tax_id 171 0 Targeted 0 0 0 Sanger, 454 USA Human oral cavity Homo sapiens Oral Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Host, Human oral microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. BACTERIAL Actinomyces sp. Oral Taxon 175 36T9AP 36T9AP Unknown Gi04911 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 29317 005820_GCAT 9058 HOMD: tax_id 175 0 Targeted 0 0 0 Sanger, 454 USA Human oral cavity Homo sapiens Oral Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Flavobacteria Flavobacteriales Candidatus Sulcia Candidatus Sulcia muelleri BACTERIAL Candidatus Sulcia muelleri SMDSEM SMDSEM Candidatus Sulcia muelleri SMDSEM Gc01075 Genome Complete and Published Public Univ of Arizona Moran, N nmoran@email.arizona.edu SMDSEM 2009-08-18 PNAS in press Agricultural 595499 33829 005821_GCAT 0 NC_013123 Complete Level 6: Finished 276 278 1 0 22 USA leafhopper John McCutcheon (jmccutch@email.arizona.edu) Mesophile gram- Symbiotic leafhopper None Host Symbiotic Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Aggregatibacter Aggregatibacter actinomycetemcomitans BACTERIAL Aggregatibacter actinomycetemcomitans D11S-1 D11S-1 Aggregatibacter actinomycetemcomitans D11S-1 Gi04912 Genome incomplete Public Univ of South California Animal Pathogen, Medical, Human Pathogen 668336 40107 005822_GCAT 0 0 0 0 USA a subject with aggressive periodontitis Homo sapiens patient with aggressive periodontitis Oral Periodontal Facultative Rod-shaped Mesophile gram- Symbiotic Parasitic Chains, Pairs, Singles Periodontitis, Periodontal infection Oral microflora, Host 37 Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12- MG1655 K12- MG1655 Escherichia coli str. K-12 substr. MG1655 Gi04913 Genome incomplete Public Broad Institute NIH Birren B bwb@BROAD.MIT.EDU Medical 511145 40075 005823_GCAT 0 Awaiting DNA 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora 37 Motile Non-Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Edwardsiella Edwardsiella tarda BACTERIAL Edwardsiella tarda 080813 080813 Edwardsiella tarda 080813 Gi04915 Genome incomplete Public Beijing Genomics Institute Fish Pathogen, Medical, Human Pathogen 667120 39899 005825_GCAT 0 0 0 0 China cases of septicemia and meningitis, primarily in immunocompromised patients. Homo sapiens Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Wound infection, Septicemia Host, Human intestinal microflora Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Edwardsiella BACTERIAL Edwardsiella tarda ATCC 15947 ATCC 15947 Edwardsiella tarda ATCC 15947 DSM 13696, ATCC 15947 Yes Gi04916 Genome incomplete Public Beijing Genomics Institute Human Pathogen, Medical, Fish Pathogen 636 39899 005826_GCAT 0 0 0 0 China cases of septicemia and meningitis, primarily in immunocompromised patients. Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Septicemia, Wound infection Host, Human intestinal microflora Motile Pathogen Bacteria Cyanobacteria Chroococcales BACTERIAL Gloeocapsa sp. PCC 7428 PCC 7428 PCC 7428, ATCC 29159 No Gi04917 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 102231 005827_GCAT 0 In progress 3470 0 46 USA moderate hot spring Aerobe Mesophile Free living None Fresh water Nonmotile Bacteria Cyanobacteria Chroococcales Gloeocapsa BACTERIAL Gloeocapsa sp. PCC 73106 PCC 73106 PCC 73106, ATCC 27928 No Gi04918 Genome incomplete Public DOE Joint Genome Institute DOE Kerfeld C CKerfeld@lbl.gov GEBA, Tree of Life, GEBA-CYANO 102232 005828_GCAT 0 In progress 0 0 0 USA sphagnum bog, Switzerland Switzerland Aerobe Mesophile Free living None Fresh water Nonmotile Eukaryota Ascomycota Dothideomycetes Pleosporales Pleosporaceae Cochliobolus Cochliobolus heterostrophus EUKARYAL Cochliobolus heterostrophus PR1x412 PR1x412 Gr00059 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 665074 005829_GCAT 0 In progress 0 0 0 USA None Eukaryota Ascomycota Dothideomycetes Pleosporales Pleosporaceae Cochliobolus Cochliobolus heterostrophus EUKARYAL Cochliobolus heterostrophus Hm540 Hm540 race O Gr00060 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 665073 005830_GCAT 0 In progress 0 0 0 USA None Eukaryota Ascomycota Dothideomycetes Pleosporales Pleosporaceae Cochliobolus EUKARYAL Cochliobolus heterostrophus Hm338 Hm338 Gr00061 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 5016 005831_GCAT 0 In progress 0 0 0 USA None Eukaryota Ascomycota Dothideomycetes Pleosporales Pleosporaceae Cochliobolus EUKARYAL Cochliobolus heterostrophus C4 C4 Gr00062 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 5016 005832_GCAT 0 In progress 0 0 0 USA None Eukaryota Ascomycota Dothideomycetes Pleosporales Pleosporaceae Pyrenophora Pyrenophora tritici-repentis EUKARYAL Pyrenophora tritici-repentis race DW7 race DW7 Pyrenophora tritici-repentis Gr00063 Resequencing incomplete Public DOE Joint Genome Institute DOE Plant Pathogen, Agricultural 45151 005833_GCAT 0 In progress 0 0 0 USA Tan spot Pathogen Eukaryota Ascomycota Dothideomycetes Pleosporales Pleosporaceae Pyrenophora Pyrenophora tritici-repentis EUKARYAL Pyrenophora tritici-repentis race 4 race 4 Pyrenophora tritici-repentis Gr00064 Resequencing incomplete Public DOE Joint Genome Institute DOE Plant Pathogen, Agricultural 45151 005834_GCAT 0 In progress 0 0 0 USA Tan spot Pathogen Archaea Crenarchaeota Thermoprotei Thermoproteales Thermofilaceae ARCHAEAL Thermofilum sp. WP28t WP28t Thermofilum sp. Gi04919 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 2268 005835_GCAT 0 Awaiting DNA 0 0 0 USA Anaerobe Rod-shaped Nonsporulating Hyperthermophile gram- Free living None Fresh water 88 Motile Acidophile Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae ARCHAEAL Metallosphaera sp. MK1 MK1 Gi04920 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 41980 005836_GCAT 0 Awaiting DNA 0 0 0 USA Facultative Coccus-shaped Thermophile 2 - 3 gram- Free living None Hot spring, Fresh water 65 Acidophile Chemolithoautotroph Archaea Crenarchaeota Thermoprotei Caldisphaerales Caldisphaeraceae Caldisphaera ARCHAEAL Caldisphaera dracosis 18U65 18U65 Gi04921 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 411358 005837_GCAT 0 Awaiting DNA 0 0 0 USA Anaerobe Coccus-shaped Hyperthermophile gram- Free living Singles, Pairs Hot spring, Fresh water 75 Acidophile Heterotroph Eukaryota Basidiomycota Agaricomycetes Corticiales Corticiaceae Phanerochaete Phanerochaete carnosa EUKARYAL Phanerochaete carnosa HHB-10118-sp HHB-10118-sp Ge00353 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 231932 005838_GCAT 0 35000 0 0 USA Eukaryota Basidiomycota Agaricomycetes Gloeophyllales Gloeophyllaceae Gloeophyllum Gloeophyllum trabeum EUKARYAL Gloeophyllum trabeum ATCC 11539 ATCC 11539 ATCC 11539 Gi04922 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 104355 005839_GCAT 0 Awaiting DNA 0 0 0 USA Wood Lignin degrader, Cellulose degrader Eukaryota Streptophyta Liliopsida Alismatales Araceae Spirodela EUKARYAL Spirodela polyrhiza Ge00354 EST incomplete Public DOE Joint Genome Institute DOE Agricultural 29656 005841_GCAT 0 Awaiting DNA 0 0 0 USA Eukaryota Ascomycota Sordariomycetes Hypocreales Hypocreaceae Hypocrea EUKARYAL Trichoderma reesei CBS 999.79 CBS 999.79 Gr00065 Resequencing incomplete Public DOE Joint Genome Institute DOE Cellulase production, Biotechnological 51453 005842_GCAT 0 In progress 0 0 0 USA None Eukaryota Streptophyta Liliopsida Poales Poaceae Sorghum EUKARYAL Sorghum bicolor Rio Rio Gr00066 Resequencing incomplete Public DOE Joint Genome Institute DOE Rokhsar D DSRokhsar@lbl.gov 4558 005843_GCAT 0 In progress 0 0 0 USA Eukaryota Streptophyta Liliopsida Poales Poaceae Zea Zea mays EUKARYAL Zea mays mays Oh43 Oh43 maize Gr00067 Resequencing incomplete Public DOE Joint Genome Institute DOE Agricultural 381124 005844_GCAT 0 In progress 0 0 0 USA Eukaryota Basidiomycota Agaricomycetes Polyporales Coriolaceae Postia Postia placenta EUKARYAL Postia placenta MAD 698-R-SB12 MAD 698-R-SB12 Gi05253 Gr00068 Genome incomplete Public DOE Joint Genome Institute DOE Cullen D dcullen@wisc.edu Bioenergy 561896 005845_GCAT 0 In progress 0 0 0 USA None Brown-rot, Cellulose degrader Eukaryota Ascomycota Dothideomycetes Capnodiales Davidiellaceae Davidiella EUKARYAL Davidiella tassiana CBS 121621 CBS 121621 Gi04924 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural, Plant Pathogen, Banana Pathogen 29918 005846_GCAT 0 Awaiting DNA 0 0 0 USA Black Sigatoka Pathogen Eukaryota Ascomycota Dothideomycetes Capnodiales Davidiellaceae Davidiella EUKARYAL Davidiella tassiana CBS 121621 CBS 121621 Ge00355 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural, Plant Pathogen, Banana Pathogen 29918 005847_GCAT 0 Awaiting DNA 0 0 0 USA Black Sigatoka Pathogen Eukaryota Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas EUKARYAL Chlamydomonas reinhardtii crr1 crr1 Ge00357 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 3055 005850_GCAT 0 Awaiting DNA 0 0 0 USA Eukaryota Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas EUKARYAL Chlamydomonas reinhardtii crr1 deltaCys crr1 deltaCys Ge00358 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 3055 005851_GCAT 0 Awaiting DNA 0 0 0 USA Eukaryota Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas EUKARYAL Chlamydomonas reinhardtii CRR1 CRR1 Ge00359 EST incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 3055 005852_GCAT 0 Awaiting DNA 0 0 0 USA Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. BACTERIAL Actinomyces sp. Oral Taxon 177 12T23BP 12T23BP Unknown Gi04926 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 29317 005853_GCAT 9059 HOMD: tax_id 177 0 Targeted 0 0 0 Sanger, 454 USA Human oral cavity Homo sapiens Oral Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Host, Human oral microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. BACTERIAL Actinomyces sp. Oral Taxon 178 64A38BP 64A38BP Unknown Gi04927 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 29317 005854_GCAT 9060 HOMD: tax_id 178 0 Targeted 0 0 0 Sanger, 454 USA Human oral cavity Homo sapiens Oral Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Host, Human oral microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. BACTERIAL Actinomyces sp. Oral Taxon 181 36H41AP 36H41AP Unknown Gi04928 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 29317 005855_GCAT 9061 HOMD: tax_id 181 0 Targeted 0 0 0 454, Sanger USA Human oral cavity Homo sapiens Oral Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Host, Human oral microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. BACTERIAL Actinomyces sp. Oral Taxon 448 39T15BP 39T15BP Unknown Gi04929 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 29317 005856_GCAT 9062 HOMD: tax_id 448 0 Targeted 0 0 0 454, Sanger USA Human oral cavity Homo sapiens Oral Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Host, Human oral microflora Nonmotile Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Aggregatibacter BACTERIAL Aggregatibacter actinomycetemcomitans Oral Taxon 545 ATCC 33389 ATCC 33389 CCUG 3715, ATCC 33389 Yes Gi04930 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 732 005857_GCAT 9063 HOMD: tax_id 545 0 Targeted 0 0 0 USA Human oral Homo sapiens Oral Facultative Rod-shaped Mesophile gram- Symbiotic Parasitic Chains, Pairs, Singles Oral microflora, Host 37 Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Aggregatibacter BACTERIAL Aggregatibacter segnis Oral Taxon 762 ATCC 33393 ATCC 33393 ATCC 33393 Yes Gi04931 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 739 005858_GCAT 9064 HOMD: tax_id 762 0 Targeted 0 0 0 USA dental plaque, Denmark Denmark Homo sapiens Oral Facultative Rod-shaped Mesophile gram- Symbiotic Parasitic Chains, Pairs, Singles Oral microflora, Host 37 Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae BACTERIAL Aggregatibacter sp. Oral Taxon 458 13H35BP 13H35BP Unknown Gi04932 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 416916 005859_GCAT 9065 HOMD: tax_id 458 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Facultative Rod-shaped Mesophile gram- Symbiotic Parasitic Chains, Pairs, Singles Oral microflora, Host 37 Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae BACTERIAL Aggregatibacter sp. Oral Taxon 512 55H50BA 55H50BA Unknown Gi04933 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 416916 005860_GCAT 9066 HOMD: tax_id 512 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Facultative Rod-shaped Mesophile gram- Symbiotic Parasitic Chains, Pairs, Singles Oral microflora, Host 37 Nonmotile Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Anaerococcus BACTERIAL Anaerococcus tetradius Oral Taxon 788 F0127 F0127 Unknown Gi04934 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 33036 005861_GCAT 9067 HOMD: tax_id 788 0 Targeted 0 0 0 454-FLX, Illumina USA Human oral Homo sapiens Oral Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs Host, Human oral microflora 37 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae BACTERIAL Atopobium sp. Oral Taxon 199 39H42BP 39H42BP Unknown Gi04935 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1380 005862_GCAT 9068 HOMD: tax_id 199 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Mesophile gram+ Free living Host, Human oral microflora Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae BACTERIAL Atopobium sp. Oral Taxon 810 F0209 F0209 Unknown Gi04936 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1380 005863_GCAT 9069 HOMD: tax_id 810 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Mesophile gram+ Free living Host, Human oral microflora Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides BACTERIAL Bacteroides heparinolyticus Oral Taxon 630 ATCC 35895 ATCC 35895 CCUG 27827, ATCC 35895 Yes Gi04937 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 28113 005864_GCAT 9070 HOMD: tax_id 630 0 Targeted 0 0 0 USA subgingival dental plaque, Tokyo, Japan Japan Tokyo, Japan 35.689488 139.691706 Homo sapiens Oral Dental plaque Anaerobe Mesophile Free living Human oral microflora, Host Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga sp. BACTERIAL Capnocytophaga sp. Oral Taxon 338 F0234 F0234 Unknown Gi04938 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 44737 005865_GCAT 9071 HOMD: tax_338 0 Targeted 0 0 0 Sanger, 454 USA Human oral cavity Human oral cavity Homo sapiens Oral Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora 35 - 37 Motile Opportunistic Pathogen Chemoorganotroph Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga sp. BACTERIAL Capnocytophaga sp. Oral Taxon 324 55H27BA 55H27BA Unknown Gi04939 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 44737 005866_GCAT 9072 HOMD: tax_324 0 Targeted 0 0 0 454, Sanger USA Human oral cavity Human oral cavity Homo sapiens Oral Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora 35 - 37 Motile Opportunistic Pathogen Chemoorganotroph Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga sp. BACTERIAL Capnocytophaga sp. Oral Taxon 326 17H42BP&A 17H42BP&A Unknown Gi04940 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 44737 005867_GCAT 9073 HOMD: tax_326 0 Targeted 0 0 0 Sanger, 454 USA Human oral cavity Human oral cavity Homo sapiens Oral Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora 35 - 37 Motile Opportunistic Pathogen Chemoorganotroph Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga sp. BACTERIAL Capnocytophaga sp. Oral Taxon 329 F0087 F0087 Unknown Gi04941 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 44737 005868_GCAT 9074 HOMD: tax_329 0 Targeted 0 0 0 454, Sanger USA Human oral cavity Human oral cavity Homo sapiens Oral Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora 35 - 37 Motile Opportunistic Pathogen Chemoorganotroph Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga sp. BACTERIAL Capnocytophaga sp. Oral Taxon 332 60T29BP 60T29BP Unknown Gi04942 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 44737 005869_GCAT 9075 HOMD: tax_332 0 Targeted 0 0 0 454, Sanger USA Human oral cavity Human oral cavity Homo sapiens Oral Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora 35 - 37 Motile Opportunistic Pathogen Chemoorganotroph Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga sp. BACTERIAL Capnocytophaga sp. Oral Taxon 335 64A16BP 64A16BP Unknown Gi04943 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 44737 005870_GCAT 9076 HOMD: tax_335 0 Targeted 0 0 0 454, Sanger USA Human oral cavity Human oral cavity Homo sapiens Oral Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora 35 - 37 Motile Opportunistic Pathogen Chemoorganotroph Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga sp. BACTERIAL Capnocytophaga sp. Oral Taxon 336 106H31BP 106H31BP Unknown Gi04944 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 44737 005871_GCAT 9077 HOMD: tax_336 0 Targeted 0 0 0 454, Sanger USA Human oral cavity Human oral cavity Homo sapiens Oral Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora 35 - 37 Motile Opportunistic Pathogen Chemoorganotroph Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga sp. BACTERIAL Capnocytophaga sp. Oral Taxon 380 30H31BP 30H31BP Unknown Gi04945 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 44737 005872_GCAT 9078 HOMD: tax_380 0 Targeted 0 0 0 454, Sanger USA Human oral cavity Human oral cavity Homo sapiens Oral Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora 35 - 37 Motile Opportunistic Pathogen Chemoorganotroph Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga sp. BACTERIAL Capnocytophaga sp. Oral Taxon 412 400H24BP 400H24BP Unknown Gi04946 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 44737 005873_GCAT 9079 HOMD: tax_412 0 Targeted 0 0 0 454, Sanger USA Human oral cavity Human oral cavity Homo sapiens Oral Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora 35 - 37 Motile Opportunistic Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Cardiobacteriales Cardiobacteriaceae Cardiobacterium BACTERIAL Cardiobacterium valvulum Oral Taxon 540 16T8BP 16T8BP Unknown Gi04947 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 194702 005874_GCAT 9080 HOMD: tax_540 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Aerobe Mesophile gram- Free living Host, Human oral microflora Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Centipeda BACTERIAL Centipeda periodontii Oral Taxon 726 DSM 2778 DSM 2778 ATCC 35019, DSM 2778 Yes Gi04948 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 82203 005875_GCAT 9081 HOMD: tax_726 0 Targeted 0 0 0 USA human periodontal lesion, Pennsylvania USA Homo sapiens Oral Periodontal Aerobe Mesophile gram- Free living Host, Human oral microflora Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfomicrobiaceae Desulfomicrobium BACTERIAL Desulfomicrobium orale Oral Taxon 703 DSM 12838 DSM 12838 DSM 12838 Yes Gi04949 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 132132 005876_GCAT 9082 HOMD: tax_703 0 Targeted 0 0 0 USA Subgingival plaque of a patient with periodontitis; The Netherlands Netherlands Homo sapiens Patient with periodontitis Oral Periodontal Mesophile Free living Host, Human oral microflora Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Dialister BACTERIAL Dialister microaerophilus Oral Taxon 843 DSM 19965 DSM 19965 CCUG 48837, DSM 19965 Yes Gi04950 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 309120 005877_GCAT 9083 HOMD: tax_843 0 Targeted 0 0 0 USA Human amniotic fluid; France 2001 France Montpellier, France 43.6 3.883333 Homo sapiens Female 38 year old Urogenital tract Amniotic fluid Vaginal Anaerobe Rod-shaped Mesophile gram+ Free living Vagina microflora, Host, Human oral microflora Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Dietziaceae BACTERIAL Dietzia sp. Oral Taxon 368 W5195 W5195 Unknown Gi04951 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 37914 005878_GCAT 9084 HOMD: tax_368 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Aerobe Mesophile gram+ Free living Host, Human oral microflora 28 Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Eikenella Eikenella sp. BACTERIAL Eikenella sp. Oral Taxon 011 UB204 UB204 Unknown Gi04952 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 540 005879_GCAT 9085 HOMD: tax_011 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Periodontitis Host Motile Pathogen Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Enterobacter Enterobacter hormaechei BACTERIAL Enterobacter hormaechei steigerwaltii Oral Taxon 634 ATCC 49162 ATCC 49162 Enterobacter hormaechei subsp. steigerwaltii DSM 12409, ATCC 49162, CCUG 27126 Yes Gi04953 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 299766 005880_GCAT 9086 HOMD: tax_634 0 Targeted 0 0 0 USA sputum, San Francisco, CA USA San Francisco, CA 37.775206 -122.419209 Homo sapiens Oral Sputum Mesophile gram- Free living Human oral microflora, Host Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus BACTERIAL Enterococcus casseliflavus Oral Taxon 801 ATCC 12755 ATCC 12755 ATCC 12755, DSM 4841 No Gi04954 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 37734 005881_GCAT 9087 HOMD: tax_801 0 Targeted 0 0 0 USA butter milk Feb 1935 Homo sapiens Oral Aerobe Coccus-shaped Mesophile Halotolerant gram+ Free living Chains, Pairs Opportunistic infection Host, Human oral microflora Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus BACTERIAL Enterococcus italicus Oral Taxon 803 DSM 15952 DSM 15952 CCUG 50447, DSM 15952 Yes Gi04955 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 246144 005882_GCAT 9088 HOMD: tax_801 0 Targeted 0 0 0 USA Cheese,Italian Toma,from bovine milk 17 Dec 2004 Italy Piedmont, Italy 45.052237 7.515389 Homo sapiens Oral Aerobe Coccus-shaped Mesophile Halotolerant gram+ Free living Chains, Pairs Opportunistic infection Host, Human oral microflora Nonmotile Pathogen Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium BACTERIAL Eubacterium brachy Oral Taxon 557 13H29BP 13H29BP Unknown Gi04956 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 35517 005883_GCAT 9089 HOMD: tax_557 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Mesophile gram+ Free living None Host, Human oral microflora Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium BACTERIAL Eubacterium minutum Oral Taxon 673 ATCC 700079 ATCC 700079 CIP 104795, DSM 18759, ATCC 700079 Yes Gi04957 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 76124 005884_GCAT 9090 HOMD: tax_673 0 Targeted 0 0 0 USA human peridontal pocket Homo sapiens Oral Periodontal Mesophile gram+ Free living None Host, Human oral microflora Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium BACTERIAL Eubacterium saburreum Oral Taxon 494 402H1AP 402H1AP Unknown Gi04958 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 467210 005885_GCAT 9091 HOMD: tax_494 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Mesophile gram+ Free living None Host, Human oral microflora Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium BACTERIAL Eubacterium sulci Oral Taxon 467 ATCC 35585 ATCC 35585 ATCC 35585, CCUG 20560 Yes Gi04959 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 143393 005886_GCAT 9092 HOMD: tax_467 0 Targeted 0 0 0 USA human gingival sulcus Homo sapiens Oral Mesophile gram+ Free living None Host, Human oral microflora Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. BACTERIAL Fusobacterium sp. Oral Taxon 370 W5205 W5205 Unknown Gi04960 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 68766 005887_GCAT 9093 HOMD: tax_370 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum BACTERIAL Fusobacterium nucleatum animalis ATCC 51191 ATCC 51191 Fusobacterium nucleatum subsp. animalis ATCC 51191, CCUG 32879, DSM 8253, CIP 104879 Yes Gi04961 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 76859 005888_GCAT 9094 0 Targeted 0 0 0 USA Animal colon, London, UK 1989 United Kingdom London, UK 51.500152 -0.126236 Homo sapiens Gastrointestinal tract Colon Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Host Nonmotile Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus BACTERIAL Haemophilus aegyptius Oral Taxon 535 ATCC 11116 ATCC 11116 CCUG 25716, ATCC 11116 Yes Gi04962 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 197575 005889_GCAT 9095 HOMD: tax_535 0 Targeted 0 0 0 USA Human conjunctiva 1950 USA Homo sapiens Eye Conjunctiva Facultative Rod-shaped Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus sp. BACTERIAL Haemophilus sp. Oral Taxon 036 41H4BP 41H4BP Unknown Gi04963 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 740 005890_GCAT 9096 HOMD: tax_036 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Facultative Rod-shaped Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Johnsonella BACTERIAL Johnsonella ignava Oral Taxon 635 D130C-30 D130C-30 Unknown Gi04964 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 43995 005891_GCAT 9097 HOMD: tax_635 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Facultative Rod-shaped Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Kingella BACTERIAL Kingella denitrificans Oral Taxon 582 ATCC 33394 ATCC 33394 ATCC 33394, CCUG 6516, DSM 10202 Yes Gi04965 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 502 005892_GCAT 9098 HOMD: tax_582 0 Targeted 0 0 0 USA pharynx 03 Oct 1977 United Kingdom Homo sapiens Oral Pharyngeal mucosa Mesophile gram- Free living None Host, Human skin Bacteria Firmicutes Clostridia Clostridiales BACTERIAL Lachnospiraceae[G-1] sp. Oral Taxon 082 66T26BP 66T26BP Unknown Gi04966 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 186803 005893_GCAT 9099 HOMD: tax_082 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Mesophile gram+ Free living Host, Human oral microflora Bacteria Firmicutes Clostridia Clostridiales BACTERIAL Lachnospiraceae[G-3] sp. Oral Taxon 096 1T16BP 1T16BP Unknown Gi04967 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 186803 005894_GCAT 9100 HOMD: tax_096 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Mesophile gram+ Free living Host, Human oral microflora Bacteria Firmicutes Clostridia Clostridiales BACTERIAL Lachnospiraceae[G-4] sp. Oral Taxon 419 F0158 F0158 Unknown Gi04968 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 186803 005895_GCAT 9101 HOMD: tax_419 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Mesophile gram+ Free living Host, Human oral microflora Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus oris Oral Taxon 709 80H42AP 80H42AP Unknown Gi04969 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1632 005896_GCAT 9102 HOMD: tax_709 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Facultative Rod-shaped Mesophile gram- Free living None Host, Human oral microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sp. BACTERIAL Lactobacillus sp. Oral Taxon 418 W6353 W6353 Unknown Gi04970 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1591 005897_GCAT 9103 HOMD: tax_418 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Facultative Rod-shaped Mesophile gram- Free living None Host, Human oral microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sp. BACTERIAL Lactobacillus sp. Oral Taxon 424 W6466 W6466 Unknown Gi04971 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1591 005898_GCAT 9104 HOMD: tax_424 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Facultative Rod-shaped Mesophile gram- Free living None Host, Human oral microflora Nonmotile Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae BACTERIAL Lactobacillus catenaformis Oral Taxon 569 F0143 F0143 Unknown Gi04972 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 31973 005899_GCAT 9105 HOMD: tax_569 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Facultative Rod-shaped Mesophile gram- Free living None Host, Human oral microflora Nonmotile Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Leptotrichia BACTERIAL Leptotrichia buccalis Oral Taxon 563 301H31BP 301H31BP Unknown Gi04974 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 40542 005901_GCAT 9106 HOMD: tax_563 0 Targeted 0 0 0 USA Human oral isolate Human oral isolate Homo sapiens Oral Anaerobe Rod-shaped Mesophile gram- Free living Filaments, Chains Oral microflora, Host, Human oral microflora Nonmotile Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Leptotrichia BACTERIAL Leptotrichia shahii Oral Taxon 214 101H7BP 101H7BP Unknown Gi04975 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 157691 005902_GCAT 9107 HOMD: tax_214 0 Targeted 0 0 0 USA Human oral isolate Human oral isolate Homo sapiens Oral Anaerobe Rod-shaped Mesophile gram- Free living Filaments, Chains Oral microflora, Host, Human oral microflora Nonmotile Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Leptotrichia Leptotrichia sp. BACTERIAL Leptotrichia sp. Oral taxon 225 64A2BP 64A2BP Unknown Gi04976 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 104608 005903_GCAT 9108 HOMD: tax_225 0 Targeted 0 0 0 USA Human oral isolate Human oral isolate Homo sapiens Oral Anaerobe Rod-shaped Mesophile gram- Free living Filaments, Chains Oral microflora, Host, Human oral microflora Nonmotile Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Leptotrichia Leptotrichia sp. BACTERIAL Leptotrichia sp. Oral Taxon 498 F0316 F0316 Unknown Gi04977 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 104608 005904_GCAT 9109 HOMD: tax_498 0 Targeted 0 0 0 USA Human oral isolate Human oral isolate Homo sapiens Oral Anaerobe Rod-shaped Mesophile gram- Free living Chains, Filaments Oral microflora, Host, Human oral microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Microbacteriaceae Microbacterium Microbacterium sp. oral strain C24KA BACTERIAL Microbacterium sp. Oral Taxon 186 C24KA C24KA Microbacterium sp. oral strain C24KA Unknown Gi04978 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 135069 005905_GCAT 9110 HOMD: tax_186 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Mesophile gram+ Free living Host, Human oral microflora Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XIII. Incertae Sedis Mogibacterium BACTERIAL Mogibacterium diversum Oral Taxon 593 303H40BP 303H40BP Unknown Gi04979 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 114527 005906_GCAT 9111 HOMD: tax_593 0 Targeted 0 0 0 454, Sanger USA Human oral cavity Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host, Oral microflora Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XIII. Incertae Sedis Mogibacterium BACTERIAL Mogibacterium neglectum Oral Taxon 691 ATCC 700924 ATCC 700924 CCUG 47131, ATCC 700924 Yes Gi04980 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 114528 005907_GCAT 9112 HOMD: tax_691 0 Targeted 0 0 0 Sanger, 454 USA necrotic human dental pulp 22 Nov 2002 Japan Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host, Oral microflora Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XIII. Incertae Sedis Mogibacterium BACTERIAL Mogibacterium pumilum Oral Taxon 742 ATCC 700696 ATCC 700696 ATCC 700696 Yes Gi04981 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 86332 005908_GCAT 9113 HOMD: tax_742 0 Targeted 0 0 0 454, Sanger USA Human periodontal pocket 1995 Japan Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host, Oral microflora Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XIII. Incertae Sedis Mogibacterium BACTERIAL Mogibacterium vescum Oral Taxon 008 ATCC 700697 ATCC 700697 ATCC 700697 Yes Gi04982 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 86332 005909_GCAT 9114 HOMD: tax_008 0 Targeted 0 0 0 454, Sanger USA Human periodontal pocket Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host, Oral microflora Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium neoaurum Oral Taxon 692 ATCC 25795 ATCC 25795 CCUG 37665, NCTC 10818, JCM 6365, ATCC 25795, DSM 44074 Yes Gi04983 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1795 005910_GCAT 9115 HOMD: tax_692 0 Targeted 0 0 0 USA Soil 02 Apr 1997 Japan Homo sapiens Oral Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles None Host, Human oral microflora Nonmotile Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma BACTERIAL Mycoplasma faucium Oral Taxon 606 ATCC 25293 ATCC 25293 NCTC 10174, ATCC 25293 Yes Gi04984 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 56142 005911_GCAT 9116 HOMD: tax_606 0 Targeted 0 0 0 USA Human oropharynx, Washington, DC USA Washington, DC 38.892091 -77.024055 Homo sapiens Oral Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Host, Human oral microflora Nonmotile Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma BACTERIAL Mycoplasma hominis Oral Taxon 632 ATCC 23114 ATCC 23114 CCUG 50616, ATCC 23114 Yes Gi04985 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 2098 005912_GCAT 9117 HOMD: tax_632 0 Targeted 0 0 0 USA rectal swab Homo sapiens Urogenital tract Rectal swab Rectal Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Host, Human oral microflora Nonmotile Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma BACTERIAL Mycoplasma salivarium Oral Taxon 754 ATCC 23064 ATCC 23064 ATCC 23064 No Gi04986 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 2124 005913_GCAT 9118 HOMD: tax_754 0 Targeted 0 0 0 USA saliva Homo sapiens Oral Saliva Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Host, Human oral microflora Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria BACTERIAL Neisseria bacilliformis sp. Oral Taxon 013 ATCC BAA-1200 ATCC BAA-1200 CCUG 50858, ATCC BAA-1200 Yes Gi04987 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 267212 005914_GCAT 9123 HOMD: tax_013 0 Targeted 0 0 0 USA Human wound,53-yr-old man,submandibular,carcinoma 2003 USA Houston, TX 29.759956 -95.362534 Homo sapiens Male 53 years old Patient with submandibular carcinoma Oral Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs None Host, Human airways Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria BACTERIAL Neisseria pharyngis Oral Taxon 729 NCTC 4590 NCTC 4590 NCTC 4590 No Gi04988 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 29434 005915_GCAT 9119 HOMD: tax_729 0 Targeted 0 0 0 USA Human, normal throat 1934 St. Marys Hospital, London 51.517752 -0.174094 Homo sapiens Oral Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs None Host, Human airways Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria sp. BACTERIAL Neisseria sp. Oral Taxon 020 F0370 F0370 Unknown Gi04989 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 192066 005916_GCAT 9120 HOMD: tax_020 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs None Host, Human airways Nonmotile Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Olsenella BACTERIAL Olsenella profusa Oral Taxon 806 DSM 13989 DSM 13989 CCUG 45371, DSM 13989 Yes Gi04990 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 138595 005917_GCAT 9121 HOMD: tax_806 0 Targeted 0 0 0 USA Subgingival plaque in adult with periodontitis May 2001 United Kingdom Guys Hospital,London,UK 51.503376 -0.087329 Homo sapiens Adult Patient qith periodontitis Oral Anaerobe Mesophile gram+ Free living None Host, Human oral microflora 37 Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Olsenella Olsenella sp. F0004 BACTERIAL Olsenella sp. Oral Taxon 807 F0004 F0004 Unknown Gi04992 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 519017 005918_GCAT 9122 HOMD: tax_807 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Mesophile gram+ Free living None Host, Human oral microflora 37 Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae BACTERIAL Oribacterium sp. Oral Taxon 108 36T12AP 36T12AP Unknown Gi04993 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 265975 005919_GCAT 9124 HOMD: tax_108 0 Targeted 0 0 0 USA Human oral sample Human oral sample Homo sapiens Oral Rod-shaped Mesophile gram+ Free living Host, Human oral microflora Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae BACTERIAL Oribacterium sp. Oral Taxon 372 F0249 F0249 Unknown Gi04994 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 265975 005920_GCAT 9125 HOMD: tax_372 0 Targeted 0 0 0 USA Human oral sample Human oral sample Homo sapiens Oral Rod-shaped Mesophile gram+ Free living Host, Human oral microflora Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis BACTERIAL Parvimonas sp. Oral Taxon 110 F0139 F0139 Unknown Gi04995 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 543311 005921_GCAT 9126 HOMD: tax_110 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human oral microflora Pathogen Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis BACTERIAL Parvimonas sp. Oral Taxon 393 W5159 W5159 Unknown Gi04996 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 543311 005922_GCAT 9127 HOMD: tax_393 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human oral microflora Pathogen Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae BACTERIAL Peptococcus sp. Oral Taxon 167 F0270 F0270 Unknown Gi04997 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 2740 005923_GCAT 9128 HOMD: tax_167 0 Targeted 0 0 0 USA Human oral sample Homo sapiens Oral Mesophile gram- Free living Host, Human oral microflora Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Peptoniphilus BACTERIAL Peptoniphilus indolicus Oral Taxon 840 ATCC 29427 ATCC 29427 type C ATCC 29427, DSM 20464, CCUG 17639 Yes Gi04998 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 33030 005924_GCAT 9129 HOMD: tax_840 0 Targeted 0 0 0 USA summer mastitis secretion of heifer 28 May 1985 Japan Gifu,Japan 35.423298 136.760654 Homo sapiens Oral Anaerobe Mesophile gram+ Free living None Host, Human oral microflora 37 Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis BACTERIAL Peptoniphilus sp. Oral Taxon 375 W3886 W3886 Unknown Gi04999 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 162289 005925_GCAT 9130 HOMD: tax_375 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Mesophile gram+ Free living None Host, Human oral microflora 37 Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis BACTERIAL Peptoniphilus sp. Oral Taxon 836 F0141 F0141 Unknown Gi05000 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 162289 005926_GCAT 9131 HOMD: tax_836 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Mesophile gram+ Free living None Host, Human oral microflora 37 Bacteria Firmicutes Clostridia Clostridiales BACTERIAL Peptostreptococcaceae sp. Oral Taxon 106 A3MT A3MT Unknown Gi05001 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 186804 005927_GCAT 9132 HOMD: tax_106 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Mesophile gram+ Free living None Host, Human oral microflora 37 Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae BACTERIAL Porphyromonas sp. Oral Taxon 279 F0030 F0030 Unknown Gi05002 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 836 005928_GCAT 9133 HOMD: tax_279 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Mesophile gram- Free living Host, Human nasopharyngeal microflora Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae BACTERIAL Porphyromonas sp. Oral Taxon 284 F0037 F0037 Unknown Gi05003 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 836 005929_GCAT 9134 HOMD: tax_284 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Mesophile gram- Free living Host, Human nasopharyngeal microflora Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella baroniae Oral Taxon 553 F0026,F0067 F0026,F0067 Unknown Gi05004 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 305719 005930_GCAT 9135 HOMD: tax_553 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella dentalis Oral Taxon 583 ATCC 49559 ATCC 49559 ATCC 49559, DSM 3688, CCUG 48288 Yes Gi05005 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 52227 005931_GCAT 9136 HOMD: tax_583 0 Targeted 0 0 0 USA Human dental root canal Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella denticola Oral Taxon 291 F0289 F0289 Unknown Gi05006 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 28129 005932_GCAT 9137 HOMD: tax_291 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella histicola Oral Taxon 298 66H5BA 66H5BA Unknown Gi05007 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 470565 005933_GCAT 9138 HOMD: tax_298 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella maculosa. Oral Taxon 289 F0099 F0099 Unknown Gi05008 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 439703 005934_GCAT 9139 HOMD: tax_289 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella micans Oral Taxon 378 W5051 W5051 Unknown Gi05009 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 189723 005935_GCAT 9140 HOMD: tax_378 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella multiformis Oral Taxon 685 DSM 16608 DSM 16608 DSM 16608, CCUG 51937 Yes Gi05010 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 282402 005936_GCAT 9141 HOMD: tax_685 0 Targeted 0 0 0 USA Subgingival plaque of a patient with chronic periodontitis; Japan 31 Oct 2005 Japan Saitama,Japan 35.861729 139.645482 Homo sapiens Patient with chronic periodontitis Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella multisaccharivorax Oral Taxon 794 JCM 12954 JCM 12954 CCUG 54633, DSM 17128, JCM 12954 Unknown Gi05011 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 310514 005937_GCAT 9142 HOMD: tax_794 0 Targeted 0 0 0 USA Subgingival plaque, chronic periodontitis; Japan Japan Homo sapiens Patient with chronic periodontitis Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella oulora Oral Taxon 288 F0022 F0022 Unknown Gi05012 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 28136 005938_GCAT 9143 HOMD: tax_288 0 Targeted 0 0 0 USA Subgingival plaque, chronic periodontitis; Japan Japan Homo sapiens Patient with chronic periodontitis Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella pallens Oral Taxon 714 ATCC 700821 ATCC 700821 DSM 18710, ATCC 700821, CCUG 39484 Unknown Gi05013 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 60133 005939_GCAT 9144 HOMD: tax_714 0 Targeted 0 0 0 USA saliva from a young child Finland Homo sapiens Oral Saliva Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella salivae Oral Taxon 307 W1628 W1628 Unknown Gi05014 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 228604 005940_GCAT 9145 HOMD: tax_307 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. BACTERIAL Prevotella sp. Oral Taxon 303 F0068 F0068 Unknown Gi05015 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 59823 005941_GCAT 9146 HOMD: tax_303 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. BACTERIAL Prevotella sp. Oral Taxon 306 15T29AP 15T29AP Unknown Gi05016 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 59823 005942_GCAT 9147 HOMD: tax_306 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Human oral microflora, Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. BACTERIAL Prevotella sp. Oral Taxon 314 F0091 F0091 Unknown Gi05017 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 59823 005943_GCAT 9148 HOMD: tax_314 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. BACTERIAL Prevotella sp. Oral Taxon 376 F0043 F0043 Unknown Gi05018 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 59823 005944_GCAT 9149 HOMD: tax_376 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. BACTERIAL Prevotella sp. Oral Taxon 475 F0059 F0059 Unknown Gi05019 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 59823 005945_GCAT 9150 HOMD: tax_475 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. BACTERIAL Prevotella sp. Oral Taxon 781 F0055 F0055 Unknown Gi05020 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 59823 005946_GCAT 9151 HOMD: tax_781 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. BACTERIAL Prevotella sp. Oral Taxon 782 F0012 F0012 Unknown Gi05021 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 59823 005947_GCAT 9152 HOMD: tax_782 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Propionibacterium BACTERIAL Propionibacterium avidum Oral Taxon 552 ATCC 25577 ATCC 25577 CCUG 36754, ATCC 25577, DSM 4901 Yes Gi05022 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 33010 005948_GCAT 9153 HOMD: tax_552 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Opportunistic infection Host, Human oral microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Propionibacterium BACTERIAL Propionibacterium propionicum Oral Taxon 739 F0230a F0230a Unknown Gi05023 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1750 005949_GCAT 9154 HOMD: tax_739 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Opportunistic infection Host, Human oral microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae BACTERIAL Propionibacterium sp. Oral Taxon 193 MetC3 MetC3 Unknown Gi05024 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1743 005950_GCAT 9155 HOMD: tax_193 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Opportunistic infection Host, Human oral microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae BACTERIAL Scardovia sp. Oral Taxon 195 41H2AP 41H2AP Unknown Gi05025 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 196081 005951_GCAT 9156 HOMD: tax_195 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Mesophile gram+ Free living Host, Human oral microflora Bacteria Proteobacteria Betaproteobacteria Rhodocyclales Rhodocyclaceae Rhodocyclus Rhodocyclus sp. BACTERIAL Scardovia sp. Oral Taxon 028 A08KA A08KA Unknown Gi05026 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 77788 005952_GCAT 9157 HOMD: tax_028 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Mesophile Free living Host, Human oral microflora Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae BACTERIAL Selenomonas artemidis Oral Taxon 124 40T16BP 40T16BP Unknown Gi05027 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 970 005953_GCAT 9158 HOMD: tax_124 0 Targeted 0 0 0 454-FLX, Sanger USA Human oral isolate Homo sapiens Oral Anaerobe Crescent-shaped Mesophile gram+ Free living Host, Human oral microflora Motile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae BACTERIAL Selenomonas artemidis Oral Taxon 136 66H28BA 66H28BA Unknown Gi05028 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 970 005954_GCAT 9159 HOMD: tax_136 0 Targeted 0 0 0 454-FLX, Sanger USA Human oral isolate Homo sapiens Oral Anaerobe Crescent-shaped Mesophile gram+ Free living Host, Human oral microflora Motile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Selenomonas BACTERIAL Selenomonas dianae Oral Taxon 139 15T29BP 15T29BP Unknown Gi05029 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 135079 005955_GCAT 9160 HOMD: tax_139 0 Targeted 0 0 0 Sanger, 454-FLX USA Human oral isolate Homo sapiens Oral Anaerobe Crescent-shaped Mesophile gram+ Free living Host, Human oral microflora Motile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae BACTERIAL Selenomonas sp. Oral Taxon 133 37T26BP 37T26BP Unknown Gi05030 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 970 005956_GCAT 9161 HOMD: tax_133 0 Targeted 0 0 0 Sanger, 454-FLX USA Human oral isolate Homo sapiens Oral Anaerobe Crescent-shaped Mesophile gram+ Free living Host, Human oral microflora Motile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae BACTERIAL Selenomonas sp. Oral Taxon 137 21H23BP 21H23BP Unknown Gi05031 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 970 005957_GCAT 9162 HOMD: tax_137 0 Targeted 0 0 0 Sanger, 454-FLX USA Human oral isolate Homo sapiens Oral Anaerobe Crescent-shaped Mesophile gram+ Free living Host, Human oral microflora Motile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae BACTERIAL Selenomonas sp. Oral Taxon 138 50H31BP 50H31BP Unknown Gi05032 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 970 005958_GCAT 9163 HOMD: tax_138 0 Targeted 0 0 0 454-FLX, Sanger USA Human oral isolate Homo sapiens Oral Anaerobe Crescent-shaped Mesophile gram+ Free living Host, Human oral microflora Motile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae BACTERIAL Selenomonas sp. Oral Taxon 140 66T2BP 66T2BP Unknown Gi05033 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 970 005959_GCAT 9164 HOMD: tax_140 0 Targeted 0 0 0 Sanger, 454-FLX USA Human oral isolate Homo sapiens Oral Anaerobe Crescent-shaped Mesophile gram+ Free living Host, Human oral microflora Motile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae BACTERIAL Selenomonas sp. Oral Taxon 146 73H20BP 73H20BP Unknown Gi05034 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 970 005960_GCAT 9165 HOMD: tax_146 0 Targeted 0 0 0 Sanger, 454-FLX USA Human oral isolate Homo sapiens Oral Anaerobe Crescent-shaped Mesophile gram+ Free living Host, Human oral microflora Motile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae BACTERIAL Selenomonas sp. Oral Taxon 149 67H29BP 67H29BP Unknown Gi05035 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 970 005961_GCAT 9166 HOMD: tax_149 0 Targeted 0 0 0 Sanger, 454-FLX USA Human oral isolate Homo sapiens Oral Anaerobe Crescent-shaped Mesophile gram+ Free living Host, Human oral microflora Motile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae BACTERIAL Selenomonas sp. Oral Taxon 479 25H6BP 25H6BP Unknown Gi05036 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 970 005962_GCAT 9167 HOMD: tax_479 0 Targeted 0 0 0 Sanger, 454-FLX USA Human oral isolate Homo sapiens Oral Anaerobe Crescent-shaped Mesophile gram+ Free living Host, Human oral microflora Motile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae BACTERIAL Selenomonas sp. Oral Taxon 481 11H28BP 11H28BP Unknown Gi05037 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 970 005963_GCAT 9168 HOMD: tax_481 0 Targeted 0 0 0 454-FLX, Sanger USA Human oral isolate Homo sapiens Oral Anaerobe Crescent-shaped Mesophile gram+ Free living Host, Human oral microflora Motile Bacteria Firmicutes Erysipelotrichi Erysipelotrichales Erysipelotrichaceae Solobacterium BACTERIAL Solobacterium moorei Oral Taxon 678 303H20BP 303H20BP Unknown Gi05038 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 102148 005964_GCAT 9169 HOMD: tax_678 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Mesophile Free living Host, Human oral microflora Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus parasanguis Oral Taxon 721 ATCC 15912 ATCC 15912 ATCC 15912 Yes Gi05039 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1318 005965_GCAT 9170 HOMD: tax_721 0 Targeted 0 0 0 USA human throat Homo sapiens Oral Throat Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human oral microflora Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus agalactiae Oral Taxon 537 ATCC 13813 ATCC 13813 ATCC 13813, DSM 2134 Yes Gi05040 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1311 005966_GCAT 9171 HOMD: tax_537 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human oral microflora Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus anginosus Oral Taxon 543 11H5AP 11H5AP Unknown Gi05041 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1328 005967_GCAT 9172 HOMD: tax_543 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human oral microflora Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus australis Oral Taxon 073 304H23AP 304H23AP Unknown Gi05042 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 113107 005968_GCAT 9173 HOMD: tax_073 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human oral microflora Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus constellatus Oral Taxon 576 84A19BP 84A19BP Unknown Gi05043 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 76860 005969_GCAT 9174 HOMD: tax_576 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human oral microflora Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus cristatus Oral Taxon 578 74H10BP 74H10BP Unknown Gi05044 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 45634 005970_GCAT 9175 HOMD: tax_578 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human oral microflora Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus downei Oral Taxon 594 33T30AP 33T30AP Unknown Gi05045 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1317 005971_GCAT 9176 HOMD: tax_594 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human oral microflora Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus intermedius Oral Taxon 644 84A33AP 84A33AP Unknown Gi05046 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1338 005972_GCAT 9177 HOMD: tax_644 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human oral microflora Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus mitis Oral Taxon 398 300H21BP 300H21BP bv 2 Unknown Gi05047 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 28037 005973_GCAT 9178 HOMD: tax_398 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human oral microflora Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus parasanguis II Oral Taxon 411 32T10AP 32T10AP Unknown Gi05048 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1318 005974_GCAT 9179 HOMD: tax_411 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human oral microflora Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus peroris Oral Taxon 728 ATCC 700780 ATCC 700780 ATCC 700780 Yes Gi05049 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 68891 005975_GCAT 9180 HOMD: tax_728 0 Targeted 0 0 0 USA Tooth surface and pharynx of an 8-month-old female patient with Kawasaki disease 1990 Japan Tokyo, Japan 35.689488 139.691706 Homo sapiens Female 8 month old Patient with Kawasaki disease Oral Teeth Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human oral microflora Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus sinensis Oral Taxon 767 HKU4 HKU4 Unknown Gi05050 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 176090 005976_GCAT 9181 HOMD: tax_767 0 Targeted 0 0 0 USA Human oral sample Homo sapiens Oral Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human oral microflora Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus sp. Oral Taxon 056 80H20BP 80H20BP Unknown Gi05051 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 1306 005977_GCAT 9182 HOMD: tax_056 0 Targeted 0 0 0 USA Human oral sample Homo sapiens Oral Anaerobe Coccus-shaped Mesophile gram+ Free living Host, Human oral microflora Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus sp. Oral Taxon 057 85A25AP 85A25AP Unknown Gi05052 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1306 005978_GCAT 9183 HOMD: tax_057 0 Targeted 0 0 0 USA Human oral sample Homo sapiens Oral Anaerobe Coccus-shaped Mesophile gram+ Free living Human oral microflora, Host Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus sp. Oral Taxon 058 69A7BP 69A7BP Unknown Gi05053 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1306 005979_GCAT 9184 HOMD: tax_058 0 Targeted 0 0 0 USA Human oral sample Homo sapiens Oral Anaerobe Coccus-shaped Mesophile gram+ Free living Human oral microflora, Host Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus sp. Oral Taxon 061 9T18AP 9T18AP Unknown Gi05054 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1306 005980_GCAT 9185 HOMD: tax_061 0 Targeted 0 0 0 USA Human oral sample Homo sapiens Oral Anaerobe Coccus-shaped Mesophile gram+ Free living Human oral microflora, Host Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus sp. Oral Taxon 066 304H5AP 304H5AP Unknown Gi05055 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1306 005981_GCAT 9186 HOMD: tax_066 0 Targeted 0 0 0 USA Human oral sample Homo sapiens Oral Anaerobe Coccus-shaped Mesophile gram+ Free living Human oral microflora, Host Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus sp. Oral Taxon 068 52H49AP 52H49AP Unknown Gi05056 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1306 005982_GCAT 9187 HOMD: tax_068 0 Targeted 0 0 0 USA Human oral sample Homo sapiens Oral Anaerobe Coccus-shaped Mesophile gram+ Free living Human oral microflora, Host Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus sp. Oral Taxon 070 52H49AP 52H49AP Unknown Gi05057 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1306 005983_GCAT 9188 HOMD: tax_070 0 Targeted 0 0 0 USA Human oral sample Homo sapiens Oral Anaerobe Coccus-shaped Mesophile gram+ Free living Human oral microflora, Host Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus sp. Oral Taxon 071 73H25AP 73H25AP Unknown Gi05058 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1306 005984_GCAT 9189 HOMD: tax_071 0 Targeted 0 0 0 USA Human oral sample Homo sapiens Oral Anaerobe Coccus-shaped Mesophile gram+ Free living Human oral microflora, Host Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus sp. Oral Taxon 074 Hal T4-E3 Hal T4-E3 Unknown Gi05059 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1306 005985_GCAT 9190 HOMD: tax_074 0 Targeted 0 0 0 USA Human oral sample Homo sapiens Oral Anaerobe Coccus-shaped Mesophile gram+ Free living Human oral microflora, Host Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus sp. Oral Taxon 423 clone C2MKM128 67H17BP 67H17BP Unknown Gi05060 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1306 005986_GCAT 9191 HOMD: tax_423 0 Targeted 0 0 0 USA Human oral sample Homo sapiens Oral Anaerobe Coccus-shaped Mesophile gram+ Free living Human oral microflora, Host Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus vestibularis Oral Taxon 021 74H1AP 74H1AP Unknown Gi05061 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1343 005987_GCAT 9192 HOMD: tax_021 0 Targeted 0 0 0 USA Human oral sample Homo sapiens Oral Anaerobe Coccus-shaped Mesophile gram+ Free living Human oral microflora, Host Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema BACTERIAL Treponema lecithinolyticum Oral Taxon 653 OMZ 684 OMZ 684 ATCC 700332 Yes Gi05062 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 53418 005988_GCAT 9193 HOMD: tax_653 0 Targeted 0 0 0 USA Subgingival plaque from human deep periodontal lesions Homo sapiens Oral Subgingival plaque Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Human oral microflora, Host Motile Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema BACTERIAL Treponema maltophilum Oral Taxon 664 ATCC 51939 ATCC 51939 ATCC 51939 Yes Gi05063 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 51160 005989_GCAT 9194 HOMD: tax_667 0 Targeted 0 0 0 USA human periodontal lesion Homo sapiens Oral Periodontal Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Human oral microflora, Host Motile Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema BACTERIAL Treponema medium Oral Taxon 667 Unknown Gi05064 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 58231 005990_GCAT 9195 HOMD: tax_667 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Human oral microflora, Host Motile Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema Treponema socranskii BACTERIAL Treponema socranskii buccale Oral Taxon 769 Smibert D16B-2 Smibert D16B-2 Unknown Gi05065 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 69713 005991_GCAT 9196 HOMD: tax_769 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Human oral microflora, Host Motile Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema Treponema sp. BACTERIAL Treponema sp. Oral Taxon 257 Smibert D36ER1 Smibert D36ER1 Unknown Gi05066 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 166 005992_GCAT 9197 HOMD: tax_257 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Human oral microflora, Host Motile Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema Treponema sp. BACTERIAL Treponema sp. Oral Taxon 268 Smibert D120 Smibert D120 Unknown Gi05067 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 166 005993_GCAT 9198 HOMD: tax_268 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Human oral microflora, Host Motile Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema Treponema sp. BACTERIAL Treponema sp. Oral Taxon 158 64A18AP 64A18AP Unknown Gi05069 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 166 005994_GCAT 9199 HOMD: tax_158 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Human oral microflora, Host Motile Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema Treponema sp. BACTERIAL Treponema sp. Oral Taxon 780 33T1BP 33T1BP Unknown Gi05070 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 166 005995_GCAT 9200 HOMD: tax_158 0 Targeted 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Human oral microflora, Host Motile Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio vulgaris BACTERIAL Desulfovibrio vulgaris Hildenborough HA3 Hildenborough HA3 Desulfovibrio vulgaris str. Hildenborough Gr00069 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 882 005996_GCAT 0 In progress 0 0 0 Illumina USA Obligate anaerobe Rod-shaped Sporulating Mesophile gram- Free living None Animal intestinal microflora, Fresh water, Soil, Sea water, Mud 37 Motile Sulfate reducer, Hydrogen sulfide gas release Eukaryota Streptophyta Liliopsida Poales Poaceae Zea Zea mays EUKARYAL Zea mays mays Mo17 Mo17 maize Gr00070 Resequencing incomplete Public DOE Joint Genome Institute DOE Agricultural 381124 005997_GCAT 0 In progress 0 0 0 USA Bacteria Firmicutes Clostridia Halanaerobiales Halobacteroidaceae Halobacteroides BACTERIAL Halobacteroides halobius MD-1, DSM 5150 MD-1, DSM 5150 DSM 5150, ATCC 35273 Yes Gi05072 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 42422 005999_GCAT 0 0 0 63.2 Illumina, 454-Titanium USA Dead Sea sediment Israel Dead Sea, Israel 31.500653 35.490986 Anaerobe Mesophile Halophile Free living Bacteria Firmicutes Clostridia Halanaerobiales Halanaerobiaceae Halocella BACTERIAL Halocella cellulolsilytica, Z-10151, DSM 7362 Z-10151, DSM 7362 ATCC 700086, DSM 7362 Yes Gi05073 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 46467 006000_GCAT 0 Awaiting DNA 0 0 63.2 Illumina, 454-Titanium USA Anaerobic sediment; Ukraine, Crimea, Lake Sivash Ukraine Lake Sivash, Crimea, Ukraine 45.350278 33.025 Anaerobe Free living Sediment Bacteria Firmicutes Clostridia Halanaerobiales Halobacteroidaceae Halonatronum BACTERIAL Halonatronum saccharophilum Z-7986, DSM 13868 Z-7986, DSM 13868 DSM 13868 Yes Gi05074 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 150060 006001_GCAT 0 Awaiting DNA 0 0 34.4 Illumina, 454-Titanium USA Coastal lagoon mud; Lake Magad Tanzania 11338841 Lake Magad, Tanzania -2.343556 36.045844 Anaerobe Rod-shaped Sporulating Halophile 8.0 - 8.5 gram- Free living Mud Chemoorganotroph Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Haloplanus ARCHAEAL Haloplanus natans RE 101, DSM 17983 RE 101, DSM 17983 DSM 17983 Yes Gi05075 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 376171 006002_GCAT 0 Awaiting DNA 0 0 63.2 Illumina, 454-Titanium USA Experimental mesocosm filled with a mixture of water from the Dead Sea and the Red Sea; Israel, Sedom. Israel Lake Magad, Tanzania 31.1 35.383333 Mesophile Free living Mud Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus USA300_TCH1516 USA300_TCH1516 Staphylococcus aureus subsp. aureus USA300_TCH1516 ATCC BAA-1717 Unknown Gi05076 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrains@bcm.edu http://imgen.bcm.tmc.edu/molgen/facultyaz/weinstock.html Human Microbiome Project (HMP), Medical, Human Pathogen 451516 34645 006003_GCAT 777 HOMD: tax_550 0 DNA Received 0 0 0 USA Human skin Homo sapiens Skin Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 30 - 37 Nonmotile Pathogen, Meticillin resistant Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Mannheimia Mannheimia haemolytica BACTERIAL Mannheimia haemolytica A2 OVINE A2 OVINE Serotype A2 Mannheimia haemolytica serotype A2 str. OVINE Gi05077 Genome incomplete Public Washington State Univ Medical 669261 40171 006004_GCAT 0 0 0 0 USA Facultative Coccus-shaped Mesophile gram- Free living Respiratory disease, Ovine mastitis, Pasteurellosis Host 37 Pathogen Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas axonopodis BACTERIAL Xanthomonas axonopodis pv. aurantifolii Xanthomonas axonopodis subsp. aurantifolii Gi05079 Genome incomplete Public FAPESP, Univ of Sao Paulo FAPESP Plant Pathogen, Agricultural 189395 291 006006_GCAT 0 0 0 0 Brazil Aerobe Rod-shaped Mesophile gram- Free living Citrus canker Host 25 - 30 Motile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis T85 T85 Mycobacterium tuberculosis T85 Unknown Gi05081 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical 520141 29327 006008_GCAT 0 NZ_ABOW00000000, ABOW00000000 Draft 5x 324 4299 4250 65 USA susceptible isolate closely related to isolates associated with East Asia refered to as Beijing strains. Homo sapiens Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles None Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus salivarius BACTERIAL Lactobacillus salivarius ATCC 11741 ATCC 11741 ATCC 11741 Yes Gi05082 Genome incomplete Public NIH BCM-HGSC hmpstrainsjcvi@bcm.edu Medical, Human Microbiome Project (HMP) 525364 31503 006009_GCAT 545 0 ACGT00000000, NZ_ACGT00000000 Complete Level 1: Standard Draft 35x 54 1995 2046 32 454 USA Human saliva Homo sapiens Oral Saliva Microaerophilic Rod-shaped Mesophile gram+ Free living None Host, Human oral microflora, Human intestinal microflora Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus A8117 A8117 Gi05083 Genome incomplete Public Broad Institute Birren B bwb@BROAD.MIT.EDU Medical, Human Pathogen 553574 40181 006010_GCAT 0 0 0 0 USA Homo sapiens Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Pneumonia, Septicemia Host 30 - 37 Nonmotile Pathogen, Meticillin resistant Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium BACTERIAL Eubacterium nodatum ATCC 33099 ATCC 33099 CCUG 15996, ATCC 33099 Yes Gi05084 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrainsjcvi@bcm.edu Medical, Human Microbiome Project (HMP) 35518 006011_GCAT 9202 0 In progress 0 0 0 USA subgingival region of mouth Homo sapiens Oral Subgingival Anaerobe Mesophile gram+ Free living None Human oral microflora, Host Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema Treponema socranskii BACTERIAL Treponema socranskii socranskii ATCC 35536 ATCC 35536 Treponema socranskii subsp. socranskii ATCC 35536 Yes Gi05085 Genome incomplete Public BCM-HGSC NIH BCM-HGSC hmpstrainsjcvi@bcm.edu Medical, Human Microbiome Project (HMP) 69715 006012_GCAT 9203 0 In progress 0 0 0 USA subgingival plaque of patient with periodontitis, Virginia USA Homo sapiens Oral Subgingival Anaerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Human oral microflora, Host Motile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sakei BACTERIAL Lactobacillus sakei carnosus DSM 15831 DSM 15831 Lactobacillus sakei subsp. carnosus DSM 15831 DSM 15831, CCUG 31331 Yes Gi05086 Genome incomplete Public NIH BCM-HGSC hmpstrainsjcvi@bcm.edu Medical, Human Microbiome Project (HMP) 525363 31501 006013_GCAT 9204 0 In progress 0 0 0 USA Fermented meat product; Germany Germany Homo sapiens Gastrointestinal tract Microaerophilic Coccus-shaped Mesophile gram+ Free living None Host, Human oral microflora, Human intestinal microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Propionibacterium BACTERIAL Propionibacterium acnes SK182 SK182 Propionibacterium acnes Unknown Gi05088 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 1747 006015_GCAT 9205 0 Awaiting DNA 0 0 0 USA Human skin Human skin Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Acne Human skin, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Propionibacterium BACTERIAL Propionibacterium acnes J139 J139 Propionibacterium acnes Unknown Gi05089 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 1747 006016_GCAT 9206 0 Awaiting DNA 0 0 0 USA Human skin Human skin Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Acne Human skin, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Propionibacterium BACTERIAL Propionibacterium acnes J165 J165 Propionibacterium acnes Unknown Gi05090 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 1747 006017_GCAT 9207 0 Awaiting DNA 0 0 0 USA Human skin Human skin Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Acne Human skin, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Propionibacterium BACTERIAL Propionibacterium acnes J49 J49 Propionibacterium acnes Unknown Gi05091 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org http://www.jcvi.org/cms/contact/locations/ Medical, Human Microbiome Project (HMP) 1747 006018_GCAT 9208 0 Awaiting DNA 0 0 0 USA Human skin Human skin Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Acne Human skin, Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus gasseri 224-1 224-1 Unknown Gi05092 Genome incomplete Public J. Craig Venter Institute NIH JCVI hmpstrainsjcvi@jcvi.org Medical, Human Microbiome Project (HMP) 1596 006019_GCAT 9209 0 Awaiting DNA 0 0 0 454 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Microaerophilic Rod-shaped Mesophile gram+ Free living Chains None Human vaginal microflora, Host Nonmotile Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Rhodoferax BACTERIAL Rhodoferax antarcticus Ant.Br Ant.Br ATCC 700587 Gi05094 Genome incomplete Public Arizona State Univ NSF Touchman J j.touchman@asu.edu 81479 006021_GCAT 0 In progress 0 0 0 USA Microbial mat, Cape Royds, Antarctica, 1988 1988 Cape Royds, Antarctica -77.549513 166.166825 Facultative Rod-shaped Nonsporulating Psychrotolerant 7 0.7 um 2.5 um gram- Free living Singles None Mat 15 Motile Bacteria Cyanobacteria Oscillatoriales Leptolyngbya BACTERIAL Leptolyngbya amphigranulata Gi05095 Genome incomplete Public Arizona State Univ NSF Touchman J j.touchman@asu.edu 47251 006022_GCAT 0 In progress 0 0 0 USA Free living None Bacteria Firmicutes Clostridia Clostridiales Heliobacteriaceae Heliorestis BACTERIAL Heliorestis convoluta HH HH Gi05096 Genome incomplete Public Arizona State Univ NSF Touchman J j.touchman@asu.edu 356322 006023_GCAT 0 In progress 0 0 0 USA Soil adjacent to Lake Hamra, Wadi Natroun 5/1/2001 Egypt Lake Hamra, Wadi Natroun, Egypt 30.396867 30.316417 Anaerobe Sporulating Mesophile Halotolerant 9 0.6 um variable Green gram- Free living Chains None Soda lakes, Soil 33 Motile Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae Blastochloris BACTERIAL Blastochloris viridis F F CCUG 30818, ATCC 19567, DSM 133 Yes Gi05097 Genome incomplete Public Arizona State Univ NSF Touchman J j.touchman@asu.edu 1079 006024_GCAT 0 In progress 0 0 0 USA Dreisam River, Germany 1960 Germany Freiburg, Germany 47.99964 7.855167 Facultative Rod-shaped Nonsporulating Mesophile 6.5-8 0.7 um 2 um Green gram- Free living Singles None Fresh water 30 Motile Bacteria Firmicutes Clostridia Thermoanaerobacterales Thermoanaerobacterales Family III. Incertae Sedis Caldicellulosiruptor Caldicellulosiruptor lactoaceticus BACTERIAL Caldicellulosiruptor lactoaceticus 6A, DSM 9545 6A, DSM 9545 Caldicellulosiruptor lactoaceticus 6A DSM 9545 Yes Gi05098 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Energy production, Biotechnological, Bioenergy 632516 40219 006025_GCAT 0 Awaiting DNA 0 0 0 USA Alkaline hot spring; Iceland, Hveragerdi Iceland Hveragerdi, Iceland 64 -21.2 Anaerobe Rod-shaped Nonsporulating Thermophile 7.0 gram- Free living Singles, Pairs None Hot spring 79 Cellulose degrader, Nitrogen producer, Biomass degrader Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia BACTERIAL Escherichia coli BW25113 BW25113 Gr00071 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bioenergy, Biotechnological 562 006026_GCAT 0 Awaiting DNA 0 0 0 Illumina USA derivative of strain MM294 except the mutated alleles recA1 and gyrA96 Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human intestinal microflora 37 Motile Eukaryota Streptophyta Liliopsida Poales Poaceae Setaria EUKARYAL Setaria viridis PI 212625 (Afghanistan) PI 212625 (Afghanistan) Gr00072 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 4556 006027_GCAT 0 Awaiting DNA 0 0 0 USA None Eukaryota Streptophyta Liliopsida Poales Poaceae Setaria EUKARYAL Setaria viridis 129.86 (China) 129.86 (China) Gr00073 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 4556 006028_GCAT 0 Awaiting DNA 0 0 0 USA None Eukaryota Streptophyta Liliopsida Poales Poaceae Setaria EUKARYAL Setaria viridis PI 204624 (Turkey) PI 204624 (Turkey) Gr00074 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 4556 006029_GCAT 0 Awaiting DNA 0 0 0 USA None Eukaryota Streptophyta Liliopsida Poales Poaceae Setaria EUKARYAL Setaria viridis PI 204625 PI 204625 Gr00075 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 4556 006030_GCAT 0 Awaiting DNA 0 0 0 USA None Eukaryota Streptophyta Liliopsida Poales Poaceae Setaria EUKARYAL Setaria viridis OK-A10 (Canada) OK-A10 (Canada) Gr00076 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 4556 006031_GCAT 0 Awaiting DNA 0 0 0 USA None Eukaryota Streptophyta Liliopsida Poales Poaceae Setaria EUKARYAL Setaria viridis 81-79 (China) 81-79 (China) Gr00077 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 4556 006032_GCAT 0 Awaiting DNA 0 0 0 USA None Eukaryota Streptophyta Liliopsida Poales Poaceae Setaria EUKARYAL Setaria viridis 1-96 (Germany) 1-96 (Germany) Gr00078 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 4556 006033_GCAT 0 Awaiting DNA 0 0 0 USA None Eukaryota Streptophyta Liliopsida Poales Poaceae Setaria EUKARYAL Setaria viridis PI 202407 (Chile) PI 202407 (Chile) Gr00079 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 4556 006034_GCAT 0 Awaiting DNA 0 0 0 USA None Eukaryota Ascomycota Dothideomycetes Cenococcum Cenococcum geophilum EUKARYAL Cenococcum geophilum Gi05099 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 5570 006035_GCAT 0 Awaiting DNA 0 0 0 USA Eukaryota Basidiomycota Agaricomycetes Russulales Russulaceae Lactarius Lactarius quietus EUKARYAL Lactarius quietus Gi05100 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 111141 006036_GCAT 0 Awaiting DNA 0 0 0 USA Eukaryota Ascomycota Dothideomycetes Trypetheliaceae Trypethelium EUKARYAL Trypethelium sp. Gi05101 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 271823 006037_GCAT 0 Awaiting DNA 0 0 0 USA Eukaryota Ascomycota Dothideomycetes Pleosporales Aigialus Aigialus grandis EUKARYAL Aigialus grandis Gi05102 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 193127 006038_GCAT 0 Awaiting DNA 0 0 0 USA Eukaryota Streptophyta Liliopsida Poales Poaceae Setaria EUKARYAL Setaria viridis Ames 21519 (Russian Federation) Ames 21519 (Russian Federation) Gr00080 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 4556 006039_GCAT 0 Awaiting DNA 0 0 0 USA None Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus iners SPIN1401G-V10 SPIN1401G-V10 Unknown Gi05103 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 147802 006040_GCAT 9210 0 Targeted 0 0 0 USA human vaginal cavity Normal Gram stain score Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Host, Human vaginal microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus iners LACTIN V01V1-A LACTIN V01V1-A Unknown Gi05104 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 147802 006041_GCAT 9211 0 Targeted 0 0 0 USA human vaginal cavity Normal Gram stain score Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Human vaginal microflora, Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus iners LACTIN V03V1-B LACTIN V03V1-B Lactobacillus iners Unknown Gi05105 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 147802 006042_GCAT 9212 0 Targeted 0 0 0 USA human vaginal cavity Normal Gram stain score Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Human vaginal microflora, Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus iners LACTIN V09V1-C LACTIN V09V1-C Lactobacillus iners Unknown Gi05106 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 147802 006043_GCAT 9213 0 Targeted 0 0 0 USA human vaginal cavity Normal Gram stain score Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Human vaginal microflora, Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus iners LACTIN V11V1-D LACTIN V11V1-D Lactobacillus iners Unknown Gi05107 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 147802 006044_GCAT 9214 0 Targeted 0 0 0 USA human vaginal cavity Normal Gram stain score Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Host, Human vaginal microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus iners SPIN 2503D-V10 SPIN 2503D-V10 Lactobacillus iners Unknown Gi05108 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 147802 006045_GCAT 9215 0 Targeted 0 0 0 USA human vaginal cavity BV strain Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Human vaginal microflora, Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus iners LEAF 2053A-B LEAF 2053A-B Lactobacillus iners Unknown Gi05109 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 147802 006046_GCAT 9216 0 Targeted 0 0 0 USA human vaginal cavity BV strain Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Human vaginal microflora, Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus iners LEAF 2052A-D LEAF 2052A-D Lactobacillus iners Unknown Gi05110 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 147802 006047_GCAT 9217 0 Targeted 0 0 0 USA human vaginal cavity BV strain Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Human vaginal microflora, Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus iners LEAF 2062A-H1 LEAF 2062A-H1 Lactobacillus iners Unknown Gi05111 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 147802 006048_GCAT 9218 0 Targeted 0 0 0 USA human vaginal cavity BV strain Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Human vaginal microflora, Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus iners LEAF 2186A-B LEAF 2186A-B Lactobacillus iners Unknown Gi05112 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 147802 006049_GCAT 9219 0 Targeted 0 0 0 USA human vaginal cavity BV strain Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Human vaginal microflora, Host Nonmotile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Dialister BACTERIAL Dialister microaerophilus UPII-345-E UPII-345-E Dialister microaerophilus Unknown Gi05113 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 309120 006050_GCAT 9220 0 Targeted 0 0 0 USA Human vagina BV related organism Homo sapiens Female Urogenital tract Endometrium Anaerobe Rod-shaped Mesophile gram+ Free living Host, Vagina microflora, Human oral microflora Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae BACTERIAL Veillonella sp. UW #7 UW #7 Unknown Gi05114 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 29465 006051_GCAT 9221 0 Targeted 0 0 0 USA Human vagina Homo sapiens Urogenital tract Vaginal Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs, Chains Human vaginal microflora, Host 37 Nonmotile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Megasphaera BACTERIAL Megasphaera elsdenii-like UW #7 UW #7 Unknown Gi05115 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 907 006052_GCAT 9222 0 Targeted 0 0 0 USA Human vagina Homo sapiens Urogenital tract Vaginal Mesophile gram+ Human vaginal microflora, Host Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus iners ATCC 55195 ATCC 55195 Lactobacillus iners ATCC 55195 No Gi05116 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 147802 006053_GCAT 9223 0 Targeted 0 0 0 USA patient with bacterial vaginosis Homo sapiens Female Patient with bacterial vaginosis Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Human vaginal microflora, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Eggerthella BACTERIAL Eggerthella sinensis DSM 16107 DSM 16107 DSM 16107 Yes Gi05117 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 242230 006054_GCAT 9224 0 Targeted 0 0 0 USA Human Blood; Hong Kong China Hong Kong 22.396428 114.109497 Homo sapiens Blood Mesophile Free living Singles None Blood, Human vaginal microflora, Host Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis BACTERIAL Peptoniphilus duerdenii ATCC BAA-1640 ATCC BAA-1640 Unknown Gi05118 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 162289 006055_GCAT 9225 0 Targeted 0 0 0 USA Human vaginal abscess Homo sapiens Urogenital tract Vaginal secretions Vaginal Anaerobe Mesophile gram+ Free living None Human vaginal microflora, Host 37 Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium BACTERIAL Bifidobacterium animalis ACS-248-V-Col8 ACS-248-V-Col8 Unknown Gi05119 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 28025 006056_GCAT 9226 0 Targeted 0 0 0 USA Human vaginal abscess Homo sapiens Female Urogenital tract Vaginal secretions Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Human vaginal microflora, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium BACTERIAL Bifidobacterium bifidum PB2003/035-T3-1 PB2003/035-T3-1 Unknown Gi05120 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1681 006057_GCAT 9227 0 Targeted 0 0 0 USA Human vagina Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Human vaginal microflora, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium BACTERIAL Bifidobacterium breve FB034-05AE FB034-05AE Unknown Gi05121 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1685 006058_GCAT 9228 0 Targeted 0 0 0 USA Human vagina Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host, Human vaginal microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium BACTERIAL Bifidobacterium longum ACS-172-V-Sch4 ACS-172-V-Sch4 Unknown Gi05122 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 216816 006059_GCAT 9229 0 Targeted 0 0 0 USA Human vagina Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host, Human vaginal microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium sp. BACTERIAL Bifidobacterium sp. FB030-04AN FB030-04AN Unknown Gi05123 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 41200 006060_GCAT 9230 0 Targeted 0 0 0 USA Human vagina Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Host, Human vaginal microflora Nonmotile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Dialister BACTERIAL Dialister microaerophilus PB2003/008-T1-3 PB2003/008-T1-3 Dialister microaerophilus Unknown Gi05124 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 309120 006061_GCAT 9231 0 Targeted 0 0 0 USA Human vagina BV related organism Homo sapiens Female Urogenital tract Endometrium Anaerobe Rod-shaped Mesophile gram+ Free living Host, Vagina microflora, Human oral microflora Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae BACTERIAL Acidaminococcus sp. UW #6 UW #6 Unknown Gi05125 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 904 006062_GCAT 9232 0 Targeted 0 0 0 USA Human vagina Homo sapiens Urogenital tract Vaginal Anaerobe Coccus-shaped Mesophile gram+ Free living None Human intestinal microflora, Host Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinobaculum BACTERIAL Actinobaculum massiliae ACS-171-V-Col2 ACS-171-V-Col2 Unknown Gi05126 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 202789 006063_GCAT 9233 0 Targeted 0 0 0 USA Human vagina Homo sapiens Urogenital tract Vaginal Mesophile gram+ Free living Chains, Pairs, Singles Human vaginal microflora, Host Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio BACTERIAL Vibrio mimicus 40243 40243 Gi05128 Genome incomplete Public Technical Univ of Denmark 674 006065_GCAT 0 0 0 0 Denmark Bacteria Synergistetes Synergistetes bacterium SGP1 BACTERIAL Synergistetes bacterium sp. SGP1 SGP1 Synergistetes bacterium SGP1 SGP1 Unknown Gi05130 Genome targeted Public Sanger Institute European Union Turner K akt@sanger.ac.uk Medical, Human Microbiome Project (HMP) 651822 006067_GCAT 9235 0 Targeted 0 0 0 United Kingdom Human oral isolate Homo sapiens Oral Anaerobe Mesophile Grey gram- Free living Human oral microflora, Host 37 Motile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Bifidobacterium BACTERIAL Bifidobacterium pseudocatenulatum D2CA D2CA SGP1 Unknown Gi05131 Genome targeted Public Sanger Institute European Union Turner K akt@sanger.ac.uk Human Microbiome Project (HMP), Medical 28026 006068_GCAT 9236 0 Targeted 0 0 0 United Kingdom Homo sapiens Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Host 37 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinobaculum BACTERIAL Actinobaculum schaalii FB123-CNA-2 FB123-CNA-2 Unknown Gi05132 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 59505 006069_GCAT 9237 0 Targeted 0 0 0 USA Human vagina Homo sapiens Urogenital tract Vaginal Mesophile gram+ Free living Chains, Pairs, Singles Host, Human vaginal microflora Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces BACTERIAL Actinomyces europaeus ACS-120-V-Col10b ACS-120-V-Col10b Unknown Gi05133 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 66228 006070_GCAT 9238 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Host, Human oral microflora Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces BACTERIAL Actinomyces hongkongensis FB160-CNA-8 FB160-CNA-8 Unknown Gi05134 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 178339 006071_GCAT 9239 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Human vaginal microflora, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces BACTERIAL Actinomyces neuii BVS029A5 BVS029A5 Unknown Gi05135 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 33007 006072_GCAT 9240 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Human vaginal microflora, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces BACTERIAL Actinomyces turicensis ACS-279-V-Col4 ACS-279-V-Col4 Unknown Gi05136 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 131111 006073_GCAT 9241 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Human vaginal microflora, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Actinomyces BACTERIAL Actinomyces urogenitalis FB130-CNAB-5 FB130-CNAB-5 Unknown Gi05137 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 103621 006074_GCAT 9242 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Facultative Rod-shaped Nonsporulating Mesophile gram+ Free living Human vaginal microflora, Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Aerococcaceae Aerococcus BACTERIAL Aerococcus urinae ACS-120-V-Col10a ACS-120-V-Col10a Unknown Gi05138 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1376 006075_GCAT 9243 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs Host, Human vaginal microflora 37 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Bifidobacteriales Bifidobacteriaceae Alloscardovia BACTERIAL Alloscardovia omnicolens ACS-060-V-Sch10 ACS-060-V-Sch10 Unknown Gi05139 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 419015 006076_GCAT 9244 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs Host, Human vaginal microflora 37 Nonmotile Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Anaerococcus BACTERIAL Aerococcus vaginalis BVS034A5a BVS034A5a Unknown Gi05140 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 33037 006077_GCAT 9245 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs Human vaginal microflora, Host 37 Nonmotile Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Anaerococcus BACTERIAL Aerococcus hydrogenalis ACS-090-V-Sch5 ACS-090-V-Sch5 Unknown Gi05141 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 33029 006078_GCAT 9246 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs Host, Human vaginal microflora 37 Nonmotile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Anaeroglobus BACTERIAL Anaeroglobus geminatus ACS-068-V-Col6 ACS-068-V-Col6 Unknown Gi05142 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 156456 006079_GCAT 9247 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs Host, Human vaginal microflora 37 Nonmotile Bacteria Actinobacteria Actinobacteria (class) Coriobacteriales Coriobacteriaceae Atopobium BACTERIAL Atopobium vaginae PB2003/189-T1-4 PB2003/189-T1-4 Unknown Gi05143 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 82135 006080_GCAT 9248 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Mesophile gram+ Free living Host, Human vaginal microflora Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus BACTERIAL Bacillus circulans FB077-07 FB077-07 Unknown Gi05144 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1397 006081_GCAT 9249 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Microaerophilic Rod-shaped Mesophile gram+ Free living None Human vaginal microflora, Host Nonmotile Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus BACTERIAL Bacillus macroides FB049-03 FB049-03 Unknown Gi05145 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 33935 006082_GCAT 9250 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Microaerophilic Rod-shaped Mesophile gram+ Free living None Host, Human vaginal microflora Nonmotile Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae BACTERIAL Bacteroides ureolyticus ACS-172-V-Col6 ACS-172-V-Col6 Gi05146 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 827 006083_GCAT 9251 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Anaerobe Mesophile Free living Host, Human vaginal microflora Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium amycolatum ACS-175-V-Col7 ACS-175-V-Col7 Unknown Gi05147 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 43765 006084_GCAT 9252 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Oral infection Host, Human vaginal microflora 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium coyleae CA-CA-3 CA-CA-3 Unknown Gi05148 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 53374 006085_GCAT 9253 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Oral infection Host, Human vaginal microflora 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium aurimucosum BVS060-4 BVS060-4 Unknown Gi05149 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 169292 006086_GCAT 9254 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Oral infection Human vaginal microflora, Host 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Corynebacteriaceae Corynebacterium BACTERIAL Corynebacterium pseudogenitalium ACS-310-V-Sch4 ACS-310-V-Sch4 Unknown Gi05150 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 38303 006087_GCAT 9255 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles Oral infection Host, Human vaginal microflora 37 Nonmotile Catalase positive Chemoorganotroph Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae BACTERIAL Dialister sp. ACS-043-V-Sch3 ACS-043-V-Sch3 Unknown Gi05151 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 39948 006088_GCAT 9256 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Mesophile gram+ Free living Vagina microflora, Human vaginal microflora, Host Bacteria Firmicutes Bacilli Lactobacillales Aerococcaceae Eremococcus BACTERIAL Eremococcus coleocola ACS-139-V-Col8 ACS-139-V-Col8 Gi05152 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 88132 006089_GCAT 9257 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Mesophile Free living Singles None Host, Human vaginal microflora Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium BACTERIAL Eubacterium tenue UW #4 UW #4 Gi05153 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1737 006090_GCAT 9258 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Mesophile gram+ Free living None Human vaginal microflora, Host Bacteria Firmicutes Clostridia Clostridiales Eubacteriaceae Eubacterium BACTERIAL Eubacterium saburreum UW #5 UW #5 Gi05154 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 467210 006091_GCAT 9259 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Mesophile gram+ Free living None Human vaginal microflora, Host Bacteria Firmicutes Bacilli Lactobacillales Aerococcaceae Facklamia BACTERIAL Facklamia hominis ACS-120-V-Sch10 ACS-120-V-Sch10 Gi05155 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 178214 006092_GCAT 9260 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Mesophile Free living None Host, Human vaginal microflora Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Finegoldia BACTERIAL Finegoldia magna ACS-171-V-Col3 ACS-171-V-Col3 Gi05156 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1260 006093_GCAT 9261 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Mesophile Free living None Human vaginal microflora, Host Bacteria Fusobacteria Fusobacteria (class) Fusobacteriales Fusobacteriaceae Fusobacterium BACTERIAL Fusobacterium nucleatum ACS-056-V-Sch15 ACS-056-V-Sch15 Unknown Gi05157 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 851 006094_GCAT 9262 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Anaerobe Filament-shaped Nonsporulating Mesophile gram- Free living Host, Human vaginal microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus coleohominis PB2003/024-T1-1a PB2003/024-T1-1a Lactobacillus coleohominis Gi05158 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 181675 006095_GCAT 9263 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Human vaginal microflora, Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus delbrueckii PB2003/044-T3-4 PB2003/044-T3-4 Lactobacillus delbrueckii Gi05159 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 1584 006096_GCAT 9264 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Human vaginal microflora, Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus oris PB2003/013-T2-3 PB2003/013-T2-3 Lactobacillus oris Gi05161 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1632 006097_GCAT 9265 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Host, Human vaginal microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus plantarum ACS-072-V-CNA3 ACS-072-V-CNA3 Lactobacillus plantarum Gi05162 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 1590 006098_GCAT 9266 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Host, Human vaginal microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus pontis PB2003/159-T1-2 PB2003/159-T1-2 Lactobacillus pontis Gi05163 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 35787 006099_GCAT 9267 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Human vaginal microflora, Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus reuteri ACS-120-V-Col4b (2) ACS-120-V-Col4b (2) Lactobacillus reuteri Gi05164 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1598 006100_GCAT 9268 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Host, Human vaginal microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus salivarius ACS-116-V-Col5a ACS-116-V-Col5a Lactobacillus salivarius Gi05165 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1624 006101_GCAT 9269 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Host, Human vaginal microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus jensenii Lj190-2 Lj190-2 Lactobacillus jensenii Gi05166 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 109790 006102_GCAT 9270 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female child-bearing age Healthy Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Host, Human vaginal microflora Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus jensenii Lj190-2M1 Lj190-2M1 Lactobacillus jensenii Gi05167 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 109790 006103_GCAT 9271 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female child-bearing age Healthy Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Human vaginal microflora, Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus jensenii Lj190-2M2 Lj190-2M2 Lactobacillus jensenii Gi05168 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 109790 006104_GCAT 9272 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female child-bearing age Healthy Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Human vaginal microflora, Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus jensenii Lj190-2M4 Lj190-2M4 Lactobacillus jensenii Gi05169 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 109790 006105_GCAT 9273 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female child-bearing age Healthy Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Human vaginal microflora, Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus crispatus Lc213-1 Lc213-1 Lactobacillus crispatus Gi05170 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 47770 006106_GCAT 9274 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female child-bearing age Healthy Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Human vaginal microflora, Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus crispatus Lc213-1M1 Lc213-1M1 Lactobacillus crispatus Gi05171 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 47770 006107_GCAT 9275 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female child-bearing age Healthy Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Human vaginal microflora, Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus crispatus Lc213-1M2 Lc213-1M2 Lactobacillus crispatus Gi05172 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 47770 006108_GCAT 9276 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female child-bearing age Healthy Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Human vaginal microflora, Host Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus BACTERIAL Lactobacillus crispatus Lc213-1M3 Lc213-1M3 Lactobacillus crispatus Gi05173 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 47770 006109_GCAT 9277 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female child-bearing age Healthy Urogenital tract Vaginal Facultative Rod-shaped Mesophile gram+ Free living Chains None Human vaginal microflora, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Mobiluncus BACTERIAL Mobiluncus mulieris FB024-16 FB024-16 Mobiluncus mulieris Unknown Gi05174 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 2052 006110_GCAT 9278 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Mesophile gram+ Free living Human vaginal microflora, Host Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Actinomycetaceae Mobiluncus BACTERIAL Mobiluncus curtisii ACS-171-V-Col4a ACS-171-V-Col4a Mobiluncus curtisii Unknown Gi05175 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 2051 006111_GCAT 9279 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Mesophile gram+ Free living Human vaginal microflora, Host Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XIII. Incertae Sedis BACTERIAL Mogibacterium sp. FB020-02b FB020-02b ATCC 700697 Yes Gi05176 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 86331 006112_GCAT 9280 0 Targeted 0 0 0 454, Sanger USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living None Host, Human vaginal microflora Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma BACTERIAL Mycoplasma hominis BVS058A4 BVS058A4 ` Mycoplasma hominis Gi05177 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 2098 006113_GCAT 9281 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Facultative Sphere-shaped Nonsporulating Mesophile gram- Free living Singles Human vaginal microflora, Host Nonmotile Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria sp. BACTERIAL Neisseria sp. ACS-216-V-Col6b ACS-216-V-Col6b Unknown Gi05178 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 192066 006114_GCAT 9282 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Aerobe Coccus-shaped Nonsporulating Mesophile gram- Free living Pairs None Human vaginal microflora, Host Nonmotile Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Peptococcus BACTERIAL Peptococcus niger ACS-172-V-Col5 ACS-172-V-Col5 Unknown Gi05179 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 2741 006115_GCAT 9283 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Mesophile gram- Free living Human vaginal microflora, Host Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Peptoniphilus BACTERIAL Peptoniphilus indolicus ACS-025-V-Col1 ACS-025-V-Col1 Peptoniphilus indolicus Unknown Gi05180 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 33030 006116_GCAT 9284 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Anaerobe Mesophile gram+ Free living None Human vaginal microflora, Host 37 Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Peptoniphilus BACTERIAL Peptoniphilus asaccharolyticus ACS-315-V-Sch6 ACS-315-V-Sch6 Peptoniphilus asaccharolyticus Unknown Gi05181 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1258 006117_GCAT 9285 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Mesophile gram+ Free living None Human vaginal microflora, Host 37 Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Peptoniphilus BACTERIAL Peptoniphilus harei ACS-146-V-Sch2b ACS-146-V-Sch2b Peptoniphilus harei Unknown Gi05182 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 54005 006118_GCAT 9286 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Mesophile gram+ Free living None Human vaginal microflora, Host 37 Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Peptoniphilus BACTERIAL Peptoniphilus lacrimalis ACS-171-V-Sch10b ACS-171-V-Sch10b Peptoniphilus lacrimalis Unknown Gi05183 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 33031 006119_GCAT 9287 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Mesophile gram+ Free living None Human vaginal microflora, Host 37 Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis BACTERIAL Peptoniphilus sp. ACS-146-V-Sch6a ACS-146-V-Sch6a Unknown Gi05184 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 162289 006120_GCAT 9288 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Mesophile gram+ Free living None Human vaginal microflora, Host 37 Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Finegoldia BACTERIAL Finegoldia magna BVS033A4 BVS033A4 Finegoldia magna Gi05185 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 1260 006121_GCAT 9289 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Mesophile Free living None Human vaginal microflora, Host Bacteria Firmicutes Clostridia Clostridiales Clostridiales Family XI. Incertae Sedis Anaerococcus BACTERIAL Aerococcus prevotii FB007-02A FB007-02A Anaerococcus prevotii Unknown Gi05186 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 33034 006122_GCAT 9290 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Pairs Human vaginal microflora, Host 37 Nonmotile Bacteria Firmicutes Clostridia Clostridiales Peptostreptococcaceae Peptostreptococcus Peptostreptococcus sp. BACTERIAL Peptostreptococcus sp. BVS030A6 BVS030A6 Unknown Gi05187 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 1262 006123_GCAT 9291 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Coccus-shaped Mesophile gram+ Free living Human vaginal microflora, Host Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas BACTERIAL Porphyromonas uenonis FB145-CNA-6A FB145-CNA-6A Porphyromonas uenonis Unknown Gi05188 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 281920 006124_GCAT 9292 HOMD: tax_284 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Mesophile gram- Free living Human vaginal microflora, Host Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas BACTERIAL Porphyromonas endodontalis Porphyromonas endodontalis Unknown Gi05189 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 28124 006125_GCAT 9293 HOMD: tax_284 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Mesophile gram- Free living Human vaginal microflora, Host Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas BACTERIAL Porphyromonas asaccharolytica Porphyromonas asaccharolytica Unknown Gi05190 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 28123 006126_GCAT 9294 HOMD: tax_284 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Mesophile gram- Free living Host, Human vaginal microflora Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella bivia ACS-045-V-Col2 ACS-045-V-Col2 Prevotella bivia Unknown Gi05191 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 28125 006127_GCAT 9295 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Human vaginal microflora, Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella disiens FB035-09AN FB035-09AN Prevotella disiens Unknown Gi05192 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 28130 006128_GCAT 9296 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Human vaginal microflora, Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella intermedia UW #2 UW #2 Prevotella intermedia Unknown Gi05193 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 28131 006129_GCAT 9297 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human vaginal microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella timonensis ACS-255-V-Col3 ACS-255-V-Col3 Prevotella timonensis Unknown Gi05194 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 386414 006130_GCAT 9298 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human vaginal microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella melaninogenica Prevotella melaninogenica Unknown Gi05195 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 28132 006131_GCAT 9299 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Human vaginal microflora, Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella buccae UW #1 UW #1 Prevotella buccae Unknown Gi05196 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 28126 006132_GCAT 9300 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Human vaginal microflora, Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella oulorum UW #3 UW #3 Prevotella oulorum Unknown Gi05197 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 28136 006133_GCAT 9301 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Human vaginal microflora, Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella amnii Prevotella amnii Unknown Gi05198 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 419005 006134_GCAT 9302 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Human vaginal microflora, Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella denticola Prevotella denticola Unknown Gi05199 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 28129 006135_GCAT 9303 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Human vaginal microflora, Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella timonensis Prevotella timonensis Unknown Gi05200 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 386414 006136_GCAT 9304 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Human vaginal microflora, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Propionibacterium BACTERIAL Propionibacterium granulosum ACS-070-V-Col3 ACS-070-V-Col3 Propionibacterium granulosum Unknown Gi05201 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 33011 006137_GCAT 9305 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Opportunistic infection Human vaginal microflora, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Propionimicrobium BACTERIAL Propionimicrobium lymphophilum ACS-093-V-Sch5 ACS-093-V-Sch5 Propionimicrobium lymphophilum Unknown Gi05202 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 33012 006138_GCAT 9306 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Opportunistic infection Host, Human vaginal microflora Nonmotile Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Sphingobacteriaceae Sphingobacterium BACTERIAL Sphingobacterium faecium FB129-CNAB-4 FB129-CNAB-4 Sphingobacterium faecium Gi05203 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 34087 006139_GCAT 9307 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Mesophile gram- Free living Human vaginal microflora, Host Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus lugdunensis ACS-027-V-Sch2 ACS-027-V-Sch2 Staphylococcus lugdunensis Unknown Gi05204 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 28035 006140_GCAT 9308 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Host, Human vaginal microflora 30 - 37 Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus pasteuri ACS-301-V-Sch3b ACS-301-V-Sch3b Staphylococcus pasteuri Unknown Gi05205 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 45972 006141_GCAT 9309 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Singles, Clusters Human vaginal microflora, Host 30 - 37 Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus simulans ACS-120-V-Sch1 ACS-120-V-Sch1 Staphylococcus simulans Unknown Gi05206 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 1286 006142_GCAT 9310 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Human vaginal microflora, Host 30 - 37 Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus aureus Strain 1 Strain 1 Staphylococcus aureus Unknown Gi05207 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1280 006143_GCAT 9311 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Urogenital tract Vaginal Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Host, Human vaginal microflora 30 - 37 Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus aureus J9 J9 Staphylococcus aureus Unknown Gi05208 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1280 006144_GCAT 9312 0 Targeted 0 0 0 USA human vaginal cavity tst +; methicillin and clindamycin resistant Homo sapiens Female Healthy Urogenital tract Vaginal Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Human vaginal microflora, Host 30 - 37 Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus aureus J10 J10 Staphylococcus aureus Unknown Gi05209 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1280 006145_GCAT 9313 0 Targeted 0 0 0 USA human vaginal cavity tst (+): methicillin resistant Homo sapiens Female Healthy Urogenital tract Vaginal Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Human vaginal microflora, Host 30 - 37 Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus aureus NAP 1 NAP 1 Staphylococcus aureus Unknown Gi05210 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 1280 006146_GCAT 9314 0 Targeted 0 0 0 USA human vaginal cavity tst + MSSA Homo sapiens Female Healthy Urogenital tract Vaginal Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Singles, Clusters Host, Human vaginal microflora 30 - 37 Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus aureus NAP 2 NAP 2 Staphylococcus aureus Unknown Gi05211 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1280 006147_GCAT 9315 0 Targeted 0 0 0 USA human vaginal cavity tst + MSSA Homo sapiens Female Healthy Urogenital tract Vaginal Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Human vaginal microflora, Host 30 - 37 Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus aureus NAP 3 NAP 3 Staphylococcus aureus Unknown Gi05212 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1280 006148_GCAT 9316 0 Targeted 0 0 0 USA human vaginal cavity tst + MSSA Homo sapiens Female Healthy Urogenital tract Vaginal Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Human vaginal microflora, Host 30 - 37 Nonmotile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus BACTERIAL Staphylococcus aureus NAP 4 NAP 4 Staphylococcus aureus Unknown Gi05213 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1280 006149_GCAT 9317 0 Targeted 0 0 0 USA human vaginal cavity tst + MSSA Homo sapiens Female Healthy Urogenital tract Vaginal Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Human vaginal microflora, Host 30 - 37 Nonmotile Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus urinalis FB127-CNA-2 FB127-CNA-2 Streptococcus urinalis Unknown Gi05214 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 149016 006150_GCAT 9318 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Coccus-shaped Mesophile gram+ Free living Human vaginal microflora, Host Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus equinus ATCC 700338 ATCC 700338 Streptococcus equinus ATCC 700338 No Gi05215 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 1335 006151_GCAT 9319 0 Targeted 0 0 0 USA synovial fluid from knee of a 70 year-old man with septic arthritis 1996 Homo sapiens Man 70 year old Man with septic arthritis Anaerobe Coccus-shaped Mesophile gram+ Free living Human vaginal microflora, Host Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus BACTERIAL Streptococcus pseudoporcinus Streptococcus pseudoporcinus Unknown Gi05216 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 361101 006152_GCAT 9320 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Anaerobe Coccus-shaped Mesophile gram+ Free living Human vaginal microflora, Host Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Veillonella BACTERIAL Veillonella atypica ACS-049-V-Sch6 ACS-049-V-Sch6 Veillonella atypica Unknown Gi05217 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 39777 006153_GCAT 9321 0 Targeted 0 0 0 USA Human vagina Homo sapiens Female Urogenital tract Vaginal Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Human vaginal microflora, Host 37 Nonmotile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Veillonella BACTERIAL Veillonella montpellierensis ACS-056-V-Sch5 ACS-056-V-Sch5 Veillonella montpellierensis Unknown Gi05218 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 187328 006154_GCAT 9322 0 Targeted 0 0 0 USA Human vagina Homo sapiens Female Urogenital tract Vaginal Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Human vaginal microflora, Host 37 Nonmotile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Veillonella BACTERIAL Veillonella parvula ACS-068-V-Sch12 ACS-068-V-Sch12 Veillonella parvula Unknown Gi05219 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 29466 006155_GCAT 9323 0 Targeted 0 0 0 USA Human vagina Homo sapiens Female Urogenital tract Vaginal Anaerobe Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Human vaginal microflora, Host 37 Nonmotile Eukaryota Ascomycota Saccharomycetes Saccharomycetales Candida EUKARYAL Candida albicans Unknown Gi05220 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 5476 006156_GCAT 9324 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Oral infection, Vaginal infection Host, Human vaginal microflora Pathogen Eukaryota Ascomycota Saccharomycetes Saccharomycetales Candida EUKARYAL Candida albicans Unknown Gi05221 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 5476 006157_GCAT 9325 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Oral infection, Vaginal infection Human vaginal microflora, Host Pathogen Eukaryota Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Nakaseomyces EUKARYAL Candida glabrata Unknown Gi05222 Genome targeted Public NIH Human Microbiome Project (HMP), Medical 5478 006158_GCAT 9326 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Vaginal infection, Oral infection Human vaginal microflora, Host Pathogen Eukaryota Ascomycota Saccharomycetes Saccharomycetales Candida EUKARYAL Candida albicans Unknown Gi05224 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 5476 006159_GCAT 9327 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Oral infection, Vaginal infection Human vaginal microflora, Host Pathogen Eukaryota Ascomycota Saccharomycetes Saccharomycetales Candida EUKARYAL Candida albicans Unknown Gi05225 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 5476 006160_GCAT 9328 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Oral infection, Vaginal infection Human vaginal microflora, Host Pathogen Eukaryota Ascomycota Saccharomycetes Saccharomycetales Candida Candida tropicalis EUKARYAL Candida tropicalis Unknown Gi05226 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 5482 006161_GCAT 9329 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Vaginal infection, Oral infection Human vaginal microflora, Host Pathogen Eukaryota Ascomycota Saccharomycetes Saccharomycetales Candida EUKARYAL Candida parapsilosis Unknown Gi05227 Genome targeted Public NIH Medical, Human Microbiome Project (HMP) 5480 006162_GCAT 9330 0 Targeted 0 0 0 USA human vaginal cavity Homo sapiens Female Urogenital tract Vaginal Vaginal infection, Oral infection Human vaginal microflora, Host Pathogen Bacteria Nitrospirae Nitrospira (class) Nitrospirales Nitrospiraceae Leptospirillum BACTERIAL Leptospirillum rubarum Gi05228 Metagenome incomplete Public DOE Joint Genome Institute DOE Banfield JF jbanfield@berkeley.edu Biotechnological 419542 18795 006163_GCAT 0 DS180869, DS180876 Draft 960 0 0 Sanger USA "Richmond Mine, Iron Mountain CA from the Ultra Back A (UBA) site in June 2005" June 2005 USA Richmond Mine, Iron Mountain CA from the Ultra Back A (UBA) site in June 2005 36.778261 -119.417932 Mesophile gram- Free living None Fresh water Acidophile, Iron oxidizer, Pink-colored, Biofilm unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil microbial communities from Great Prairies from Great Prairies Gm00189 Metagenome incomplete Public DOE Joint Genome Institute DOE Jansson J JRJansson@lbl.gov Environmental 006170_GCAT 0 In progress 0 0 0 USA Great Prairie Soil samples USA None Soil unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Bankia setacea microbiome Shipworm symbiont community Gm00190 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov Bioenergy, Biotechnological 256318 006171_GCAT 0 In progress 0 0 0 USA Bankia setacea Mesophile None Sediment Symbiont, Sulfate reducer unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Saline water microbial communities from Great Salt Lake from Great Salt Lake Great Salt Lake metagenome Gm00191 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov Biotechnological 006172_GCAT 0 In progress 0 0 0 USA Great Salt Lake USA Great Salt Lake 41.454358 -112.666397 Bankia setacea Mesophile None Sediment Symbiont, Sulfate reducer unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Gut microbiome of gnotobiotic Mouse of gnotobiotic Mouse with Humanized gut Metagenome from Humanized Mouse Gut Microbiom Gm00192 Metagenome incomplete Public Washington Univ NIH Medical 410661 39859 006173_GCAT 0 In progress 0 0 0 USA Gut of a human donor and gnotobiotic mouse recipients Mus musculus 10090 Humanized gut Gastrointestinal tract Gut None Mouse Gut, Host unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Porites compressa microbiome and viriome following stress following stress Metagenomes from Porites compressa Following Stress genome Gm00193 Metagenome complete Public SDSU Vega Thurber R rvegathurber@gmail.com 2009-04-22 Environ Microbiology 11(8):2148-63 496922 28595 006174_GCAT 0 Complete 0 0 0 454 USA Viral and microbial metagenomes were isolated from Porites compressa during the following stressor experiments: temperature, dissolved organic carbon, reduced pH, and nutrients. USA Porites compressa unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine planktonic microbial community from Bermuda Time Series BATS Station from Bermuda Time Series BATS Station Sargasso Sea Planktonic Microbial Community - Bermuda Time Series BATS Station Gm00196 Metagenome incomplete Public DOE Joint Genome Institute DOE Evolutionary, Environmental 40125 006178_GCAT 0 In progress 0 0 0 USA Bermuda Time Series BATS Station 31.67 -64.17 None Marine unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Microbialite layer microbial community from Cuatro Cienegas from Cuatro Cienegas Gm00199 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov Environmental 006182_GCAT 0 Awaiting DNA 0 0 0 USA Cuatro Ci?negas, Mexico Mexico Cuatro Ci?negas, Mexico 26.983333 -102.05 None Sediment unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Freshwater microbial communities from Antarctic Deep Lake from Antarctic Deep Lake Antarctic Lakes Metagenome Gm00200 Metagenome incomplete Public DOE Joint Genome Institute DOE Cavicchioli, R 006183_GCAT 0 In progress 500000 0 0 USA unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Saline water microbial communities from a Tibetan plateau lake from a Tibetan plateau lake High mountain lake microbiome Gm00204 Metagenome incomplete Proprietary Univ of Illinois at Urbana-Champaign Wen Tso Liu wtliu@illinois.edu Biogeochemical, Ecological, Carbon cycle 006219_GCAT 0 Draft Level 1: Standard Draft not assembled 0 0 0 454-Titanium USA Surface waters from Qinghai Lake in Tibetan Plateau Surface water 06-SEP-08 China Qinghai Lake in Tibetan Plateau 36.381 100.218 3197 1 m Lake, Salinewater Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis BACTERIAL Streptococcus suis 05HAS68 05HAS68 Streptococcus suis 05HAS68 Gi05231 Genome incomplete Public Beijing Institute of Genomics Animal Pathogen, Swine Pathogen, Medical, Human Pathogen 672190 40301 006184_GCAT 0 In progress 0 0 0 China Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Chains, Pairs Endocarditis, Arthritis, Septicemia, Meningitis Host Nonmotile Pathogen Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli 1412 1412 Escherichia coli 1412 Unknown Gi05232 Genome incomplete Public Univ of Maryland, IGS Medical 670906 40293 006185_GCAT 0 In progress 0 0 0 USA Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Human skin, Host 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli 1357 1357 Escherichia coli 1357 Unknown Gi05233 Genome incomplete Public Univ of Maryland, IGS Medical 670905 40291 006186_GCAT 0 In progress 0 0 0 USA Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Human skin, Host 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli 1180 1180 Escherichia coli 1180 Unknown Gi05234 Genome incomplete Public Univ of Maryland, IGS Medical 670904 40289 006187_GCAT 0 In progress 0 0 0 USA Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Human skin, Host 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli TX1999 TX1999 Escherichia coli TX1999 Unknown Gi05235 Genome incomplete Public Univ of Maryland, IGS Medical 670903 40287 006188_GCAT 0 In progress 0 0 0 USA Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Human skin, Host 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli 98NK2 98NK2 Escherichia coli 98NK2 Unknown Gi05236 Genome incomplete Public Univ of Maryland, IGS Medical 670902 40285 006189_GCAT 0 In progress 0 0 0 USA Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Human skin, Host 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli GEMS_EPEC1 GEMS_EPEC1 Escherichia coli GEMS_EPEC1 Unknown Gi05237 Genome incomplete Public Univ of Maryland, IGS Medical 670901 40283 006190_GCAT 0 In progress 0 0 0 USA Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Human skin, Host 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli E74/68 E74/68 Escherichia coli E74/68 Unknown Gi05238 Genome incomplete Public Univ of Maryland, IGS Medical 670900 40281 006191_GCAT 0 In progress 0 0 0 USA Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Human skin, Host 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli RN587/1 RN587/1 Escherichia coli RN587/1 Unknown Gi05239 Genome incomplete Public Univ of Maryland, IGS Medical 670899 40279 006192_GCAT 0 In progress 0 0 0 USA Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Human skin, Host 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli E851/71 E851/71 Escherichia coli E851/71 Unknown Gi05240 Genome incomplete Public Univ of Maryland, IGS Medical 670898 40277 006193_GCAT 0 In progress 0 0 0 USA Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human skin 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli 2362-75 2362-75 Escherichia coli 2362-75 Unknown Gi05241 Genome incomplete Public Univ of Maryland, IGS Medical 670897 40275 006194_GCAT 0 In progress 0 0 0 USA Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs None Host, Human skin 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli EPECa12 EPECa12 Escherichia coli EPECa12 Unknown Gi05242 Genome incomplete Public Univ of Maryland, IGS Medical 670896 40273 006195_GCAT 0 In progress 0 0 0 USA Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human skin 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli EPECa11 EPECa11 Escherichia coli EPECa11 Unknown Gi05243 Genome incomplete Public Univ of Maryland, IGS Medical 670895 40271 006196_GCAT 0 In progress 0 0 0 USA Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human skin 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli E128010 E128010 Escherichia coli E128010 Unknown Gi05244 Genome incomplete Public Univ of Maryland, IGS Medical 670894 40269 006197_GCAT 0 In progress 0 0 0 USA Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Human skin, Host 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli EPECa14 EPECa14 Escherichia coli EPECa14 Unknown Gi05245 Genome incomplete Public Univ of Maryland, IGS Medical 670893 40267 006198_GCAT 0 In progress 0 0 0 USA Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human skin 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli 3431 3431 Escherichia coli 3431 Unknown Gi05246 Genome incomplete Public Univ of Maryland, IGS Medical 670892 40265 006199_GCAT 0 In progress 0 0 0 USA Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human skin 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli LT-62 LT-62 Escherichia coli LT-62 Unknown Gi05247 Genome incomplete Public Univ of Maryland, IGS Medical 670891 40263 006200_GCAT 0 In progress 0 0 0 USA Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Human skin, Host 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli LT-68 LT-68 Escherichia coli LT-68 Unknown Gi05248 Genome incomplete Public Univ of Maryland, IGS Medical 670890 40261 006201_GCAT 0 In progress 0 0 0 USA Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Human skin, Host 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli 929-78 929-78 Escherichia coli 929-78 Unknown Gi05249 Genome incomplete Public Univ of Maryland, IGS Medical 670889 40259 006202_GCAT 0 In progress 0 0 0 USA Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Human skin, Host 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli 1827-70 1827-70 Escherichia coli 1827-70 Unknown Gi05250 Genome incomplete Public Univ of Maryland, IGS Medical 670888 40257 006203_GCAT 0 In progress 0 0 0 USA Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs None Host, Human skin 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli LT-41 LT-41 Escherichia coli LT-41 Unknown Gi05251 Genome incomplete Public Univ of Maryland, IGS Medical 670887 40255 006204_GCAT 0 In progress 0 0 0 USA Homo sapiens Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Human skin 37 Motile Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus WKZ-1 WKZ-1 Staphylococcus aureus subsp. aureus WKZ-1 Gi05252 Genome incomplete Public Univ of Utrecht Medical, Human Pathogen 672189 40253 006205_GCAT 0 In progress 0 0 0 Netherlands Homo sapiens Airways Nasal Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Singles, Clusters Host, Human airways 30 - 37 Nonmotile Eukaryota Chlorophyta Prasinophyceae Mamiellales Ostreococcus Ostreococcus tauri EUKARYAL Ostreococcus tauri RCC 1116 RCC 1116 Gr00081 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Evolutionary 70448 006206_GCAT 0 Awaiting DNA 0 0 0 USA Coccus-shaped Mesophile None Fresh water Carbon fixation, Small Photosynthetic Eukaryota Chlorophyta Prasinophyceae Mamiellales Ostreococcus Ostreococcus tauri EUKARYAL Ostreococcus tauri RCC 1559 RCC 1559 Gr00082 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Evolutionary 70448 006207_GCAT 0 Awaiting DNA 0 0 0 USA Coccus-shaped Mesophile None Fresh water Carbon fixation, Small Photosynthetic Eukaryota Chlorophyta Prasinophyceae Mamiellales Ostreococcus Ostreococcus tauri EUKARYAL Ostreococcus tauri RCC 1114 RCC 1114 Gr00083 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Evolutionary 70448 006208_GCAT 0 Awaiting DNA 0 0 0 USA Coccus-shaped Mesophile None Fresh water Carbon fixation, Small Photosynthetic Eukaryota Chlorophyta Prasinophyceae Mamiellales Ostreococcus Ostreococcus tauri EUKARYAL Ostreococcus tauri RCC 1115 RCC 1115 Gr00084 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Evolutionary 70448 006209_GCAT 0 Awaiting DNA 0 0 0 USA Coccus-shaped Mesophile None Fresh water Carbon fixation, Small Photosynthetic Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Desulfitobacterium BACTERIAL Desulfitobacterium dichloroeliminans LMG P21439 LMG P21439 LMG P21439 Gr00086 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 233055 006211_GCAT 0 Awaiting DNA 0 0 0 USA Anaerobe Rod-shaped Sporulating Mesophile gram- Free living Pairs, Singles, Chains None Host Motile Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Desulfitobacterium BACTERIAL Desulfitobacterium metallireducens Gr00087 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 142877 006212_GCAT 0 Awaiting DNA 0 0 0 USA Anaerobe Rod-shaped Sporulating Mesophile gram- Free living Pairs, Singles, Chains None Host Motile Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Desulfitobacterium BACTERIAL Desulfitobacterium hafniense TCP-A TCP-A DSM 13557 Gr00088 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 49338 006213_GCAT 0 Awaiting DNA 0 0 0 USA River sediment; Germany, river Saale Germany river Saale, Germany Anaerobe Rod-shaped Sporulating Mesophile gram- Free living Chains, Pairs, Singles None Sediment Motile Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Desulfitobacterium BACTERIAL Desulfitobacterium sp. PCE1 PCE1 DSM 10344 No Gr00089 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 146907 006214_GCAT 0 Awaiting DNA 0 0 0 USA Soil; The Netherlands Netherlands Anaerobe Rod-shaped Sporulating Mesophile gram- Free living Pairs, Singles, Chains None Soil Motile Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Desulfitobacterium BACTERIAL Desulfitobacterium hafniense D7 D7 No Gr00090 Resequencing incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org 49338 006215_GCAT 0 Awaiting DNA 0 0 0 USA Soil; The Netherlands Netherlands Anaerobe Rod-shaped Sporulating Mesophile gram- Free living Chains, Pairs, Singles None Soil Motile unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Sediment microbial communities from Lake Washington from Lake Washington for Methane and Nitrogen Cycles Lake Washington Sediment Methane and Nitrogen Cycles Gm00201 Metagenome incomplete Public DOE Joint Genome Institute DOE Chistoserdova L milachis@u.washington.edu 006216_GCAT 0 Awaiting DNA 0 0 0 USA sediment from Lake Washington, Seattle USA Lake Washington, Seattle 47.676484 -122.228394 None Sediment, Lake, Fresh water unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Egg capsule microbial community from Earthworm from Earthworm Earthworm egg capsule bacterial community Gm00202 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov 006217_GCAT 0 Awaiting DNA 0 0 0 USA Earthworm egg capsule None unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Crop microbiome from Hoatzin from Hoatzin Hoatzin crop microbiome Gm00203 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov 006218_GCAT 0 In progress 0 0 0 USA Hoatzin Oral Crop None Host unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Marine microbial communities from Subarctic Pacific Ocean from Subarctic Pacific Ocean Subarctic Pacific Ocean Communities Gm00205 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov Biotechnological 006220_GCAT 0 Awaiting DNA 0 0 0 USA Subarctic Pacific Ocean None Marine unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Ice accretion microbial communities from Lake Vostok from Lake Vostok Lake Vostok accretion ice Gm00206 Metagenome incomplete Public DOE Joint Genome Institute DOE Hugenholtz P PHugenholtz@lbl.gov 006221_GCAT 0 In progress 0 0 0 USA Lake Vostok accretion ice Russia Lake Vostok -78.445169 106.870651 None Fresh water, Lake unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Mat microbial communities from Kolumbo Volcano from Kolumbo Volcano Gm00207 Metagenome incomplete Public DOE Joint Genome Institute, Hellenic Center for Marine Research DOE Kyrpides N nckyrpides@lbl.gov 006222_GCAT 0 Awaiting DNA 0 0 0 USA Kolumbo Volcano, Greece Greece Kolumbo Volcano, Greece 36.5 25.45 None Mat unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Sediment microbial communities from Etoliko Lagoon from Etoliko Lagoon Gm00208 Metagenome incomplete Public Univ of Ioannina, DOE Joint Genome Institute DOE Kyrpides N nckyrpides@lbl.gov 006223_GCAT 0 In progress 0 0 0 454-Titanium, Sanger, Solexa USA Aitoliko Lagoon, Greece Greece Aitoliko Lagoon, Greece 38.4677 21.333 None Mat unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Soil eukaryotic microbial community from blue grama grass rhizosphere from blue grama grass rhizosphere ALE blue grama RHZ soils Gm00209 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov Bioenergy, Energy production, Biotechnological 006224_GCAT 0 Awaiting DNA 0 0 0 USA Soil None Soil unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Mat microbial communities from Elkhorn Slough from Elkhorn Slough hypersaline mats Hypersaline microbial mat - Raymond Gm00210 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov 006225_GCAT 0 In progress 0 0 0 USA Elkhorn Slough hypersaline mats USA Elkhorn Slough 36.82188 -121.744237 None Mat unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Permafrost microbial communities Permafrost Soil Microbiota Gm00211 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov 006226_GCAT 0 Awaiting DNA 0 0 0 USA None Mat unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Fresh water microbial communities from LaBonte Lake from LaBonte Lake LaBonte Lake Water Gm00212 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov 006227_GCAT 0 Awaiting DNA 0 0 0 USA LaBonte Lake USA LaBonte Lake 39.576431 -106.050383 None Lake, Fresh water unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Gut microbiome of Locust of Locust Locust gut metagenome Gm00213 Metagenome incomplete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov 006228_GCAT 0 Awaiting DNA 0 0 0 USA Locust gut Locust Gastrointestinal tract Gut None Gut, Host Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Comamonas BACTERIAL Comamonas testosteroni CNB-2 CNB-2 Comamonas testosteroni Gc01101 Genome Complete and Published Public The Institute of Microbiology Liu SJ 2009-09-04 Appl Environ Microbiology Epub Biotechnological 285 006229_GCAT 87769 0 Complete Level 6: Finished 5373 4803 1 0 61.4 Sanger China Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living None Sludge Motile Surfactant-degrading Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga granulosa BACTERIAL Capnocytophaga granulosa ATCC 51502 ATCC 51502 Capnocytophaga granulosa ATCC 51502 ATCC 51502 Yes Gi05254 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 641143 SRS003103 006230_GCAT 9331 0 In progress 0 0 0 454, Sanger USA Supragingival dental plaque of 25-year-old male Japan Homo sapiens Male 25 years old Oral Dental plaque Subgingival Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Human oral microflora, Host 35 - 37 Motile Opportunistic Pathogen Chemoorganotroph Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. BACTERIAL Prevotella sp. F0323 F0323 Prevotella sp. BEI Contacted Unknown Gi05255 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 59823 006231_GCAT 9332 HOMD:tax_302 0 In progress 0 0 0 USA Human oral cavity Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human vaginal microflora Nonmotile Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Johnsonella BACTERIAL Johnsonella ignava ATCC 51276 ATCC 51276 ATCC 51276 Yes Gi05256 Genome incomplete Public Broad Institute NIH Medical, Human Microbiome Project (HMP) 43995 006232_GCAT 9333 0 DNA Received 0 0 0 USA Human oral cavity - (gingival crevice of healthy human) Homo sapiens Healthy Oral Gingival crevices Facultative Rod-shaped Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae Selenomonas BACTERIAL Selenomonas infelix ATCC 43532 ATCC 43532 ATCC 43532 Yes Gi05257 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 135082 006233_GCAT 9334 0 DNA Received 0 0 0 Sanger, 454-FLX USA human subgingival region Homo sapiens Oral Subgingival Anaerobe Crescent-shaped Mesophile gram+ Free living Host, Human oral microflora Motile unclassified unclassified unclassified unclassified unclassified unclassified unclassified MICROBIAL Sediment and Water microbial communities from Great Boiling Spring from Great Boiling Spring Gm00214 Metagenome complete Public DOE Joint Genome Institute DOE Tringe SG sgtringe@lbl.gov 006234_GCAT 0 0 0 0 USA Great Boiling Spring, Nevada Sediment and water USA Great Boiling Spring, Nevada 40.71458 -119.369659 Hyperthermophile 6.37 Hot spring Bacteria Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Aggregatibacter BACTERIAL Aggregatibacter aphrophilus F0387 F0387 Unknown Gi05258 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Medical, Human Microbiome Project (HMP) 732 006235_GCAT 9335 HOMD: tax 545 0 Awaiting DNA 0 0 0 USA Human oral cavity Homo sapiens Oral Facultative Rod-shaped Mesophile gram- Symbiotic Parasitic Chains, Pairs, Singles Oral microflora, Host 37 Nonmotile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Segniliparaceae Segniliparus BACTERIAL Segniliparus rugosus ATCC BAA-974 ATCC BAA-974 ATCC BAA-974 Yes Gi05259 Genome incomplete Public Broad Institute NIH Broad hmpstrainsbroad@broad.mit.edu Human Microbiome Project (HMP), Medical 286804 006236_GCAT 9336 0 Awaiting DNA 0 0 68 454, Sanger USA Human sputum, Alabama USA Human sputum, Alabama Homo sapiens Airways Sputum Rod-shaped Mesophile gram+ Free living None 28 Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio harveyi BACTERIAL Vibrio harveyi 1DA3 1DA3 Vibrio harveyi 1DA3 Gi05260 Genome incomplete Public LNCC Environmental 673519 40361 006237_GCAT 0 In progress 0 0 0 Brazil Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Marine 20 - 30 Motile Bioluminescent Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio BACTERIAL Vibrio alginolyticus 40B 40B Gi05261 Genome incomplete Public LNCC Environmental 153622 40359 006238_GCAT 0 In progress 0 0 0 Brazil Mussismilia hispida 11760944 Mussismilia hispida Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Marine 20 - 30 Motile Bioluminescent Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio mimicus BACTERIAL Vibrio alginolyticus VM573 VM573 Vibrio mimicus VM573 Gi05262 Genome incomplete Public LNCC Environmental 671076 40243 006239_GCAT 0 NZ_ACYV00000000 Draft 18x 74 4366 3831 46 Brazil Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Marine 20 - 30 Motile Bioluminescent Heterotroph Bacteria Firmicutes Clostridia Thermoanaerobacterales Thermoanaerobacterales Family III. Incertae Sedis Caldicellulosiruptor BACTERIAL Caldicellulosiruptor sp. OB47 OB47 Caldicellulosiruptor sp. OB47 Unknown Gi05263 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Energy production, Bioenergy 608506 40355 006240_GCAT 0 Awaiting DNA 0 0 0 USA Obsidian Pool, Yellowstone National Park USA Obsidian Pool, Yellowstone National Park 44.630844 -110.440292 Anaerobe Rod-shaped Nonsporulating Hyperthermophile 7.0 gram- Free living Singles, Pairs None Hot spring 79 Biomass degrader, Cellulose degrader, Nitrogen producer Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis A16R A16R Bacillus anthracis str. A16R Gi05264 Genome incomplete Public Beijing Genomics Institute Biothreat, Medical, Human Pathogen 673518 40353 006241_GCAT 0 In progress 0 0 0 China Aerobe Rod-shaped Sporulating Mesophile gram+ Free living Anthrax Soil Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae BACTERIAL Pseudomonas syringae 642 642 Pseudomonas syringae 642 Gi05265 Genome incomplete Public Virginia Tech Plant Pathogen, Agricultural 673266 40347 006242_GCAT 0 In progress 0 0 0 USA unidentified weed in early spring 2007 on the Virginia Tech campus, Blacksburg, VA, USA spring 2007 USA Virginia Tech campus, Blacksburg, VA 37.170891 -80.417547 Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plant rot Plants Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 BACTERIAL Pseudomonas syringae pv. tomato NCPPB 1108 NCPPB 1108 Pseudomonas syringae pv. tomato NCPPB 1108 Gi05266 Genome incomplete Public Virginia Tech Plant Pathogen, Agricultural 673265 40345 006243_GCAT 0 In progress 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plant rot Plants Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 BACTERIAL Pseudomonas syringae pv. tomato Max13 Max13 Pseudomonas syringae pv. tomato Max13 Gi05267 Genome incomplete Public Virginia Tech Agricultural, Plant Pathogen 673198 40343 006244_GCAT 0 In progress 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plant rot Plants Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 BACTERIAL Pseudomonas syringae pv. tomato K40 K40 Pseudomonas syringae pv. tomato K40 Gi05268 Genome incomplete Public Virginia Tech Plant Pathogen, Agricultural 673198 40341 006245_GCAT 0 In progress 0 0 0 USA tomato seedling in Virginia in spring 2005 spring 2005 USA Virginia, USA Aerobe Rod-shaped Nonsporulating Mesophile gram- Free living Singles Plant rot Plants Motile Pathogen Heterotroph Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus A017934/97 A017934/97 Staphylococcus aureus subsp. aureus A017934/97 Gi05269 Genome incomplete Public Broad Institute Medical, Human Pathogen 585147 40307 006246_GCAT 0 In progress 0 0 0 USA Homo sapiens Airways Nasal Facultative Coccus-shaped Nonsporulating Mesophile gram+ Free living Clusters, Singles Human airways, Host 30 - 37 Nonmotile Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPKX_1172_AG4C1 HPKX_1172_AG4C1 Helicobacter pylori HPKX_1172_AG4C1 Gi05272 Genome incomplete Public Washington Univ Medical, Human Pathogen 673335 40525 006249_GCAT 0 In progress 0 0 0 USA Homo sapiens Gastrointestinal tract Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Human stomach, Host 37 Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPKX_1172_AG0C2 HPKX_1172_AG0C2 Helicobacter pylori HPKX_1172_AG0C2 Gi05273 Genome incomplete Public Washington Univ Medical, Human Pathogen 673334 40523 006250_GCAT 0 In progress 0 0 0 USA Homo sapiens Gastrointestinal tract Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Ulcer, Gastric inflammation Human stomach, Host 37 Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPKX_1172_AG0C1 HPKX_1172_AG0C1 Helicobacter pylori HPKX_1172_AG0C1 Gi05274 Genome incomplete Public Washington Univ Medical, Human Pathogen 673333 40521 006251_GCAT 0 In progress 0 0 0 USA Homo sapiens Gastrointestinal tract Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Host, Human stomach 37 Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPKX_1039_AG4C2 HPKX_1039_AG4C2 Helicobacter pylori HPKX_1039_AG4C2 Gi05275 Genome incomplete Public Washington Univ Medical, Human Pathogen 673332 40519 006252_GCAT 0 In progress 0 0 0 USA Homo sapiens Gastrointestinal tract Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Human stomach, Host 37 Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPKX_1039_AG4C1 HPKX_1039_AG4C1 Helicobacter pylori HPKX_1039_AG4C1 Gi05276 Genome incomplete Public Washington Univ Medical, Human Pathogen 673331 40515 006253_GCAT 0 In progress 0 0 0 USA Homo sapiens Gastrointestinal tract Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Human stomach, Host 37 Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPKX_1039_AG0C2 HPKX_1039_AG0C2 Helicobacter pylori HPKX_1039_AG0C2 Gi05278 Genome incomplete Public Washington Univ Medical, Human Pathogen 673330 40513 006254_GCAT 0 In progress 0 0 0 USA Homo sapiens Gastrointestinal tract Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Ulcer, Gastric inflammation Host, Human stomach 37 Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPKX_1039_AG0C1 HPKX_1039_AG0C1 Helicobacter pylori HPKX_1039_AG0C1 Gi05279 Genome incomplete Public Washington Univ Medical, Human Pathogen 673329 40511 006255_GCAT 0 In progress 0 0 0 USA Homo sapiens Gastrointestinal tract Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Human stomach, Host 37 Motile Pathogen Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Propionibacterium BACTERIAL Propionibacterium acnes B9.4 B9.4 Propionibacterium acnes Unknown Gi05280 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 1747 006256_GCAT 9337 0 Awaiting DNA 0 0 0 USA Human skin Huiying Li Human skin Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Acne Human skin, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Propionibacterium BACTERIAL Propionibacterium acnes B9.2 B9.2 Propionibacterium acnes No Gi05281 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Human Microbiome Project (HMP), Medical 1747 006257_GCAT 9338 0 Awaiting DNA 0 0 0 USA Human skin Huiying Li Human skin Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Acne Human skin, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Propionibacterium BACTERIAL Propionibacterium acnes B69.8 B69.8 Propionibacterium acnes No Gi05282 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 1747 006258_GCAT 9339 0 Awaiting DNA 0 0 0 USA Human skin Huiying Li Human skin Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Acne Human skin, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Propionibacterium BACTERIAL Propionibacterium acnes B69.7 B69.7 Propionibacterium acnes No Gi05283 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 1747 006259_GCAT 9340 0 Awaiting DNA 0 0 0 USA Human skin Huiying Li Human skin Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Acne Human skin, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Propionibacterium BACTERIAL Propionibacterium acnes B66.8 B66.8 Propionibacterium acnes No Gi05284 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 1747 006260_GCAT 9341 0 Awaiting DNA 0 0 0 USA Human skin Huiying Li Human skin Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Acne Host, Human skin Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Propionibacterium BACTERIAL Propionibacterium acnes B59.9 B59.9 Propionibacterium acnes No Gi05285 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Human Microbiome Project (HMP), Medical 1747 006261_GCAT 9342 0 Awaiting DNA 0 0 0 USA Human skin Huiying Li Human skin Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Acne Human skin, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Propionibacterium BACTERIAL Propionibacterium acnes B58.8 B58.8 Propionibacterium acnes No Gi05286 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 1747 006262_GCAT 9343 0 Awaiting DNA 0 0 0 USA Human skin Huiying Li Human skin Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Acne Human skin, Host Nonmotile Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Propionibacteriaceae Propionibacterium BACTERIAL Propionibacterium acnes B57.1 B57.1 Propionibacterium acnes No Gi05287 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Human Microbiome Project (HMP), Medical 1747 006263_GCAT 9344 0 Awaiting DNA 0 0 0 USA Human skin Huiying Li Human skin Homo sapiens Skin Anaerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Acne Human skin, Host Nonmotile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia BACTERIAL Escherichia coli MS 107-1 MS 107-1 Unknown Gi05288 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Human Microbiome Project (HMP), Medical 562 006264_GCAT 9345 270795 0 Awaiting DNA 0 0 0 USA Human gastrointestinal tract Ellen Li Homo sapiens Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs None Gastrointestinal tract, Host 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia BACTERIAL Escherichia coli MS 119-7 MS 119-7 Unknown Gi05289 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Medical, Human Microbiome Project (HMP) 562 006265_GCAT 9346 270795 0 Awaiting DNA 0 0 0 USA Human gastrointestinal tract Ellen Li Homo sapiens Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles, Pairs None Host, Gastrointestinal tract 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia BACTERIAL Escherichia coli MS 124-1 MS 124-1 Unknown Gi05290 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Human Microbiome Project (HMP), Medical 562 006266_GCAT 9347 0 Awaiting DNA 0 0 0 USA Human gastrointestinal tract Ellen Li Homo sapiens Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Gastrointestinal tract, Host 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia BACTERIAL Escherichia coli MS 145-7 MS 145-7 Unknown Gi05291 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Human Microbiome Project (HMP), Medical 562 006267_GCAT 9348 0 Awaiting DNA 0 0 0 USA Human gastrointestinal tract Ellen Li Homo sapiens Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Gastrointestinal tract 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia BACTERIAL Escherichia coli MS 79-2 MS 79-2 Unknown Gi05292 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Human Microbiome Project (HMP), Medical 562 006268_GCAT 9349 0 Awaiting DNA 0 0 0 USA Human gastrointestinal tract Ellen Li Homo sapiens Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Gastrointestinal tract 37 Motile Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia BACTERIAL Escherichia coli MS 85-1 MS 85-1 Unknown Gi05293 Genome incomplete Public Washington Univ NIH WashU hmpstrainswashu@watson.wustl.edu Human Microbiome Project (HMP), Medical 562 006269_GCAT 9350 0 Awaiting DNA 0 0 0 USA Human gastrointestinal tract Ellen Li Homo sapiens Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Host, Gastrointestinal tract 37 Motile Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPKX_1172_AG4C2 HPKX_1172_AG4C2 Helicobacter pylori HPKX_1172_AG4C2 Gi05294 Genome incomplete Public Washington Univ Human Pathogen, Medical 673336 40527 006270_GCAT 0 In progress 0 0 0 USA Homo sapiens Gastrointestinal tract Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Host, Human stomach 37 Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPKX_1259_NL0C1 HPKX_1259_NL0C1 Helicobacter pylori HPKX_1259_NL0C1 Gi05295 Genome incomplete Public Washington Univ Human Pathogen, Medical 673337 40529 006271_GCAT 0 In progress 0 0 0 USA Homo sapiens Gastrointestinal tract Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Human stomach, Host 37 Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPKX_1259_NL0C2 HPKX_1259_NL0C2 Helicobacter pylori HPKX_1259_NL0C2 Gi05296 Genome incomplete Public Washington Univ Medical, Human Pathogen 673338 40531 006272_GCAT 0 In progress 0 0 0 USA Homo sapiens Gastrointestinal tract Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Host, Human stomach 37 Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPKX_1259_NL4C1 HPKX_1259_NL4C1 Helicobacter pylori HPKX_1259_NL4C1 Gi05297 Genome incomplete Public Washington Univ Medical, Human Pathogen 673339 40533 006273_GCAT 0 In progress 0 0 0 USA Homo sapiens Gastrointestinal tract Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Human stomach, Host 37 Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPKX_1259_NL4C2 HPKX_1259_NL4C2 Helicobacter pylori HPKX_1259_NL4C2 Gi05298 Genome incomplete Public Washington Univ Medical, Human Pathogen 673340 40535 006274_GCAT 0 In progress 0 0 0 USA Homo sapiens Gastrointestinal tract Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Human stomach, Host 37 Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPKX_1379_NL0C1 HPKX_1379_NL0C1 Helicobacter pylori HPKX_1379_NL0C1 Gi05299 Genome incomplete Public Washington Univ Human Pathogen, Medical 673341 40537 006275_GCAT 0 In progress 0 0 0 USA Homo sapiens Gastrointestinal tract Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Ulcer, Gastric inflammation Human stomach, Host 37 Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPKX_1379_NL0C2 HPKX_1379_NL0C2 Helicobacter pylori HPKX_1379_NL0C2 Gi05300 Genome incomplete Public Washington Univ Medical, Human Pathogen 673342 40539 006276_GCAT 0 In progress 0 0 0 USA Homo sapiens Gastrointestinal tract Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Ulcer, Gastric inflammation Host, Human stomach 37 Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPKX_1379_NL4C1 HPKX_1379_NL4C1 Helicobacter pylori HPKX_1379_NL4C1 Gi05301 Genome incomplete Public Washington Univ Human Pathogen, Medical 673343 40541 006277_GCAT 0 In progress 0 0 0 USA Homo sapiens Gastrointestinal tract Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Human stomach, Host 37 Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPKX_1379_NL4C2 HPKX_1379_NL4C2 Helicobacter pylori HPKX_1379_NL4C2 Gi05302 Genome incomplete Public Washington Univ Medical, Human Pathogen 673344 40543 006278_GCAT 0 In progress 0 0 0 USA Homo sapiens Gastrointestinal tract Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Host, Human stomach 37 Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPKX_345_AG4C1 HPKX_345_AG4C1 Helicobacter pylori HPKX_345_AG4C1 Gi05303 Genome incomplete Public Washington Univ Medical, Human Pathogen 673345 40545 006279_GCAT 0 In progress 0 0 0 USA Homo sapiens Gastrointestinal tract Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Ulcer, Gastric inflammation Human stomach, Host 37 Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPKX_345_AG4C2 HPKX_345_AG4C2 Helicobacter pylori HPKX_345_AG4C2 Gi05304 Genome incomplete Public Washington Univ Medical, Human Pathogen 673346 40547 006280_GCAT 0 In progress 0 0 0 USA Homo sapiens Gastrointestinal tract Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Human stomach, Host 37 Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPKX_345_NL0C1 HPKX_345_NL0C1 Helicobacter pylori HPKX_345_NL0C1 Gi05305 Genome incomplete Public Washington Univ Medical, Human Pathogen 673347 40549 006281_GCAT 0 In progress 0 0 0 USA Homo sapiens Gastrointestinal tract Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Human stomach, Host 37 Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPKX_345_NL0C2 HPKX_345_NL0C2 Helicobacter pylori HPKX_345_NL0C2 Gi05306 Genome incomplete Public Washington Univ Medical, Human Pathogen 673348 40551 006282_GCAT 0 In progress 0 0 0 USA Homo sapiens Gastrointestinal tract Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Ulcer, Gastric inflammation Human stomach, Host 37 Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPKX_438_AG0C2 HPKX_438_AG0C2 Helicobacter pylori HPKX_438_AG0C2 Gi05307 Genome incomplete Public Washington Univ Human Pathogen, Medical 673349 40553 006283_GCAT 0 In progress 0 0 0 USA Homo sapiens Gastrointestinal tract Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Human stomach, Host 37 Motile Pathogen Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPKX_438_CA4C2 HPKX_438_CA4C2 Helicobacter pylori HPKX_438_CA4C2 Gi05308 Genome incomplete Public Washington Univ Medical, Human Pathogen 673350 40555 006284_GCAT 0 In progress 0 0 0 USA Homo sapiens Gastrointestinal tract Aerobe Spiral-shaped Nonsporulating Mesophile gram- Free living Singles Gastric inflammation, Ulcer Human stomach, Host 37 Motile Pathogen Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio mimicus BACTERIAL Vibrio alginolyticus VM223 VM223 Vibrio mimicus VM223 Gi05309 Genome incomplete Public LANL 675820 40483 006285_GCAT 0 In progress 0 0 46 USA bivalve from S?o Paulo, Brazil Brazil S?o Paulo, Brazil -23.523322 -46.638565 Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Marine 20 - 30 Motile Bioluminescent Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio mimicus BACTERIAL Vibrio alginolyticus MB-451 MB-451 Vibrio mimicus MB-451 Gi05310 Genome incomplete Public LANL 675806 40509 006286_GCAT 0 In progress 0 0 46 USA diarrheal patient from Matlab, Bangladesh Bangladesh Matlab, Bangladesh 23.34593 90.71093 Homo sapiens Patient with diarrhea Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Marine 20 - 30 Motile Bioluminescent Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium damselae BACTERIAL Photobacterium damselae damselae CIP 102761 CIP 102761 Photobacterium damselae subsp. damselae CIP 102761 ATCC 33539 Yes Gi05311 Genome incomplete Public LANL Environmental 675817 40485 006287_GCAT 0 In progress 0 0 0 Sanger USA Damselfish skin ulcers, Chromis punctipinnis, California USA Chromis punctipinnis Mesophile gram- Free living None Marine Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio orientalis BACTERIAL Vibrio orientalis CIP 102891 CIP 102891 Vibrio orientalis CIP 102891 ATCC 33934 Yes Gi05312 Genome incomplete Public LANL 675816 40487 006288_GCAT 0 In progress 0 0 0 USA seawater, Yellow Sea, China China Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Marine 20 - 30 Motile Bioluminescent Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. RC586 BACTERIAL Vibrio sp. RC586 RC586 Vibrio sp. RC586 Gi05313 Genome incomplete Public LANL 675815 40489 006289_GCAT 0 In progress 0 0 0 USA Chesapeake Bay, MD in 1999 1999 USA Chesapeake Bay, MD 38.684009 -76.40213 Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Marine 20 - 30 Motile Bioluminescent Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio coralliilyticus BACTERIAL Vibrio coralliilyticus ATCC BAA-450 ATCC BAA-450 Vibrio coralliilyticus ATCC BAA-450 DSM 19607, ATCC BAA-450 Yes Gi05314 Genome incomplete Public LANL 675814 40491 006290_GCAT 0 In progress 0 0 0 USA diseased coral, Pocillopora damicornis) Zanzibar Tanzania March 16, 1999 Tanzania Zanzibar Tanzania -6.164948 39.202602 Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Marine 20 - 30 Motile Bioluminescent Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio metschnikovii BACTERIAL Vibrio metschnikovii CIP 69.14 CIP 69.14 Vibrio metschnikovii CIP 69.14 DSM 19132, ATCC 700040 Yes Gi05315 Genome incomplete Public LANL 675813 40493 006291_GCAT 0 In progress 0 0 0 USA Diseased fowl; United Kingdom United Kingdom Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Marine 20 - 30 Motile Bioluminescent Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio furnissii BACTERIAL Vibrio furnissii CIP 102972 CIP 102972 II Vibrio furnissii CIP 102972 DSM 19622, ATCC 35016 Yes Gi05316 Genome incomplete Public LANL 675811 40497 006292_GCAT 0 In progress 0 0 0 USA Japan Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Marine 20 - 30 Motile Bioluminescent Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. RC341 BACTERIAL Vibrio sp. RC341 RC341 Vibrio sp. RC341 Gi05317 Genome incomplete Public LANL 675810 40499 006293_GCAT 0 In progress 0 0 0 USA Chesapeake Bay, MD in 1998 1998 USA Chesapeake Bay, MD 38.699015 -76.415863 Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Marine 20 - 30 Motile Bioluminescent Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae CT 5369-93 CT 5369-93 Vibrio cholerae CT 5369-93 Gi05318 Genome incomplete Public LANL 675809 40501 006294_GCAT 0 In progress 0 0 0 USA sewage from Brazil in 1993 1993 Brazil Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Marine 20 - 30 Motile Bioluminescent Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae INDRE 91/1 (RC144) INDRE 91/1 (RC144) Vibrio cholerae INDRE 91/1 Gi05319 Genome incomplete Public LANL 675808 40503 006295_GCAT 0 In progress 0 0 0 USA Mexico in 1991 1991 Mexico Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Marine 20 - 30 Motile Bioluminescent Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. Ex25 BACTERIAL Vibrio sp. Ex25 Ex25 Vibrio sp. Ex25 Gi05320 Genome incomplete Public LANL 150340 40507 006296_GCAT 0 In progress 0 0 0 USA deep-sea hydrothermal vent community along the East Pacific Rise Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Marine 20 - 30 Motile Bioluminescent Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Grimontia hollisae BACTERIAL Grimontia hollisae CIP 101886 CIP 101886 Grimontia hollisae CIP 101886 ATCC 33564, DSM 15132 Yes Gi05321 Genome incomplete Public LANL 675812 40495 006297_GCAT 0 In progress 0 0 0 USA human feces, Maryland USA Arundel Gen. Hosp., Annapolis, Maryland 38.978181 -76.49404 Homo sapiens Gastrointestinal tract Feces Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Marine 20 - 30 Motile Bioluminescent Heterotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium tusciae JS617 JS617 Mycobacterium tusciae Gi05322 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 75922 006298_GCAT 0 Awaiting DNA 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles None Soil, Creosote-contaminated soil Nonmotile PAH-degrading Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium rhodesiae JS60 JS60 Mycobacterium rhodesiae Gi05323 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 36814 006299_GCAT 0 Awaiting DNA 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles None Creosote-contaminated soil, Soil Nonmotile PAH-degrading Chemoorganotroph Bacteria Actinobacteria Actinobacteria (class) Actinomycetales Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium chubuense NBB4 NBB4 Mycobacterium chubuense Gi05324 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 1800 006300_GCAT 0 Awaiting DNA 0 0 0 USA Aerobe Rod-shaped Nonsporulating Mesophile gram+ Free living Singles None Creosote-contaminated soil, Soil Nonmotile PAH-degrading Chemoorganotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio BACTERIAL Vibrio splendidus M2 M2 Vibrio splendidus Gi05327 Genome incomplete Public Eurofins Medigenomix GmbH NERC Hendrik Sch?fer H.Schaefer@warwick.ac.uk http://www2.warwick.ac.uk/fac/sci/whri/about/staff/hschaefer Fish Pathogen 29497 006303_GCAT 0 Complete 0 0 0 United Kingdom Western Channel Observatory, Station L4, Devon, UK Seawater Paracoccus versutus medium, 2% NaCl, amended with 2 mM dimethylsulfide United Kingdom Western Channel Observatory, Station L4, Devon, UK 50.25 -4.216667 Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles Vibriosis Surface water, Marine Motile Pathogen Heterotroph Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio BACTERIAL Vibrio cholerae G4222 G4222 O1 Vibrio cholerae Gi05328 Genome incomplete Public CSIR Wouter le Roux wleroux@csir.co.za 666 006304_GCAT 0 Draft 0 0 2 0 454 South Africa Gauteng Clinical 1-Jan2001 South Africa -26.270 28.112 Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Singles None Marine 20 - 30 Motile Bioluminescent Heterotroph Bacteria Proteobacteria Zetaproteobacteria Mariprofundales Mariprofundaceae Mariprofundus BACTERIAL Mariprofundus ferrooxydans M34 M34 Mariprofundus ferrooxydans Gi05329 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Environmental 314344 006305_GCAT 0 Awaiting DNA 0 0 0 USA Aerobe Mesophile gram- Free living None Marine Iron oxidizer Chemolithoautotroph Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Acetobacter Acetobacter pasteurianus BACTERIAL Acetobacter pasteurianus IFO 3283-03 IFO 3283-03 Acetobacter pasteurianus IFO 3283-03 Gi05331 Genome incomplete Public Yamaguchi Univ, NITE Azuma Y yazuma@yamaguchi-u.ac.jp Agricultural 634453 31131 006308_GCAT 0 In progress 0 0 0 Japan Aerobe gram- Symbiotic Plants None Acid-producing, Nitrogen fixation Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Acetobacter Acetobacter pasteurianus BACTERIAL Acetobacter pasteurianus IFO 3283-07 IFO 3283-07 Acetobacter pasteurianus IFO 3283-07 Gi05332 Genome incomplete Public Yamaguchi Univ, NITE Azuma Y yazuma@yamaguchi-u.ac.jp Agricultural 634454 31133 006309_GCAT 0 In progress 0 0 0 Japan Aerobe gram- Symbiotic Plants None Nitrogen fixation, Acid-producing Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Acetobacter Acetobacter pasteurianus BACTERIAL Acetobacter pasteurianus IFO 3283-12 IFO 3283-12 Acetobacter pasteurianus IFO 3283-12 NBRC 3283-12 Gi05333 Genome incomplete Public Yamaguchi Univ, NITE Azuma Y yazuma@yamaguchi-u.ac.jp Agricultural 634459 32203 006310_GCAT 0 In progress 0 0 0 Japan Aerobe gram- Symbiotic Plants None Nitrogen fixation, Acid-producing Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Acetobacter Acetobacter pasteurianus BACTERIAL Acetobacter pasteurianus IFO 3283-22 IFO 3283-22 Acetobacter pasteurianus IFO 3283-22 Gi05334 Genome incomplete Public Yamaguchi Univ, NITE Azuma Y yazuma@yamaguchi-u.ac.jp Agricultural 634455 31135 006311_GCAT 0 In progress 0 0 0 Japan Aerobe gram- Symbiotic Plants None Nitrogen fixation, Acid-producing Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Acetobacter Acetobacter pasteurianus BACTERIAL Acetobacter pasteurianus IFO 3283-32 IFO 3283-32 Acetobacter pasteurianus IFO 3283-32 Gi05336 Genome incomplete Public Yamaguchi Univ, NITE Azuma Y yazuma@yamaguchi-u.ac.jp Agricultural 634457 31139 006313_GCAT 0 In progress 0 0 0 Japan Aerobe gram- Symbiotic Plants None Acid-producing, Nitrogen fixation Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O26:H11 11368 11368 Escherichia coli O26:H11 str. 11368 Gi05337 Genome incomplete Public Univ of Tokyo Medical 573235 32509 006314_GCAT 0 In progress 0 0 0 Japan human enterohemorrhagic E. coli which attaches to and effaces cells in the large intestine. Homo sapiens Gastrointestinal tract Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Human skin, Host 37 Motile Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia endosymbiont of Ixodes scapularis BACTERIAL Rickettsia endosymbiont of Ixodes scapularis Rickettsia endosymbiont of Ixodes scapularis Gi05338 Genome incomplete Public J. Craig Venter Institute Medical 444612 33979 006315_GCAT 0 NZ_ACLC00000000 Draft 10.7x 135 1981 2283 31 Sanger USA endosymbiont of Ixodes scapularis, Wikel tick colony Ixodes scapularis Symbiotic Endosymbiotic intracellular Ixodes scapularis Vector of Pathogens Bacteria Proteobacteria Gammaproteobacteria Chromatiales Chromatiaceae Nitrosococcus Nitrosococcus watsoni BACTERIAL Nitrosococcus watsoni C-113 C-113 Nitrosococcus watsoni C-113 Gi05339 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological, Environmental 105559 40331 006316_GCAT 0 0 0 0 USA Aerobe Mesophile gram- Free living None Marine Motile Carbon sequestration, Nitrifying, Ammonia-oxidizer Autotroph, Chemolithotroph Eukaryota Streptophyta Brassicales Brassicaceae Boechera EUKARYAL Boechera stricta LTM LTM Gi05341 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Agricultural 72658 006318_GCAT 0 In progress 0 0 0 USA None Ectomycorrhizal Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Piscirickettsiaceae Thioalkalimicrobium BACTERIAL Thioalkalimicrobium aerophilum AL2 AL2 Gi05342 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Bioremediation, Biotechnological 92245 006319_GCAT 0 Awaiting DNA 0 0 0 USA Bacteria Proteobacteria Zetaproteobacteria Mariprofundales Mariprofundaceae BACTERIAL Mariprofundus sp. GSB2 GSB2 Gi05343 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Environmental 377315 006320_GCAT 0 Awaiting DNA 0 0 0 USA Aerobe Mesophile gram- Free living None Marine Iron oxidizer Chemolithoautotroph Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella BACTERIAL Shewanella baltica OS117 OS117 Shewanella baltica Gi05344 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 62322 006321_GCAT 0 Awaiting DNA 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Marine 4 Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella BACTERIAL Shewanella baltica OS678 OS678 Shewanella baltica Gi05345 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 62322 006322_GCAT 0 Awaiting DNA 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Marine 4 Motile Heterotroph Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella BACTERIAL Shewanella baltica OS183 OS183 Shewanella baltica Gi05346 Genome incomplete Public DOE Joint Genome Institute DOE Bruce D microbes@cuba.jgi-psf.org Biotechnological 62322 006323_GCAT 0 Awaiting DNA 0 0 0 USA Facultative Rod-shaped Nonsporulating Mesophile gram- Free living Pairs, Singles None Marine 4 Motile Heterotroph Bacteria Acidobacteria Holophagae Holophagales Holophagaceae Holophaga BACTERIAL Holophaga foetida TMBS4 TMBS4 DSM 6591 Yes Gi05348 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org GEBA, Tree of Life 35839 006325_GCAT 0 Awaiting DNA 0 0 0 Illumina, 454-Titanium USA black anoxic freshwater mud; Germany Germany 8085918 Obligate anaerobe Rod-shaped Mesophile gram- Free living Mud Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Joostella BACTERIAL Joostella marina En5 En5 DSM 19592 Yes Gi05349 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org GEBA, Tree of Life 453852 006326_GCAT 0 Awaiting DNA 0 0 30 Illumina, 454-Titanium USA Coastal seawater in the East Sea of Korea, at a depth of 100 m Korea 18523183 100 m Obligate aerobe Rod-shaped Nonsporulating Mesophile 5.3 - 7.6 Yellow gram- Free living Mud 30 Nonmotile Bacteria Deinococcus-Thermus Deinococci Thermales Thermaceae Marinithermus BACTERIAL Marinithermus hydrothermalis T1 T1 DSM 14884 Yes Gi05350 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 186192 006327_GCAT 0 Awaiting DNA 0 0 68.6 Illumina, 454-Titanium USA deep-sea hydrothermal vent chimney sample collected from the Suiyo Seamount in the Izu-Bonin Arc, Japan, at a depth of 1,385 m Japan 12656153 Suiyo Seamount in the Izu-Bonin Arc, Japan 29.47021 140.837401 1,385 m Obligate aerobe Rod-shaped Thermophile 7 gram- Free living Pairs Marine 67.5 Heterotroph Bacteria Deinococcus-Thermus Deinococci Thermales Thermaceae Meiothermus BACTERIAL Meiothermus chliarophilus ALT-8 ALT-8 DSM 9957 Yes Gi05351 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 52023 006328_GCAT 0 Awaiting DNA 0 0 68.6 Illumina, 454-Titanium USA Hot spring, Alcafache Portugal Portugal 7547281 Alcafache Portugal 40.594649 -7.872571 Thermophile Yellow Free living Hot spring 50 Archaea Euryarchaeota Methanomicrobia Methanomicrobiales Methanocalculus ARCHAEAL Methanocalculus halotolerans SEBR 4845 SEBR 4845 DSM 14092 Yes Gi05352 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org GEBA, Tree of Life 71152 006329_GCAT 0 Targeted 0 0 0 Illumina, 454-Titanium USA Oil field; Alsace, France France Alsace, France 48.318 7.441 Halotolerant Free living Oil fields Methanotroph Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosaetaceae Methanosaeta ARCHAEAL Methanosaeta harundinacea 8Ac 8Ac DSM 17206 Yes Gi05353 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org GEBA, Tree of Life 301375 006330_GCAT 0 Targeted 0 0 55.7 Illumina, 454-Titanium USA upflow anaerobic sludge blanket reactor treating beer-manufacture wastewater in Beijing, China China 16403877 Beijing, China Rod-shaped Mesophile 7.2 - 7.6 0.8 - 1.0 um 3 - 5 um Free living Pairs, Singles Wastewater Nonmotile Methanogen Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Muricauda BACTERIAL Muricauda ruestringensis B1 B1 DSM 13258 Yes Gi05354 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 111501 006331_GCAT 0 Awaiting DNA 0 0 0 454-Titanium, Illumina USA Seawater sediment suspension containing hexadecane; Germany, North Sea coastGerm Germany 11760940 North Sea coastGerm, Germany Facultative gram- Free living Xylan degrader Heterotroph Bacteria Firmicutes Clostridia Halanaerobiales Halobacteroidaceae Natroniella BACTERIAL Natroniella acetigena Z-7937 Z-7937 DSM 9952 Yes Gi05355 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org GEBA, Tree of Life 52004 006332_GCAT 0 Awaiting DNA 0 0 31.9 454-Titanium, Illumina USA Bottom mud from Lake Magadi Kenya 8661677 Lake Magadi in Kenya -1.916345 36.251907 Obligate anaerobe Sporulating Mesophile Halophile 9.7 - 10 gram- Free living Mud Motile Alkaliphile Chemoorganotroph Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella dentalis ES 2772, DSM 3688 ES 2772, DSM 3688 ATCC 49559, DSM 3688, CCUG 48288 Yes Gi05356 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 52227 006333_GCAT 0 Awaiting DNA 0 0 0 USA Human dental root canal Homo sapiens Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Host, Human oral microflora Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella multiformis PPPA21, DSM 16608 PPPA21, DSM 16608 DSM 16608, CCUG 51937 Yes Gi05357 Genome incomplete Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org GEBA, Tree of Life 282402 006334_GCAT 0 Awaiting DNA 0 0 0 USA Subgingival plaque of a patient with chronic periodontitis; Japan 31 Oct 2005 Japan Saitama,Japan 35.861729 139.645482 Homo sapiens Patient with chronic periodontitis Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Human oral microflora, Host Nonmotile Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella BACTERIAL Prevotella multisaccharivorax PPPA20, DSM 17128 PPPA20, DSM 17128 CCUG 54633, DSM 17128, JCM 12954 Yes Gi05358 Genome incomplete Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 310514 006335_GCAT 0 In progress 0 0 0 USA Subgingival plaque, chronic periodontitis; Japan Japan Homo sapiens Patient with chronic periodontitis Oral Anaerobe Rod-shaped Nonsporulating Mesophile gram- Free living Human oral microflora, Host Nonmotile Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema BACTERIAL Treponema saccharophilum PB PB DSM 2985, ATCC 43261 Yes Gi05359 Genome targeted Public DOE Joint Genome Institute, DSMZ DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org GEBA, Tree of Life 165 006336_GCAT 0 Awaiting DNA 0 0 54 USA Bovine rumen 4051480 Bovine Gastrointestinal tract Rumen Obligate anaerobe Helical-shaped Mesophile 0.6 - 0.7 um 12 - 20 um Free living None Host Motile Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema BACTERIAL Treponema parvum OMZ843 OMZ843 ATCC 700770, DSM 16260 Yes Gi05360 Genome targeted Public DSMZ, DOE Joint Genome Institute DOE, DSMZ Bruce D microbes@cuba.jgi-psf.org Tree of Life, GEBA 138851 006337_GCAT 0 Awaiting DNA 0 0 0 USA Patient with periodontitis; Switzerland Switzerland 11411720 Homo sapiens Patient with periodontitis Oral Gingival crevices Obligate anaerobe Helical-shaped Mesophile 0.6 - 0.7 um 12 - 20 um Free living None Host Motile