Reconstructing the history of effective population size (Ne) along phylogenies

Mathieu Brevet and Nicolas Lartillot

This page links to the models and data used in Brevet and Lartillot (2021), for reconstructing variation in effective population size along a phylogeny, using data about synonymous and non-synonymous polymorphism (piS and piN) and divergence (dS and dN), and about generation times in extant species.

The manuscript is available here

The code is available here (branch coevolNe).

The method and sequence data that were used to get the synonymous and non-synonymous diversity estimates are available here

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