Re: [R] Pb with function taxo2phylog (package ade4)

From: Stéphane Dray (dray@biomserv.univ-lyon1.fr)
Date: Mon Oct 24 2005 - 14:04:00 MEST

  • Next message: Christophe Girod: "Problème avec l'utilisation de taxo2phylo"

    Christophe,
    please send emails related to this package to the ade4 list :

    http://pbil.univ-lyon1.fr/ADE-4/adelist.html

    Merci.

    Christophe Girod wrote:

    >Hello
    >
    > I'm using the package ade4 to obtain classification from a .txt file. I
    >use the following commands:
    >cronquist <- read.table("cronquist.txt", h = T, row.names = 8)
    >cronquist <- as.taxo(cronquist[7:1])
    >cro.phy <- taxo2phylog(cronquist)
    >
    >in which cronquist.txt is a file with a classification of 218 genus of tree
    >species from french Guiana.
    >We I try to use the function taxo2phylog, I obtain the following error
    >message (in French) :
    >Erreur dans newick2phylog.addtools(res) : la longueur de 'dimnames' [2]
    >n'est pas égale à l'étendue du tableau
    >Error in newick2phylog.addtools(res) : length of dimnames[2] is not equal to
    >length of frame
    >
    >newick2phylog.addtools is a function that is called when taxo2phylog is
    >called
    >
    >when I want to know what is in dimnames[2] I obtain the names of my columns
    >: none is missing.
    >
    >I don't understand what's happening because I've already been using this
    >function with other files and I had no problem
    >Can someone help me?
    >
    >Thanks
    >
    >Christophe Girod
    >
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    -- 
    Stéphane DRAY (dray@biomserv.univ-lyon1.fr )
    Laboratoire BBE-CNRS-UMR-5558, Univ. C. Bernard - Lyon I
    43, Bd du 11 Novembre 1918, 69622 Villeurbanne Cedex, France
    Tel: 33 4 72 43 27 57       Fax: 33 4 72 43 13 88
    http://www.steph280.freesurf.fr/ 
    



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