IoDiscreteDistribution.h

Go to the documentation of this file.

// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1

#ifndef BPP_IO_IODISCRETEDISTRIBUTION_H
#define BPP_IO_IODISCRETEDISTRIBUTION_H


#include "../Exceptions.h"
#include "../Numeric/Prob/DiscreteDistribution.h"
#include "IoFormat.h"
#include "OutputStream.h"

namespace bpp
{
class IoDiscreteDistribution :
  public virtual IOFormat
{
public:
  IoDiscreteDistribution() {}
  virtual ~IoDiscreteDistribution() {}

public:
  virtual const std::string getDataType() const { return "Discrete Distribution"; }
};

class IDiscreteDistribution :
  public virtual IoDiscreteDistribution
{
public:
  IDiscreteDistribution() {}
  virtual ~IDiscreteDistribution() {}

public:
  virtual std::unique_ptr<DiscreteDistributionInterface> readDiscreteDistribution(
      const std::string& distrDescription,
      bool parseArguments = true) = 0;

  virtual const std::map<std::string, std::string>& getUnparsedArguments() const = 0;
};

class ODiscreteDistribution :
  public virtual IoDiscreteDistribution
{
public:
  ODiscreteDistribution() {}
  virtual ~ODiscreteDistribution() {}

public:
  virtual void writeDiscreteDistribution(
      const DiscreteDistributionInterface& dist,
      OutputStream& out,
      std::map<std::string, std::string>& globalAliases,
      std::vector<std::string>& writtenNames) const = 0;
};
} // end of namespace bpp.
#endif // BPP_IO_IODISCRETEDISTRIBUTION_H