bpp-core3
3.0.0
StatTools.h
Go to the documentation of this file.
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//
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// File: StatTools.h
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// Authors:
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// Julien Dutheil
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// Created: 2011-01-30 19:10:00
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//
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/*
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Copyright or © or Copr. Bio++ Development Team, (November 17, 2004)
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This software is a computer program whose purpose is to provide classes
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for numerical calculus.
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This software is governed by the CeCILL license under French law and
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abiding by the rules of distribution of free software. You can use,
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modify and/ or redistribute the software under the terms of the CeCILL
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license as circulated by CEA, CNRS and INRIA at the following URL
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"http://www.cecill.info".
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As a counterpart to the access to the source code and rights to copy,
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modify and redistribute granted by the license, users are provided only
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with a limited warranty and the software's author, the holder of the
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economic rights, and the successive licensors have only limited
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liability.
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In this respect, the user's attention is drawn to the risks associated
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with loading, using, modifying and/or developing or reproducing the
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software by the user in light of its specific status of free software,
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that may mean that it is complicated to manipulate, and that also
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therefore means that it is reserved for developers and experienced
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professionals having in-depth computer knowledge. Users are therefore
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encouraged to load and test the software's suitability as regards their
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requirements in conditions enabling the security of their systems and/or
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data to be ensured and, more generally, to use and operate it in the
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same conditions as regards security.
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The fact that you are presently reading this means that you have had
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knowledge of the CeCILL license and that you accept its terms.
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*/
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#ifndef BPP_NUMERIC_STAT_STATTOOLS_H
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#define BPP_NUMERIC_STAT_STATTOOLS_H
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// From the STL:
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#include <vector>
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#include <cstddef>
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namespace
bpp
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{
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class
StatTools
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{
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private
:
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struct
PValue_
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{
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double
pvalue_
;
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size_t
index_
;
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PValue_
(
double
pvalue,
size_t
index) :
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pvalue_
(pvalue),
index_
(index) {}
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bool
operator<
(
const
PValue_
& pvalue)
const
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{
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return
pvalue.
pvalue_
<
pvalue_
;
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}
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};
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public
:
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static
std::vector<double>
computeFdr
(
const
std::vector<double>& pvalues);
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};
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}
// end of namespace bpp.
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#endif
// BPP_NUMERIC_STAT_STATTOOLS_H
bpp::StatTools
Statistics tools and utilitary functions.
Definition:
StatTools.h:56
bpp::StatTools::computeFdr
static std::vector< double > computeFdr(const std::vector< double > &pvalues)
Compute the false discovery rate for a set of input p-values, using Benjamini and Hochberg's 'FDR' me...
Definition:
StatTools.cpp:50
bpp
Definition:
ApplicationTools.h:59
bpp::StatTools::PValue_
Definition:
StatTools.h:59
bpp::StatTools::PValue_::PValue_
PValue_(double pvalue, size_t index)
Definition:
StatTools.h:62
bpp::StatTools::PValue_::index_
size_t index_
Definition:
StatTools.h:61
bpp::StatTools::PValue_::pvalue_
double pvalue_
Definition:
StatTools.h:60
bpp::StatTools::PValue_::operator<
bool operator<(const PValue_ &pvalue) const
Definition:
StatTools.h:65
Bpp
Numeric
Stat
StatTools.h
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