bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl > Class Template Reference

#include <Bpp/Graph/AssociationDAGraphImplObserver.h>

Inheritance diagram for bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >:

Collaboration diagram for bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >:

Public Types
typedef AssociationGraphObserver< N, E >::NodeIndex	NodeIndex
typedef AssociationGraphObserver< N, E >::EdgeIndex	EdgeIndex
typedef Graph::NodeId	NodeGraphid
typedef Graph::EdgeId	EdgeGraphid
typedef AssociationGraphObserver< N, E >::NodeIterator	NodeIterator
typedef AssociationGraphObserver< N, E >::EdgeIterator	EdgeIterator
using	Eref = std::shared_ptr< E >
using	Nref = std::shared_ptr< N >

Public Member Functions
	AssociationDAGraphImplObserver ()
	AssociationDAGraphImplObserver (std::shared_ptr< DAGraphImpl > subjectDAGraph)
	AssociationDAGraphImplObserver (bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl > const &dAGraphObserver)
template<class N2 , class E2 >
	AssociationDAGraphImplObserver (bpp::AssociationDAGraphImplObserver< N2, E2, DAGraphImpl > const &dAGraphObserver)
AssociationDAGraphImplObserver< N, E, DAGraphImpl > &	operator= (bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl > const &dAGraphObserver)
	~AssociationDAGraphImplObserver ()
AssociationDAGraphImplObserver< N, E, DAGraphImpl > *	clone () const
bool	isValid () const
bool	isRooted () const
std::vector< std::shared_ptr< N > >	getFathers (const std::shared_ptr< N > node) const
std::vector< NodeIndex >	getFathers (const NodeIndex node) const
void	rootAt (const std::shared_ptr< N > root)
	Sets the root and make the DAG directed from root to leaves. More...
bool	hasFather (const std::shared_ptr< N > nodeObject) const
bool	hasFather (const NodeIndex node) const
std::vector< std::shared_ptr< N > >	getSons (const std::shared_ptr< N > node) const
std::vector< NodeIndex >	getSons (const NodeIndex node) const
std::shared_ptr< N >	getSon (const std::shared_ptr< E > edge) const
NodeIndex	getSon (const EdgeIndex edgeId) const
std::shared_ptr< N >	getFatherOfEdge (const std::shared_ptr< E > edge) const
NodeIndex	getFatherOfEdge (const EdgeIndex edge) const
size_t	getNumberOfFathers (const std::shared_ptr< N > node) const
size_t	getNumberOfSons (const std::shared_ptr< N > node) const
std::vector< std::shared_ptr< N > >	getLeavesUnderNode (std::shared_ptr< N > node) const
std::vector< std::shared_ptr< N > >	removeFathers (const std::shared_ptr< N > node)
void	removeFather (const std::shared_ptr< N > node, const std::shared_ptr< N > father)
std::vector< std::shared_ptr< N > >	removeSons (const std::shared_ptr< N > node)
void	removeSon (const std::shared_ptr< N > node, const std::shared_ptr< N > son)
void	addFather (const std::shared_ptr< N > nodeObject, const std::shared_ptr< N > fatherNodeObject, const std::shared_ptr< E > edgeObject=0)
void	addSon (const std::shared_ptr< N > nodeObject, const std::shared_ptr< N > sonNodeObject, const std::shared_ptr< E > edgeObject=0)
std::unique_ptr< typename AssociationDAGraphObserver< N, E >::NodeIterator >	fathersIterator (std::shared_ptr< N > node)
std::unique_ptr< typename AssociationDAGraphObserver< N, E >::NodeIterator >	fathersIterator (std::shared_ptr< N > node) const
std::unique_ptr< typename AssociationDAGraphObserver< N, E >::NodeIterator >	sonsIterator (std::shared_ptr< N > node)
std::unique_ptr< typename AssociationDAGraphObserver< N, E >::NodeIterator >	sonsIterator (std::shared_ptr< N > node) const
std::vector< std::shared_ptr< N > >	getBelowNodes (const std::shared_ptr< N > localRoot)
	Get Below Objects. More...
std::vector< std::shared_ptr< E > >	getBelowEdges (const std::shared_ptr< N > localRoot)
virtual std::vector< NodeIndex >	getFathers (const NodeIndex node) const =0
virtual bool	hasFather (const NodeIndex node) const =0
virtual std::vector< NodeIndex >	getSons (const NodeIndex node) const =0
virtual NodeIndex	getSon (const EdgeIndex edge) const =0
virtual NodeIndex	getFatherOfEdge (const EdgeIndex edge) const =0
Graph Relations Management
Modificating the structure of the graph.
virtual void	createNode (std::shared_ptr< N > newNodeObject)=0
virtual void	createNode (std::shared_ptr< N > objectOriginNode, std::shared_ptr< N > newNodeObject, std::shared_ptr< E > newEdgeObject=00)=0
virtual void	link (std::shared_ptr< N > nodeObjectA, std::shared_ptr< N > nodeObjectB, std::shared_ptr< E > edgeObject=00)=0
virtual void	unlink (std::shared_ptr< N > nodeObjectA, std::shared_ptr< N > nodeObjectB)=0
virtual void	deleteNode (std::shared_ptr< N > nodeObject)=0
Object Association
Associate or dissociate N and E objects to pre-existing Graph Nodes and Graph Edges
virtual void	associateNode (std::shared_ptr< N > nodeObject, NodeGraphid node)=0
virtual void	associateEdge (std::shared_ptr< E > edgeObject, EdgeGraphid edge)=0
virtual void	dissociateNode (std::shared_ptr< N > nodeObject)=0
virtual void	dissociateEdge (std::shared_ptr< E > edgeObject)=0
virtual NodeGraphid	getNodeGraphid (const std::shared_ptr< N > nodeObject) const =0
virtual EdgeGraphid	getEdgeGraphid (const std::shared_ptr< E > edgeObject) const =0
virtual const std::shared_ptr< N >	getNodeFromGraphid (NodeGraphid) const =0
virtual std::shared_ptr< N >	getNodeFromGraphid (NodeGraphid)=0
virtual std::vector< std::shared_ptr< N > >	getNodesFromGraphid (std::vector< NodeGraphid >) const =0
virtual std::shared_ptr< E >	getEdgeFromGraphid (EdgeGraphid)=0
virtual const std::shared_ptr< E >	getEdgeFromGraphid (EdgeGraphid) const =0
virtual std::vector< std::shared_ptr< E > >	getEdgesFromGraphid (std::vector< EdgeGraphid >) const =0
virtual std::shared_ptr< N >	getRoot () const =0
virtual NodeIndex	getRootIndex () const =0
Object Indexation
Get or set indexes to nodes and edges
virtual bool	hasNodeIndex (const std::shared_ptr< N > nodeObject) const =0
	return if the object has an index. More...
virtual bool	hasEdgeIndex (const std::shared_ptr< E > edgeObject) const =0
virtual NodeIndex	getNodeIndex (const std::shared_ptr< N > nodeObject) const =0
virtual std::vector< NodeIndex >	getNodeIndexes (std::vector< std::shared_ptr< N > > nodeObjects) const =0
virtual EdgeIndex	getEdgeIndex (const std::shared_ptr< E > edgeObject) const =0
virtual std::vector< EdgeIndex >	getEdgeIndexes (std::vector< std::shared_ptr< E > > edgeObjects) const =0
virtual NodeIndex	setNodeIndex (const std::shared_ptr< N > nodeObject, NodeIndex index)=0
virtual EdgeIndex	setEdgeIndex (const std::shared_ptr< E > edgeObject, EdgeIndex index)=0
virtual bool	hasNode (NodeIndex nodeIndex) const =0
virtual bool	hasEdge (EdgeIndex edgeIndex) const =0
virtual std::shared_ptr< N >	getNode (NodeIndex nodeIndex) const =0
virtual std::shared_ptr< E >	getEdge (EdgeIndex edgeIndex) const =0
Iterator interface on Nodes
virtual std::unique_ptr< NodeIterator >	allNodesIterator ()=0
virtual std::unique_ptr< NodeIterator >	allNodesIterator () const =0
virtual std::unique_ptr< NodeIterator >	outgoingNeighborNodesIterator (std::shared_ptr< N > node)=0
virtual std::unique_ptr< NodeIterator >	outgoingNeighborNodesIterator (std::shared_ptr< N > node) const =0
virtual std::unique_ptr< NodeIterator >	incomingNeighborNodesIterator (std::shared_ptr< N > node)=0
virtual std::unique_ptr< NodeIterator >	incomingNeighborNodesIterator (std::shared_ptr< N > node) const =0
virtual std::vector< std::shared_ptr< N > >	getNeighbors (const std::shared_ptr< N > node) const =0
virtual std::vector< NodeIndex >	getNeighbors (NodeIndex node) const =0
virtual std::vector< std::shared_ptr< E > >	getEdges (const std::shared_ptr< N > node) const =0
virtual std::vector< EdgeIndex >	getEdges (NodeIndex node) const =0
virtual std::vector< std::shared_ptr< N > >	getOutgoingNeighbors (const std::shared_ptr< N > node) const =0
virtual std::vector< NodeIndex >	getOutgoingNeighbors (NodeIndex node) const =0
virtual std::vector< std::shared_ptr< E > >	getOutgoingEdges (const std::shared_ptr< N > node) const =0
virtual std::vector< EdgeIndex >	getOutgoingEdges (NodeIndex node) const =0
virtual std::vector< std::shared_ptr< N > >	getIncomingNeighbors (const std::shared_ptr< N > node) const =0
virtual std::vector< NodeIndex >	getIncomingNeighbors (NodeIndex node) const =0
virtual std::vector< std::shared_ptr< E > >	getIncomingEdges (const std::shared_ptr< N > node) const =0
virtual std::vector< EdgeIndex >	getIncomingEdges (NodeIndex node) const =0
virtual std::vector< std::shared_ptr< N > >	getLeavesFromNode (std::shared_ptr< N > node, unsigned int maxDepth) const =0
virtual std::vector< std::shared_ptr< N > >	getAllLeaves () const =0
virtual std::vector< NodeIndex >	getAllLeavesIndexes () const =0
virtual std::vector< std::shared_ptr< N > >	getAllInnerNodes () const =0
virtual std::vector< NodeIndex >	getAllInnerNodesIndexes () const =0
virtual std::vector< std::shared_ptr< N > >	getAllNodes () const =0
virtual std::vector< NodeIndex >	getAllNodesIndexes () const =0
Iterator interface on Edges
virtual std::unique_ptr< EdgeIterator >	allEdgesIterator ()=0
virtual std::unique_ptr< EdgeIterator >	outgoingEdgesIterator (std::shared_ptr< N > node)=0
virtual std::unique_ptr< EdgeIterator >	incomingEdgesIterator (std::shared_ptr< N > node)=0
virtual std::vector< std::shared_ptr< E > >	getAllEdges () const =0
virtual std::vector< EdgeIndex >	getAllEdgesIndexes () const =0
virtual std::shared_ptr< E >	getEdgeLinking (std::shared_ptr< N > nodeA, std::shared_ptr< N > nodeB) const =0
virtual void	setEdgeLinking (std::shared_ptr< N > nodeA, std::shared_ptr< N > nodeB, std::shared_ptr< E > edge)=0
Function called by the subjectGraph
Methods called by the subject graph to make this observer so fit the subject graph
virtual void	deletedEdgesUpdate (const std::vector< unsigned int > &edgesToDelete)=0
virtual void	deletedNodesUpdate (const std::vector< unsigned int > &nodesToDelete)=0
Object Indexation
Get or set indexes to nodes and edges
bool	hasNode (NodeIndex node) const
bool	hasEdge (EdgeIndex edge) const
bool	hasNodeIndex (const Nref nodeObject) const
	return if the object has an index. More...
bool	hasEdgeIndex (const Eref edgeObject) const
NodeIndex	getNodeIndex (const Nref nodeObject) const
std::vector< NodeIndex >	getNodeIndexes (std::vector< Nref > nodes) const
EdgeIndex	getEdgeIndex (const Eref edgeObject) const
std::vector< EdgeIndex >	getEdgeIndexes (std::vector< Eref > edges) const
NodeIndex	setNodeIndex (const Nref nodeObject, NodeIndex index)
EdgeIndex	setEdgeIndex (const Eref edgeObject, EdgeIndex index)
NodeIndex	addNodeIndex (const Nref nodeObject)
EdgeIndex	addEdgeIndex (const Eref edgeObject)
Nref	getNode (NodeIndex node) const
Eref	getEdge (EdgeIndex edge) const
Graph Relations Management
Modificating the structure of the graph.
void	createNode (Nref nodeObject)
void	createNode (Nref objectOriginNode, Nref newNodeObject, Eref newEdgeObject=00)
void	link (Nref nodeObjectA, Nref nodeObjectB, Eref edgeObject=00)
void	unlink (Nref nodeObjectA, Nref nodeObjectB)
void	deleteNode (Nref nodeObject)
Object Association
Associate or dissociate N and E objects to pre-existing Graph Nodes and Graph Edges
void	associateNode (Nref nodeObject, NodeGraphid graphNode)
void	associateEdge (Eref edgeObject, EdgeGraphid graphEdge)
void	dissociateNode (Nref nodeObject)
void	dissociateEdge (Eref edgeObject)
NodeGraphid	getNodeGraphid (const Nref nodeObject) const
EdgeGraphid	getEdgeGraphid (const Eref edgeObject) const
Nref	getNodeFromGraphid (NodeGraphid node)
const Nref	getNodeFromGraphid (NodeGraphid node) const
std::vector< Nref >	getNodesFromGraphid (std::vector< NodeGraphid > nodes) const
Eref	getEdgeFromGraphid (EdgeGraphid edge)
const Eref	getEdgeFromGraphid (EdgeGraphid edge) const
std::vector< Eref >	getEdgesFromGraphid (std::vector< EdgeGraphid > edges) const
void	setRoot (const Nref newRoot)
	set the root (but no checking, to be used at first construction) More...
Nref	getRoot () const
NodeIndex	getRootIndex () const
Topology exploration
These methodes of the graph concern the topology exploration.
void	outputToDot (const std::string &fname, const std::string &name) const
void	outputToDot (std::ostream &out, const std::string &name) const
Iterators on Nodes
std::unique_ptr< typename AssociationGraphObserver< N, E >::NodeIterator >	allNodesIterator ()
std::unique_ptr< typename AssociationGraphObserver< N, E >::NodeIterator >	allNodesIterator () const
std::unique_ptr< typename AssociationGraphObserver< N, E >::NodeIterator >	outgoingNeighborNodesIterator (Nref node)
std::unique_ptr< typename AssociationGraphObserver< N, E >::NodeIterator >	outgoingNeighborNodesIterator (Nref node) const
std::unique_ptr< typename AssociationGraphObserver< N, E >::NodeIterator >	incomingNeighborNodesIterator (Nref node)
std::unique_ptr< typename AssociationGraphObserver< N, E >::NodeIterator >	incomingNeighborNodesIterator (Nref node) const
std::vector< Nref >	getNeighbors (const Nref node) const
std::vector< NodeIndex >	getNeighbors (NodeIndex node) const
std::vector< Eref >	getEdges (const Nref node) const
std::vector< EdgeIndex >	getEdges (NodeIndex node) const
std::vector< Nref >	getOutgoingNeighbors (const Nref node) const
std::vector< NodeIndex >	getOutgoingNeighbors (NodeIndex node) const
std::vector< Eref >	getOutgoingEdges (const Nref node) const
std::vector< EdgeIndex >	getOutgoingEdges (NodeIndex node) const
std::vector< Nref >	getIncomingNeighbors (const Nref node) const
std::vector< NodeIndex >	getIncomingNeighbors (NodeIndex node) const
std::vector< Eref >	getIncomingEdges (const Nref node) const
std::vector< EdgeIndex >	getIncomingEdges (NodeIndex node) const
std::vector< Nref >	getLeavesFromNode (Nref node, unsigned int maxDepth) const
std::vector< Nref >	getAllLeaves () const
std::vector< NodeIndex >	getAllLeavesIndexes () const
std::vector< Nref >	getAllInnerNodes () const
std::vector< NodeIndex >	getAllInnerNodesIndexes () const
std::vector< Nref >	getAllNodes () const
std::vector< NodeIndex >	getAllNodesIndexes () const
std::vector< EdgeIndex >	getAllEdgesIndexes () const
std::unique_ptr< typename AssociationGraphObserver< N, E >::EdgeIterator >	allEdgesIterator ()
std::unique_ptr< typename AssociationGraphObserver< N, E >::EdgeIterator >	allEdgesIterator () const
std::unique_ptr< typename AssociationGraphObserver< N, E >::EdgeIterator >	outgoingEdgesIterator (Nref node)
std::unique_ptr< typename AssociationGraphObserver< N, E >::EdgeIterator >	outgoingEdgesIterator (Nref node) const
std::unique_ptr< typename AssociationGraphObserver< N, E >::EdgeIterator >	incomingEdgesIterator (Nref node)
std::unique_ptr< typename AssociationGraphObserver< N, E >::EdgeIterator >	incomingEdgesIterator (Nref node) const
std::vector< Eref >	getAllEdges () const
bool	isLeaf (const Nref node) const
	Is the node a leaf? More...
bool	isLeaf (const NodeIndex nodeid) const
std::pair< Nref, Nref >	getNodes (Eref edge) const
Eref	getEdgeLinking (Nref nodeA, Nref nodeB) const
void	setEdgeLinking (Nref nodeA, Nref nodeB, Eref edge)
Function called by the subjectGraph
These methodes are called by the subject graph to make this observer so fit the subject graph
void	deletedEdgesUpdate (const std::vector< unsigned int > &edgesToDelete)
void	deletedNodesUpdate (const std::vector< unsigned int > &nodesToDelete)
General Info
General information about the graph
size_t	getNumberOfNodes () const
size_t	getNumberOfEdges () const
size_t	getNumberOfLeaves () const
size_t	getDegree (const Nref node) const

Static Public Member Functions
template<class A , class B >
static B *	copy (const A &a, typename std::enable_if< !std::is_base_of< B, A >::value &&!std::is_abstract< B >::value, B * >::type *=0)
template<class A , class B >
static B *	copy (const A &a, typename std::enable_if< !std::is_base_of< B, A >::value &&std::is_abstract< B >::value, B * >::type *=0)
template<class A , class B >
static B *	copy (const A &a, typename std::enable_if< std::is_base_of< B, A >::value &&!std::is_abstract< A >::value, B * >::type *=0)
template<class A , class B >
static B *	copy (const A &a, typename std::enable_if< std::is_base_of< B, A >::value &&std::is_abstract< A >::value &&std::is_base_of< Clonable, A >::value, B * >::type *=0)
template<class A , class B >
static B *	copy (const A &a, typename std::enable_if< std::is_base_of< B, A >::value &&std::is_abstract< A >::value &&!std::is_base_of< Clonable, A >::value, B * >::type *=0)

Protected Attributes
std::shared_ptr< DAGraphImpl >	subjectGraph_
const std::shared_ptr< DAGraphImpl >	getGraph () const
std::shared_ptr< DAGraphImpl >	getGraph ()
bool	hasNode (Nref nodeObject) const
bool	hasEdge (Eref edgeObject) const
std::string	nodeToString (const Nref nodeObject) const
std::string	edgeToString (const Eref edgeObject) const
enum	neighborType
std::vector< Nref >	graphidToN_
std::vector< Eref >	graphidToE_
std::map< Nref, NodeGraphid >	NToGraphid_
std::map< Eref, EdgeGraphid >	EToGraphid_
std::vector< Nref >	indexToN_
std::vector< Eref >	indexToE_
std::map< Nref, NodeIndex >	NToIndex_
std::map< Eref, EdgeIndex >	EToIndex_
std::vector< Nref >	getNeighbors_ (const Nref nodeObject, neighborType type) const
std::vector< Eref >	getEdges_ (const Nref nodeObject, neighborType type) const

Detailed Description

template<class N, class E, class DAGraphImpl>
class bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >

Definition at line 57 of file AssociationDAGraphImplObserver.h.

Member Typedef Documentation

EdgeGraphid

template<class N , class E , class DAGraphImpl >

typedef Graph::EdgeId bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::EdgeGraphid

Definition at line 66 of file AssociationDAGraphImplObserver.h.

EdgeIndex

template<class N , class E , class DAGraphImpl >

typedef AssociationGraphObserver<N, E>::EdgeIndex bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::EdgeIndex

Definition at line 63 of file AssociationDAGraphImplObserver.h.

EdgeIterator

template<class N , class E >

typedef AssociationGraphObserver<N, E>::EdgeIterator bpp::AssociationDAGraphObserver< N, E >::EdgeIterator

inherited

Definition at line 226 of file AssociationDAGraphObserver.h.

Eref

using bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::Eref = std::shared_ptr<E>

inherited

Definition at line 71 of file AssociationGraphImplObserver.h.

NodeGraphid

template<class N , class E , class DAGraphImpl >

typedef Graph::NodeId bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::NodeGraphid

Definition at line 65 of file AssociationDAGraphImplObserver.h.

NodeIndex

template<class N , class E , class DAGraphImpl >

typedef AssociationGraphObserver<N, E>::NodeIndex bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::NodeIndex

Definition at line 62 of file AssociationDAGraphImplObserver.h.

NodeIterator

template<class N , class E >

typedef AssociationGraphObserver<N, E>::NodeIterator bpp::AssociationDAGraphObserver< N, E >::NodeIterator

inherited

Iterators

Definition at line 225 of file AssociationDAGraphObserver.h.

Nref

using bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::Nref = std::shared_ptr<N>

inherited

Definition at line 72 of file AssociationGraphImplObserver.h.

Member Enumeration Documentation

neighborType

enum bpp::AssociationGraphImplObserver::neighborType

privateinherited

defines a type of neighbors : incoming and/or outgoing

Definition at line 415 of file AssociationGraphImplObserver.h.

Constructor & Destructor Documentation

AssociationDAGraphImplObserver() [1/4]

template<class N , class E , class DAGraphImpl >

bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::AssociationDAGraphImplObserver ( )

inline

Constructor

Definition at line 73 of file AssociationDAGraphImplObserver.h.

AssociationDAGraphImplObserver() [2/4]

template<class N , class E , class DAGraphImpl >

bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::AssociationDAGraphImplObserver ( std::shared_ptr< DAGraphImpl >  subjectDAGraph )

inline

Constructor

Parameters

subjectDAGraph

the DAGraph which is observed

Definition at line 82 of file AssociationDAGraphImplObserver.h.

AssociationDAGraphImplObserver() [3/4]

template<class N , class E , class DAGraphImpl >

bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::AssociationDAGraphImplObserver ( bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl > const &  dAGraphObserver )

inline

Copy Constructor

Parameters

dAGraphObserver

the DAGraphObserver to be copied

Definition at line 91 of file AssociationDAGraphImplObserver.h.

AssociationDAGraphImplObserver() [4/4]

template<class N , class E , class DAGraphImpl >

template<class N2 , class E2 >

bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::AssociationDAGraphImplObserver ( bpp::AssociationDAGraphImplObserver< N2, E2, DAGraphImpl > const &  dAGraphObserver )

inline

Copy Constructor

Parameters

dAGraphObserver

the DAGraphObserver to be copied

Definition at line 102 of file AssociationDAGraphImplObserver.h.

~AssociationDAGraphImplObserver()

template<class N , class E , class DAGraphImpl >

bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::~AssociationDAGraphImplObserver ( )

inline

Destructor

Definition at line 119 of file AssociationDAGraphImplObserver.h.

Member Function Documentation

addEdgeIndex()

EdgeIndex bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::addEdgeIndex ( const Eref  edgeObject )

inlineinherited

Add an index associated to an edge

Parameters

edgeObject

object to which one want to set the index

Returns

the given index

Definition at line 888 of file AssociationGraphImplObserver.h.

addFather()

template<class N , class E , class DAGraphImpl >

void bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::addFather ( const std::shared_ptr< N >  nodeObject, const std::shared_ptr< N >  fatherNodeObject, const std::shared_ptr< E >  edgeObject = 0  )

inlinevirtual

Add a father to a node

Parameters

nodeObject	the concerned node
fatherNodeObject	the node to be added as a father to the node
edgeObject	the optional edge between the nodes (default = 00)

Implements bpp::AssociationDAGraphObserver< N, E >.

Definition at line 307 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getEdgeGraphid(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeGraphid(), and bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::link().

addNodeIndex()

NodeIndex bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::addNodeIndex ( const Nref  nodeObject )

inlineinherited

Set an new index associated to a node

Parameters

nodeObject

object to which one want to set the index

Returns

the given index

Definition at line 857 of file AssociationGraphImplObserver.h.

addSon()

template<class N , class E , class DAGraphImpl >

void bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::addSon ( const std::shared_ptr< N >  nodeObject, const std::shared_ptr< N >  sonNodeObject, const std::shared_ptr< E >  edgeObject = 0  )

inlinevirtual

Add a son to a node

Parameters

nodeObject	the concerned node
sonNodeObject	the node to be added as a son to the father
edgeObject	the optional edge between the nodes (default = 00)

Implements bpp::AssociationDAGraphObserver< N, E >.

Definition at line 329 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getEdgeGraphid(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeGraphid(), and bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::link().

allEdgesIterator() [1/3]

std::unique_ptr<typename AssociationGraphObserver<N, E>::EdgeIterator> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::allEdgesIterator ( )

inlinevirtualinherited

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1399 of file AssociationGraphImplObserver.h.

allEdgesIterator() [2/3]

std::unique_ptr<typename AssociationGraphObserver<N, E>::EdgeIterator> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::allEdgesIterator ( ) const

inlineinherited

Definition at line 1404 of file AssociationGraphImplObserver.h.

allEdgesIterator() [3/3]

template<class N , class E >

virtual std::unique_ptr<EdgeIterator> bpp::AssociationGraphObserver< N, E >::allEdgesIterator ( )

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

allNodesIterator() [1/4]

std::unique_ptr<typename AssociationGraphObserver<N, E>::NodeIterator> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::allNodesIterator ( )

inlinevirtualinherited

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1061 of file AssociationGraphImplObserver.h.

allNodesIterator() [2/4]

std::unique_ptr<typename AssociationGraphObserver<N, E>::NodeIterator> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::allNodesIterator ( ) const

inlinevirtualinherited

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1066 of file AssociationGraphImplObserver.h.

allNodesIterator() [3/4]

template<class N , class E >

virtual std::unique_ptr<NodeIterator> bpp::AssociationGraphObserver< N, E >::allNodesIterator ( ) const

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

allNodesIterator() [4/4]

template<class N , class E >

virtual std::unique_ptr<NodeIterator> bpp::AssociationGraphObserver< N, E >::allNodesIterator ( )

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

associateEdge() [1/2]

void bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::associateEdge ( Eref  edgeObject, EdgeGraphid  graphEdge  )

inlinevirtualinherited

Associate a E object to an edge in the graph.

Parameters

edgeObject	object to associate
graphEdge	existing edge to be associated

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 590 of file AssociationGraphImplObserver.h.

associateEdge() [2/2]

template<class N , class E >

virtual void bpp::AssociationGraphObserver< N, E >::associateEdge ( std::shared_ptr< E >  edgeObject, EdgeGraphid  edge  )

pure virtualinherited

Associate a E object to an edge in the graph.

Parameters

edgeObject	object to associate
edge	existing edge to be associated

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

associateNode() [1/2]

void bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::associateNode ( Nref  nodeObject, NodeGraphid  graphNode  )

inlinevirtualinherited

Associate a N object to a node in the graph.

Parameters

nodeObject	object to associate
graphNode	existing node to be associated

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 570 of file AssociationGraphImplObserver.h.

associateNode() [2/2]

template<class N , class E >

virtual void bpp::AssociationGraphObserver< N, E >::associateNode ( std::shared_ptr< N >  nodeObject, NodeGraphid  node  )

pure virtualinherited

Associate a N object to a node in the graph.

Parameters

nodeObject	object to associate
node	existing node to be associated

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

clone()

template<class N , class E , class DAGraphImpl >

AssociationDAGraphImplObserver<N, E, DAGraphImpl>* bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::clone ( ) const

inlinevirtual

clone function

Implements bpp::Clonable.

Definition at line 125 of file AssociationDAGraphImplObserver.h.

copy() [1/5]

template<class N , class E >

template<class A , class B >

static B* bpp::AssociationGraphObserver< N, E >::copy ( const A &  a, typename std::enable_if< !std::is_base_of< B, A >::value &&!std::is_abstract< B >::value, B * >::type *  = 0  )

inlinestaticinherited

Specific copy of A and B objects, if clonable or not.

Definition at line 82 of file AssociationGraphObserver.h.

copy() [2/5]

template<class N , class E >

template<class A , class B >

static B* bpp::AssociationGraphObserver< N, E >::copy ( const A &  a, typename std::enable_if< !std::is_base_of< B, A >::value &&std::is_abstract< B >::value, B * >::type *  = 0  )

inlinestaticinherited

Definition at line 88 of file AssociationGraphObserver.h.

copy() [3/5]

template<class N , class E >

template<class A , class B >

static B* bpp::AssociationGraphObserver< N, E >::copy ( const A &  a, typename std::enable_if< std::is_base_of< B, A >::value &&!std::is_abstract< A >::value, B * >::type *  = 0  )

inlinestaticinherited

Definition at line 95 of file AssociationGraphObserver.h.

copy() [4/5]

template<class N , class E >

template<class A , class B >

static B* bpp::AssociationGraphObserver< N, E >::copy ( const A &  a, typename std::enable_if< std::is_base_of< B, A >::value &&std::is_abstract< A >::value &&!std::is_base_of< Clonable, A >::value, B * >::type *  = 0  )

inlinestaticinherited

Definition at line 107 of file AssociationGraphObserver.h.

copy() [5/5]

template<class N , class E >

template<class A , class B >

static B* bpp::AssociationGraphObserver< N, E >::copy ( const A &  a, typename std::enable_if< std::is_base_of< B, A >::value &&std::is_abstract< A >::value &&std::is_base_of< Clonable, A >::value, B * >::type *  = 0  )

inlinestaticinherited

Definition at line 101 of file AssociationGraphObserver.h.

createNode() [1/4]

void bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::createNode ( Nref  nodeObject )

inlinevirtualinherited

Creates an orphaned node from a NodeClass object.

Parameters

nodeObject

the N object associated to the node in the graph.

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 474 of file AssociationGraphImplObserver.h.

createNode() [2/4]

void bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::createNode ( Nref  objectOriginNode, Nref  newNodeObject, Eref  newEdgeObject = 00  )

inlinevirtualinherited

Creates an node linked to an existing node. Order of parameters match the link method.

Parameters

objectOriginNode	existing node. In a directed graph: origin -> newNode.
newNodeObject	the N object associated to the node in the graph.
newEdgeObject	the optional edge between the nodes (default = 00)

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 491 of file AssociationGraphImplObserver.h.

createNode() [3/4]

template<class N , class E >

virtual void bpp::AssociationGraphObserver< N, E >::createNode ( std::shared_ptr< N >  newNodeObject )

pure virtualinherited

Creates an orphaned node from a NodeClass object.

Parameters

newNodeObject

the N object associated to the node in the graph.

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

createNode() [4/4]

template<class N , class E >

virtual void bpp::AssociationGraphObserver< N, E >::createNode ( std::shared_ptr< N >  objectOriginNode, std::shared_ptr< N >  newNodeObject, std::shared_ptr< E >  newEdgeObject = 00  )

pure virtualinherited

Creates an node linked to an existing node. Order of parameters match the link method.

Parameters

newNodeObject	the N object associated to the node in the graph.
objectOriginNode	existing node. In a directed graph: origin -> newNode.
newEdgeObject	optional edge between nodes (default = 00)

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

deletedEdgesUpdate() [1/2]

void bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::deletedEdgesUpdate ( const std::vector< unsigned int > &  edgesToDelete )

inlinevirtualinherited

Delete unused object edges, since they have been deleted in the graph

Parameters

edgesToDelete

a vector of Edges to delete

Implements bpp::GraphObserver.

Definition at line 1513 of file AssociationGraphImplObserver.h.

deletedEdgesUpdate() [2/2]

virtual void bpp::GraphObserver::deletedEdgesUpdate ( const std::vector< unsigned int > &  edgesToDelete )

pure virtualinherited

Delete unused object edges, since they have been deleted in the graph

Parameters

edgesToDelete

a vector of Edges to delete

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

deletedNodesUpdate() [1/2]

void bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::deletedNodesUpdate ( const std::vector< unsigned int > &  nodesToDelete )

inlinevirtualinherited

Delete unused object nodes, since they have been deleted in the graph

Parameters

nodesToDelete

a vector of N to delete

Implements bpp::GraphObserver.

Definition at line 1531 of file AssociationGraphImplObserver.h.

deletedNodesUpdate() [2/2]

virtual void bpp::GraphObserver::deletedNodesUpdate ( const std::vector< unsigned int > &  nodesToDelete )

pure virtualinherited

Delete unused object nodes, since they have been deleted in the graph

Parameters

nodesToDelete

a vector of N to delete

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

deleteNode() [1/2]

void bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::deleteNode ( Nref  nodeObject )

inlinevirtualinherited

Deletes a node

Parameters

nodeObject

node to be deleted. The N node object given in argument is not deleted.

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 549 of file AssociationGraphImplObserver.h.

deleteNode() [2/2]

template<class N , class E >

virtual void bpp::AssociationGraphObserver< N, E >::deleteNode ( std::shared_ptr< N >  nodeObject )

pure virtualinherited

Deletes a node

Parameters

nodeObject

node to be deleted

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

dissociateEdge() [1/2]

void bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::dissociateEdge ( Eref  edgeObject )

inlinevirtualinherited

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 617 of file AssociationGraphImplObserver.h.

dissociateEdge() [2/2]

template<class N , class E >

virtual void bpp::AssociationGraphObserver< N, E >::dissociateEdge ( std::shared_ptr< E >  edgeObject )

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

dissociateNode() [1/2]

void bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::dissociateNode ( Nref  nodeObject )

inlinevirtualinherited

Dissociate a N or E object to a node or an edge in the graph.

Parameters

nodeObject

object to dissociate

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 609 of file AssociationGraphImplObserver.h.

dissociateNode() [2/2]

template<class N , class E >

virtual void bpp::AssociationGraphObserver< N, E >::dissociateNode ( std::shared_ptr< N >  nodeObject )

pure virtualinherited

Dissociate a N or E object to a node or an edge in the graph. Graph is not changed.

Parameters

nodeObject

object to dissociate

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

edgeToString()

std::string bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::edgeToString ( const Eref  edgeObject ) const

inlineinherited

Definition at line 397 of file AssociationGraphImplObserver.h.

fathersIterator() [1/2]

template<class N , class E , class DAGraphImpl >

std::unique_ptr<typename AssociationDAGraphObserver<N, E>::NodeIterator> bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::fathersIterator ( std::shared_ptr< N >  node )

inlinevirtual

Iterators

Implements bpp::AssociationDAGraphObserver< N, E >.

Definition at line 353 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::incomingNeighborNodesIterator().

fathersIterator() [2/2]

template<class N , class E , class DAGraphImpl >

std::unique_ptr<typename AssociationDAGraphObserver<N, E>::NodeIterator> bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::fathersIterator ( std::shared_ptr< N >  node ) const

inlinevirtual

Implements bpp::AssociationDAGraphObserver< N, E >.

Definition at line 358 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::incomingNeighborNodesIterator().

getAllEdges() [1/2]

std::vector<Eref > bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getAllEdges ( ) const

inlinevirtualinherited

Get all the defined branches of a graph,

Returns

a vector containing the branchesObjects

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1441 of file AssociationGraphImplObserver.h.

getAllEdges() [2/2]

template<class N , class E >

virtual std::vector<std::shared_ptr<E> > bpp::AssociationGraphObserver< N, E >::getAllEdges ( ) const

pure virtualinherited

Get all the defined edges of a graphO,

Returns

a vector containing the branchesObjects

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getAllEdgesIndexes() [1/2]

std::vector<EdgeIndex> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getAllEdgesIndexes ( ) const

inlinevirtualinherited

Get indexes of all defined edges of a graph,

Returns

a vector containing the edgesObjects

They are in the same order as the graphIds (and not necessary Indexes).

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1352 of file AssociationGraphImplObserver.h.

getAllEdgesIndexes() [2/2]

template<class N , class E >

virtual std::vector<EdgeIndex> bpp::AssociationGraphObserver< N, E >::getAllEdgesIndexes ( ) const

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getAllInnerNodes() [1/2]

std::vector<Nref > bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getAllInnerNodes ( ) const

inlinevirtualinherited

Get all the inner nodes of a graph, ie, nodes with degree >= 2.

Returns

a vector containing the inner nodes.

They are in the same order as the graphIds (and not necessary Indexes).

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1272 of file AssociationGraphImplObserver.h.

getAllInnerNodes() [2/2]

template<class N , class E >

virtual std::vector<std::shared_ptr<N> > bpp::AssociationGraphObserver< N, E >::getAllInnerNodes ( ) const

pure virtualinherited

Get all the inner nodes of a graph, ie, nodes with degree >= 2.

Returns

a vector containing the inner nodes.

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getAllInnerNodesIndexes() [1/2]

std::vector<NodeIndex> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getAllInnerNodesIndexes ( ) const

inlinevirtualinherited

Get the indexes of all inner nodes of a graph, ie, nodes with degree >= 2.

Returns

a vector containing the inner nodes.

They are in the same order as the graphIds (and not necessary Indexes).

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1293 of file AssociationGraphImplObserver.h.

getAllInnerNodesIndexes() [2/2]

template<class N , class E >

virtual std::vector<NodeIndex> bpp::AssociationGraphObserver< N, E >::getAllInnerNodesIndexes ( ) const

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getAllLeaves() [1/2]

std::vector<Nref > bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getAllLeaves ( ) const

inlinevirtualinherited

Get all the leaves objects of a graph, ie, nodes with only one neighbor,

Returns

a vector containing the leaves

They are in the same order as the graphIds (and not necessary Indexes).

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1229 of file AssociationGraphImplObserver.h.

getAllLeaves() [2/2]

template<class N , class E >

virtual std::vector<std::shared_ptr<N> > bpp::AssociationGraphObserver< N, E >::getAllLeaves ( ) const

pure virtualinherited

Get all the leaves objects of a graph, ie, nodes with only one neighbor,

Returns

a vector containing the leaves

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getAllLeavesIndexes() [1/2]

std::vector<NodeIndex> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getAllLeavesIndexes ( ) const

inlinevirtualinherited

Get index of the leaves objects of a graph, ie, nodes with only one neighbor,

Returns

a vector containing the leaves

They are in the same order as the graphIds (and not necessary Indexes).

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1250 of file AssociationGraphImplObserver.h.

getAllLeavesIndexes() [2/2]

template<class N , class E >

virtual std::vector<NodeIndex> bpp::AssociationGraphObserver< N, E >::getAllLeavesIndexes ( ) const

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getAllNodes() [1/2]

std::vector<Nref > bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getAllNodes ( ) const

inlinevirtualinherited

Get all the defined nodes of a graph,

Returns

a vector containing the nodesObjects

They are in the same order as the graphIds (and not necessary Indexes).

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1314 of file AssociationGraphImplObserver.h.

getAllNodes() [2/2]

template<class N , class E >

virtual std::vector<std::shared_ptr<N> > bpp::AssociationGraphObserver< N, E >::getAllNodes ( ) const

pure virtualinherited

Get all the defined nodes of a graphO,

Returns

a vector containing the nodesObjects

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getAllNodesIndexes() [1/2]

std::vector<NodeIndex> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getAllNodesIndexes ( ) const

inlinevirtualinherited

Get indexes of all defined nodes of a graph,

Returns

a vector containing the nodesObjects

They are in the same order as the graphIds (and not necessary Indexes).

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1333 of file AssociationGraphImplObserver.h.

getAllNodesIndexes() [2/2]

template<class N , class E >

virtual std::vector<NodeIndex> bpp::AssociationGraphObserver< N, E >::getAllNodesIndexes ( ) const

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getBelowEdges()

template<class N , class E , class DAGraphImpl >

std::vector<std::shared_ptr<E> > bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::getBelowEdges ( const std::shared_ptr< N >  localRoot )

inlinevirtual

Implements bpp::AssociationDAGraphObserver< N, E >.

Definition at line 389 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, GraphImpl >::getEdgesFromGraphid(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph(), and bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeGraphid().

getBelowNodes()

template<class N , class E , class DAGraphImpl >

std::vector<std::shared_ptr<N> > bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::getBelowNodes ( const std::shared_ptr< N >  localRoot )

inlinevirtual

Get Below Objects.

Parameters

localRoot

of the subgraph.

Returns

A vector of ancestor nodes ids.

Implements bpp::AssociationDAGraphObserver< N, E >.

Definition at line 384 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeGraphid(), and bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodesFromGraphid().

getDegree()

size_t bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getDegree ( const Nref  node ) const

inlineinherited

Return the number of neighbors of a node

Parameters

node	the concerned node

Returns

the number of neighbors

Definition at line 1595 of file AssociationGraphImplObserver.h.

getEdge() [1/2]

Eref bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getEdge ( EdgeIndex  edge ) const

inlinevirtualinherited

Return the associated Node index

Parameters

edge	object which to return the node index

Returns

a node index

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 947 of file AssociationGraphImplObserver.h.

getEdge() [2/2]

template<class N , class E >

virtual std::shared_ptr<E> bpp::AssociationGraphObserver< N, E >::getEdge ( EdgeIndex  edgeIndex ) const

pure virtualinherited

Return the associated Node index

Parameters

edgeIndex

the index of the wanted edge

Returns

E, an edge object

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getEdgeFromGraphid() [1/4]

Eref bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getEdgeFromGraphid ( EdgeGraphid  edge )

inlinevirtualinherited

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 685 of file AssociationGraphImplObserver.h.

getEdgeFromGraphid() [2/4]

const Eref bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getEdgeFromGraphid ( EdgeGraphid  edge ) const

inlinevirtualinherited

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 693 of file AssociationGraphImplObserver.h.

getEdgeFromGraphid() [3/4]

template<class N , class E >

virtual const std::shared_ptr<E> bpp::AssociationGraphObserver< N, E >::getEdgeFromGraphid ( EdgeGraphid  ) const

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getEdgeFromGraphid() [4/4]

template<class N , class E >

virtual std::shared_ptr<E> bpp::AssociationGraphObserver< N, E >::getEdgeFromGraphid ( EdgeGraphid  )

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getEdgeGraphid() [1/2]

EdgeGraphid bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getEdgeGraphid ( const Eref  edgeObject ) const

inlinevirtualinherited

Return the associated Edge ID

Parameters

edgeObject

object which to return the node ID

Returns

a edge ID

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 644 of file AssociationGraphImplObserver.h.

getEdgeGraphid() [2/2]

template<class N , class E >

virtual EdgeGraphid bpp::AssociationGraphObserver< N, E >::getEdgeGraphid ( const std::shared_ptr< E >  edgeObject ) const

pure virtualinherited

Return the associated Node ID

Parameters

edgeObject

object which to return the node ID

Returns

a node ID

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getEdgeIndex() [1/2]

EdgeIndex bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getEdgeIndex ( const Eref  edgeObject ) const

inlinevirtualinherited

Return the associated Node index

Parameters

edgeObject

object which to return the node index

Returns

a node index

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 787 of file AssociationGraphImplObserver.h.

getEdgeIndex() [2/2]

template<class N , class E >

virtual EdgeIndex bpp::AssociationGraphObserver< N, E >::getEdgeIndex ( const std::shared_ptr< E >  edgeObject ) const

pure virtualinherited

Return the associated Node index

Parameters

edgeObject

object which to return the node index

Returns

a node index

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getEdgeIndexes() [1/2]

std::vector<EdgeIndex> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getEdgeIndexes ( std::vector< Eref >  edges ) const

inlinevirtualinherited

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 795 of file AssociationGraphImplObserver.h.

getEdgeIndexes() [2/2]

template<class N , class E >

virtual std::vector<EdgeIndex> bpp::AssociationGraphObserver< N, E >::getEdgeIndexes ( std::vector< std::shared_ptr< E > >  edgeObjects ) const

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getEdgeLinking() [1/2]

Eref bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getEdgeLinking ( Nref  nodeA, Nref  nodeB  ) const

inlinevirtualinherited

Returns the Edge between two nodes nodeA -> nodeB

Parameters

nodeA	source node (if directed)
nodeB	destination node (if directed)

Returns

the edge between these two nodes, or 0 if edge does not exist

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1485 of file AssociationGraphImplObserver.h.

getEdgeLinking() [2/2]

template<class N , class E >

virtual std::shared_ptr<E> bpp::AssociationGraphObserver< N, E >::getEdgeLinking ( std::shared_ptr< N >  nodeA, std::shared_ptr< N >  nodeB  ) const

pure virtualinherited

Returns the Edge between two nodes nodeA -> nodeB

Parameters

nodeA	source node (if directed)
nodeB	destination node (if directed)

Returns

the edge between these two nodes

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getEdges() [1/4]

std::vector<Eref > bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getEdges ( const Nref  node ) const

inlinevirtualinherited

Get all the edges of a node in the graph.

Parameters

node	the node one wants to get its edges

Returns

a vector containing the edges

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1132 of file AssociationGraphImplObserver.h.

getEdges() [2/4]

template<class N , class E >

virtual std::vector<std::shared_ptr<E> > bpp::AssociationGraphObserver< N, E >::getEdges ( const std::shared_ptr< N >  node ) const

pure virtualinherited

Get all the edges from/to a node in the graph.

Parameters

node	the node one wants to get its neighbor edges

Returns

a vector containing the edges

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getEdges() [3/4]

std::vector<EdgeIndex> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getEdges ( NodeIndex  node ) const

inlinevirtualinherited

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1137 of file AssociationGraphImplObserver.h.

getEdges() [4/4]

template<class N , class E >

virtual std::vector<EdgeIndex> bpp::AssociationGraphObserver< N, E >::getEdges ( NodeIndex  node ) const

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getEdges_()

std::vector<Eref > bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getEdges_ ( const Nref  nodeObject, neighborType  type  ) const

inlineprivateinherited

Get incoming / outgoing edges according to the enum type

Definition at line 443 of file AssociationGraphImplObserver.h.

getEdgesFromGraphid() [1/2]

std::vector<Eref > bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getEdgesFromGraphid ( std::vector< EdgeGraphid >  edges ) const

inlinevirtualinherited

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 701 of file AssociationGraphImplObserver.h.

getEdgesFromGraphid() [2/2]

template<class N , class E >

virtual std::vector<std::shared_ptr<E> > bpp::AssociationGraphObserver< N, E >::getEdgesFromGraphid ( std::vector< EdgeGraphid >  ) const

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getFatherOfEdge() [1/3]

template<class N , class E , class DAGraphImpl >

NodeIndex bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::getFatherOfEdge ( const EdgeIndex  edge ) const

inline

Definition at line 229 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getEdge(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getEdgeGraphid(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeFromGraphid(), and bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeIndex().

getFatherOfEdge() [2/3]

template<class N , class E >

virtual NodeIndex bpp::AssociationDAGraphObserver< N, E >::getFatherOfEdge ( const EdgeIndex  edge ) const

pure virtualinherited

getFatherOfEdge() [3/3]

template<class N , class E , class DAGraphImpl >

std::shared_ptr<N> bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::getFatherOfEdge ( const std::shared_ptr< E >  edge ) const

inlinevirtual

Return the father of an edge

Parameters

edge	the concerned edge

Returns

the father Node

Implements bpp::AssociationDAGraphObserver< N, E >.

Definition at line 224 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getEdgeGraphid(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph(), and bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeFromGraphid().

getFathers() [1/3]

template<class N , class E , class DAGraphImpl >

std::vector<NodeIndex> bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::getFathers ( const NodeIndex  node ) const

inline

Definition at line 160 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::getFathers(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNode(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeGraphid(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeIndexes(), and bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodesFromGraphid().

getFathers() [2/3]

template<class N , class E >

virtual std::vector<NodeIndex> bpp::AssociationDAGraphObserver< N, E >::getFathers ( const NodeIndex  node ) const

pure virtualinherited

getFathers() [3/3]

template<class N , class E , class DAGraphImpl >

std::vector<std::shared_ptr<N> > bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::getFathers ( const std::shared_ptr< N >  node ) const

inlinevirtual

Return the fathers of a node

Parameters

node	the concerned node

Returns

a vector of son Nodes

Implements bpp::AssociationDAGraphObserver< N, E >.

Definition at line 155 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeGraphid(), and bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodesFromGraphid().

Referenced by bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::getFathers().

getGraph() [1/2]

std::shared_ptr<DAGraphImpl > bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph ( )

inlineinherited

Definition at line 356 of file AssociationGraphImplObserver.h.

getGraph() [2/2]

const std::shared_ptr<DAGraphImpl > bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph ( ) const

inlineinherited

Definition at line 351 of file AssociationGraphImplObserver.h.

getIncomingEdges() [1/4]

std::vector<Eref > bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getIncomingEdges ( const Nref  node ) const

inlinevirtualinherited

In an directed graph, get all the edges which are coming to a node in the graph.

Parameters

node	the node one wants to get its edges

Returns

a vector containing the incoming edges

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1198 of file AssociationGraphImplObserver.h.

getIncomingEdges() [2/4]

template<class N , class E >

virtual std::vector<std::shared_ptr<E> > bpp::AssociationGraphObserver< N, E >::getIncomingEdges ( const std::shared_ptr< N >  node ) const

pure virtualinherited

In an directed graph, get all the edges which are coming to a node in the graph.

Parameters

node	the node one wants to get its edges

Returns

a vector containing the incoming edges

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getIncomingEdges() [3/4]

std::vector<EdgeIndex> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getIncomingEdges ( NodeIndex  node ) const

inlinevirtualinherited

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1203 of file AssociationGraphImplObserver.h.

getIncomingEdges() [4/4]

template<class N , class E >

virtual std::vector<EdgeIndex> bpp::AssociationGraphObserver< N, E >::getIncomingEdges ( NodeIndex  node ) const

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getIncomingNeighbors() [1/4]

std::vector<Nref > bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getIncomingNeighbors ( const Nref  node ) const

inlinevirtualinherited

In an directed graph, get all the neighbors which are coming to a node in the graph.

Parameters

node	the node one wants to get its neighbors

Returns

a vector containing the incoming neighbors

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1181 of file AssociationGraphImplObserver.h.

getIncomingNeighbors() [2/4]

template<class N , class E >

virtual std::vector<std::shared_ptr<N> > bpp::AssociationGraphObserver< N, E >::getIncomingNeighbors ( const std::shared_ptr< N >  node ) const

pure virtualinherited

In an directed graph, get all the neighbors which are coming to a node in the graph.

Parameters

node	the node one wants to get its neighbors

Returns

a vector containing the incoming neighbors

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getIncomingNeighbors() [3/4]

std::vector<NodeIndex> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getIncomingNeighbors ( NodeIndex  node ) const

inlinevirtualinherited

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1186 of file AssociationGraphImplObserver.h.

getIncomingNeighbors() [4/4]

template<class N , class E >

virtual std::vector<NodeIndex> bpp::AssociationGraphObserver< N, E >::getIncomingNeighbors ( NodeIndex  node ) const

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getLeavesFromNode() [1/2]

std::vector<Nref > bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getLeavesFromNode ( Nref  node, unsigned int  maxDepth  ) const

inlinevirtualinherited

Get the leaves of a graph, ie, nodes with only one neighbor, starting from a peculiar node, with maxDepth recursion depths.

Parameters

node	the starting node
maxDepth	the max recursion depth

Returns

a vector containing the leaves

They are in the same order as the graphIds (and not necessary Indexes).

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1218 of file AssociationGraphImplObserver.h.

getLeavesFromNode() [2/2]

template<class N , class E >

virtual std::vector<std::shared_ptr<N> > bpp::AssociationGraphObserver< N, E >::getLeavesFromNode ( std::shared_ptr< N >  node, unsigned int  maxDepth  ) const

pure virtualinherited

Get the leaves of a graph, ie, nodes with only one neighbor, starting from a peculiar node, up to a specific depth.

Parameters

node	the starting node
maxDepth	the max recursion depth

Returns

a vector containing the leaves

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getLeavesUnderNode()

template<class N , class E , class DAGraphImpl >

std::vector<std::shared_ptr<N> > bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::getLeavesUnderNode ( std::shared_ptr< N >  node ) const

inlinevirtual

Get the leaves of a DAG under a peculiar node.

Parameters

node	the starting node

Returns

a vector containing the leaves

Implements bpp::AssociationDAGraphObserver< N, E >.

Definition at line 260 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeGraphid(), and bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodesFromGraphid().

getNeighbors() [1/4]

std::vector<Nref > bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNeighbors ( const Nref  node ) const

inlinevirtualinherited

Get all the neighbors of a node in the graph.

Parameters

node	the node one wants to get its neighbors

Returns

a vector containing the neighbors

They are in the same order as the graphIds (and not necessary Indexes).

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1109 of file AssociationGraphImplObserver.h.

getNeighbors() [2/4]

template<class N , class E >

virtual std::vector<std::shared_ptr<N> > bpp::AssociationGraphObserver< N, E >::getNeighbors ( const std::shared_ptr< N >  node ) const

pure virtualinherited

Get all the neighbors of a node in the graph.

Parameters

node	the node one wants to get its neighbors

Returns

a vector containing the neighbors

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getNeighbors() [3/4]

std::vector<NodeIndex> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNeighbors ( NodeIndex  node ) const

inlinevirtualinherited

Get the index of all neighbors of a node in the graph.

Parameters

node	the node one wants to get its neighbors

Returns

a vector containing the neighbors

They are in the same order as the graphIds (and not necessary Indexes).

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1121 of file AssociationGraphImplObserver.h.

getNeighbors() [4/4]

template<class N , class E >

virtual std::vector<NodeIndex> bpp::AssociationGraphObserver< N, E >::getNeighbors ( NodeIndex  node ) const

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getNeighbors_()

std::vector<Nref > bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNeighbors_ ( const Nref  nodeObject, neighborType  type  ) const

inlineprivateinherited

Get incoming / outgoing neighbors according to the enum type

Definition at line 420 of file AssociationGraphImplObserver.h.

getNode() [1/2]

Nref bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNode ( NodeIndex  node ) const

inlinevirtualinherited

Return the associated Node index

Parameters

node	object which to return the node index

Returns

a node index

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 937 of file AssociationGraphImplObserver.h.

getNode() [2/2]

template<class N , class E >

virtual std::shared_ptr<N> bpp::AssociationGraphObserver< N, E >::getNode ( NodeIndex  nodeIndex ) const

pure virtualinherited

Return the associated Node, querying with an index

Parameters

nodeIndex

the index of the wanted node

Returns

N, a node object

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getNodeFromGraphid() [1/4]

Nref bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeFromGraphid ( NodeGraphid  node )

inlinevirtualinherited

Transforms an (a list of) id(s) into an (a list of) object(s)

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 656 of file AssociationGraphImplObserver.h.

getNodeFromGraphid() [2/4]

const Nref bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeFromGraphid ( NodeGraphid  node ) const

inlinevirtualinherited

Transforms an (a list of) id(s) into an (a list of) object(s)

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 663 of file AssociationGraphImplObserver.h.

getNodeFromGraphid() [3/4]

template<class N , class E >

virtual const std::shared_ptr<N> bpp::AssociationGraphObserver< N, E >::getNodeFromGraphid ( NodeGraphid  ) const

pure virtualinherited

Transforms an (a list of) id(s) into an (a list of) object(s)

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getNodeFromGraphid() [4/4]

template<class N , class E >

virtual std::shared_ptr<N> bpp::AssociationGraphObserver< N, E >::getNodeFromGraphid ( NodeGraphid  )

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getNodeGraphid() [1/2]

NodeGraphid bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeGraphid ( const Nref  nodeObject ) const

inlinevirtualinherited

Return the associated Node ID

Parameters

nodeObject

object which to return the node ID

Returns

a node ID

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 630 of file AssociationGraphImplObserver.h.

getNodeGraphid() [2/2]

template<class N , class E >

virtual NodeGraphid bpp::AssociationGraphObserver< N, E >::getNodeGraphid ( const std::shared_ptr< N >  nodeObject ) const

pure virtualinherited

Return the associated Node ID

Parameters

nodeObject

object which to return the node ID

Returns

a node ID

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getNodeIndex() [1/2]

NodeIndex bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeIndex ( const Nref  nodeObject ) const

inlinevirtualinherited

Return the associated Node index

Parameters

nodeObject

object which to return the node index

Returns

a node index

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 764 of file AssociationGraphImplObserver.h.

getNodeIndex() [2/2]

template<class N , class E >

virtual NodeIndex bpp::AssociationGraphObserver< N, E >::getNodeIndex ( const std::shared_ptr< N >  nodeObject ) const

pure virtualinherited

Return the associated Node index

Parameters

nodeObject

object which to return the node index

Returns

a node index

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getNodeIndexes() [1/2]

std::vector<NodeIndex> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeIndexes ( std::vector< Nref >  nodes ) const

inlinevirtualinherited

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 773 of file AssociationGraphImplObserver.h.

getNodeIndexes() [2/2]

template<class N , class E >

virtual std::vector<NodeIndex> bpp::AssociationGraphObserver< N, E >::getNodeIndexes ( std::vector< std::shared_ptr< N > >  nodeObjects ) const

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getNodes()

std::pair<Nref, Nref> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodes ( Eref  edge ) const

inlineinherited

Get nodes located at the extremities of an edge

Parameters

edge

an edge

Returns

a pair of the Nodes at each extremity of the edge example : N1–E1-->N2; getNodes(E1) will return (N1,N2);

Definition at line 1473 of file AssociationGraphImplObserver.h.

getNodesFromGraphid() [1/2]

std::vector<Nref > bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodesFromGraphid ( std::vector< NodeGraphid >  nodes ) const

inlinevirtualinherited

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 670 of file AssociationGraphImplObserver.h.

getNodesFromGraphid() [2/2]

template<class N , class E >

virtual std::vector<std::shared_ptr<N> > bpp::AssociationGraphObserver< N, E >::getNodesFromGraphid ( std::vector< NodeGraphid >  ) const

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getNumberOfEdges()

size_t bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNumberOfEdges ( ) const

inlineinherited

Return the number of defined edges, ie edges that have a corresponding object in this GraphObserver

Returns

the number of edges

Definition at line 1567 of file AssociationGraphImplObserver.h.

getNumberOfFathers()

template<class N , class E , class DAGraphImpl >

size_t bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::getNumberOfFathers ( const std::shared_ptr< N >  node ) const

inlinevirtual

Return the number of fathers

Parameters

node	the concerned node

Returns

the number of fathers

Implements bpp::AssociationDAGraphObserver< N, E >.

Definition at line 239 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph(), and bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeGraphid().

getNumberOfLeaves()

size_t bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNumberOfLeaves ( ) const

inlineinherited

Return the number of defined leaves, ie leaves that have a corresponding object in this GraphObserver

Returns

the number of leaves

Definition at line 1578 of file AssociationGraphImplObserver.h.

getNumberOfNodes()

size_t bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNumberOfNodes ( ) const

inlineinherited

Return the number of defined nodes, ie nodes that have a corresponding object in this GraphObserver

Returns

the number of nodes

Definition at line 1557 of file AssociationGraphImplObserver.h.

getNumberOfSons()

template<class N , class E , class DAGraphImpl >

size_t bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::getNumberOfSons ( const std::shared_ptr< N >  node ) const

inlinevirtual

Return the number of sons

Parameters

node	the concerned node

Returns

the number of sons

Implements bpp::AssociationDAGraphObserver< N, E >.

Definition at line 249 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph(), and bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeGraphid().

getOutgoingEdges() [1/4]

std::vector<Eref > bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getOutgoingEdges ( const Nref  node ) const

inlinevirtualinherited

In an directed graph, get all the edges which are leaving a node in the graph.

Parameters

node	the node one wants to get its edges

Returns

a vector containing the outgoing edges

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1165 of file AssociationGraphImplObserver.h.

getOutgoingEdges() [2/4]

template<class N , class E >

virtual std::vector<std::shared_ptr<E> > bpp::AssociationGraphObserver< N, E >::getOutgoingEdges ( const std::shared_ptr< N >  node ) const

pure virtualinherited

In an directed graph, get all the edges which are leaving a node in the graph.

Parameters

node	the node one wants to get its edges

Returns

a vector containing the outgoing edges

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getOutgoingEdges() [3/4]

std::vector<EdgeIndex> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getOutgoingEdges ( NodeIndex  node ) const

inlinevirtualinherited

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1170 of file AssociationGraphImplObserver.h.

getOutgoingEdges() [4/4]

template<class N , class E >

virtual std::vector<EdgeIndex> bpp::AssociationGraphObserver< N, E >::getOutgoingEdges ( NodeIndex  node ) const

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getOutgoingNeighbors() [1/4]

std::vector<Nref > bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getOutgoingNeighbors ( const Nref  node ) const

inlinevirtualinherited

In an directed graph, get all the neighbors which are leaving a node in the graph.

Parameters

node	the node one wants to get its neighbors

Returns

a vector containing the outgoing neighbors

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1149 of file AssociationGraphImplObserver.h.

getOutgoingNeighbors() [2/4]

template<class N , class E >

virtual std::vector<std::shared_ptr<N> > bpp::AssociationGraphObserver< N, E >::getOutgoingNeighbors ( const std::shared_ptr< N >  node ) const

pure virtualinherited

In an directed graph, get all the neighbors which are leaving a node in the graph.

Parameters

node	the node one wants to get its neighbors

Returns

a vector containing the outgoing neighbors

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getOutgoingNeighbors() [3/4]

std::vector<NodeIndex> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getOutgoingNeighbors ( NodeIndex  node ) const

inlinevirtualinherited

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1154 of file AssociationGraphImplObserver.h.

getOutgoingNeighbors() [4/4]

template<class N , class E >

virtual std::vector<NodeIndex> bpp::AssociationGraphObserver< N, E >::getOutgoingNeighbors ( NodeIndex  node ) const

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getRoot() [1/2]

Nref bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getRoot ( ) const

inlinevirtualinherited

Returns

the root

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 728 of file AssociationGraphImplObserver.h.

getRoot() [2/2]

template<class N , class E >

virtual std::shared_ptr<N> bpp::AssociationGraphObserver< N, E >::getRoot ( ) const

pure virtualinherited

Returns

the root

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getRootIndex() [1/2]

NodeIndex bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getRootIndex ( ) const

inlinevirtualinherited

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 733 of file AssociationGraphImplObserver.h.

getRootIndex() [2/2]

template<class N , class E >

virtual NodeIndex bpp::AssociationGraphObserver< N, E >::getRootIndex ( ) const

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

getSon() [1/3]

template<class N , class E >

virtual NodeIndex bpp::AssociationDAGraphObserver< N, E >::getSon ( const EdgeIndex  edge ) const

pure virtualinherited

getSon() [2/3]

template<class N , class E , class DAGraphImpl >

NodeIndex bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::getSon ( const EdgeIndex  edgeId ) const

inline

Definition at line 213 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getEdge(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getEdgeGraphid(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeFromGraphid(), and bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeIndex().

getSon() [3/3]

template<class N , class E , class DAGraphImpl >

std::shared_ptr<N> bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::getSon ( const std::shared_ptr< E >  edge ) const

inlinevirtual

Return the son of an edge

Parameters

edge	the concerned edge

Returns

the son Node

Implements bpp::AssociationDAGraphObserver< N, E >.

Definition at line 208 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getEdgeGraphid(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph(), and bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeFromGraphid().

getSons() [1/3]

template<class N , class E , class DAGraphImpl >

std::vector<NodeIndex> bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::getSons ( const NodeIndex  node ) const

inline

Definition at line 197 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNode(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeGraphid(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeIndexes(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodesFromGraphid(), and bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::getSons().

getSons() [2/3]

template<class N , class E >

virtual std::vector<NodeIndex> bpp::AssociationDAGraphObserver< N, E >::getSons ( const NodeIndex  node ) const

pure virtualinherited

getSons() [3/3]

template<class N , class E , class DAGraphImpl >

std::vector<std::shared_ptr<N> > bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::getSons ( const std::shared_ptr< N >  node ) const

inlinevirtual

Return the sons of a node

Returns

a vector of son Nodes

Implements bpp::AssociationDAGraphObserver< N, E >.

Definition at line 192 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeGraphid(), and bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodesFromGraphid().

Referenced by bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::getSons().

hasEdge() [1/3]

bool bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::hasEdge ( EdgeIndex  edge ) const

inlinevirtualinherited

Return if has Edge matching EdgeIndex

Parameters

edge	EdgeIndex index

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 927 of file AssociationGraphImplObserver.h.

hasEdge() [2/3]

template<class N , class E >

virtual bool bpp::AssociationGraphObserver< N, E >::hasEdge ( EdgeIndex  edgeIndex ) const

pure virtualinherited

Return if the Graph has an edge matching edgeIndex

Parameters

edgeIndex

the index of the wanted edge

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

hasEdge() [3/3]

bool bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::hasEdge ( Eref  edgeObject ) const

inlineinherited

Definition at line 373 of file AssociationGraphImplObserver.h.

hasEdgeIndex() [1/2]

bool bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::hasEdgeIndex ( const Eref  edgeObject ) const

inlinevirtualinherited

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 754 of file AssociationGraphImplObserver.h.

hasEdgeIndex() [2/2]

template<class N , class E >

virtual bool bpp::AssociationGraphObserver< N, E >::hasEdgeIndex ( const std::shared_ptr< E >  edgeObject ) const

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

hasFather() [1/3]

template<class N , class E , class DAGraphImpl >

bool bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::hasFather ( const NodeIndex  node ) const

inline

Definition at line 183 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNode(), and bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeGraphid().

hasFather() [2/3]

template<class N , class E >

virtual bool bpp::AssociationDAGraphObserver< N, E >::hasFather ( const NodeIndex  node ) const

pure virtualinherited

hasFather() [3/3]

template<class N , class E , class DAGraphImpl >

bool bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::hasFather ( const std::shared_ptr< N >  nodeObject ) const

inlinevirtual

Has the node a father?

Implements bpp::AssociationDAGraphObserver< N, E >.

Definition at line 178 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph(), and bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeGraphid().

hasNode() [1/3]

bool bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::hasNode ( NodeIndex  node ) const

inlinevirtualinherited

Return if has Node matching NodeIndex

Parameters

node	NodeIndex index

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 918 of file AssociationGraphImplObserver.h.

hasNode() [2/3]

template<class N , class E >

virtual bool bpp::AssociationGraphObserver< N, E >::hasNode ( NodeIndex  nodeIndex ) const

pure virtualinherited

Return if the Graph has a node matching nodeIndex

Parameters

nodeIndex

the index of the wanted node

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

hasNode() [3/3]

bool bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::hasNode ( Nref  nodeObject ) const

inlineinherited

Definition at line 366 of file AssociationGraphImplObserver.h.

hasNodeIndex() [1/2]

bool bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::hasNodeIndex ( const Nref  nodeObject ) const

inlinevirtualinherited

return if the object has an index.

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 749 of file AssociationGraphImplObserver.h.

hasNodeIndex() [2/2]

template<class N , class E >

virtual bool bpp::AssociationGraphObserver< N, E >::hasNodeIndex ( const std::shared_ptr< N >  nodeObject ) const

pure virtualinherited

return if the object has an index.

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

incomingEdgesIterator() [1/3]

std::unique_ptr<typename AssociationGraphObserver<N, E>::EdgeIterator> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::incomingEdgesIterator ( Nref  node )

inlinevirtualinherited

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1427 of file AssociationGraphImplObserver.h.

incomingEdgesIterator() [2/3]

std::unique_ptr<typename AssociationGraphObserver<N, E>::EdgeIterator> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::incomingEdgesIterator ( Nref  node ) const

inlineinherited

Definition at line 1432 of file AssociationGraphImplObserver.h.

incomingEdgesIterator() [3/3]

template<class N , class E >

virtual std::unique_ptr<EdgeIterator> bpp::AssociationGraphObserver< N, E >::incomingEdgesIterator ( std::shared_ptr< N >  node )

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

incomingNeighborNodesIterator() [1/4]

std::unique_ptr<typename AssociationGraphObserver<N, E>::NodeIterator> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::incomingNeighborNodesIterator ( Nref  node )

inlinevirtualinherited

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1091 of file AssociationGraphImplObserver.h.

incomingNeighborNodesIterator() [2/4]

std::unique_ptr<typename AssociationGraphObserver<N, E>::NodeIterator> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::incomingNeighborNodesIterator ( Nref  node ) const

inlinevirtualinherited

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1096 of file AssociationGraphImplObserver.h.

incomingNeighborNodesIterator() [3/4]

template<class N , class E >

virtual std::unique_ptr<NodeIterator> bpp::AssociationGraphObserver< N, E >::incomingNeighborNodesIterator ( std::shared_ptr< N >  node ) const

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

incomingNeighborNodesIterator() [4/4]

template<class N , class E >

virtual std::unique_ptr<NodeIterator> bpp::AssociationGraphObserver< N, E >::incomingNeighborNodesIterator ( std::shared_ptr< N >  node )

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

isLeaf() [1/2]

bool bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::isLeaf ( const NodeIndex  nodeid ) const

inlineinherited

Definition at line 1462 of file AssociationGraphImplObserver.h.

isLeaf() [2/2]

bool bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::isLeaf ( const Nref  node ) const

inlineinherited

Is the node a leaf?

Definition at line 1457 of file AssociationGraphImplObserver.h.

isRooted()

template<class N , class E , class DAGraphImpl >

bool bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::isRooted ( ) const

inlinevirtual

Is the DAG rooted? Ie with a unique node with no father.

Returns

true if rooted

Implements bpp::AssociationDAGraphObserver< N, E >.

Definition at line 144 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph().

isValid()

template<class N , class E , class DAGraphImpl >

bool bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::isValid ( ) const

inlinevirtual

Is the graph a DAG? A DAG must be acyclic and with no isolated node.

Returns

true if valid DAG

Implements bpp::AssociationDAGraphObserver< N, E >.

Definition at line 135 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph().

link() [1/2]

void bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::link ( Nref  nodeObjectA, Nref  nodeObjectB, Eref  edgeObject = 00  )

inlinevirtualinherited

Creates a link between two existing nodes. If directed graph: nodeA -> nodeB.

Parameters

nodeObjectA	source node (or first node if undirected)
nodeObjectB	target node (or second node if undirected)
edgeObject	the optional edge between the nodes (default = 00)

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 506 of file AssociationGraphImplObserver.h.

link() [2/2]

template<class N , class E >

virtual void bpp::AssociationGraphObserver< N, E >::link ( std::shared_ptr< N >  nodeObjectA, std::shared_ptr< N >  nodeObjectB, std::shared_ptr< E >  edgeObject = 00  )

pure virtualinherited

Creates a link between two existing nodes. If directed graph: nodeA -> nodeB.

Parameters

nodeObjectA	source node (or first node if undirected)
nodeObjectB	target node (or second node if undirected)
edgeObject	the optional edge between the nodes (default = 00)

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

nodeToString()

std::string bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::nodeToString ( const Nref  nodeObject ) const

inlineinherited

Definition at line 383 of file AssociationGraphImplObserver.h.

operator=()

template<class N , class E , class DAGraphImpl >

AssociationDAGraphImplObserver<N, E, DAGraphImpl>& bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::operator= ( bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl > const &  dAGraphObserver )

inline

= Operator

Parameters

dAGraphObserver

the DAGraphObserver we want to copy the values

Definition at line 110 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, GraphImpl >::operator=().

outgoingEdgesIterator() [1/3]

std::unique_ptr<typename AssociationGraphObserver<N, E>::EdgeIterator> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::outgoingEdgesIterator ( Nref  node )

inlinevirtualinherited

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1413 of file AssociationGraphImplObserver.h.

outgoingEdgesIterator() [2/3]

std::unique_ptr<typename AssociationGraphObserver<N, E>::EdgeIterator> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::outgoingEdgesIterator ( Nref  node ) const

inlineinherited

Definition at line 1418 of file AssociationGraphImplObserver.h.

outgoingEdgesIterator() [3/3]

template<class N , class E >

virtual std::unique_ptr<EdgeIterator> bpp::AssociationGraphObserver< N, E >::outgoingEdgesIterator ( std::shared_ptr< N >  node )

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

outgoingNeighborNodesIterator() [1/4]

std::unique_ptr<typename AssociationGraphObserver<N, E>::NodeIterator> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::outgoingNeighborNodesIterator ( Nref  node )

inlinevirtualinherited

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1076 of file AssociationGraphImplObserver.h.

outgoingNeighborNodesIterator() [2/4]

std::unique_ptr<typename AssociationGraphObserver<N, E>::NodeIterator> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::outgoingNeighborNodesIterator ( Nref  node ) const

inlinevirtualinherited

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1081 of file AssociationGraphImplObserver.h.

outgoingNeighborNodesIterator() [3/4]

template<class N , class E >

virtual std::unique_ptr<NodeIterator> bpp::AssociationGraphObserver< N, E >::outgoingNeighborNodesIterator ( std::shared_ptr< N >  node ) const

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

outgoingNeighborNodesIterator() [4/4]

template<class N , class E >

virtual std::unique_ptr<NodeIterator> bpp::AssociationGraphObserver< N, E >::outgoingNeighborNodesIterator ( std::shared_ptr< N >  node )

pure virtualinherited

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

outputToDot() [1/2]

void bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::outputToDot ( const std::string &  fname, const std::string &  name  ) const

inlineinherited

Definition at line 971 of file AssociationGraphImplObserver.h.

outputToDot() [2/2]

void bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::outputToDot ( std::ostream &  out, const std::string &  name  ) const

inlineinherited

Definition at line 979 of file AssociationGraphImplObserver.h.

removeFather()

template<class N , class E , class DAGraphImpl >

void bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::removeFather ( const std::shared_ptr< N >  node, const std::shared_ptr< N >  father  )

inlinevirtual

Remove a father of a node

Returns

a vector containing the removed nodes

Implements bpp::AssociationDAGraphObserver< N, E >.

Definition at line 278 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph(), and bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeGraphid().

removeFathers()

template<class N , class E , class DAGraphImpl >

std::vector<std::shared_ptr<N> > bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::removeFathers ( const std::shared_ptr< N >  node )

inlinevirtual

Remove the fathers of a node

Returns

a vector containing the removed fathers

Implements bpp::AssociationDAGraphObserver< N, E >.

Definition at line 269 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeGraphid(), and bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodesFromGraphid().

removeSon()

template<class N , class E , class DAGraphImpl >

void bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::removeSon ( const std::shared_ptr< N >  node, const std::shared_ptr< N >  son  )

inlinevirtual

Remove a son of a node

Implements bpp::AssociationDAGraphObserver< N, E >.

Definition at line 295 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph(), and bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeGraphid().

removeSons()

template<class N , class E , class DAGraphImpl >

std::vector<std::shared_ptr<N> > bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::removeSons ( const std::shared_ptr< N >  node )

inlinevirtual

Remove the sons of a node

Returns

a vector containing the removed nodes

Implements bpp::AssociationDAGraphObserver< N, E >.

Definition at line 287 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph(), bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeGraphid(), and bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodesFromGraphid().

rootAt()

template<class N , class E , class DAGraphImpl >

void bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::rootAt ( const std::shared_ptr< N >  root )

inlinevirtual

Sets the root and make the DAG directed from root to leaves.

Implements bpp::AssociationDAGraphObserver< N, E >.

Definition at line 170 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getGraph(), and bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::getNodeGraphid().

setEdgeIndex() [1/2]

EdgeIndex bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::setEdgeIndex ( const Eref  edgeObject, EdgeIndex  index  )

inlinevirtualinherited

Set an index associated to an edge

Parameters

edgeObject	object to which one want to set the index
index	intex to be given, 0 to get the first free index

Returns

the given index

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 834 of file AssociationGraphImplObserver.h.

setEdgeIndex() [2/2]

template<class N , class E >

virtual EdgeIndex bpp::AssociationGraphObserver< N, E >::setEdgeIndex ( const std::shared_ptr< E >  edgeObject, EdgeIndex  index  )

pure virtualinherited

Set an index associated to an edge

Parameters

edgeObject	object to which one want to set the index
index	intex to be given, 0 to get the first free index

Returns

the given index

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

setEdgeLinking() [1/2]

void bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::setEdgeLinking ( Nref  nodeA, Nref  nodeB, Eref  edge  )

inlinevirtualinherited

Sets the Edge between two nodes nodeA -> nodeB

Parameters

nodeA	source node (if directed)
nodeB	destination node (if directed)
edge	the edge between these two nodes

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 1496 of file AssociationGraphImplObserver.h.

setEdgeLinking() [2/2]

template<class N , class E >

virtual void bpp::AssociationGraphObserver< N, E >::setEdgeLinking ( std::shared_ptr< N >  nodeA, std::shared_ptr< N >  nodeB, std::shared_ptr< E >  edge  )

pure virtualinherited

Sets the Edge between two nodes nodeA -> nodeB

Parameters

nodeA	source node (if directed)
nodeB	destination node (if directed)
edge	the edge between these two nodes

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

setNodeIndex() [1/2]

NodeIndex bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::setNodeIndex ( const Nref  nodeObject, NodeIndex  index  )

inlinevirtualinherited

Set an index associated to a node

Parameters

nodeObject	object to which one want to set the index
index	index to be given

Returns

the given index

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 810 of file AssociationGraphImplObserver.h.

setNodeIndex() [2/2]

template<class N , class E >

virtual NodeIndex bpp::AssociationGraphObserver< N, E >::setNodeIndex ( const std::shared_ptr< N >  nodeObject, NodeIndex  index  )

pure virtualinherited

Set an index associated to a node

Parameters

nodeObject	object to which one want to set the index
index	intex to be given, 0 to get the first free index

Returns

the given index

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

setRoot()

void bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::setRoot ( const Nref  newRoot )

inlineinherited

set the root (but no checking, to be used at first construction)

Definition at line 720 of file AssociationGraphImplObserver.h.

sonsIterator() [1/2]

template<class N , class E , class DAGraphImpl >

std::unique_ptr<typename AssociationDAGraphObserver<N, E>::NodeIterator> bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::sonsIterator ( std::shared_ptr< N >  node )

inlinevirtual

Implements bpp::AssociationDAGraphObserver< N, E >.

Definition at line 367 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::outgoingNeighborNodesIterator().

sonsIterator() [2/2]

template<class N , class E , class DAGraphImpl >

std::unique_ptr<typename AssociationDAGraphObserver<N, E>::NodeIterator> bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >::sonsIterator ( std::shared_ptr< N >  node ) const

inlinevirtual

Implements bpp::AssociationDAGraphObserver< N, E >.

Definition at line 372 of file AssociationDAGraphImplObserver.h.

References bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::outgoingNeighborNodesIterator().

unlink() [1/2]

void bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::unlink ( Nref  nodeObjectA, Nref  nodeObjectB  )

inlinevirtualinherited

Deletes the link between two existing nodes in the graph.

Implements bpp::AssociationGraphObserver< N, E >.

Definition at line 533 of file AssociationGraphImplObserver.h.

unlink() [2/2]

template<class N , class E >

virtual void bpp::AssociationGraphObserver< N, E >::unlink ( std::shared_ptr< N >  nodeObjectA, std::shared_ptr< N >  nodeObjectB  )

pure virtualinherited

Detroys a link between two existing nodes in the graph. If directed graph: nodeA -> nodeB.

Parameters

nodeObjectA	source node (or first node if undirected)
nodeObjectB	target node (or second node if undirected)

Implemented in bpp::AssociationGraphImplObserver< N, E, GraphImpl >, bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >, and bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >.

Member Data Documentation

EToGraphid_

std::map<Eref, EdgeGraphid> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::EToGraphid_

privateinherited

Can find an Edge with the corresponding object.

Definition at line 109 of file AssociationGraphImplObserver.h.

EToIndex_

std::map<Eref, EdgeIndex> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::EToIndex_

privateinherited

Can find an Edge index with the corresponding object.

Definition at line 139 of file AssociationGraphImplObserver.h.

graphidToE_

std::vector<Eref > bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::graphidToE_

privateinherited

List of edges, stored at the same ID than the corresponding edges in the observed graph.

Definition at line 99 of file AssociationGraphImplObserver.h.

graphidToN_

std::vector<Nref > bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::graphidToN_

privateinherited

Registration with Graph Ids. List of nodes, stored at the same ID than the corresponding nodes in the observed graph.

Definition at line 93 of file AssociationGraphImplObserver.h.

indexToE_

std::vector<Eref > bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::indexToE_

privateinherited

List of edges, stored at a given index.

Definition at line 129 of file AssociationGraphImplObserver.h.

indexToN_

std::vector<Nref > bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::indexToN_

privateinherited

Registration with own Ids (named as index). List of nodes, stored at a given index.

Definition at line 124 of file AssociationGraphImplObserver.h.

NToGraphid_

std::map<Nref, NodeGraphid> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::NToGraphid_

privateinherited

Can find a Node with the corresponding object.

Definition at line 104 of file AssociationGraphImplObserver.h.

NToIndex_

std::map<Nref, NodeIndex> bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::NToIndex_

privateinherited

Can find a Node index with the corresponding object.

Definition at line 134 of file AssociationGraphImplObserver.h.

subjectGraph_

std::shared_ptr<DAGraphImpl > bpp::AssociationGraphImplObserver< N, E, DAGraphImpl >::subjectGraph_

protectedinherited

The observed Graph. Anytime this graph is observed, the current object will be warned to take changes into account.

Definition at line 80 of file AssociationGraphImplObserver.h.

---

The documentation for this class was generated from the following file:

• Bpp/Graph/AssociationDAGraphImplObserver.h