#include <Bpp/App/NumCalcApplicationTools.h>

Public Member Functions
	NumCalcApplicationTools ()

virtual	~NumCalcApplicationTools ()

Static Public Member Functions
static std::vector< int >	seqFromString (const std::string &s, const std::string &delim=",", const std::string &seqdelim="-")
	Build a vector of integers as described by a string. More...

static std::vector< double >	getVector (const std::string &desc)
	Build a vector of double from a structured text description. More...

static double	getDefaultValue (const ParameterList &pl, const std::string &name, double x)
	Returns the value of the Parameter of the given name if it exists; otherwise returns the default value. More...

static ParameterGrid *	getParameterGrid (std::map< std::string, std::string > &params, const std::string &suffix="", bool suffixIsOptional=true, bool warn=true)
	Design a parameter grid from input options. More...

Detailed Description

Definition at line 52 of file NumCalcApplicationTools.h.

Constructor & Destructor Documentation

◆ NumCalcApplicationTools()

bpp::NumCalcApplicationTools::NumCalcApplicationTools ( )

◆ ~NumCalcApplicationTools()

virtual bpp::NumCalcApplicationTools::~NumCalcApplicationTools ( )

virtual

Member Function Documentation

◆ getDefaultValue()

double NumCalcApplicationTools::getDefaultValue	(	const ParameterList &	pl,
		const std::string &	name,
		double	x
	)

static

Returns the value of the Parameter of the given name if it exists; otherwise returns the default value.

Author: Laurent Gueguen

Parameters

pl	A parameter list to look in.
name	A string name
x	A double value

Definition at line 118 of file NumCalcApplicationTools.cpp.

References bpp::Parameter::getName(), bpp::Parameter::getValue(), and bpp::ParameterList::size().

◆ getParameterGrid()

ParameterGrid * NumCalcApplicationTools::getParameterGrid	(	std::map< std::string, std::string > &	params,
		const std::string &	suffix = `""`,
		bool	suffixIsOptional = `true`,
		bool	warn = `true`
	)

static

Design a parameter grid from input options.

Example:

grid.number_of_parameters=3
grid.parameter1.name=x
grid.parameter1.values=0.1,0.2,0.3,0.4,0.5
grid.parameter2.name=y
grid.parameter2.values=seq(from=0.1,to=0.5,step=0.1)
grid.parameter3.name=z
grid.parameter3.values=seq(from=0.1,to=0.5,size=5)

Parameters

params	The attribute map where options may be found.
suffix	A suffix to be applied to the parameter name.
suffixIsOptional	Tell if the suffix is absolutely required.
warn	Tell if a warning must be sent in case the parameter is not found.

Returns: a parameter grid object.

Definition at line 130 of file NumCalcApplicationTools.cpp.

References bpp::ParameterGrid::addDimension(), bpp::ApplicationTools::getStringParameter(), and bpp::TextTools::toString().

◆ getVector()

vector< double > NumCalcApplicationTools::getVector ( const std::string & desc )

static

Build a vector of double from a structured text description.

The syntax may be one of the following:

Specified values: 1.23, 2.34, 3.45, 4.56
Sequence macro: seq(from=1.23,to=2.45,step=0.1) or seq(from=1.23,to=2.45,size=5) The meaning of these to form is equivalent as the R function: The first one start from 1.23 and increment 0.1 until it reaches the 2.45 value, wheras the seocnd one will compute 3 values at equal distance from 1.23 and 2.45. the 'from' and 'to' values are included, except for the first syntax when the interval is not an exact multiple of the 'step' argument.