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3.0.0
PolymorphismMultiGContainerTools.h
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//
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// File PolymorphismMultiGContainerTools.h
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// Authors : Sylvain Gailard
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// Khalid Belkhir
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// Last modification : june 15 2006
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//
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/*
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Copyright or © or Copr. Bio++ Development Team, (November 17, 2004)
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This software is a computer program whose purpose is to provide classes
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for population genetics analysis.
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This software is governed by the CeCILL license under French law and
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abiding by the rules of distribution of free software. You can use,
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modify and/ or redistribute the software under the terms of the CeCILL
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license as circulated by CEA, CNRS and INRIA at the following URL
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"http://www.cecill.info".
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As a counterpart to the access to the source code and rights to copy,
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modify and redistribute granted by the license, users are provided only
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with a limited warranty and the software's author, the holder of the
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economic rights, and the successive licensors have only limited
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liability.
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In this respect, the user's attention is drawn to the risks associated
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with loading, using, modifying and/or developing or reproducing the
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software by the user in light of its specific status of free software,
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that may mean that it is complicated to manipulate, and that also
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therefore means that it is reserved for developers and experienced
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professionals having in-depth computer knowledge. Users are therefore
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encouraged to load and test the software's suitability as regards their
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requirements in conditions enabling the security of their systems and/or
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data to be ensured and, more generally, to use and operate it in the
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same conditions as regards security.
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The fact that you are presently reading this means that you have had
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knowledge of the CeCILL license and that you accept its terms.
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*/
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#ifndef _POLYMORPHISMMULTIGCONTAINERTOOLS_H_
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#define _POLYMORPHISMMULTIGCONTAINERTOOLS_H_
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// From the STL
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#include <set>
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// From the PolGenLib library
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#include "
PolymorphismMultiGContainer.h
"
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#include <
Bpp/Numeric/Random/RandomTools.h
>
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namespace
bpp
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{
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class
PolymorphismMultiGContainerTools
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{
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public
:
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static
PolymorphismMultiGContainer
permutMultiG
(
const
PolymorphismMultiGContainer
& pmgc);
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static
PolymorphismMultiGContainer
permutMonoG
(
const
PolymorphismMultiGContainer
& pmgc,
const
std::set<size_t>& groups);
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static
PolymorphismMultiGContainer
permutIntraGroupMonoG
(
const
PolymorphismMultiGContainer
& pmgc,
const
std::set<size_t>& groups);
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static
PolymorphismMultiGContainer
permutAlleles
(
const
PolymorphismMultiGContainer
& pmgc,
const
std::set<size_t>& groups);
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static
PolymorphismMultiGContainer
permutIntraGroupAlleles
(
const
PolymorphismMultiGContainer
& pmgc,
const
std::set<size_t>& groups);
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static
PolymorphismMultiGContainer
extractGroups
(
const
PolymorphismMultiGContainer
& pmgc,
const
std::set<size_t>& groups);
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};
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}
// end of namespace bpp;
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#endif
// _POLYMORPHISMMULTIGCONTAINERTOOLS_H_
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PolymorphismMultiGContainer.h
RandomTools.h
bpp::PolymorphismMultiGContainerTools
Tools for PolymorphismMultiGContainer.
Definition:
PolymorphismMultiGContainerTools.h:62
bpp::PolymorphismMultiGContainerTools::permutIntraGroupMonoG
static PolymorphismMultiGContainer permutIntraGroupMonoG(const PolymorphismMultiGContainer &pmgc, const std::set< size_t > &groups)
Permut the MonolocusGenotype between individuals in the same group.
Definition:
PolymorphismMultiGContainerTools.cpp:127
bpp::PolymorphismMultiGContainerTools::permutAlleles
static PolymorphismMultiGContainer permutAlleles(const PolymorphismMultiGContainer &pmgc, const std::set< size_t > &groups)
Permut the Alleles.
Definition:
PolymorphismMultiGContainerTools.cpp:197
bpp::PolymorphismMultiGContainerTools::permutMonoG
static PolymorphismMultiGContainer permutMonoG(const PolymorphismMultiGContainer &pmgc, const std::set< size_t > &groups)
Permut the MonolocusGenotype.
Definition:
PolymorphismMultiGContainerTools.cpp:69
bpp::PolymorphismMultiGContainerTools::permutMultiG
static PolymorphismMultiGContainer permutMultiG(const PolymorphismMultiGContainer &pmgc)
Permut the MultilocusGenotype in the whole PolymorphismMultiGContainer.
Definition:
PolymorphismMultiGContainerTools.cpp:49
bpp::PolymorphismMultiGContainerTools::permutIntraGroupAlleles
static PolymorphismMultiGContainer permutIntraGroupAlleles(const PolymorphismMultiGContainer &pmgc, const std::set< size_t > &groups)
Permut the Alleles between individuals in the same group.
Definition:
PolymorphismMultiGContainerTools.cpp:263
bpp::PolymorphismMultiGContainerTools::extractGroups
static PolymorphismMultiGContainer extractGroups(const PolymorphismMultiGContainer &pmgc, const std::set< size_t > &groups)
Definition:
PolymorphismMultiGContainerTools.cpp:348
bpp::PolymorphismMultiGContainer
The PolymorphismMultiGContainer class.
Definition:
PolymorphismMultiGContainer.h:68
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