bpp-popgen  3.0.0
PolymorphismMultiGContainerTools.h
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1 //
2 // File PolymorphismMultiGContainerTools.h
3 // Authors : Sylvain Gailard
4 // Khalid Belkhir
5 // Last modification : june 15 2006
6 //
7 
8 /*
9  Copyright or © or Copr. Bio++ Development Team, (November 17, 2004)
10 
11  This software is a computer program whose purpose is to provide classes
12  for population genetics analysis.
13 
14  This software is governed by the CeCILL license under French law and
15  abiding by the rules of distribution of free software. You can use,
16  modify and/ or redistribute the software under the terms of the CeCILL
17  license as circulated by CEA, CNRS and INRIA at the following URL
18  "http://www.cecill.info".
19 
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23  economic rights, and the successive licensors have only limited
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28  software by the user in light of its specific status of free software,
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39  */
40 
41 #ifndef _POLYMORPHISMMULTIGCONTAINERTOOLS_H_
42 #define _POLYMORPHISMMULTIGCONTAINERTOOLS_H_
43 
44 // From the STL
45 #include <set>
46 
47 // From the PolGenLib library
49 
51 
52 namespace bpp
53 {
62 {
63 public:
71 
82  static PolymorphismMultiGContainer permutMonoG(const PolymorphismMultiGContainer& pmgc, const std::set<size_t>& groups);
83 
94  static PolymorphismMultiGContainer permutIntraGroupMonoG(const PolymorphismMultiGContainer& pmgc, const std::set<size_t>& groups);
95 
106  static PolymorphismMultiGContainer permutAlleles(const PolymorphismMultiGContainer& pmgc, const std::set<size_t>& groups);
107 
117  static PolymorphismMultiGContainer permutIntraGroupAlleles(const PolymorphismMultiGContainer& pmgc, const std::set<size_t>& groups);
118  static PolymorphismMultiGContainer extractGroups(const PolymorphismMultiGContainer& pmgc, const std::set<size_t>& groups);
119 };
120 } // end of namespace bpp;
121 
122 #endif // _POLYMORPHISMMULTIGCONTAINERTOOLS_H_
123 
Tools for PolymorphismMultiGContainer.
static PolymorphismMultiGContainer permutIntraGroupMonoG(const PolymorphismMultiGContainer &pmgc, const std::set< size_t > &groups)
Permut the MonolocusGenotype between individuals in the same group.
static PolymorphismMultiGContainer permutAlleles(const PolymorphismMultiGContainer &pmgc, const std::set< size_t > &groups)
Permut the Alleles.
static PolymorphismMultiGContainer permutMonoG(const PolymorphismMultiGContainer &pmgc, const std::set< size_t > &groups)
Permut the MonolocusGenotype.
static PolymorphismMultiGContainer permutMultiG(const PolymorphismMultiGContainer &pmgc)
Permut the MultilocusGenotype in the whole PolymorphismMultiGContainer.
static PolymorphismMultiGContainer permutIntraGroupAlleles(const PolymorphismMultiGContainer &pmgc, const std::set< size_t > &groups)
Permut the Alleles between individuals in the same group.
static PolymorphismMultiGContainer extractGroups(const PolymorphismMultiGContainer &pmgc, const std::set< size_t > &groups)
The PolymorphismMultiGContainer class.