bpp::AbstractIDataSet Class Reference

Partial implementation of the DataSet Input interface. More...

#include <Bpp/PopGen/DataSet/Io/AbstractIDataSet.h>

Inheritance diagram for bpp::AbstractIDataSet:

Collaboration diagram for bpp::AbstractIDataSet:

Public Member Functions
virtual	~AbstractIDataSet ()
virtual const std::string	getFormatName () const=0
virtual const std::string	getFormatDescription () const=0
The IDataSet interface.
virtual void	read (std::istream &is, DataSet &data_set)=0
	Read a DataSet on istream. More...
virtual void	read (const std::string &path, DataSet &data_set)
	Read a DataSet from a text file. More...
virtual DataSet *	read (std::istream &is)
	Read istream and return a DataSet. More...
virtual DataSet *	read (const std::string &path)
	Read a text file and return a DataSet. More...

Private Member Functions
The IOFormat interface.
const std::string	getDataType () const

Detailed Description

Partial implementation of the DataSet Input interface.

Author

Sylvain Gaillard

Definition at line 55 of file AbstractIDataSet.h.

Constructor & Destructor Documentation

~AbstractIDataSet()

AbstractIDataSet::~AbstractIDataSet ( )

virtual

Definition at line 50 of file AbstractIDataSet.cpp.

Member Function Documentation

getDataType()

const std::string bpp::IODataSet::getDataType ( ) const

inlineprivatevirtualinherited

Implements bpp::IOFormat.

Definition at line 67 of file IODataSet.h.

read() [1/4]

DataSet * AbstractIDataSet::read ( const std::string &  path )

virtual

Read a text file and return a DataSet.

Implements bpp::IDataSet.

Reimplemented in bpp::PopgenlibIO, bpp::Genetix, bpp::Genepop, and bpp::GeneMapperCsvExport.

Definition at line 66 of file AbstractIDataSet.cpp.

read() [2/4]

void AbstractIDataSet::read ( const std::string &  path, DataSet &  data_set  )

virtual

Read a DataSet from a text file.

Implements bpp::IDataSet.

Reimplemented in bpp::PopgenlibIO, bpp::Genetix, bpp::Genepop, and bpp::GeneMapperCsvExport.

Definition at line 52 of file AbstractIDataSet.cpp.

read() [3/4]

DataSet * AbstractIDataSet::read ( std::istream &  is )

virtual

Read istream and return a DataSet.

Implements bpp::IDataSet.

Reimplemented in bpp::PopgenlibIO, bpp::Genetix, bpp::Genepop, and bpp::GeneMapperCsvExport.

Definition at line 59 of file AbstractIDataSet.cpp.

read() [4/4]

virtual void bpp::AbstractIDataSet::read ( std::istream &  is, DataSet &  data_set  )

pure virtual

Read a DataSet on istream.

Implements bpp::IDataSet.

Implemented in bpp::PopgenlibIO, bpp::Genetix, bpp::Genepop, and bpp::GeneMapperCsvExport.

Referenced by bpp::GeneMapperCsvExport::read(), bpp::Genepop::read(), bpp::Genetix::read(), and bpp::PopgenlibIO::read().

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The documentation for this class was generated from the following files:

• Bpp/PopGen/DataSet/Io/AbstractIDataSet.h
• Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp