bpp::DarwinDon Class Reference

The Darwin .don output format for popgenlib. More...

#include <Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h>

Inheritance diagram for bpp::DarwinDon:

Collaboration diagram for bpp::DarwinDon:

Public Member Functions
	DarwinDon ()
	~DarwinDon ()
The ODataSet interface.
void	write (std::ostream &os, const DataSet &data_set) const
	Write a DataSet on ostream. More...
void	write (const std::string &path, const DataSet &data_set, bool overwrite) const
	Write a DataSet in a text file. More...
The IOFormat interface
const std::string	getFormatName () const
const std::string	getFormatDescription () const

Private Member Functions
The IOFormat interface.
const std::string	getDataType () const

Detailed Description

The Darwin .don output format for popgenlib.

Author

Sylvain Gaillard

Definition at line 58 of file DarwinDon.h.

Constructor & Destructor Documentation

DarwinDon()

DarwinDon::DarwinDon

(

)

Definition at line 47 of file DarwinDon.cpp.

~DarwinDon()

DarwinDon::~DarwinDon

(

)

Definition at line 49 of file DarwinDon.cpp.

Member Function Documentation

getDataType()

const std::string bpp::IODataSet::getDataType ( ) const

inlineprivatevirtualinherited

Implements bpp::IOFormat.

Definition at line 67 of file IODataSet.h.

getFormatDescription()

const std::string bpp::DarwinDon::getFormatDescription ( ) const

inlinevirtual

Implements bpp::IOFormat.

Definition at line 85 of file DarwinDon.h.

getFormatName()

const std::string bpp::DarwinDon::getFormatName ( ) const

inlinevirtual

Implements bpp::IOFormat.

Definition at line 81 of file DarwinDon.h.

write() [1/2]

void DarwinDon::write ( const std::string &  path, const DataSet &  data_set, bool  overwrite  ) const

virtual

Write a DataSet in a text file.

Reimplemented from bpp::AbstractODataSet.

Definition at line 78 of file DarwinDon.cpp.

References bpp::AbstractODataSet::write().

write() [2/2]

void DarwinDon::write ( std::ostream &  os, const DataSet &  data_set  ) const

virtual

Write a DataSet on ostream.

Implements bpp::AbstractODataSet.

Definition at line 51 of file DarwinDon.cpp.

References bpp::Individual::getId(), bpp::DataSet::getIndividualAtPositionFromGroup(), bpp::DataSet::getNumberOfGroups(), bpp::DataSet::getNumberOfIndividualsInGroup(), and bpp::VectorTools::print().

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The documentation for this class was generated from the following files:

• Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h
• Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp