The MultiAlleleMonolocusGenotype class. More...

#include <Bpp/PopGen/MultiAlleleMonolocusGenotype.h>

Inheritance diagram for bpp::MultiAlleleMonolocusGenotype:

Collaboration diagram for bpp::MultiAlleleMonolocusGenotype:

Public Member Functions
	MultiAlleleMonolocusGenotype (std::vector< size_t > allele_index)
	Build a monolocus genotype containing many alleles. More...

	MultiAlleleMonolocusGenotype (const MultiAlleleMonolocusGenotype &mmg)
	Copy constructor. More...

	~MultiAlleleMonolocusGenotype ()
	Destroy the MultiAlleleMonolocusGenotype. More...

MultiAlleleMonolocusGenotype &	operator= (const MultiAlleleMonolocusGenotype &mmg)
	The affectation operator. More...

bool	operator== (const MultiAlleleMonolocusGenotype &mmg) const
	The == operator. More...

bool	isHomozygous () const
	Test the homozygozity of the locus (i.e. all allele are identical). More...

The MonolocusGenotype interface:
std::vector< size_t >	getAlleleIndex () const
	Get the alleles' index. More...

The Clonable interface:
MultiAlleleMonolocusGenotype *	clone () const

Private Attributes
std::vector< size_t >	allele_index_

Detailed Description

The MultiAlleleMonolocusGenotype class.

This class is intended to handle monolocus genotype with many alleles like polyploid loci or loci obtained by trace file without cutoff on peaks or other filter.

Author: Sylvain Gaillard

Definition at line 62 of file MultiAlleleMonolocusGenotype.h.

Constructor & Destructor Documentation

◆ MultiAlleleMonolocusGenotype() [1/2]

MultiAlleleMonolocusGenotype::MultiAlleleMonolocusGenotype ( std::vector< size_t > allele_index )

Build a monolocus genotype containing many alleles.

Definition at line 47 of file MultiAlleleMonolocusGenotype.cpp.

References allele_index_.

Referenced by clone().

◆ MultiAlleleMonolocusGenotype() [2/2]

MultiAlleleMonolocusGenotype::MultiAlleleMonolocusGenotype ( const MultiAlleleMonolocusGenotype & mmg )

Copy constructor.

Definition at line 55 of file MultiAlleleMonolocusGenotype.cpp.

References allele_index_, and getAlleleIndex().

◆ ~MultiAlleleMonolocusGenotype()

MultiAlleleMonolocusGenotype::~MultiAlleleMonolocusGenotype ( )

Destroy the MultiAlleleMonolocusGenotype.

Definition at line 65 of file MultiAlleleMonolocusGenotype.cpp.

References allele_index_.

Member Function Documentation

◆ clone()

MultiAlleleMonolocusGenotype * MultiAlleleMonolocusGenotype::clone ( ) const

virtual

Implements bpp::Clonable.

Definition at line 102 of file MultiAlleleMonolocusGenotype.cpp.

References MultiAlleleMonolocusGenotype().

◆ getAlleleIndex()

std::vector< size_t > MultiAlleleMonolocusGenotype::getAlleleIndex ( ) const

virtual

Get the alleles' index.

The alleles' index are the position of the AlleleInfo in a LocusInfo object. If no LocusInfo is used, the index are just numbers to identify the alleles.