bpp-seq-omics  2.4.1
FeatureReader.h
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1 //
2 // File: FeatureReader.h
3 // Created by: Julien Dutheil
4 // Created on: Thu Nov 22 2012
5 //
6 
7 /*
8 Copyright or © or Copr. Bio++ Development Team, (November 17, 2004)
9 
10 This software is a computer program whose purpose is to provide classes
11 for sequences analysis.
12 
13 This software is governed by the CeCILL license under French law and
14 abiding by the rules of distribution of free software. You can use,
15 modify and/ or redistribute the software under the terms of the CeCILL
16 license as circulated by CEA, CNRS and INRIA at the following URL
17 "http://www.cecill.info".
18 
19 As a counterpart to the access to the source code and rights to copy,
20 modify and redistribute granted by the license, users are provided only
21 with a limited warranty and the software's author, the holder of the
22 economic rights, and the successive licensors have only limited
23 liability.
24 
25 In this respect, the user's attention is drawn to the risks associated
26 with loading, using, modifying and/or developing or reproducing the
27 software by the user in light of its specific status of free software,
28 that may mean that it is complicated to manipulate, and that also
29 therefore means that it is reserved for developers and experienced
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34 same conditions as regards security.
35 
36 The fact that you are presently reading this means that you have had
37 knowledge of the CeCILL license and that you accept its terms.
38 */
39 
40 #ifndef _FEATUREREADER_H_
41 #define _FEATUREREADER_H_
42 
43 #include "SequenceFeature.h"
44 
45 //From bpp-core:
46 #include <Bpp/Exceptions.h>
47 
48 //From the STL:
49 #include <string>
50 #include <vector>
51 
52 namespace bpp {
53 
60 {
61  public:
63  virtual ~FeatureReader() {}
64 
65  public:
66  virtual bool hasMoreFeature() const = 0;
67  virtual const BasicSequenceFeature nextFeature() = 0;
68  virtual void getAllFeatures(SequenceFeatureSet& features) = 0;
69  virtual void getFeaturesOfType(const std::string& type, SequenceFeatureSet& features) = 0;
70  virtual void getFeaturesOfSequence(const std::string& seqId, SequenceFeatureSet& features) = 0;
71 
72 };
73 
74 } //end of namespace bpp
75 
76 #endif //_FEATUREREADER_H_
77 
A very simple implementation of the SequenceFeature class.
Interface for feature readers.
Definition: FeatureReader.h:60
virtual void getFeaturesOfSequence(const std::string &seqId, SequenceFeatureSet &features)=0
virtual void getAllFeatures(SequenceFeatureSet &features)=0
virtual const BasicSequenceFeature nextFeature()=0
virtual void getFeaturesOfType(const std::string &type, SequenceFeatureSet &features)=0
virtual bool hasMoreFeature() const =0
virtual ~FeatureReader()
Definition: FeatureReader.h:63
A simple ensemble of sequence features.