AAIndex1Entry.h

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// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
#ifndef BPP_SEQ_ALPHABETINDEX_AAINDEX1ENTRY_H
#define BPP_SEQ_ALPHABETINDEX_AAINDEX1ENTRY_H
 
 
#include "AlphabetIndex1.h"
 
namespace bpp
{
class AAIndex1Entry :
  public ProteicAlphabetIndex1
{
private:
  std::vector<double> property_;
 
public:
  AAIndex1Entry(std::istream& input);
 
  AAIndex1Entry(const AAIndex1Entry& index) :
    ProteicAlphabetIndex1(index),
    property_(index.property_)
  {}
 
  AAIndex1Entry& operator=(const AAIndex1Entry& index)
  {
    ProteicAlphabetIndex1::operator=(*this);
    property_ = index.property_;
    return *this;
  }
 
  virtual ~AAIndex1Entry() {}
 
  AAIndex1Entry* clone() const override { return new AAIndex1Entry(*this); }
 
public:
  double getIndex(int state) const override
  {
    return property_[getAlphabet()->getStateIndex(state) - 1];
  }
 
  double getIndex(const std::string& state) const override
  {
    return property_[getAlphabet()->getStateIndex(state) - 1];
  }
 
  const std::vector<double>& indexVector() const override { return property_; }
};
} // end of namespace bpp.
#endif // BPP_SEQ_ALPHABETINDEX_AAINDEX1ENTRY_H