bpp-seq3  3.0.0
BppOSequenceWriterFormat.h
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1 // SPDX-FileCopyrightText: The Bio++ Development Group
2 //
3 // SPDX-License-Identifier: CECILL-2.1
4 
5 #ifndef BPP_SEQ_IO_BPPOSEQUENCEWRITERFORMAT_H
6 #define BPP_SEQ_IO_BPPOSEQUENCEWRITERFORMAT_H
7 
8 
9 #include "IoSequenceFactory.h"
10 
11 namespace bpp
12 {
22  public virtual IOFormat
23 {
24 private:
25  std::map<std::string, std::string> unparsedArguments_;
27 
28 public:
29  BppOSequenceWriterFormat(int warningLevel) :
30  unparsedArguments_(), warningLevel_(warningLevel) {}
32 
33 public:
34  const std::string getFormatName() const { return "BppO"; }
35 
36  const std::string getFormatDescription() const { return "Bpp Options format."; }
37 
38  const std::string getDataType() const { return "Sequence reader"; }
39 
47  std::unique_ptr<OSequence> read(const std::string& description);
48 
52  virtual const std::map<std::string, std::string>& getUnparsedArguments() const { return unparsedArguments_; }
53 };
54 } // end of namespace bpp.
55 #endif // BPP_SEQ_IO_BPPOSEQUENCEWRITERFORMAT_H
Sequence I/O in BppO format.
const std::string getDataType() const
std::unique_ptr< OSequence > read(const std::string &description)
Read a OSequence object from a string.
const std::string getFormatDescription() const
virtual const std::map< std::string, std::string > & getUnparsedArguments() const
std::map< std::string, std::string > unparsedArguments_
const std::string getFormatName() const
This alphabet is used to deal NumericAlphabet.